pypi: blast | Projects | Ecosyste.ms: Papers

10.1186/s12870-015-0497-2

No evidence for Fabaceae Gametophytic self-incompatibility being determined by Rosaceae, Solanaceae, and Plantaginaceae S-RNase lineage genes
Cited by: 14
Author(s): Bruno Aguiar, Jorge Vieira, Ana Cunha, Cristina Vieira
Software Mentions: 1
Published: over 9 years ago

10.1186/s12870-020-02623-w

Overexpression of MaTPD1A impairs fruit and pollen development by modulating some regulators in Musa itinerans
Cited by: 4
Author(s): Chunhua Hu, Ou Sheng, Tingting Dong, Qiaosong Yang, Tongxin Dou, Chunyu Li, Wei He, Hongyuan Gao, Ganjun Yi, Guiming Deng, Fangcheng Bi
Software Mentions: 1
Published: about 4 years ago

10.1186/s12870-018-1545-5

Genome-wide analysis of cotton GH3 subfamily II reveals functional divergence in fiber development, hormone response and plant architecture
Cited by: 33
Author(s): Daoqian Yu, Ghulam Qanmber, Lili Lu, Lingling Wang, Jie Li, Zhaoen Yang, Zhao Liu, Yi Li, Quanjia Chen, Venugopal Mendu, Fuguang Li, Zuoren Yang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12870-018-1598-5

Enhanced Nicotiana benthamiana immune responses caused by heterologous plant genes from Pinellia ternata
Cited by: 6
Author(s): Hafiz Muhammad Khalid Abbas, Jingshu Xiang, Zahoor Ahmad, Lilin Wang, Wubei Dong
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12870-018-1369-3

MITE insertion-dependent expression of CitRKD1 with a RWP-RK domain regulates somatic embryogenesis in citrus nucellar tissues
Cited by: 33
Author(s): Takehiko Shimada, Tetsuro Endo, Hiroshi Fujii, Michiharu Nakano, Aiko Sugiyama, Genya Daido, Satoshi Ohta, Terutaka Yoshioka, Mitsuo Omura
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2229-7-66

Sequencing analysis of 20,000 full-length cDNA clones from cassava reveals lineage specific expansions in gene families related to stress response
Cited by: 94
Author(s): Tetsuya Sakurai, Germán Plata, Fausto Rodríguez-Zapata, Motoaki Seki, Andrés Salcedo, Atsushi Toyoda, Atsushi Ishiwata, Joe Tohmé, Yoshiyuki Sakaki, Kazuo Shinozaki, Manabu Ishitani
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12870-017-1060-0

Differential proteomic analysis of replanted Rehmannia glutinosa roots by iTRAQ reveals molecular mechanisms for formation of replant disease
Cited by: 28
Author(s): Mingjie Li, Yanhui Yang, Fan Feng, Zhenan Bao, Shuqiang Chen, Chuyun Yang, Li Gu, Fengqing Wang, Jun‐Yi Zhang, Aiguo Chen, Wenxiong Lin, Xinjian Chen, Zhongyi Zhang
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2229-10-249

An in silico analysis of the mitochondrial protein import apparatus of plants
Cited by: 57
Author(s): Chris Carrie, Monika W. Murcha, James Whelan
Software Mentions: 1
Published: about 14 years ago

10.1186/1471-2229-10-55

A full-length enriched cDNA library and expressed sequence tag analysis of the parasitic weed, Striga hermonthica
Cited by: 37
Author(s): Satoko Yoshida, Juliane Karine Ishida, Nasrein Mohamed Kamal, Asif Ali, Susumu Namba, Ken Shirasu
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-8-114

Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines
Cited by: 42
Author(s): Xiaomeng Ge, Wei‐Hua Chen, Shuhui Song, Weiwei Wang, Songnian Hu, Jun Yu
Software Mentions: 1
Published: about 16 years ago

10.1186/1756-0500-5-306

URPD: a specific product primer design tool
Cited by: 16
Author(s): Li‐Yeh Chuang, Yu-Huei Cheng, Cheng‐Hong Yang
Software Mentions: 1
Published: over 12 years ago

10.1186/1756-0500-5-144

ZmbZIP60 mRNA is spliced in maize in response to ER stress
Cited by: 56
Author(s): Yanjie Li, Sabrina Humbert, Stephen H. Howell
Software Mentions: 1
Published: over 12 years ago

10.1186/1756-0500-7-863

Genetic characterisation of influenza B viruses detected in Singapore, 2004 to 2009
Cited by: 5
Author(s): Muhammad Raihan Jumat, Richard J. Sugrue, Boon Huan Tan
Software Mentions: 1
Published: almost 10 years ago

10.1186/1472-6807-8-14

"Hot cores" in proteins: Comparative analysis of the apolar contact area in structures from hyper/thermophilic and mesophilic organisms
Cited by: 16
Author(s): Alessandro Paiardini, Riccardo Sali, Francesco Bossa, Stefano Pascarella
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12917-021-02902-0

