pypi: blast | Projects | Ecosyste.ms: Papers

10.1186/s12864-020-06851-0

Transcriptome profiling of venom gland from wasp species: de novo assembly, functional annotation, and discovery of molecular markers
Cited by: 4
Author(s): Junjie Tan, Wenbo Wang, Fan Wu, Yunming Li, Qing Fan
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0155472

Deciphering the Bacterial Microbiome in Huanglongbing-Affected Citrus Treated with Thermotherapy and Sulfonamide Antibiotics
Cited by: 26
Author(s): Chuanyu Yang, Charles A. Powell, Yongping Duan, Robert G. Shatters, Jingping Fang, Muqing Zhang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0093321

Development of a T Cell Receptor Targeting an HLA-A*0201 Restricted Epitope from the Cancer-Testis Antigen SSX2 for Adoptive Immunotherapy of Cancer
Cited by: 21
Author(s): Daniel Abate-Daga, Daniel E. Speiser, Nachimuthu Chinnasamy, Zhili Zheng, Hui Xu, Steven A. Feldman, Steven A. Rosenberg, Richard A. Morgan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0165875

Transcriptome Analysis and Comparison of Marmota monax and Marmota himalayana
Cited by: 8
Author(s): Yanan Liu, Baoju Wang, Lu Wang, Vikash Vikash, Qin Wang, Michael Roggendorf, Mengji Lu, Dongliang Yang, Jia Liu
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0018267

Global Expression Analysis Revealed Novel Gender-Specific Gene Expression Features in the Blood Fluke Parasite Schistosoma japonicum
Cited by: 28
Author(s): Xiangshu Piao, Pengfei Cai, Shuai Liu, Nan Hou, Lili Hao, Fan Yang, Heng Wang, Jianwei Wang, Qi Jin, Qijun Chen
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2091-12-22

Molecular Characterization of Chinese Hamster Cells Mutants Affected in Adenosine Kinase and Showing Novel Genetic and Biochemical Characteristics
Cited by: 11
Author(s): Xianying A. Cui, Tanvi Agarwal, Bhag Singh, Radhey S. Gupta
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0068452

Male-Biased Genes in Catfish as Revealed by RNA-Seq Analysis of the Testis Transcriptome
Cited by: 65
Author(s): Fenyong Sun, Shikai Liu, Xiaoyu Gao, Yanliang Jiang, Dayan A. Perera, Xiuli Wang, Chao Li, Luyang Sun, Jiaren Zhang, Ludmilla Kaltenboeck, Rex A. Dunham, Zhanjiang Liu
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0122728

The pbrB Gene Encodes a Laccase Required for DHN-Melanin Synthesis in Conidia of Talaromyces (Penicillium) marneffei
Cited by: 32
Author(s): Ariya Sapmak, Kylie J. Boyce, Alex Andrianopoulos, Nongnuch Vanittanakom
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0181471

Transcriptome analysis of the sea cucumber (Apostichopus japonicus) with variation in individual growth
Cited by: 18
Author(s): Lei Gao, Chongbo He, Xiangbo Bao, Meilin Tian, Zhen Ma
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0057233

Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing
Cited by: 95
Author(s): Runxuan Zhang, David Marshall, Glenn J. Bryan, Csaba Hornyik
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0098357

Echinococcus P29 Antigen: Molecular Characterization and Implication on Post-Surgery Follow-Up of CE Patients Infected with Different Species of the Echinococcus granulosus Complex
Cited by: 28
Author(s): Ghalia Boubaker, Bruno Gottstein, Andrew Hemphill, Hamouda Babba, Markus Spiliotis
Software Mentions: 1
Published: over 10 years ago

10.1099/jgv.0.000869

Tree shrew, a potential animal model for hepatitis C, supports the infection and replication of HCV in vitro and in vivo
Cited by: 29
Author(s): Yue Feng, Yuemei Feng, Caixia Lü, Yuanyuan Han, Li Liu, Xiaomei Sun, Jiejie Dai, Xin Xia
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-018-4676-z

Complex evolution of the GSTM gene family involves sharing of GSTM1 deletion polymorphism in humans and chimpanzees
Cited by: 11
Author(s): Marie Saitou, Yoko Satta, Ömer Gökçümen, Takafumi Ishida
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0022014

