Ecosyste.ms: Papers

10.1099/ijs.0.010249-0

Construction of an interactive online phytoplasma classification tool, iPhyClassifier, and its application in analysis of the peach X-disease phytoplasma group (16SrIII)
Cited by: 463
Author(s): Yan Zhao, Wei Wei, Ing‐Ming Lee, Jonathan Shao, Xiaobing Suo, Robert E. Davis
Software Mentions: 1
Published: over 15 years ago

10.1099/ijsem.0.004866

Mangrovivirga cuniculi gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family Mangrovivirgaceae fam. nov.
Cited by: 12
Author(s): Fatmah O. Sefrji, Grégoire Michoud, Ramona Marasco, Giuseppe Merlino, Daniele Daffonchio
Software Mentions: 1
Published: over 3 years ago

10.1099/ijsem.0.003935

Division of the genus Chryseobacterium: Observation of discontinuities in amino acid identity values, a possible consequence of major extinction events, guides transfer of nine species to the genus Epilithonimonas, eleven species to the genus Kaistella, and three species to the genus Halpernia gen. nov., with description of Kaistella daneshvariae sp. nov. and Epilithonimonas vandammei sp. nov. derived from clinical specimens
Cited by: 201
Author(s): Ainsley Nicholson, Christopher A. Gulvik, Anne M. Whitney, Ben W. Humrighouse, Melissa Bell, B. Holmes, A G Steigerwalt, Aaron Villarma, Mili Sheth, Dhwani Batra, Lori A. Rowe, Mark Burroughs, Jessica C Pryor, Jean‐François Bernardet, Celia J. Hugo, Peter Kämpfer, Jeffrey D. Newman, John R. McQuiston
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.10469

VPS34 regulates TSC1/TSC2 heterodimer to mediate RheB and mTORC1/S6K1 activation and cellular transformation
Cited by: 21
Author(s): Nishant Mohan, Yi Shen, Milos Dokmanovic, Yuichi Endo, Dianne S. Hirsch, Wen Jin Wu
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.13256

Circulation autoantibody against Lamin A/C in patients with Sjögren's syndrome
Cited by: 3
Author(s): Wen Zhang, Chunyan Zhang, Peng Chen, Chunhe Yang, Xianfeng Gan, Muhammad Hussain, Yiping Xun, Yaping Tian, Hongwu Du
Software Mentions: 1
Published: about 8 years ago

10.5812/ircmj.4024

Sequence Characterization of cDNA Sequence of Encoding of an Antimicrobial Peptide With No Disulfide Bridge from the Iranian Mesobuthus Eupeus Venomous Glands
Cited by: 5
Author(s): Ahmad Farajzadeh Sheikh, Abbas Jolodar, Shamsedin Ghaemmaghami
Software Mentions: 1
Published: almost 12 years ago

10.3390/ijerph13030318

The Inflammation Response to DEHP through PPARγ in Endometrial Cells
Cited by: 18
Author(s): Qiansheng Huang, Huanteng Zhang, Yajie Chen, Yulang Chi, Shuang Dong
Software Mentions: 1
Published: over 8 years ago

10.3390/ijerph17020439

Diversity and Antimicrobial Activity of Culturable Fungal Endophytes in Solanum mauritianum
Cited by: 14
Author(s): Sharon Pauline Pelo, Vuyo Mavumengwana, Ezekiel Green
Software Mentions: 1
Published: almost 5 years ago

10.3390/ijerph18115515

Characterization of a Lactiplantibacillus plantarum R23 Isolated from Arugula by Whole-Genome Sequencing and Its Bacteriocin Production Ability
Cited by: 16
Author(s): Joana Barbosa, Helena Albano, Beatríz Silva, Maria Helena Almeida, Teresa Nogueira, Paula Teixeira
Software Mentions: 1
Published: over 3 years ago

10.3390/ijerph18126275

Lack of Zika Virus and Other Recognized Flaviviruses among the Mosquito Vectors during and Post the Hajj Mass Gathering
Cited by: 1
Author(s): Saber Yezli, Muhammad Yasir, Yara Yassin, Afnan Almazrua, Tagreed L. Alsubhi, Norah A. Othman, Abdiasiis Omar, Abdelmohsin Mo Abdoon, Yousif Eldirdiry Elamin, Abuzaid Abuzaid, Turki Ghazi Bafaraj, Hassen Alzahrani, Sameer Almahmoodi, Hussam Alzahrani, Kingsley Bieh, B. M. Alotaibi, Anas Khan, Mohammed Alzahrani, Esam I. Azhar
Software Mentions: 1
Published: over 3 years ago

10.1099/jmmcr.0.005137

Ignavigranum ruoffiae, a rare pathogen that caused a skin abscess
Cited by: 2
Author(s): Adriana N. De Paulis, Eugenia Bertona, Miguel Gutiérrez, María Soledad Ramírez, Carlos Vay, Silvia C. Predari
Software Mentions: 1
Published: almost 7 years ago