Molecular detection of Theileria species, Anaplasma species, Candidatus Mycoplasma haemobos, Trypanosoma evansi and first evidence of Theileria sinensis-associated bovine anaemia in crossbred Kedah-Kelantan x Brahman cattle
Cited by: 2
Author(s): Onyinyechukwu Ada Agina, Mohd Rosly Shaari, Nur Mahiza Md Isa, Mokrish Ajat, Mohd Zamri‐Saad, Mazlina Mazlan, Azim Salahuddin Muhamad, Afrah Alhana Kassim, Lee Chai Ha, Fairuz Hazwani Rusli, Darulmuqaamah Masaud, Hazilawati Hamzah
Software Mentions: 1
Published: over 3 years ago

10.21769/BioProtoc.3566

High-resolution and Deep Phylogenetic Reconstruction of Ancestral States from Large Transcriptomic Data Sets
Cited by: 3
Author(s): Sumanth K. Mutte, Dolf Weijers
Software Mentions: 1
Published: almost 5 years ago

10.6026/97320630012416

Structural modelling and phylogenetic analyses of PgeIF4A2 (Eukaryotic translation initiation factor) from Pennisetum glaucum reveal signature motifs with a role in stress tolerance and development
Cited by: 2
Author(s): Aakrati Agarwal, Yashwanti Mudgil, Saurabh Pandey, Dhirendra Fartyal, Malireddy K. Reddy
Software Mentions: 1
Published: almost 8 years ago

10.6026/97320630016245

Mining of miRNAs from EST data in Dendrobium nobile
Cited by: 3
Author(s): Debasish B. Krishnatreya, Pooja Moni Baruah, Bhaskar Dowarah, Kuntala Sarma Bordoloi, Heena Agarwal, Niraj Agarwala
Software Mentions: 1
Published: over 4 years ago

10.1186/s13062-016-0157-y

Evolution of the Tim17 protein family
Cited by: 53
Author(s): Vojtěch Žárský, Pavel Doležal
Software Mentions: 1
Published: about 8 years ago

10.1186/1745-6150-6-28

Interplay of recombination and selection in the genomes of Chlamydia trachomatis
Cited by: 73
Author(s): Sandeep J. Joseph, Xavier Didelot, Khanjan Gandhi, Deborah Dean, Timothy D. Read
Software Mentions: 1
Published: over 13 years ago

10.1186/s13062-016-0149-y

Essential functions linked with structural disorder in organisms of minimal genome
Cited by: 4
Author(s): Rita Pancsa, Péter Tompa
Software Mentions: 1
Published: about 8 years ago

10.1186/1745-6150-7-10

Archaeal origin of tubulin
Cited by: 90
Author(s): Natalya Yutin, Eugene V. Koonin
Software Mentions: 1
Published: almost 13 years ago

10.1186/s13062-016-0136-3

Alpha proteobacterial ancestry of the [Fe-Fe]-hydrogenases in anaerobic eukaryotes
Cited by: 23
Author(s): Mauro Degli Esposti, Diego Cortez, Luis Lozano, Simon Rasmussen, Henrik Bjørn Nielsen, Esperanza Martı́nez-Romero
Software Mentions: 1
Published: over 8 years ago

10.1242/bio.026336

Architectural delineation and molecular identification of extracellular matrix in ascidian embryos and larvae
Cited by: 11
Author(s): Jiankai Wei, Guilin Wang, Xiang Li, Ping Ren, Haiyan Yu, Bo Dong
Software Mentions: 1
Published: about 7 years ago

10.3390/biology10090848

Targeted RNA-Seq Reveals the M. tuberculosis Transcriptome from an In Vivo Infection Model
Cited by: 9
Author(s): Fernanda Cornejo‐Granados, Gamaliel López-Leal, Dulce Mata-Espinosa, Jorge Barrios-Payán, Brenda Marquina‐Castillo, Edgar Equihua-Medina, Zyanya Lucía Zatarain-Barrón, Camilo Molina-Romero, Rogelio Hernández-Pando, Adrián Ochoa-Leyva
Software Mentions: 1
Published: about 3 years ago

10.1155/2013/169794

Management of Cosmetic Embarrassment Caused byMalasseziaspp. with Fruticose LichenCladiaUsing Phylogenetic Approach
Cited by: 8
Author(s): Anand Pandey, Rohit Kumar Mishra, Amit Kumar Tiwari, Awadhesh Kumar, Anubha Bajaj, Anupam Dikshit
Software Mentions: 1
Published: almost 12 years ago

10.1155/2016/5683026

Full-Length cDNA, Prokaryotic Expression, and Antimicrobial Activity of UuHb-F-I fromUrechis unicinctus
Cited by: 5
Author(s): Niu Rongli, Xiang Chen
Software Mentions: 1
Published: almost 9 years ago

