Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: biotools

https://packages.ecosyste.ms/registries/pypi.org/packages/biotools

A bunch of bioinformatics utilities.
45 versions
Latest release: about 11 years ago
247 downloads last month

Papers Mentioning biotools 21

Registered Report Protocol: Survey on attitudes and experiences regarding preregistration in psychological research
Cited by: 2
Author(s): Lisa Spitzer, Stefanie Mueller
Software Mentions: 21
Published: over 3 years ago

10.3389/fpls.2021.651936

Unraveling the Relationship Between Seed Yield and Yield-Related Traits in a Diversity Panel of Brassica juncea Using Multi-Traits Mixed Model
Cited by: 13
Author(s): Ranjit Saroj, S. L. Soumya, S. P. Singh, Surya Sankar, Rajat Chaudhary, . Yashpal, Neeru Saini, Sujata Vasudev, Devendra K. Yadava
Software Mentions: 12
Published: over 3 years ago

10.1007/s10270-019-00721-4

Modeling compliance specifications in linear temporal logic, event processing language and property specification patterns: a controlled experiment on understandability
Cited by: 2
Author(s): Christoph Czepa, Amirali Amiri, Evangelos Ntentos, Uwe Zdun
Software Mentions: 9
Published: almost 6 years ago

10.3758/s13420-016-0255-9

Effects of forced movements on learning: Findings from a choice reaction time task in rats
Cited by: 3
Author(s): Hidekazu Kaneko, Hiroto Sano, Yasuhisa Hasegawa, Hiroshi Tamura, Shinya Suzuki
Software Mentions: 8
Published: almost 8 years ago

10.1093/gigascience/giaa157

biotoolsSchema: a formalized schema for bioinformatics software description
Cited by: 7
Author(s): Jon C. Ison, Hans Ienasescu, Emil Karol Rydza, Piotr Jaroslaw Chmura, Kristoffer Rapacki, Alban Gaignard, Veit Schwämmle, Jacques van Helden, Matúš Kalaš, Hervé Ménager
Software Mentions: 7
Published: almost 4 years ago

10.7717/peerj.2740

Harvest year effects on Apulian EVOOs evaluated by1H NMR based metabolomics
Cited by: 18
Author(s): Chiara Roberta Girelli, Laura Del Coco, Paride Papadia, Sandra Angelica De Pascali, Francesco Paolo Fanizzi
Software Mentions: 6
Published: about 8 years ago

10.1093/gigascience/giab057

VC@Scale: Scalable and high-performance variant calling on cluster environments
Cited by: 3
Author(s): Tanveer Ahmad, Zaid Al-Ars, Peter Hofstee
Software Mentions: 5
Published: over 3 years ago

10.1111/eva.12499

Strong population structure deduced from genetics, otolith chemistry and parasite abundances explains vulnerability to localized fishery collapse in a large Sciaenid fish,Protonibea diacanthus
Cited by: 31
Author(s): Laura Taillebois, Diane P. Barton, David A. Crook, Thor Saunders, Jonathan Taylor, Mark Hearnden, Richard Saunders, Stephen J. Newman, Michael J. Travers, David J. Welch, Alan Greig, Christine L. Dudgeon, Safia Maher, Jennifer R. Ovenden
Software Mentions: 5
Published: over 7 years ago

10.1186/s13002-017-0192-5

Functional diversity of home gardens and their agrobiodiversity conservation benefits in Benin, West Africa
Cited by: 32
Author(s): Rodrigue Castro Gbèdomon, Kolawolé Valère Salako, Adandé Belarmain Fandohan, Rodrigue Idohou, Romain Glèlè Kakaї, Achille Ephrem Assogbadjo
Software Mentions: 4
Published: about 7 years ago

10.1093/gigascience/giab018

Rapid development of cloud-native intelligent data pipelines for scientific data streams using the HASTE Toolkit
Cited by: 2
Author(s): Ben Blamey, Salman Toor, Martin Dahlö, Håkan Wieslander, Philip J. Harrison, Ida‐Maria Sintorn, Alan Sabirsh, Carolina Wählby, Ola Spjuth, Andreas Hellander
Software Mentions: 4
Published: almost 4 years ago