Cytochrome c-554 from Methylosinus trichosporium OB3b; a Protein That Belongs to the Cytochrome c2 Family and Exhibits a HALS-Type EPR Signal
Cited by: 6
Author(s): Espen Harbitz, Karin Andersson
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-019-5758-2

Comparative transcriptome analyses of genes involved in sulforaphane metabolism at different treatment in Chinese kale using full-length transcriptome sequencing
Cited by: 20
Author(s): Qiuyun Wu, Junwei Wang, Shuxiang Mao, Hongyan Xu, Qi Wu, Mantian Liang, Yǒulù Yuán, Mingyue Liu, Ke Huang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0085491

Comparative Genome Analysis of Campylobacter fetus Subspecies Revealed Horizontally Acquired Genetic Elements Important for Virulence and Niche Specificity
Cited by: 32
Author(s): Sabine Kienesberger, Hanna Sprenger, Stella Wolfgruber, Bettina Halwachs, Gerhard G. Thallinger, Guillermo I. Perez-Perez, Martin J. Blaser, Ellen L. Zechner, Gregor Gorkiewicz
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0196979

RNAi screening of subtracted transcriptomes reveals tumor suppression by taurine-activated GABAA receptors involved in volume regulation
Cited by: 0
Author(s): Camiel L C Wielders, Pim van Nierop, Tinke L. Vormer, Floris Foijer, Joanne Verheij, J.C. Lodder, Jesper B. Andersen, Huibert D. Mansvelder, Hein te Riele
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.13256

Circulation autoantibody against Lamin A/C in patients with Sjögren's syndrome
Cited by: 3
Author(s): Wen Zhang, Chunyan Zhang, Peng Chen, Chunhe Yang, Xianfeng Gan, Muhammad Hussain, Yiping Xun, Yaping Tian, Hongwu Du
Software Mentions: 1
Published: about 8 years ago

10.5713/ajas.17.0627

Monitoring conservation effects on a Chinese indigenous chicken breed using major histocompatibility complex B-G gene and DNA Barcodes
Cited by: 2
Author(s): Yan Tu, Shu JingTing, Gaige Ji, Ming Zhang, Jianmin Zou
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.14957

TRIP13 impairs mitotic checkpoint surveillance and is associated with poor prognosis in multiple myeloma
Cited by: 30
Author(s): Tao Yi, Guang Yang, Hongxing Yang, Dongli Song, Liangning Hu, Bingqian Xie, Houcai Wang, Lu Gao, Minjie Gao, Hui Xu, Zhijian Xu, Xiaosong Wu, Yiwen Zhang, Weiliang Zhu, Fenghuang Zhan, Jumei Shi
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0059592

Short-Term In-Vitro Expansion Improves Monitoring and Allows Affordable Generation of Virus-Specific T-Cells against Several Viruses for a Broad Clinical Application
Cited by: 34
Author(s): René Geyeregger, Christine Freimüller, Stefan Stevanović, Julia Stemberger, Gabor Mester, Jasmin Dmytrus, Thomas Lion, Hans‐Georg Rammensee, Gottfried Fischer, Britta Eiz‐Vesper, Anita Lawitschka, Susanne Matthes, Gerhard Fritsch
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0053276

Analysis of Virion-Incorporated Host Proteins Required for Herpes Simplex Virus Type 1 Infection through a RNA Interference Screen
Cited by: 52
Author(s): Camille Stegen, Yordanka Yakova, Daniel Henaff, Julien Nadjar, Johanne Duron, Roger Lippé
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0058251

Prolonged High Fat Diet Reduces Dopamine Reuptake without Altering DAT Gene Expression
Cited by: 90
Author(s): Jackson J. Cone, Elena H. Chartoff, David N. Potter, Stephanie Ebner, Mitchell F. Roitman
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0157558

Genome-Wide Identification and Expression Analysis of WRKY Transcription Factors under Multiple Stresses in Brassica napus
Cited by: 58
Author(s): Ying He, Shaoshuai Mao, Yulong Gao, Liying Zhu, Daoming Wu, Yixin Cui, Jiana Li, Wei Qian
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0113692

The Odorant Receptor Co-Receptor from the Bed Bug, Cimex lectularius L
Cited by: 19
Author(s): Immo A. Hansen, Stacy D. Rodriguez, Lisa L. Drake, David Price, Brittny N. Blakely, John I. Hammond, Hitoshi Tsujimoto, Erika Y. Monroy, William A. Maio, Alvaro Romero
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0042546