10.1155/2020/4374801

Complete Chloroplast Genome Sequencing and Phylogenetic Analysis of Two Dracocephalum Plants
Cited by: 12
Author(s): Junjun Yao, Fangyu Zhao, Yan Xu, Kaihui Zhao, Quan Hong, Yanjie Su, Peiyu Hao, Jiang Liu, Benxia Yu, Min Yao, Xiaojing Ma, Zhihua Liao, Xiaozhong Lan
Software Mentions: 1
Published: almost 4 years ago

10.1155/2015/527015

MALDI-TOF MS and CD Spectral Analysis for Identification and Structure Prediction of a Purified, Novel, Organic Solvent Stable, Fibrinolytic Metalloprotease fromBacillus cereusB80
Cited by: 13
Author(s): Rajshree Saxena, Rajni Singh
Software Mentions: 1
Published: almost 10 years ago

10.1155/2015/580240

Identification and Characterization of a Serious Multidrug ResistantStenotrophomonas maltophiliaStrain in China
Cited by: 8
Author(s): Yan Zhao, Wenkai Niu, Yong Sun, Huaijie Hao, Dong Yu, Guangyang Xu, Xueyi Shang, Xueping Tang, LU Si-jing, Junjie Yue, Yan Li
Software Mentions: 1
Published: almost 10 years ago

10.1155/2013/675145

Isolation and Identification of Free-Living Amoebae from Tap Water in Sivas, Turkey
Cited by: 44
Author(s): Kübra Açıkalın Coşkun, Semra Özçelık, Lütfi Tutar, Nazif Elaldı, Yusuf Tutar
Software Mentions: 1
Published: almost 12 years ago

10.1155/2014/246871

Cloning, Expression, Purification, and Characterization of Glutaredoxin from Antarctic Sea-Ice BacteriumPseudoalteromonassp. AN178
Cited by: 7
Author(s): Quanfu Wang, Yanhua Hou, Yonglei Shi, Xiao Han, Qian Chen, HU Zhi-guo, Yuanping Liu, YuJin Li
Software Mentions: 1
Published: almost 11 years ago

10.1155/2015/570568

How to Isolate a Plant’s Hypomethylome in One Shot
Cited by: 4
Author(s): Elisabeth Wischnitzki, Eva Maria Sehr, Karin Hansel-Hohl, Mária Berényi, K. Burg, Silvia Fluch
Software Mentions: 1
Published: almost 10 years ago

10.1155/2016/4575024

Production and Partial Characterization of an Alkaline Xylanase from a Novel FungusCladosporium oxysporum
Cited by: 24
Author(s): Guoqiang Guan, Pengxiang Zhao, Jin Fang Zhao, Meijuan Wang, Shuhao Huo, Fengjie Cui, Jianxin Jiang
Software Mentions: 1
Published: almost 9 years ago

10.1155/2015/817914

Effects of Nogo-A Silencing on TNF-αand IL-6 Secretion and TH Downregulation in Lipopolysaccharide-Stimulated PC12 Cells
Cited by: 11
Author(s): Jianbin Zhong, Shengnuo Fan, Zhenwen Yan, Shifu Xiao, Limei Wan, Chibang Chen, Simin Zhong, Lu Liu, Jun Liu
Software Mentions: 1
Published: almost 10 years ago

10.1155/2013/298920

Transcriptome Profile Analysis of Sugarcane Responses toSporisorium scitamineaInfection Using Solexa Sequencing Technology
Cited by: 38
Author(s): Qibin Wu, Liping Xu, Jinlong Guo, Yachun Su, Youxiong Que
Software Mentions: 1
Published: almost 12 years ago

10.3390/biom11060772

Pepscan Approach for the Identification of Protein–Protein Interfaces: Lessons from Experiment
Cited by: 2
Author(s): Angelita Rebollo, Eric Savier, Pierre Tufféry
Software Mentions: 1
Published: over 3 years ago

10.1186/s13068-018-1148-2

Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating β-proteobacterium Pandoraea sp. ISTKB
Cited by: 78
Author(s): Madan Kumar, Sandhya Verma, Rajesh Kumar Gazara, Manish Kumar, Ashok Pandey, Praveen Kumar Verma, Indu Shekhar Thakur
Software Mentions: 1
Published: over 6 years ago

10.1186/s13068-019-1606-5

Genomic analysis of Burkholderia sp. ISTR5 for biofunneling of lignin-derived compounds
Cited by: 40
Author(s): Raj Morya, Madan Kumar, Sanjai Singh, Indu Shekhar Thakur
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13068-019-1355-5

Comparative transcriptome analysis of a long-time span two-step culture process reveals a potential mechanism for astaxanthin and biomass hyper-accumulation in Haematococcus pluvialis JNU35
Cited by: 33
Author(s): Luodong Huang, Baoyan Gao, Minmin Wu, Feifei Wang, Chengwu Zhang
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13068-018-1308-4

Draft genome sequence and detailed characterization of biofuel production by oleaginous microalga Scenedesmus quadricauda LWG002611
Cited by: 15
Author(s): Chitralekha Nag Dasgupta, Sanjeeva Nayaka, Kiran Toppo, Atul Kumar Singh, Uday Deshpande, Amitabikram Mohapatra
Software Mentions: 1
Published: about 6 years ago