10.1099/jmmcr.0.005136

First confirmed case of nasal pythiosis in a horse in Thailand
Cited by: 7
Author(s): Walaiporn Tonpitak, Watcharapol Pathomsakulwong, Chulabha Sornklien, Theerapong Krajaejun, Suppathat Wutthiwithayaphong
Software Mentions: 1
Published: almost 7 years ago

10.1099/jmmcr.0.004218

Case of Fonsecaea nubica chromoblastomycosis from the French territory of Mayotte
Cited by: 6
Author(s): Estelle Cateau, V. Cante, Dea Garcia Hermoso, Marie‐Hélène Rodier
Software Mentions: 1
Published: almost 10 years ago

10.1099/jmmcr.0.005149

Total nephrectomy following Corynebacterium coyleae urinary tract infection
Cited by: 5
Author(s): Claudia Barberis, Eduardo A. Montalvo, Soledad Imas, Germán Matías Traglia, Marisa Almuzara, Carlos Hernán Rodríguez, Ángela Famiglietti, Octavio Mazzocchi, Carlos Vay
Software Mentions: 1
Published: about 6 years ago

10.1099/jmmcr.0.005175

Post-traumatic endophthalmitis caused by Nocardia nova
Cited by: 8
Author(s): Jesús Rodríguez‐Lozano, Carlos Armiñanzas Castillo, Carlos Ruiz de Alegría Puig, Juan Antonio Ventosa Ayarza, María Carmen Fariñas, Jesús Agüero, Jorge Calvo
Software Mentions: 1
Published: almost 6 years ago

10.1673/031.010.11401

Construction and Application of an Electronic Spatiotemporal Expression Profile and Gene Ontology Analysis Platform Based on the EST Database of the Silkworm,Bombyx mori
Cited by: 4
Author(s): Li Gan, Wenyu Zhang, Yan-shan Niu, Lina Xu, Jian Xi, Ming-Ming Ji, Shiqiang Xu
Software Mentions: 1
Published: over 14 years ago

10.1673/031.007.1301

16thInternational Ecdysone Workshop: July 10–14, 2006, Ghent University, Belgium
Cited by: 3
Author(s): Organized by, Xavier Bellés, I. M. L. Billas, Peter Cherbas, Jean‐Paul Delbecque, Tarlochan S. Dhadialla, Haruchiko Fujiwara, Ronald J. Hill, Kiyoshi Hiruma, René Hermann, Kostas Iatrou, Jan Koolman, René Lafont, Jean‐Antoine Lepesant, Yoshiaki Nakagawa, Reddy Palli, Alexander S. Raikhel, Lynn M. Riddiford, Huw H. Rees, František Sehnal, Karl Slama, Guy Smagghe, Kluas-Dieter Spindler, C.G.H. Steel, Luc Swevers, Carl S. Thummel
Software Mentions: 1
Published: over 17 years ago

10.1093/jisesa/ieaa033

Characterization of an Ecdysteroid-Regulated 16 kDa Protein Gene in Chinese Oak Silkworm, Antheraea pernyi (Lepidoptera: Saturniidae)
Cited by: 2
Author(s): Miaomiao Chen, Liang Zhong, Chen Zhao, Fengcheng Wang, Wan-Jie Ji, Bo Zhang, Shu-Yu Liu, Yanping Liu, Xisheng Li
Software Mentions: 1
Published: over 4 years ago

10.1093/jisesa/ieab072

Reference Gene Selection for Analyzing the Transcription Patterns of Two Fatty Acyl-CoA Reductase Genes From <i>Paracoccus marginatus</i> (Hemiptera: Pseudococcidae)
Cited by: 2
Author(s): Xiao Liang, Qing Chen, Chunling Wu, Ying Liu, Zhiling Han, Mufeng Wu
Software Mentions: 1
Published: about 3 years ago

10.1673/031.011.13401

Mining and Characterization of Sequence Tagged Microsatellites from the Brown Planthopper<i>Nilaparvata lugens</i>
Cited by: 15
Author(s): Jing‐Tao Sun, Yankai Zhang, Ge Cheng, Xia Hong
Software Mentions: 1
Published: about 13 years ago

10.1099/jmm.0.000622

Genome sequence analysis of emm89 Streptococcus pyogenes strains causing infections in Scotland, 2010–2016
Cited by: 16
Author(s): Stephen B. Beres, Randall J. Olsen, Matthew Ojeda Saavedra, Roisin Ure, Arlene Reynolds, Diane Lindsay, Andrew Smith, James M. Musser
Software Mentions: 1
Published: almost 7 years ago

10.1099/jmm.0.001001

Sequence similarity searches for morphine biosynthesis enzymes in bacteria yield putative targets for understanding associations between infection and opiate administration
Cited by: 2
Author(s): Shing Hei Zhan, Leon French
Software Mentions: 1
Published: over 5 years ago