De Novo Sequencing and Transcriptome Analysis of the Central Nervous System of Mollusc Lymnaea stagnalis by Deep RNA Sequencing
Cited by: 90
Author(s): Hisayo Sadamoto, Hironobu Takahashi, Taketo Okada, Hiromichi Kenmoku, Masao Toyota, Yoshinori Asakawa
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0102869

Pattern Triggered Immunity (PTI) in Tobacco: Isolation of Activated Genes Suggests Role of the Phenylpropanoid Pathway in Inhibition of Bacterial Pathogens
Cited by: 15
Author(s): Ágnes Szatmári, Ágnes Zvara, Ágnes M. Móricz, E. Besenyei, Edit Szabó, Péter G. Ott, László G. Puskás, Zoltán Bozsó
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0077619

Melanotic Pathology and Vertical Transmission of the Gut Commensal Elizabethkingia meningoseptica in the Major Malaria Vector Anopheles gambiae
Cited by: 29
Author(s): Idir Akhouayri, Tibebu Habtewold, George K. Christophides
Software Mentions: 1
Published: about 11 years ago

10.1186/s12864-021-07673-4

Transcriptome analysis provides insights into copper toxicology in piebald naked carp (Gymnocypris eckloni)
Cited by: 3
Author(s): Wenjie Jin, Zixuan Li, Fengxia Ran, Shuxian Huang, Kefan Huo, Jianjuan Li, Qingshuo Han, Guojie Wang, Zhen-Ji Wang, Shenlong Jian, Kemao Li, Changzhong Li
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0025702

Mainstreams of Horizontal Gene Exchange in Enterobacteria: Consideration of the Outbreak of Enterohemorrhagic E. coli O104:H4 in Germany in 2011
Cited by: 35
Author(s): Oliver Bezuidt, Rian Pierneef, Kingdom Mncube, Gipsi Lima‐Mendez, Oleg N. Reva
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0034231

The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight
Cited by: 52
Author(s): Juan Li, Huangwei Chu, Yonghong Zhang, Tongmin Mou, Changyin Wu, Qifa Zhang, Jian Xu
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0152927

Identification of Multiple Stress Responsive Genes by Sequencing a Normalized cDNA Library from Sea-Land Cotton (Gossypium barbadense L.)
Cited by: 32
Author(s): Bin Zhou, Lin Zhang, Abid Ullah, Xin Jin, Xiyan Yang, Xianlong Zhang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0135868

Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula
Cited by: 118
Author(s): Jeff S. Bowman, Hugh W. Ducklow
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0006097

Boule Is Present in Fish and Bisexually Expressed in Adult and Embryonic Germ Cells of Medaka
Cited by: 76
Author(s): Hongyan Xu, Zhendong Li, Mingyou Li, Li Wang, Yunhan Hong
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0066370

Rapidly Evolving Genes and Stress Adaptation of Two Desert Poplars, Populus euphratica and P. pruinosa
Cited by: 38
Author(s): Jian Zhang, Penghui Xie, Martin Lascoux, Thomas R. Meagher, Jianquan Liu
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-015-2128-6

Identification of alternative splicing events by RNA sequencing in early growth tomato fruits
Cited by: 43
Author(s): Yuan Sun, Xianpei Han
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0109738

Comparative Transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 Provide Insights into Mechanisms of Stress Acclimation
Cited by: 41
Author(s): Konstantinos Billis, Maria Billini, H. James Tripp, Nikos C. Kyrpides, Konstantinos Mavromatis
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-14-534

Nannochloropsis plastid and mitochondrial phylogenomes reveal organelle diversification mechanism and intragenus phylotyping strategy in microalgae
Cited by: 52
Author(s): Li Wei, Xin Yi, Dongmei Wang, Xiaoyan Jing, Qian Zhou, Xiaoquan Su, Jun Jia, Kang Ning, Feng Chen, Qiang Hu, Jian Xu
Software Mentions: 1
Published: over 11 years ago

10.1099/jgv.0.001387

Analysis of genomic-length HBV sequences to determine genotype and subgenotype reference sequences
Cited by: 35
Author(s): Anna L McNaughton, Peter Revill, Margaret Littlejohn, Philippa C. Matthews, Azim Ansari
Software Mentions: 1
Published: over 4 years ago