10.1080/13102818.2014.906826

NewPaenibacillus larvaebacterial isolates from honey bee colonies infected with American foulbrood disease in Egypt
Cited by: 11
Author(s): Saad Masry, Sanaa S. A. Kabeil, Elsayed E. Hafez
Software Mentions: 1
Published: over 10 years ago

10.1016/j.btre.2020.e00551

Purification and characterization of a noble thermostable algal starch liquefying alpha-amylase from Aeribacillus pallidus BTPS-2 isolated from geothermal spring of Nepal
Cited by: 6
Author(s): Parash Mani Timilsina, Gyanu Raj Pandey, Asmita Shrestha, Manish Ojha, Tika Bahadur Karki
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41413-020-0098-z

A variant in IL6ST with a selective IL-11 signaling defect in human and mouse
Cited by: 16
Author(s): Tobias Schwerd, Freia Krause, Twigg Srf., Dominik Aschenbrenner, Y-H. Chen, Uwe Borgmeyer, Miryam Müller, Santiago Manrique, Neele Schumacher, Steven A. Wall, Jonathan Jung, Timo Damm, Glüer C-C., Jürgen Scheller, Stefan Rose‐John, Elizabeth Jones, Arian Laurence, Wilkie Aom., Dirk Schmidt-Arras, Holm H. Uhlig
Software Mentions: 1
Published: over 4 years ago

10.1186/1999-3110-54-58

De novo transcriptome assembly and novel microsatellite marker information in Capsicum annuum varieties Saengryeg 211 and Saengryeg 213
Cited by: 9
Author(s): Yul-Kyun Ahn, Swati Tripathi, Young-Il Cho, Jeong-Ho Kim, Hye-Eun Lee, Do-Sun Kim, Jong-Gyu Woo, Myeong-Cheoul Cho
Software Mentions: 1
Published: about 11 years ago

10.1002/cam4.1565

A distinctively expressed long noncoding <scp>RNA</scp> , <scp>RP</scp> 11‐466I1.1, may serve as a prognostic biomarker in hepatocellular carcinoma
Cited by: 9
Author(s): Junyong Zhang, Di Zhang, Qi Zhao, Jianni Qi, Li Xiao, Chengyong Qin
Software Mentions: 1
Published: over 6 years ago

10.3390/life5010905

The Expansion of Animal MicroRNA Families Revisited
Cited by: 40
Author(s): Jana Hertel, Peter F. Stadler
Software Mentions: 1
Published: over 9 years ago

10.1186/s12936-017-1976-8

A new method for sequencing the hypervariable Plasmodium falciparum gene var2csa from clinical samples
Cited by: 13
Author(s): Antoine Dara, Mark A. Travassos, Matthew Adams, Sarah Schaffer DeRoo, Elliott F. Drábek, Sonia Agrawal, Miriam K. Laufer, Christopher V. Plowe, Joana C. Silva
Software Mentions: 1
Published: over 7 years ago

10.1186/s12936-018-2188-6

Drug resistance genes: pvcrt-o and pvmdr-1 polymorphism in patients from malaria endemic South Western Coastal Region of India
Cited by: 17
Author(s): Shiny Joy, Benudhar Mukhi, Susanta Kumar Ghosh, Rajeshwara N. Achur, D. Channe Gowda, Namita Surolia
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12936-018-2316-3

Presence of novel triple mutations in the pvdhfr from Plasmodium vivax in Mangaluru city area in the southwestern coastal region of India
Cited by: 9
Author(s): Shiny Joy, Susanta Kumar Ghosh, Rajeshwara N. Achur, D. Channe Gowda, Namita Surolia
Software Mentions: 1
Published: over 6 years ago

10.1186/1475-2875-8-69

A systematic classification of Plasmodium falciparum P-loop NTPases: structural and functional correlation
Cited by: 12
Author(s): Deepti Gangwar, Mridul Kalita, Dinesh Gupta, Virander S. Chauhan, Asif Mohmmed
Software Mentions: 1
Published: over 15 years ago

10.1007/s10126-021-10042-7

Development and Interrogation of a Transcriptomic Resource for the Giant Triton Snail (Charonia tritonis)
Cited by: 6
Author(s): Anne Klein, Cherie A. Motti, Adam K. Hillberg, Tomer Ventura, Peter Thomas‐Hall, Thomas R. Armstrong, Thomas H. Barker, Paul Whatmore, Scott F. Cummins
Software Mentions: 1
Published: over 3 years ago

10.3390/md17050275

Widespread Existence of Quorum Sensing Inhibitors in Marine Bacteria: Potential Drugs to Combat Pathogens with Novel Strategies
Cited by: 27
Author(s): Jingjing Zhao, Xinyun Li, Xiyan Hou, Chunshan Quan, Ming Chen
Software Mentions: 1
Published: over 5 years ago