10.1099/jmm.0.001329

Immunomodulatory streptococci that inhibit CXCL8 secretion and NFκB activation are common members of the oral microbiota
Cited by: 3
Author(s): Sarah L. Myers, Thuy Do, Josephine L. Meade, Aradhna Tugnait, Jon J Vernon, Jelena Pistolic, Robert E. W. Hancock, Philip Marsh, Harsh M. Trivedi, Dandan Chen, Deirdre DeVine
Software Mentions: 1
Published: over 3 years ago

10.1099/jmm.0.001351

Whole genome sequencing of a clinical drug resistant Candida albicans isolate reveals known and novel mutations in genes involved in resistance acquisition mechanisms
Cited by: 5
Author(s): Roy A. Khalaf, Nour Fattouh, Matej Medvecký, Jaroslav Hrabák
Software Mentions: 1
Published: over 3 years ago

10.1099/jmm.0.000474

Carriage of extended-spectrum beta-lactamase-producing Enterobacteriaceae in HIV-infected children in Zimbabwe
Cited by: 20
Author(s): Stephanie Wilmore, K Kranzer, Andrea Williams, Beauty Makamure, Agness Farai Nhidza, Justin Mayini, Tsitsi Bandason, John Metcalfe, Mark P. Nicol, Indran Balakrishnan, Matthew J. Ellington, Neil Woodford, Susan Hopkins, Timothy D. McHugh, RA Ferrand
Software Mentions: 1
Published: over 7 years ago

10.1099/jmm.0.000546

Novel adenoviruses detected in British mustelids, including a unique Aviadenovirus in the tissues of pine martens (Martes martes)
Cited by: 10
Author(s): David H. Walker, William F. Gregory, Dylan Turnbull, Mara Rocchi, Anna Meredith, Adrian Philbey, Colin Sharp
Software Mentions: 1
Published: over 7 years ago

10.1099/jmm.0.000765

Molecular characterization of serogroup 19 Streptococcus pneumoniae in the Czech Republic in the post-vaccine era
Cited by: 8
Author(s): Helena Žemličková, Lucia Mališová, Petra Španělová, Vladislav Jakubů, Jana Kozáková, Martin Musílek, Matej Medvecký
Software Mentions: 1
Published: over 6 years ago

10.1007/s00239-021-10015-3

Genome Scan for Variable Genes Involved in Environmental Adaptations of Nubian Ibex
Cited by: 0
Author(s): Vivien J Chebii, Emmanuel Mpolya, Samuel O. Oyola, Antoinette Kotzé, Jean-Baka Domelevo Entfellner, J. Musembi Mutuku
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0109738

Comparative Transcriptomics between Synechococcus PCC 7942 and Synechocystis PCC 6803 Provide Insights into Mechanisms of Stress Acclimation
Cited by: 41
Author(s): Konstantinos Billis, Maria Billini, H. James Tripp, Nikos C. Kyrpides, Konstantinos Mavromatis
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0066370

Rapidly Evolving Genes and Stress Adaptation of Two Desert Poplars, Populus euphratica and P. pruinosa
Cited by: 38
Author(s): Jian Zhang, Penghui Xie, Martin Lascoux, Thomas R. Meagher, Jianquan Liu
Software Mentions: 1
Published: over 11 years ago

10.18632/oncotarget.14957

TRIP13 impairs mitotic checkpoint surveillance and is associated with poor prognosis in multiple myeloma
Cited by: 30
Author(s): Tao Yi, Guang Yang, Hongxing Yang, Dongli Song, Liangning Hu, Bingqian Xie, Houcai Wang, Lu Gao, Minjie Gao, Hui Xu, Zhijian Xu, Xiaosong Wu, Yiwen Zhang, Weiliang Zhu, Fenghuang Zhan, Jumei Shi
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0006097

Boule Is Present in Fish and Bisexually Expressed in Adult and Embryonic Germ Cells of Medaka
Cited by: 76
Author(s): Hongyan Xu, Zhendong Li, Mingyou Li, Li Wang, Yunhan Hong
Software Mentions: 1
Published: over 15 years ago

10.7554/eLife.04106

Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages
Cited by: 113
Author(s): Florence Caro, Vida Ahyong, Miguel Betegon, Joseph L. DeRisi
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0135868

Microbial Communities Can Be Described by Metabolic Structure: A General Framework and Application to a Seasonally Variable, Depth-Stratified Microbial Community from the Coastal West Antarctic Peninsula
Cited by: 118
Author(s): Jeff S. Bowman, Hugh W. Ducklow
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0152927

Identification of Multiple Stress Responsive Genes by Sequencing a Normalized cDNA Library from Sea-Land Cotton (Gossypium barbadense L.)
Cited by: 32
Author(s): Bin Zhou, Lin Zhang, Abid Ullah, Xin Jin, Xiyan Yang, Xianlong Zhang
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.00171

Elba, a novel developmentally regulated chromatin boundary factor is a hetero-tripartite DNA binding complex
Cited by: 44
Author(s): Tsutomu Aoki, Ali Sarkeshik, John R. Yates, Paul Schedl
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0034231