10.1186/s13568-019-0809-2

An extreme halophilic xylanase from camel rumen metagenome with elevated catalytic activity in high salt concentrations
Cited by: 17
Author(s): Kamran Khalili Ghadikolaei, Elham Dasi Sangachini, Vasimeh Vahdatirad, Kambiz Akbari Noghabi, Hossein Shahbani Zahiri
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0062892

The Impact of Paralogy on Phylogenomic Studies – A Case Study on Annelid Relationships
Cited by: 51
Author(s): Torsten H. Struck
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0169777

Characterization and Functional Analysis of Five MADS-Box B Class Genes Related to Floral Organ Identification in Tagetes erecta
Cited by: 15
Author(s): Ye Ai, Chunyu Zhang, Yalin Sun, Weining Wang, Yan‐Hong He, Manzhu Bao
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-9-127

Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif
Cited by: 43
Author(s): Thomas R. Bürglin
Software Mentions: 1
Published: almost 17 years ago

10.1186/s43141-019-0004-5

GHRL gene-based genotyping of ovine and caprine breeds reveals highly polymorphic intronic sequences in Awassi sheep with several RNA motifs
Cited by: 12
Author(s): Mohammed Baqur S. Al‐Shuhaib, Mohammed Baqur S. Al‐Shuhaib, Israa Ali Fadhil, Thamer R. S. Aljubouri
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0008441

Switch Region for Pathogenic Structural Change in Conformational Disease and Its Prediction
Cited by: 7
Author(s): Xin Liu, Ya-Pu Zhao
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0078454

Autologous Antibody Capture to Enrich Immunogenic Viruses for Viral Discovery
Cited by: 16
Author(s): Bas B. Oude Munnink, Seyed Mohammad Jazaeri Farsani, Martin Deijs, J. F. J. Jonkers, Joost T. P. Verhoeven, Margareta Ieven, Herman Goossens, Menno D. de Jong, Ben Berkhout, Katherine Loens, Paul Kellam, Margreet Bakker, Marta Canuti, Matthew Cotten, Lia van der Hoek
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0201620

Anthracene biodegradation capacity of newly isolated rhizospheric bacteria Bacillus cereus S13
Cited by: 22
Author(s): Nadia Bibi, Muhammad Hamayun, Shaukat Khan, Amjad Iqbal, Badshah Islam, Farooq Shah, Muhammad Aaqil Khan, In‐Jung Lee
Software Mentions: 1
Published: over 6 years ago

10.1155/2018/5716518

Transcriptome Comparison Reveals Distinct Selection Patterns in Domesticated and Wild Agave Species, the Important CAM Plants
Cited by: 26
Author(s): Huang Xing, Bo Wang, Jingen Xi, Yajie Zhang, Chunping He, Jianhua Zheng, Jianming Gao, Helong Chen, Shiqing Zhang, Weihuai Wu, Yanqiong Liang, Kexian Yi
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0154061

Biochar, Bentonite and Zeolite Supplemented Feeding of Layer Chickens Alters Intestinal Microbiota and Reduces Campylobacter Load
Cited by: 54
Author(s): Tanka P. Prasai, Kerry B. Walsh, Surya P. Bhattarai, David J. Midmore, Thi Thu Hao Van, Robert J. Moore, Dragana Stanley
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0038809

Genome Fragmentation Is Not Confined to the Peridinin Plastid in Dinoflagellates
Cited by: 13
Author(s): Mari Espelund, Marianne A. Minge, Tove M. Gabrielsen, Alexander J. Nederbragt, Kamran Shalchian-Tabrizi, Christian Otis, Monique Turmel, Claude Lemieux, Kjetill S. Jakobsen
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0117342

Transcriptome Sequencing of Codonopsis pilosula and Identification of Candidate Genes Involved in Polysaccharide Biosynthesis
Cited by: 33
Author(s): Jian Gao, Dong Wang, Ling Cao, Huifeng Sun
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0047275

Colinearity and Similar Expression Pattern of Rice DREB1s Reveal Their Functional Conservation in the Cold-Responsive Pathway
Cited by: 76
Author(s): Donghai Mao, Caiyan Chen
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0121525