10.3390/md18020102

A Truncated Galectin-3 Isolated from Skin Mucus of Atlantic Salmon Salmo salar Binds to and Modulates the Proteome of the Gram-Negative Bacteria Moritella viscosa
Cited by: 9
Author(s): Deepti Manjari Patel, Yoichiro Kitani, Kjetil Korsnes, Martin Haugmo Iversen, Monica F. Brinchmann
Software Mentions: 1
Published: almost 5 years ago

10.3390/md18090460

Marine Fungus Aspergillus chevalieri TM2-S6 Extract Protects Skin Fibroblasts from Oxidative Stress
Cited by: 14
Author(s): Sophia Letsiou, Artemis Bakea, Géraldine Le Goff, Philippe Lopes, Κonstantinos Gardikis, Michal Weis, Yehuda Benayahu, Jamal Ouazzani
Software Mentions: 1
Published: about 4 years ago

10.3390/md16010030

Characterization of a Novel Alginate Lyase from Marine Bacterium Vibrio furnissii H1
Cited by: 28
Author(s): Xiaoyan Zhu, Xiangqian Li, Hao Shi, Jia Zhou, Zhiyong Tan, Mengdi Yuan, Ping Yao, Xiaoyan Liu
Software Mentions: 1
Published: almost 7 years ago

10.3390/md13020879

New Insights on the Terpenome of the Red Seaweed Laurencia dendroidea (Florideophyceae, Rhodophyta)
Cited by: 31
Author(s): Louisi Souza de Oliveira, Diogo A. Tschoeke, Aline Lourenço de Oliveira, Lilian Jorge Hill, Wladimir Costa Paradas, Leonardo T. Salgado, Cristiane C. Thompson, Renato Crespo Pereira, Fabiano L. Thompson
Software Mentions: 1
Published: almost 10 years ago

10.3390/md10102280

Assessment of the Bacteriocinogenic Potential of Marine Bacteria Reveals Lichenicidin Production by Seaweed-Derived Bacillus spp.
Cited by: 38
Author(s): Maria Luz Prieto, L. O’Sullivan, Shiau Pin Tan, Peter McLoughlin, Helen Hughes, Paula M. O’Connor, Paul D. Cotter, Peadar G. Lawlor, Gillian E. Gardiner
Software Mentions: 1
Published: about 12 years ago

10.3390/ma14061372

Impact of the Diet on the Formation of Oxidative Stress and Inflammation Induced by Bacterial Biofilm in the Oral Cavity
Cited by: 7
Author(s): Ilona Rowińska, Adrianna Szyperska-Ślaska, Piotr Zariczny, Robert Pasławski, Karol Kramkowski, Paweł Kowalczyk
Software Mentions: 1
Published: over 3 years ago

10.3390/medicina55050178

Peptide Mapping, In Silico and In Vivo Analysis of Allergenic Sorghum Profilin Peptides
Cited by: 2
Author(s): Chandra Sekhar Bokka, Ganesh Kumar Veeramachaneni, V B S C Thunuguntla, Janakiram Bobbillapati, Jayakumar Singh Bondili
Software Mentions: 1
Published: over 5 years ago

10.1590/0074-02760170182

Dengue serotype-specific immune response in Aedes aegypti and Aedes albopictus
Cited by: 24
Author(s): Chelsea T. Smartt, Dong Ho Shin, Barry W. Alto
Software Mentions: 1
Published: almost 7 years ago

10.1111/j.1751-7915.2012.00357.x

Arbuscular mycorrhizal fungi in a wetland constructed for benzene-, methyltert-butyl ether- and ammonia-contaminated groundwater bioremediation
Cited by: 53
Author(s): Thomas Fester
Software Mentions: 1
Published: over 12 years ago

10.1111/1751-7915.12315

Experimental validation of in silico model‐predicted isocitrate dehydrogenase and phosphomannose isomerase from D ehalococcoides mccartyi
Cited by: 1
Author(s): Mahmudul Islam, Anatoli Tchigvintsev, V. Yim, Alexei Savchenko, Alexander F. Yakunin, Radhakrishnan Mahadevan, Elizabeth A. Edwards
Software Mentions: 1
Published: about 9 years ago

10.1111/1751-7915.13308

Endophytic fungal community of Dysphania ambrosioides from two heavy metal-contaminated sites: evaluated by culture-dependent and culture-independent approaches
Cited by: 18
Author(s): Shobhika Parmar, Qiaohong Li, Ying Wu, Xinya Li, Jinping Yan, Vijay Kumar Sharma, Yunlin Wei, Haiyan Li
Software Mentions: 1
Published: about 6 years ago

10.1111/1751-7915.12285

Recombinant pediocin in <scp>L</scp>actococcus lactis: increased production by propeptide fusion and improved potency by co‐production with <scp>PedC</scp>
Cited by: 10
Author(s): Alexandre Back, Frédéric Borges, Cécile Mangavel, Cédric Paris, Emmanuel Rondags, Romain Kapel, Arnaud Aymes, Hélène Rogniaux, Marija Pavlović, Auke J. van Heel, Oscar P. Kuipers, Anne-Marie Revol-Junelles, Catherine Cailliez‐Grimal
Software Mentions: 1
Published: over 9 years ago