The Rice HGW Gene Encodes a Ubiquitin-Associated (UBA) Domain Protein That Regulates Heading Date and Grain Weight
Cited by: 52
Author(s): Juan Li, Huangwei Chu, Yonghong Zhang, Tongmin Mou, Changyin Wu, Qifa Zhang, Jian Xu
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.50292

Micronuclei-based model system reveals functional consequences of chromothripsis in human cells
Cited by: 56
Author(s): Maja Kneissig, Kristina Keuper, Mirjam S. de Pagter, Markus J. van Roosmalen, Jana Martin, Hannah Otto, Verena Passerini, Aline Campos Sparr, Ivo Renkens, Fenna Kropveld, Anand Vasudevan, Jason M. Sheltzer, Wigard P. Kloosterman, Zuzana Storchová
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.18318

Folded gastrulation and T48 drive the evolution of coordinated mesoderm internalization in flies
Cited by: 22
Author(s): Silvia Urbansky, Paula González Avalos, Maike Wosch, Steffen Lemke
Software Mentions: 1
Published: about 8 years ago

10.3390/ijms130810154

The Opuntia streptacantha OpsHSP18 Gene Confers Salt and Osmotic Stress Tolerance in Arabidopsis thaliana
Cited by: 11
Author(s): S. Salas-Muñoz, Gracia Goméz‐Anduro, Pablo Delgado‐Sánchez, Margarita Rodríguez‐Kessler, Juan Francisco Jiménez-Bremont
Software Mentions: 1
Published: over 12 years ago

10.3390/ijms14058985

Characteristic of the Pepper CaRGA2 Gene in Defense Responses against Phytophthora capsici Leonian
Cited by: 34
Author(s): Yingli Zhang, Qingli Jia, Dawei Li, Jun-E Wang, Yanxu Yin, Zhen-Hui Gong
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms141020204

OsPOP5, A Prolyl Oligopeptidase Family Gene from Rice Confers Abiotic Stress Tolerance in Escherichia coli
Cited by: 23
Author(s): Cun-Mei Tan, Rongjun Chen, Jianhua Zhang, Xiaoling Gao, Lihua Li, Pingrong Wang, Xiping Deng, Zhengjun Xu
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0200511

Discovery and characterization of novel Aspergillus fumigatus mycoviruses
Cited by: 38
Author(s): Jan Zoll, Paul E. Verweij, Willem J. G. Melchers
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0117472

Androgen Receptor and Histone Lysine Demethylases in Ovine Placenta
Cited by: 32
Author(s): Ellane R. Cleys, Jennifer L. Halleran, Vanessa A. Enriquez, Juliano Coelho da Silveira, Rachel C. West, Quinton A. Winger, Russell V. Anthony, J.E. Bruemmer, Colin M. Clay, Gerrit J. Bouma
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0030591

Mutational Robustness of Gene Regulatory Networks
Cited by: 13
Author(s): Aalt D. J. van Dijk, S. van Mourik, Roeland C. H. J. van Ham
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0201880

Interaction between the cellular E3 ubiquitin ligase SIAH-1 and the viral immediate-early protein ICP0 enables efficient replication of Herpes Simplex Virus type 2 in vivo
Cited by: 4
Author(s): Julia Stephanie Czechowicz, Claus-Henning Nagel, Maike Voges, Michael Spohn, Martha M. Eibl, Joachim Hauber
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0172308

Viruses in case series of tumors: Consistent presence in different cancers in the same subject
Cited by: 6
Author(s): Laila Sara Arroyo Mühr, Maria Hortlund, Zurab Bzhalava, Sara Nordqvist Kleppe, Davit Bzhalava, Emilie Hultin, Joakim Dillner
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0077217

Transcriptomic Analysis of Paulownia Infected by Paulownia Witches'-Broom Phytoplasma
Cited by: 65
Author(s): Hai-Qing Mou, Jie Lu, Shuifang Zhu, Cai-li Lin, Guozhong Tian, Xiaoyong Xu, Wenjun Zhao
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0065682

Lipoprotein FtsB in Streptococcus pyogenes Binds Ferrichrome in Two Steps with Residues Tyr137 and Trp204 as Critical Ligands
Cited by: 7
Author(s): Hui Li, Nan Li, Qian Xu, Chuan-Le Xiao, Hongcui Wang, Zhong Guo, Jing Zhang, Xia Sun, Qing-Yu He
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0009083

Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes
Cited by: 72
Author(s): Matthew R. Henn, Matthew B. Sullivan, Nicole Stange-Thomann, Marcia S. Osburne, Aaron M. Berlin, Libusha Kelly, Chandri Yandava, Chinnappa D. Kodira, Qiandong Zeng, Michael Weiand, Todd Sparrow, Sakina Saif, Georgia Giannoukos, Sarah Young, Chad Nusbaum, Bruce W. Birren, Sallie W. Chisholm
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0181037