Cytosolic 5’-Nucleotidase II Interacts with the Leucin Rich Repeat of NLR Family Member Ipaf
Cited by: 17
Author(s): Federico Cividini, Maria Grazia Tozzi, Alvaro Galli, Rossana Pesi, Marcella Camici, Charles Dumontet, Lars Petter Jordheim, Simone Allegrini
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0096242

A Role of Rab29 in the Integrity of the Trans-Golgi Network and Retrograde Trafficking of Mannose-6-Phosphate Receptor
Cited by: 64
Author(s): Shicong Wang, Zexu Ma, Xiaohui Xu, Zhen Wang, Lixiang Sun, Yunhe Zhou, Xue Lin, Wanjin Hong, Tuanlao Wang
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0185830

A combined transcriptome and proteome analysis extends the allergome of house dust mite Dermatophagoides species
Cited by: 27
Author(s): Véronique Bordas‐Le Floch, Maxime Le Mignon, Lætitia Bussières, K. Jain, Armelle Martelet, Véronique Baron‐Bodo, Emmanuel Nony, Laurent Mascarell, Philippe Moingeon
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0115436

Molecular Evidence that Only Two Opsin Subfamilies, the Blue Light- (SWS2) and Green Light-Sensitive (RH2), Drive Color Vision in Atlantic Cod (Gadus morhua)
Cited by: 19
Author(s): Ragnhild Valen, Rolf B. Edvardsen, Anne Mette Søviknes, Øyvind Drivenes, Jon Vidar Helvik
Software Mentions: 1
Published: almost 10 years ago

10.1186/ar1731

Cited by: 50
Author(s): Anne-Sophie Rouzière, Christian Kneitz, Arumugam Palanichamy, Thomas Dörner, Hans‐Peter Tony
Software Mentions: 1
Published: almost 20 years ago

10.1371/journal.pone.0069890

Evaluation of Genome Sequencing Quality in Selected Plant Species Using Expressed Sequence Tags
Cited by: 25
Author(s): Lingfei Shangguan, Han jinsoo, Emrul Kayesh, Xin Sun, Changqing Zhang, Tariq Pervaiz, Xicheng Wen, Jinggui Fang
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0012338

Rapid Dopaminergic Modulation of the Fish Hypothalamic Transcriptome and Proteome
Cited by: 35
Author(s): Jason T. Popesku, Christopher J. Martyniuk, Nancy D. Denslow, Vance L. Trudeau
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0004277

Genetic Editing of HBV DNA by Monodomain Human APOBEC3 Cytidine Deaminases and the Recombinant Nature of APOBEC3G
Cited by: 71
Author(s): H. Mathieu, Denise Guétard, Rodolphe Suspène, Christophe Rusniok, Simon Wain‐Hobson, Jean‐Pierre Vartanian
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0171187

De novo transcriptome sequencing and analysis of male, pseudo-male and female yellow perch, Perca flavescens
Cited by: 10
Author(s): Yanhe Li, Hanping Wang, Hong Yao, Paul O’Bryant, Dean Rapp, Liang Guo, Eman A. Waly
Software Mentions: 1
Published: almost 8 years ago

10.1155/2015/824287

Significant Microsynteny with New Evolutionary Highlights Is Detected through Comparative Genomic Sequence Analysis of Maize CCCH IX Gene Subfamily
Cited by: 3
Author(s): Weijun Chen, Yang Zhao, Xiaojian Peng, Qing Dong, Jing Jin, Wei Zhou, Beijiu Cheng, Qibin Ma
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-016-2934-5

Automated detection of ncRNAs in the draft genome sequence of a colonial tunicate: the carpet sea squirt Didemnum vexillum
Cited by: 10
Author(s): Cristian A. Velandia-Huerto, Adriaan Gittenberger, Federico D. Brown, Peter F. Stadler, Clara Isabel Bermúdez-Santana
Software Mentions: 1
Published: about 8 years ago

10.1155/2017/8614160

Enriching Genomic Resources and Marker Development from Transcript Sequences ofJatropha curcasfor Microgravity Studies
Cited by: 8
Author(s): Wenlan Tian, Dev Paudel, Wagner A. Vendrame, Jianping Wang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0177606

Mitochondrial genome evolution in Alismatales: Size reduction and extensive loss of ribosomal protein genes
Cited by: 35
Author(s): Gitte Petersen, Argelia Cuenca, Athnanasios Zervas, Gregory T Ross, Sean W. Graham, Craig F. Barrett, Jerrold I. Davis, Ole Seberg
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0095384