10.1111/1751-7915.12139

<scp> vanI </scp> : a novel <scp>d</scp> ‐ <scp>A</scp> la‐ <scp>d</scp> ‐ <scp>L</scp> ac vancomycin resistance gene cluster found in <scp>D</scp> esulfitobacterium hafniense 
Cited by: 16
Author(s): Thomas Kruse, Mark Levisson, Willem M. de Vos, Hauke Smidt
Software Mentions: 1
Published: over 10 years ago

10.1111/1751-7915.12179

Biogas production using anaerobic groundwater containing a subterranean microbial community associated with the accretionary prism
Cited by: 8
Author(s): Kyohei Baito, Satomi Imai, Masayuki Matsushita, Miku Otani, Yu Sato, Hiroyuki Kimura
Software Mentions: 1
Published: about 10 years ago

10.1111/1751-7915.12295

Efflux pump‐deficient mutants as a platform to search for microbes that produce antibiotics
Cited by: 9
Author(s): Carlos Molina-Santiago, Zulema Udaondo, Abdelali Daddaoua, Amalia Roca, Jesús Martín, Ignacio Pérez‐Victoria, Fernando Reyes, Juan L. Ramos
Software Mentions: 1
Published: over 9 years ago

10.1186/1475-2859-11-134

Re-annotation of the CAZy genes of Trichoderma reesei and transcription in the presence of lignocellulosic substrates
Cited by: 140
Author(s): Mari Häkkinen, Mikko Arvas, Merja Oja, Nina Aro, Merja Penttilä, Markku Saloheimo, Tiina Pakula
Software Mentions: 1
Published: almost 13 years ago

10.1264/jsme2.ME16179

Predominant but Previously-overlooked Prokaryotic Drivers of Reductive Nitrogen Transformation in Paddy Soils, Revealed by Metatranscriptomics
Cited by: 59
Author(s): Yoko Masuda, Hideomi Itoh, Yutaka Shiratori, Kazuo Isobe, Shigeto Otsuka, Keishi Senoo
Software Mentions: 1
Published: almost 8 years ago

10.1264/jsme2.ME14156

Phylogenetic Diversity of Peltigera Cyanolichens and Their Photobionts in Southern Chile and Antarctica
Cited by: 23
Author(s): Catalina Zúñiga, Diego Leiva, Lía Ramírez-Fernández, Margarita Carú, Rebecca Yahr, Julieta Orlando
Software Mentions: 1
Published: almost 10 years ago

10.1099/mgen.0.000065

Transcriptomic analysis of staphylococcal sRNAs: insights into species-specific adaption and the evolution of pathogenesis
Cited by: 8
Author(s): William H. Broach, Amy L. Weiss, Lindsey N. Shaw
Software Mentions: 1
Published: over 8 years ago

10.1099/mgen.0.000476

Comprehensive genome analyses of Sellimonas intestinalis, a potential biomarker of homeostasis gut recovery
Cited by: 23
Author(s): Marina Muñoz, Enzo Guerrero-Araya, Catalina Cortés-Tapia, Ángela Plaza-Garrido, Trevor D. Lawley, Daniel Paredes-Sabja
Software Mentions: 1
Published: almost 4 years ago

10.1099/mgen.0.000213

MinION nanopore sequencing identifies the position and structure of bacterial antibiotic resistance determinants in a multidrug-resistant strain of enteroaggregative Escherichia coli
Cited by: 32
Author(s): David R. Greig, Timothy J. Dallman, Katie L. Hopkins, Claire Jenkins
Software Mentions: 1
Published: about 6 years ago

10.1099/mgen.0.000353

Origin, maintenance and spread of antibiotic resistance genes within plasmids and chromosomes of bloodstream isolates of Escherichia coli
Cited by: 18
Author(s): Cosmika Goswami, Stephen Fox, Matthew T. G. Holden, Martin Connor, Alistair Leanord, Thomas J. Evans
Software Mentions: 1
Published: over 4 years ago

10.1099/mgen.0.000191

Genome analysis of methicillin resistance in Macrococcus caseolyticus from dairy cattle in England and Wales
Cited by: 14
Author(s): Alison Macfadyen, Elizabeth Fisher, Ben Costa, C. Fiona Cullen, Gavin K. Paterson
Software Mentions: 1
Published: over 6 years ago

10.1099/mgen.0.000090

Putatively novel serotypes and the potential for reduced vaccine effectiveness: capsular locus diversity revealed among 5405 pneumococcal genomes
Cited by: 29
Author(s): Andries J. van Tonder, James E. Bray, Sigríður Júlía Quirk, Gunnsteinn Haraldsson, Keith A. Jolley, Martin C. J. Maiden, Steen Hoffmann, Stephen D. Bentley, Ásgeir Haraldsson, Helga Erlendsdóttir, Karl G. Kristinsson, Angela B. Brueggemann
Software Mentions: 1
Published: about 8 years ago