Resequencing and variation identification of whole genome of the japonica rice variety "Longdao24" with high yield
Cited by: 8
Author(s): Shukun Jiang, Shuang Sun, Liangming Bai, Guohua Ding, Tongtong Wang, Tianshu Xia, Hui Jiang, Xijuan Zhang, Fengming Zhang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0054084

40S Ribosome Biogenesis Co-Factors Are Essential for Gametophyte and Embryo Development
Cited by: 69
Author(s): Sandra Missbach, Benjamin L. Weis, Roman Martin, Stefan Simm, Markus T. Bohnsack, Enrico Schleiff
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41419-021-03829-y

Recovery of human gut microbiota genomes with third-generation sequencing
Cited by: 10
Author(s): Yanfei Li, Yueling Jin, Jianming Zhang, Haoying Pan, Wu Lan, Dingsheng Liu, Jinlong Liu, Jing Hu, Junwei Shen
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-018-1078-8

Bone marrow infiltrated Lnc-INSR induced suppressive immune microenvironment in pediatric acute lymphoblastic leukemia
Cited by: 22
Author(s): Yaping Wang, Xiaoyun Yang, Xiaoyan Sun, Liucheng Rong, Meiyun Kang, Peng Wu, Xiaohui Ji, Rufeng Lin, Jie Huang, Yue Xue, Yongjun Fang
Software Mentions: 1
Published: about 6 years ago

10.1186/1747-1028-7-21

Epitope of titin A-band-specific monoclonal antibody Tit1 5 H1.1 is highly conserved in several Fn3 domains of the titin molecule. Centriole staining in human, mouse and zebrafish cells
Cited by: 9
Author(s): Aavo-Valdur Mikelsaar, Alar Sünter, Ruth Mikelsaar, Peeter Toomik, Anu Kǒiveer, Imre Mikelsaar, Erkki Juronen
Software Mentions: 1
Published: almost 13 years ago

10.1111/cmi.12050

Diversion of phagosome trafficking by pathogenic <i> <scp>R</scp> hodococcus equi </i> depends on mycolic acid chain length
Cited by: 22
Author(s): Tobias Sydor, Kristine von Bargen, Fong‐Fu Hsu, Gitta Huth, Otto Holst, Jens Wohlmann, Ulrike Becken, Tobias Dykstra, Kristina Söhl, Buko Lindner, John F. Prescott, Ulrich E. Schaible, Olaf Utermöhlen, Albert Haas
Software Mentions: 1
Published: about 12 years ago

10.1111/j.1462-5822.2008.01162.x

Expression and processing of<i>Plasmodium berghei</i>SERA3 during liver stages
Cited by: 45
Author(s): Anja Schmidt-Christensen, Angelika Sturm, Sebastian Horstmann, Volker Heussler
Software Mentions: 1
Published: over 16 years ago

10.1111/j.1462-5822.2010.01531.x

The E Block motif is associated with<i>Legionella pneumophila</i>translocated substrates
Cited by: 165
Author(s): Lili Huang, Dana Boyd, Whitney Amyot, Andrew D. Hempstead, Zhao‐Qing Luo, Tamara J. O’Connor, Cui Chen, Matthias P. Machner, Timothy P. Montminy, Ralph R. Isberg
Software Mentions: 1
Published: about 14 years ago

10.1111/j.1462-5822.2008.01136.x

Subversion of actin dynamics by EspM effectors of attaching and effacing bacterial pathogens
Cited by: 72
Author(s): Ana Arbeloa, Richard Bulgin, Georgina MacKenzie, Robert K. Shaw, Mark J. Pallen, Valérie F. Crepin, Cédric N. Berger, Gad Frankel
Software Mentions: 1
Published: over 16 years ago

10.1186/s11658-019-0171-z

The effects of CRISPR-Cas9 knockout of the TGF-β1 gene on antler cartilage cells in vitro
Cited by: 9
Author(s): Mingxiao Liu, Xiangyu Han, Hongyun Liu, Danyang Chen, Yue Li, Wei Hu
Software Mentions: 1
Published: over 5 years ago

10.1007/s10561-018-9701-6

Multilineage potential research of Beijing duck amniotic mesenchymal stem cells
Cited by: 4
Author(s): Caiyun Ma, Kunfu Wang, Hongda Ji, Hongliang Wang, Liangcai Guo, Zhiyong Wang, Han Ren, Xishuai Wang, Weijun Guan
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0211989

Nocardia polymerase chain reaction (PCR)-based assay performed on bronchoalveolar lavage fluid after lung transplantation: A prospective pilot study
Cited by: 17
Author(s): Julien Coussement, David Lebeaux, Najla El Bizri, Vincent Claes, Michel Kohnen, Deborah Steensels, Isabelle Étienne, Hélène Salord, Emmanuelle Bergeron, Verónica Rodríguez-Nava
Software Mentions: 1
Published: over 5 years ago