The Microbial Diversity of Traditional Spontaneously Fermented Lambic Beer
Cited by: 182
Author(s): Freek Spitaels, Anneleen D. Wieme, Maarten Janssens, Maarten Aerts, Heide-Marie Daniel, Anita Van Landschoot, Luc De Vuyst, Peter Vandamme
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0072645

Secreted Phosphoprotein 24 kD (Spp24) and Spp14 Affect TGF-β Induced Bone Formation Differently
Cited by: 17
Author(s): Haijun Tian, Xiaojun Bi, Chenshuang Li, Ke Wei Zhao, Elsa J. Brochmann, Scott R. Montgomery, Bayan Aghdasi, Deyu Chen, Michael D. Daubs, Jeffrey C. Wang, Samuel S. Murray
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0080346

High Endemicity and Low Molecular Diversity of Hepatitis B Virus Infections in Pregnant Women in a Rural District of North Cameroon
Cited by: 48
Author(s): Alexandra Ducancelle, P. Abgueguen, Jacques Birguel, Waël Mansour, Adeline Pivert, Hélène Le Guillou‐Guillemette, Jean-Jacques Sobnangou, Amélie Rameau, Jean‐Marie Huraux, Françoise Lunel‐Fabiani
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0124507

The Development and Evaluation of a Loop-Mediated Isothermal Amplification Method for the Rapid Detection of Salmonella enterica serovar Typhi
Cited by: 30
Author(s): Fenxia Fan, Pengcheng Du, Biao Kan, Mei Yan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0143280

Identification of 14-3-3 Family in Common Bean and Their Response to Abiotic Stress
Cited by: 23
Author(s): Ruihua Li, Xiaotong Jiang, Dong Jin, Sangeeta Dhaubhadel, Shaomin Bian, Xuyan Li
Software Mentions: 1
Published: almost 9 years ago

10.1155/2020/8844811

Identification and Characterization of a Newly Isolated Chitinase-Producing Strain Bacillus licheniformis SSCL-10 for Chitin Degradation
Cited by: 8
Author(s): Abirami Sasi, Nagarajan Duraipandiyan, Marikani Kannan, Sugapriya Dhanasekaran, Noura Al-Dayan, Divya Venugopal
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-017-3727-1

Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages: towards a better understanding of the functions of multiple duplicates
Cited by: 17
Author(s): Lucie Marandel, Stéphane Panserat, Élisabeth Plagnes-Juan, Eva Arbenoits, José L. Soengas, Julien Bobe
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0211989

Nocardia polymerase chain reaction (PCR)-based assay performed on bronchoalveolar lavage fluid after lung transplantation: A prospective pilot study
Cited by: 17
Author(s): Julien Coussement, David Lebeaux, Najla El Bizri, Vincent Claes, Michel Kohnen, Deborah Steensels, Isabelle Étienne, Hélène Salord, Emmanuelle Bergeron, Verónica Rodríguez-Nava
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0054084

40S Ribosome Biogenesis Co-Factors Are Essential for Gametophyte and Embryo Development
Cited by: 69
Author(s): Sandra Missbach, Benjamin L. Weis, Roman Martin, Stefan Simm, Markus T. Bohnsack, Enrico Schleiff
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12864-019-5501-z

Transcriptomic profiling of the flower scent biosynthesis pathway of Cymbidium faberi Rolfe and functional characterization of its jasmonic acid carboxyl methyltransferase gene
Cited by: 21
Author(s): Qi Xu, Songtai Wang, Hao Hong, Yin Zhou
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-10-24

The G protein-coupled receptor subset of the dog genome is more similar to that in humans than rodents
Cited by: 48
Author(s): Tatjana Haitina, Robert Fredriksson, Steven M. Foord, Helgi B. Schiöth, David E. Gloriam
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2164-11-249

Small RNA expression and strain specificity in the rat
Cited by: 71
Author(s): Sam E.V. Linsen, Elzo de Wit, Ewart de Bruijn, Edwin Cuppen
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0181037

Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield
Cited by: 8
Author(s): Shukun Jiang, Shuang Sun, Liangming Bai, Guohua Ding, Tongtong Wang, Tianshu Xia, Hui Jiang, Xijuan Zhang, Fengming Zhang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-019-5945-1