10.1099/mgen.0.000567

Harmonization of whole-genome sequencing for outbreak surveillance of Enterobacteriaceae and Enterococci
Cited by: 7
Author(s): Casper Jamin, Sien De Koster, Stefanie van Kleef-van Koeveringe, Dieter De Coninck, Klaas Mensaert, Katrien De Bruyne, Natascha Perales Selva, Christine Lammens, Herman Goossens, Christian J. P. A. Hoebe, Paul H. M. Savelkoul, Lieke B. van Alphen
Software Mentions: 1
Published: over 3 years ago

10.1099/mgen.0.000296

An in silico survey of Clostridioides difficile extrachromosomal elements
Cited by: 4
Author(s): Bastian Hornung, Ed J. Kuijper, Wiep Klaas Smits
Software Mentions: 1
Published: about 5 years ago

10.1099/mgen.0.000228

PhasomeIt: an ‘omics’ approach to cataloguing the potential breadth of phase variation in the genus Campylobacter
Cited by: 16
Author(s): Jack Aidley, Joseph J. Wanford, Luke R. Green, Samuel K. Sheppard, Christopher D. Bayliss
Software Mentions: 1
Published: about 6 years ago

10.1099/mgen.0.000129

Genomic characterization of a local epidemic Pseudomonas aeruginosa reveals specific features of the widespread clone ST395
Cited by: 17
Author(s): Marie Petitjean, Daniel Martak, Alicia Silvant, Xavier Bertrand, Benoı̂t Valot, Didier Hocquet
Software Mentions: 1
Published: about 7 years ago

10.1099/mgen.0.000395

Epidemiological and molecular characterization of a novel adenovirus of squirrel monkeys after fatal infection during immunosuppression
Cited by: 1
Author(s): Donna Rogers, Julio C. Ruiz, Wallace B. Baze, Gloria B. McClure, Carolyn L. Smith, Ricky Urbanowski, T. Boston, Joe H. Simmons, Larry E. Williams, Christian R. Abee, John A. Vanchiere
Software Mentions: 1
Published: about 4 years ago

10.1099/mgen.0.000482

Cryptic prophages within a Streptococcus pyogenes genotype emm4 lineage
Cited by: 7
Author(s): Alex Remmington, Samuel Haywood, Julia Edgar, Luke R. Green, Thushan I. de Silva, Claire E. Turner
Software Mentions: 1
Published: almost 4 years ago

10.1099/mgen.0.000202

Comparative genomics of Salmonella enterica serovar Montevideo reveals lineage-specific gene differences that may influence ecological niche association
Cited by: 17
Author(s): Scott V. Nguyen, Dayna M. Harhay, James L. Bono, Timothy P. L. Smith, Patricia I. Fields, Blake A. Dinsmore, Monica Santovenia, Rong Wang, Joseph M. Bosilevac, Gregory P. Harhay
Software Mentions: 1
Published: over 6 years ago

10.1099/mgen.0.000053

PhagePhisher: a pipeline for the discovery of covert viral sequences in complex genomic datasets
Cited by: 7
Author(s): Thomas Hatzopoulos, Siobhan C. Watkins, Catherine Putonti
Software Mentions: 1
Published: over 8 years ago

10.1099/mgen.0.000233

The resistomes of six carbapenem-resistant pathogens – a critical genotype–phenotype analysis
Cited by: 16
Author(s): Anna Johnning, Nahid Karami, Erika Tång Hallbäck, Vilhelm Müller, Lena Nyberg, Mariana Buongermino Pereira, Callum Stewart, Tobias Ambjörnsson, Fredrik Westerlund, Ingegerd Adlerberth, Erik Kristiansson
Software Mentions: 1
Published: about 6 years ago

10.1099/mgen.0.000274

Putative novel cps loci in a large global collection of pneumococci
Cited by: 10
Author(s): Andries J. van Tonder, Rebecca A. Gladstone, Stephanie Lo, Moon H. Nahm, Mignon du Plessis, Jennifer Cornick, Brenda Kwambana-Adams, Shabir A. Madhi, Paulina A. Hawkins, Rachel Benisty, Ron Dagan, Dean Everett, Martín Antonio, Keith P. Klugman, Anne von Gottberg, Robert F. Breiman, Lesley McGee, Stephen D. Bentley
Software Mentions: 1
Published: over 5 years ago

10.1099/mgen.0.000609

Phylogenomic disentangling of the Bifidobacterium longum subsp. infantis taxon
Cited by: 9
Author(s): Chiara Tarracchini, Christian Milani, Gabriele Andrea Lugli, Leonardo Mancabelli, Federico Fontana, Giulia Alessandri, Giulia Longhi, Rosaria Anzalone, Alice Viappiani, Francesca Turroni, Douwe van Sinderen, Marco Ventura
Software Mentions: 1
Published: over 3 years ago