10.1186/s13148-019-0758-2

Histone methyltransferases EHMT1 and EHMT2 (GLP/G9A) maintain PARP inhibitor resistance in high-grade serous ovarian carcinoma
Cited by: 52
Author(s): Zachary L. Watson, Tomomi M. Yamamoto, Alexandra McMellen, Hyunmin Kim, Connor J. Hughes, Lindsay J. Wheeler, Miriam D. Post, Kian Behbakht, Benjamin G. Bitler
Software Mentions: 1
Published: almost 5 years ago

10.1186/s40169-017-0140-y

Survivin a radiogenetic promoter for glioblastoma viral gene therapy independently from CArG motifs
Cited by: 10
Author(s): George E. Naoum, Zeng B. Zhu, Donald J. Buchsbaum, David T. Curiel, Waleed Arafat
Software Mentions: 1
Published: over 7 years ago

10.1038/s42003-020-1004-3

Integrative omics analysis of the termite gut system adaptation to Miscanthus diet identifies lignocellulose degradation enzymes
Cited by: 39
Author(s): Magdalena Całusińska, Martyna Marynowska, Marie Bertucci, Boris Untereiner, Dominika Klimek, Xavier Goux, David Sillam‐Dussès, Piotr Gawron, Rashi Halder, Paul Wilmes, Pau Ferrer, Patrick A. Gerin, Yves Roisin, Philippe Delfosse
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-021-02162-6

A human respiratory tract-associated bacterium with an extremely small genome
Cited by: 2
Author(s): Kazumasa Fukuda, Kei Yamasaki, Yoshitoshi Ogura, Toshinori Kawanami, Hiroaki Ikegami, Shingo Noguchi, Kentaro Akata, Keisuke Katsura, Kazuhiro Yatera, Hiroshi Mukae, Tetsuya Hayashi, Hatsumi Taniguchi
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0143280

Identification of 14-3-3 Family in Common Bean and Their Response to Abiotic Stress
Cited by: 23
Author(s): Ruihua Li, Xiaotong Jiang, Dong Jin, Sangeeta Dhaubhadel, Shaomin Bian, Xuyan Li
Software Mentions: 1
Published: almost 9 years ago

10.3897/CompCytogen.v14i2.49391

Cloning and preliminary verification of telomere-associated sequences in upland cotton
Cited by: 0
Author(s): Yuling Liu, Zhen Liu, Yangyang Wei, Yanjun Wang, Jiaran Shuang, Renhai Peng
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms161226219

The Complete Mitochondrial Genome of Mindarus keteleerifoliae (Insecta: Hemiptera: Aphididae) and Comparison with Other Aphididae Insects
Cited by: 10
Author(s): Yuan Wang, Jing Chen, Li‐Yun Jiang, Ge‐Xia Qiao
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms17060825

Cloning, Expression and 3D Structure Prediction of Chitinase from Chitinolyticbacter meiyuanensis SYBC-H1
Cited by: 9
Author(s): Zhikui Hao, Heng Wu, Meiling Yang, Jianjun Chen, Limin Xi, Weijie Zhao, Jialin Yu, Jiayang Liu, Xiangru Liao, Qingguo Huang
Software Mentions: 1
Published: over 8 years ago

10.1007/s00284-021-02503-y

Consuming Different Structural Parts of Bamboo Induce Gut Microbiome Changes in Captive Giant Pandas
Cited by: 8
Author(s): Zheng Yan, Qin Xu, Walter H. Hsu, Stephan Schmitz Esser, James Ayala, Rong Hou, Ying Yao, Dandan Jiang, Shibin Yuan, Hairui Wang
Software Mentions: 1
Published: over 3 years ago

10.1093/dnares/dsu008

In Silico Identification and Experimental Validation of Insertion-Deletion Polymorphisms in Tomato Genome
Cited by: 43
Author(s): Jingjing Yang, Yuanyuan Wang, Huolin Shen, Wencai Yang
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2018.05.131

A comprehensive annotation for the root-knot nematode Meloidogyne incognita proteome data
Cited by: 4
Author(s): Vishal Singh Somvanshi, Olivia Ghosh, Roli Budhwar, Bhumika Dubay, Rohit Nandan Shukla, Uma Rao
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2015.04.012

Phospho-iTRAQ data article: Assessing isobaric labels for the large-scale study of phosphopeptide stoichiometry
Cited by: 1
Author(s): Pieter Glibert, Paulien Meert, Katleen Van Steendam, Lennart Martens, Dieter Deforce, Maarten Dhaenens
Software Mentions: 1
Published: about 9 years ago

10.1016/j.dib.2020.105898

Draft-genome sequence data and phylogenomic comparison of two marine-sourced bacterial strains Pseudoalteromonas sp. MIP2626 and Psychrobacter sp. BI730
Cited by: 2
Author(s): Caroline Isabel Kothe, Christine Delbarre-Ladrat, Pierre Renault, Delphine Passerini
Software Mentions: 1
Published: over 4 years ago

10.1093/database/bav002

FR database 1.0: a resource focused on fruit development and ripening
Cited by: 6
Author(s): Junyang Yue, Xiaojing Ma, Rongjun Ban, Qianli Huang, Wenjie Wang, Jia Liu, Yongsheng Liu
Software Mentions: 1
Published: over 9 years ago