Integrated transcriptome, small RNA, and degradome analysis reveals the complex network regulating starch biosynthesis in maize
Cited by: 14
Author(s): Xiaocong Zhang, Sidi Xie, Jienan Han, Yu Zhou, Chang Liu, Zhiqiang Zhou, Feifei Wang, Zixiang Cheng, Junjie Zhang, Yu‐Feng Hu, Hao Zhang, Mingshun Li, Degui Zhang, Hongjun Yong, Yubi Huang, Jianfeng Weng, Xinhai Li
Software Mentions: 1
Published: over 5 years ago

10.1155/2015/782635

Analysis ofPolygala tenuifoliaTranscriptome and Description of Secondary Metabolite Biosynthetic Pathways by Illumina Sequencing
Cited by: 10
Author(s): Hua Tian, Xiaojun Xu, Fusheng Zhang, Yaoqin Wang, Song Guo, Xuemei Qin, Guanhua Du
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0200511

Discovery and characterization of novel Aspergillus fumigatus mycoviruses
Cited by: 38
Author(s): Jan Zoll, Paul E. Verweij, Willem J. G. Melchers
Software Mentions: 1
Published: over 6 years ago

10.1155/2019/8987436

Comparative Genomic Analysis of Rhodococcus equi: An Insight into Genomic Diversity and Genome Evolution
Cited by: 6
Author(s): Jianchao Ying, Jun Ye, Teng Xu, Qian Wang, Qiyu Bao, Aifang Li
Software Mentions: 1
Published: almost 5 years ago

10.1155/2013/857986

Identification of Cassava MicroRNAs under Abiotic Stress
Cited by: 41
Author(s): Carolina Ballén‐Taborda, Germán Plata, Sarah Ayling, Fausto Rodríguez-Zapata, Luís Augusto Becerra López-Lavalle, Jorge Duitama, Joseph M. Tohme
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0117472

Androgen Receptor and Histone Lysine Demethylases in Ovine Placenta
Cited by: 32
Author(s): Ellane R. Cleys, Jennifer L. Halleran, Vanessa A. Enriquez, Juliano Coelho da Silveira, Rachel C. West, Quinton A. Winger, Russell V. Anthony, J.E. Bruemmer, Colin M. Clay, Gerrit J. Bouma
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0030591

Mutational Robustness of Gene Regulatory Networks
Cited by: 13
Author(s): Aalt D. J. van Dijk, S. van Mourik, Roeland C. H. J. van Ham
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0201880

Interaction between the cellular E3 ubiquitin ligase SIAH-1 and the viral immediate-early protein ICP0 enables efficient replication of Herpes Simplex Virus type 2 in vivo
Cited by: 4
Author(s): Julia Stephanie Czechowicz, Claus-Henning Nagel, Maike Voges, Michael Spohn, Martha M. Eibl, Joachim Hauber
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.9611

Long noncoding RNA ZFAS1 promotes gastric cancer cells proliferation by epigenetically repressing KLF2 and NKD2 expression
Cited by: 126
Author(s): Fengqi Nie, Xiang Yu, Ming‐De Huang, Yunfei Wang, Min Xie, Hongwei Ma, Zhaoxia Wang, Wei De, Ming Sun
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0172308

Viruses in case series of tumors: Consistent presence in different cancers in the same subject
Cited by: 6
Author(s): Laila Sara Arroyo Mühr, Maria Hortlund, Zurab Bzhalava, Sara Nordqvist Kleppe, Davit Bzhalava, Emilie Hultin, Joakim Dillner
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0077217

Transcriptomic Analysis of Paulownia Infected by Paulownia Witches'-Broom Phytoplasma
Cited by: 65
Author(s): Hai-Qing Mou, Jie Lu, Shuifang Zhu, Cai-li Lin, Guozhong Tian, Xiaoyong Xu, Wenjun Zhao
Software Mentions: 1
Published: about 11 years ago

10.1186/1471-2164-12-548

Genetic variability of transcript abundance in pig peri-mortem skeletal muscle: eQTL localized genes involved in stress response, cell death, muscle disorders and metabolism
Cited by: 21
Author(s): Laurence Liaubet, Valérie Lobjois, Thomas Faraut, Aurélie Tircazes, Francis Benne, Nathalie Iannuccelli, José Luís Pires, Jérôme Glénisson, Annie Robic, Pascale Le Roy, Magali SanCristobal, Pierre Chérel
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0065682