10.1002/ece3.2748

A parasite's modification of host behavior reduces predation on its host
Cited by: 17
Author(s): John Soghigian, Linda R. Valsdottir, Todd P. Livdahl
Software Mentions: 4
Published: almost 8 years ago

10.1093/gigascience/giaa003

HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes
Cited by: 5
Author(s): Jerven Bolleman, Edouard de Castro, Delphine Baratin, Sébastien Géhant, Beatrice A Cuche, Andrea H. Auchincloss, Elisabeth Coudert, Chantal Hulo, Patrick Masson, Ivo Pedruzzi, Catherine Rivoire, Ioannis Xénarios, Nicole Redaschi, Alan Bridge
Software Mentions: 3
Published: almost 5 years ago

10.1080/03949370.2017.1343868

An Alpine ant’s behavioural polymorphism: monogyny with and without internest aggression in Tetramorium alpestre
Cited by: 8
Author(s): Patrick Krapf, Lucia Russo, Wolfgang Arthofer, Markus Möst, Florian M. Steiner, Birgit C. Schlick-Steiner
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0108009

Genome-Based Comparative Analyses of Antarctic and Temperate Species of Paenibacillus
Cited by: 30
Author(s): Melissa Dsouza, Michael W. Taylor, Susan Turner, Jackie Aislabie
Software Mentions: 3
Published: about 10 years ago

10.1093/gigascience/giaa095

An extensible big data software architecture managing a research resource of real-world clinical radiology data linked to other health data from the whole Scottish population
Cited by: 12
Author(s): Thomas Nind, James M. Sutherland, Gordon McAllister, Douglas R. Hardy, Alastair Hume, Ruairidh MacLeod, Jacqueline Caldwell, Susan Krueger, Leandro Tramma, Ross Teviotdale, Mohammed Abdelatif, Kenny Gillen, J. W. D. Ward, Donald Scobbie, Ian Baillie, Andrew Brooks, Bianca Prodan, William Kerr, Dominic Sloan-Murphy, Juan F R Herrera, Dan C. McManus, Carole Morris, Carol Sinclair, Rob Baxter, Mark Parsons, Andrew D. Morris, Emily Jefferson
Software Mentions: 3
Published: about 4 years ago

10.1093/gigascience/gix022

ReGaTE: Registration of Galaxy Tools in Elixir
Cited by: 13
Author(s): Olivia Doppelt-Azeroual, Fabien Mareuil, Éric Deveaud, Matúš Kalaš, Nicola Soranzo, Marius van den Beek, Björn Grüning, Jon C. Ison, Hervé Ménager
Software Mentions: 2
Published: over 7 years ago

10.1016/j.dib.2014.09.004

Data in support of metabolic reprogramming in transformed mouse cortical astrocytes: A proteomic study
Cited by: 0
Author(s): Azéddine Bentaib, Pascal De Tullio, Hervé Chneiweiss, Emmanuel Hermans, Marie‐Pierre Junier, Pierre Leprince
Software Mentions: 2
Published: almost 10 years ago

10.1002/2211-5463.12650

Usnic acid modifies <scp>MRSA</scp> drug resistance through down‐regulation of proteins involved in peptidoglycan and fatty acid biosynthesis
Cited by: 9
Author(s): Sneha Sinha, Vivek Kumar Gupta, Parmanand Kumar, Rajiv Kumar, Robin Joshi, Anirban Pal, Mahendra P. Darokar
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2017.01653

Rab3a-Bound CD63 Is Degraded and Rab3a-Free CD63 Is Incorporated into HIV-1 Particles
Cited by: 4
Author(s): Yasuo Kubo, Hiroshi Masumoto, Mai Izumida, Katsura Kakoki, Hideki Hayashi, Tomohiro Matsuyama
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0156440

Social Structure and Genetic Distance Mediate Nestmate Recognition and Aggressiveness in the Facultative Polygynous Ant Pheidole pallidula
Cited by: 13
Author(s): Denis Fournier, Jean‐Christophe de Biseau, Sophie De Laet, Alain Lenoir, Luc Passera, Serge Aron
Software Mentions: 2
Published: over 8 years ago

10.1093/gigascience/giz153

Prognostic model for multiple myeloma progression integrating gene expression and clinical features
Cited by: 9
Author(s): Chen Sun, Hongyang Li, Ryan E. Mills, Yuanfang Guan
Software Mentions: 2
Published: about 5 years ago