10.1093/database/bau035

TuberQ: a Mycobacterium tuberculosis protein druggability database
Cited by: 30
Author(s): Leandro Radusky, Lucas A. Defelipe, Esteban Lanzarotti, F. Javier Luque, Xavier Barril, Marcelo Adrian Marti, Adrián Turjanski
Software Mentions: 1
Published: over 10 years ago

10.1093/database/baaa049

RNAWRE: a resource of writers, readers and erasers of RNA modifications
Cited by: 13
Author(s): Fulei Nie, Pengmian Feng, Xiaoming Song, Meng Wu, Qiang Tang, Wei Chen
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0113692

The Odorant Receptor Co-Receptor from the Bed Bug, Cimex lectularius L
Cited by: 19
Author(s): Immo A. Hansen, Stacy D. Rodriguez, Lisa L. Drake, David Price, Brittny N. Blakely, John I. Hammond, Hitoshi Tsujimoto, Erika Y. Monroy, William A. Maio, Alvaro Romero
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0124507

The Development and Evaluation of a Loop-Mediated Isothermal Amplification Method for the Rapid Detection of Salmonella enterica serovar Typhi
Cited by: 30
Author(s): Fenxia Fan, Pengcheng Du, Biao Kan, Mei Yan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0080346

High Endemicity and Low Molecular Diversity of Hepatitis B Virus Infections in Pregnant Women in a Rural District of North Cameroon
Cited by: 48
Author(s): Alexandra Ducancelle, P. Abgueguen, Jacques Birguel, Waël Mansour, Adeline Pivert, Hélène Le Guillou‐Guillemette, Jean-Jacques Sobnangou, Amélie Rameau, Jean‐Marie Huraux, Françoise Lunel‐Fabiani
Software Mentions: 1
Published: about 11 years ago

10.15252/emmm.201606924

Y <scp>RNA</scp> fragment in extracellular vesicles confers cardioprotection via modulation of <scp>IL</scp> ‐10 expression and secretion
Cited by: 157
Author(s): Linda Cambier, Geoffrey de Couto, Ahmed Ibrahim, Antonio Echavez, Jackelyn Valle, Weixin Liu, Michelle Kreke, Rachel Smith, Linda Marbán, Eduardo Marbán
Software Mentions: 1
Published: almost 8 years ago

10.15252/embr.201744102

Evolutionary dynamics of the kinetochore network in eukaryotes as revealed by comparative genomics
Cited by: 190
Author(s): Jolien J. E. van Hooff, Eelco C. Tromer, Leny M. van Wijk, Berend Snel, Geert J. P. L. Kops
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0025702

Mainstreams of Horizontal Gene Exchange in Enterobacteria: Consideration of the Outbreak of Enterohemorrhagic E. coli O104:H4 in Germany in 2011
Cited by: 35
Author(s): Oliver Bezuidt, Rian Pierneef, Kingdom Mncube, Gipsi Lima‐Mendez, Oleg N. Reva
Software Mentions: 1
Published: about 13 years ago

10.1002/ece3.7162

Ancient DNA preserved in small bone fragments from the P.W. Lund collection
Cited by: 9
Author(s): Frederik Valeur Seersholm, Kasper Lykke Hansen, Matthew J. Heydenrych, Anders J. Hansen, Michael Bunce, Morten E. Allentoft
Software Mentions: 1
Published: almost 4 years ago

10.1002/ece3.624

Inferences of evolutionary history of a widely distributed mangrove species,<i>Bruguiera gymnorrhiza</i>, in the Indo-West Pacific region
Cited by: 34
Author(s): Chie Urashi, Kenjiro Teshima, Sumiko Minobe, Osamu Koizumi, Norio Inomata
Software Mentions: 1
Published: over 11 years ago

10.3390/ijms19020443

Indole-3-Acetic Acid Biosynthesis Pathways in the Plant-Beneficial Bacterium Arthrobacter pascens ZZ21
Cited by: 69
Author(s): Mengsha Li, Rui Guo, Fei Yu, Chuncheng Xu, Haiyan Zhao, Huixin Li, Jun Wu
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms19030709

The Complete Plastome Sequence of an Antarctic Bryophyte Sanionia uncinata (Hedw.) Loeske
Cited by: 30
Author(s): Soo‐Jin Park, Hyun Park, Yongrok Choi, Byeong-ha Lee, Jung-Eun Lee
Software Mentions: 1
Published: over 6 years ago

10.1002/ece3.4754

Effects of a presumably protective endosymbiont on life‐history characters and their plasticity for its host aphid on three plants
Cited by: 10
Author(s): Shirong Liu, Deguang Liu, Rongfang Zhang, Yingting Zhai, Xianliang Huang, Da Wang, Xiaoqin Shi
Software Mentions: 1
Published: almost 6 years ago