Lipoprotein FtsB in Streptococcus pyogenes Binds Ferrichrome in Two Steps with Residues Tyr137 and Trp204 as Critical Ligands
Cited by: 7
Author(s): Hui Li, Nan Li, Qian Xu, Chuan-Le Xiao, Hongcui Wang, Zhong Guo, Jing Zhang, Xia Sun, Qing-Yu He
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0009083

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes
Cited by: 72
Author(s): Matthew R. Henn, Matthew B. Sullivan, Nicole Stange-Thomann, Marcia S. Osburne, Aaron M. Berlin, Libusha Kelly, Chandri Yandava, Chinnappa D. Kodira, Qiandong Zeng, Michael Weiand, Todd Sparrow, Sakina Saif, Georgia Giannoukos, Sarah Young, Chad Nusbaum, Bruce W. Birren, Sallie W. Chisholm
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12864-016-3244-7

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma
Cited by: 31
Author(s): Nicolás Bellora, Martín Moliné, Márcia David-Palma, Marco A. Coelho, Chris Todd Hittinger, José Paulo Sampaio, Paula Gonçalves, Diego Libkind
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-13-88

Genomic variation in Salmonella enterica core genes for epidemiological typing
Cited by: 71
Author(s): Pimlapas Leekitcharoenphon, Oksana Lukjancenko, Carsten Friis, Frank Møller Aarestrup, David W. Ussery
Software Mentions: 1
Published: over 12 years ago

10.1038/s41419-021-03829-y

Recovery of human gut microbiota genomes with third-generation sequencing
Cited by: 10
Author(s): Yanfei Li, Yueling Jin, Jianming Zhang, Haoying Pan, Wu Lan, Dingsheng Liu, Jinlong Liu, Jing Hu, Junwei Shen
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-018-1078-8

Bone marrow infiltrated Lnc-INSR induced suppressive immune microenvironment in pediatric acute lymphoblastic leukemia
Cited by: 22
Author(s): Yaping Wang, Xiaoyun Yang, Xiaoyan Sun, Liucheng Rong, Meiyun Kang, Peng Wu, Xiaohui Ji, Rufeng Lin, Jie Huang, Yue Xue, Yongjun Fang
Software Mentions: 1
Published: about 6 years ago

10.1186/1747-1028-7-21

Epitope of titin A-band-specific monoclonal antibody Tit1 5 H1.1 is highly conserved in several Fn3 domains of the titin molecule. Centriole staining in human, mouse and zebrafish cells
Cited by: 9
Author(s): Aavo-Valdur Mikelsaar, Alar Sünter, Ruth Mikelsaar, Peeter Toomik, Anu Kǒiveer, Imre Mikelsaar, Erkki Juronen
Software Mentions: 1
Published: almost 13 years ago

10.1111/cmi.12050

Diversion of phagosome trafficking by pathogenic <scp>R</scp> hodococcus equi depends on mycolic acid chain length
Cited by: 22
Author(s): Tobias Sydor, Kristine von Bargen, Fong‐Fu Hsu, Gitta Huth, Otto Holst, Jens Wohlmann, Ulrike Becken, Tobias Dykstra, Kristina Söhl, Buko Lindner, John F. Prescott, Ulrich E. Schaible, Olaf Utermöhlen, Albert Haas
Software Mentions: 1
Published: about 12 years ago

10.1111/j.1462-5822.2008.01162.x

Expression and processing ofPlasmodium bergheiSERA3 during liver stages
Cited by: 45
Author(s): Anja Schmidt-Christensen, Angelika Sturm, Sebastian Horstmann, Volker Heussler
Software Mentions: 1
Published: over 16 years ago

10.1111/j.1462-5822.2010.01531.x

The E Block motif is associated withLegionella pneumophilatranslocated substrates
Cited by: 165
Author(s): Lili Huang, Dana Boyd, Whitney Amyot, Andrew D. Hempstead, Zhao‐Qing Luo, Tamara J. O’Connor, Cui Chen, Matthias P. Machner, Timothy P. Montminy, Ralph R. Isberg
Software Mentions: 1
Published: about 14 years ago

Projects: pypi: blast

Papers Mentioning blast 1,819