10.1099/mgen.0.000564

Genomics reveals the novel species placement of industrial contaminant isolates incorrectly identified as Burkholderia lata
Cited by: 2
Author(s): Edward Cunningham-Oakes, Tom Pointon, Barry Murphy, Stuart Campbell-Lee, Gordon Webster, Thomas R. Connor, Eshwar Mahenthiralingam
Software Mentions: 1
Published: over 3 years ago

10.1099/mgen.0.000143

Porcine commensal Escherichia coli: a reservoir for class 1 integrons associated with IS26
Cited by: 51
Author(s): Cameron J. Reid, Ethan R. Wyrsch, Piklu Roy Chowdhury, Tiziana Zingali, Mengmeng Liu, Aaron E. Darling, Toni A. Chapman, Steven P. Djordjevic
Software Mentions: 1
Published: almost 7 years ago

10.1099/mgen.0.000372

Identification of integrative and conjugative elements in pathogenic and commensal Neisseriaceae species via genomic distributions of DNA uptake sequence dialects
Cited by: 1
Author(s): Alex Hughes-Games, Adam P. Roberts, Sean A. Davis, David J. Hill
Software Mentions: 1
Published: over 4 years ago

10.1099/mgen.0.000411

Comparative genomic insights into Yersinia hibernica – a commonly misidentified Yersinia enterocolitica-like organism
Cited by: 0
Author(s): Scott V. Nguyen, Dechamma Mundanda Muthappa, Athmanya K. Eshwar, J. J. C. Buckley, Brenda Murphy, Roger Stephan, Angelika Lehner, Séamus Fanning
Software Mentions: 1
Published: about 4 years ago

10.1099/mgen.0.000328

DEN-IM: dengue virus genotyping from amplicon and shotgun metagenomic sequencing
Cited by: 0
Author(s): Catarina Mendes, Erley F. Lizarazo, Miguel P. Machado, Diogo N. Silva, Adriana Tami, Mário Ramirez, Natacha Couto, John W. A. Rossen, João André Carriço
Software Mentions: 1
Published: over 4 years ago

10.1002/mbo3.175

Algae–bacteria association inferred by 16S <scp>rDNA</scp> similarity in established microalgae cultures
Cited by: 29
Author(s): Dagmar Schwenk, Liisa Nohynek, Heiko Rischer
Software Mentions: 1
Published: over 10 years ago

10.1002/mbo3.742

Selecting lipopeptide‐producing, Fusarium‐ suppressing Bacillus spp.: Metabolomic and genomic probing of Bacillus velezensis NWUMFkBS10.5
Cited by: 28
Author(s): Adetomiwa Ayodele Adeniji, Oluwole Samuel Aremu, Olubukola Oluranti Babalola
Software Mentions: 1
Published: about 6 years ago

10.1002/mbo3.382

Isolation of Bdellovibrio sp. from soil samples in Mexico and their potential applications in control of pathogens
Cited by: 22
Author(s): Omotayo Opemipo Oyedara, Erick de Jesús de Luna-Santillana, Omar Olguín-Rodríguez, Xianwu Guo, Marco Antonio Mendoza-Villa, Jorge Luis Menchaca-Arredondo, Temidayo Oluyomi Elufisan, Javier A. Garza‐Hernández, Israel García-León, Mario A. Rodríguez Pérez
Software Mentions: 1
Published: over 8 years ago

10.1099/mic.0.058206-0

Molecular characterization of a novel mosaic tet(S/M) gene encoding tetracycline resistance in foodborne strains of Streptococcus bovis
Cited by: 20
Author(s): Simona N. Barile, Chiara Devirgiliis, Giuditta Perozzi
Software Mentions: 1
Published: about 12 years ago

10.1099/mic.0.046862-0

Interaction of Bacteroides fragilis and Bacteroides thetaiotaomicron with the kallikrein–kinin system
Cited by: 28
Author(s): Elizabeth C. Murphy, Matthias Mörgelin, Jakki C. Cooney, Inga-Maria Frick
Software Mentions: 1
Published: over 13 years ago

10.1099/mic.0.001003

Tn1 transposition in the course of natural transformation enables horizontal antibiotic resistance spread in Acinetobacter baylyi
Cited by: 7
Author(s): Julia Maria Kloos, Pål Jarle Johnsen, Klaus Harms
Software Mentions: 1
Published: almost 4 years ago

10.1099/mic.0.067280-0

Characterization of genes required for the pathogenicity of Pectobacterium carotovorum subsp. carotovorum Pcc21 in Chinese cabbage
Cited by: 58
Author(s): Dong Hwan Lee, Joong‐Soo Lim, Juneok Lee, Eunjung Roh, Kyu-Suk Jung, Mansoo Choi, Chang‐Sik Oh, Sangryeol Ryu, Jong‐Chul Yun, Sunggi Heu
Software Mentions: 1
Published: over 11 years ago

Projects: pypi: blast

Papers Mentioning blast 1,819