10.1080/22221751.2020.1727299

HIV-1 did not contribute to the 2019-nCoV genome
Cited by: 38
Author(s): Chuan Xiao, Xiaojun Li, Shuying Liu, Yongming Sang, Shuang Gao, Feng Gao
Software Mentions: 1
Published: almost 5 years ago

10.1002/elsc.202000038

A novel LysR‐type regulator negatively affects biosynthesis of the immunosuppressant brasilicardin
Cited by: 3
Author(s): Marcin Wolański, Michał Krawiec, Paul N. Schwarz, Evi Stegmann, Wolfgang Wohlleben, Anina Buchmann, Harald Gross, Michael Eitel, Pierre Koch, Alma Botas, Cármen Méndez, Luz Elena Núñez, Francisco Morís, Jesús M. Cortés, Jolanta Zakrzewska‐Czerwińska
Software Mentions: 1
Published: about 4 years ago

10.1111/j.1462-2920.2008.01861.x

High abundance of virulence gene homologues in marine bacteria
Cited by: 88
Author(s): Olof P. Persson, Jarone Pinhassi, Lasse Riemann, Britt-Inger Marklund, Mikael Rhen, Staffan Normark, José M. González, Åke Hagström
Software Mentions: 1
Published: over 15 years ago

10.3390/ijms19040929

The Complete Chloroplast Genome Sequence of Tree of Heaven (Ailanthus altissima (Mill.) (Sapindales: Simaroubaceae), an Important Pantropical Tree
Cited by: 59
Author(s): Josphat K. Saina, Zhizhong Li, Andrew W. Gichira, Yi-Ying Liao
Software Mentions: 1
Published: over 6 years ago

10.1111/j.1462-2920.2009.01900.x

Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
Cited by: 426
Author(s): Mirjana Rajilić‐Stojanović, Hans G.H.J. Heilig, Douwe Molenaar, Kajsa Kajander, Anu Surakka, Hauke Smidt, Willem M. de Vos
Software Mentions: 1
Published: over 15 years ago

10.1111/j.1462-2920.2012.02746.x

Ciliate and bacterial communities associated with White Syndrome and Brown Band Disease in reef‐building corals
Cited by: 88
Author(s): Michael Sweet, John C. Bythell
Software Mentions: 1
Published: over 12 years ago

10.1111/j.1462-2920.2008.01760.x

Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur‐oxidizing prokaryotes
Cited by: 135
Author(s): Alexander Loy, Stephan Duller, Christian Baranyi, Marc Mußmann, Jörg Ott, Itai Sharon, Oded Béjà, Denis Le Paslier, Christiane Dahl, Michael Wagner
Software Mentions: 1
Published: almost 16 years ago

10.3390/ijms19092518

Biochemical Characterization and Structural Modeling of Fused Glucose-6-Phosphate Dehydrogenase-Phosphogluconolactonase from Giardia lamblia
Cited by: 10
Author(s): Laura Morales-Luna, Hugo Serrano‐Posada, Abigail González‐Valdez, Daniel Ortega-Cuéllar, América Vanoye-Carlo, Beatriz Hernández-Ochoa, Edgar Sierra-Palacios, Yadira Rufino-González, Rosa Angélica Castillo-Rodríguez, Verónica Pérez de la Cruz, Liliana M. Moreno‐Vargas, Diego Prada‐Gracia, Jaime Marcial-Quino, Saúl Gómez-Manzo
Software Mentions: 1
Published: about 6 years ago

10.1111/j.1462-2920.2008.01650.x

The exopolysaccharide of<i>Rhizobium</i>sp. YAS34 is not necessary for biofilm formation on<i>Arabidopsis thaliana</i>and<i>Brassica napus</i>roots but contributes to root colonization
Cited by: 87
Author(s): Catherine Santaella, Mathieu Schué, Odile Berge, Thierry Heulin, Wafa Achouak
Software Mentions: 1
Published: over 16 years ago

10.1111/j.1462-2920.2012.02774.x

The metagenome of the marine anammox bacterium ‘<i>Candidatus</i> Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
Cited by: 222
Author(s): Jack van de Vossenberg, Dagmar Woebken, Wouter J. Maalcke, Hans Wessels, Bas E. Dutilh, Boran Kartal, Eva M. Janssen-Megens, Guus Roeselers, Jia Yan, Daan R. Speth, Jolein Gloerich, Wim Geerts, Erwin van der Biezen, Wendy Pluk, Kees−Jan Françoijs, Lina Russ, Phyllis Lam, Stephanie Malfatti, Susannah G. Tringe, Suzanne Caroline Marianne Haaijer, Huub J. M. Op den Camp, Henk Stunnenberg, Rudolf Amann, Marcel M. M. Kuypers, Mike S. M. Jetten
Software Mentions: 1
Published: over 12 years ago

10.1111/1462-2920.14056

Distribution of thermophilic endospores in a temperate estuary indicate that dispersal history structures sediment microbial communities
Cited by: 19
Author(s): Emma Bell, Lynsay I. Blake, Angela Sherry, Ian M. Head, Claude Hubert
Software Mentions: 1
Published: over 6 years ago