Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: biopython
https://packages.ecosyste.ms/registries/pypi.org/packages/biopython
Freely available tools for computational molecular biology.
58 versions
Latest release: almost 2 years ago
575 dependent packages
855,332 downloads last month
Papers Mentioning biopython 114
10.1016/j.cell.2015.08.057
Unmasking Determinants of Specificity in the Human KinomeCited by: 83
Author(s): Pau Creixell, Antonio Palmeri, Chad J. Miller, Hua Lou, Cristina Costa Santini, Morten Nielsen, Benjamin E. Turk, Rune Linding
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pbio.3001030
A sensitive and affordable multiplex RT-qPCR assay for SARS-CoV-2 detectionCited by: 27
Author(s): Martin A.M. Reijns, Louise Thompson, Juan Carlos Acosta, Holly A. Black, Francisco J. Sánchez‐Luque, Austin G. Diamond, David Parry, Alison Daniels, Marie O’Shea, Carolina Uggenti, Maria C. Sanchez, Alan O’Callaghan, Michelle L.L. McNab, Martyna Adamowicz, Elias T Friman, Toby W. Hurd, Edward J. Jarman, Frederic Li Mow Chee, Jacqueline K. Rainger, Marion Walker, Camilla Drake, Dáša Longman, Christine Mordstein, Sophie J. Warlow, Sonia McKay, Louise Slater, M Azim Ansari, Ian Tomlinson, D. J. Moore, Nadine Wilkinson, Jill Shepherd, Kate Templeton, Ingólfur Johannessen, Christine Tait-Burkard, Jürgen Haas, Nick Gilbert, Ian R. Adams, Andrew P. Jackson
Software Mentions: 1
Published: almost 4 years ago
10.7717/peerj.3948
BGDMdocker: a Docker workflow for data mining and visualization of bacterial pan-genomes and biosynthetic gene clustersCited by: 5
Author(s): Gong Chen, Quan Lü, Ling Ma, Guocai Zhang, Liang Xu, Zhongshi Zhou
Software Mentions: 1
Published: almost 7 years ago
10.1128/mSphere.01090-20
APEX2 Proximity Proteomics Resolves Flagellum Subdomains and Identifies Flagellum Tip-Specific Proteins in Trypanosoma bruceiCited by: 15
Author(s): Daniel E. Vélez‐Ramírez, Michelle M. Shimogawa, Sunayan S. Ray, Anthony Lopez, Shima Rayatpisheh, Gerasimos Langousis, Marcus Gallagher-Jones, Samuel Dean, James A. Wohlschlegel, Kent L. Hill
Software Mentions: 1
Published: over 3 years ago
10.1186/2041-2223-3-19
High throughput DNA sequencing to detect differences in the subgingival plaque microbiome in elderly subjects with and without dementiaCited by: 33
Author(s): Andrew Cockburn, Jonathan M Dehlin, Tiffany Ngan, Richard J. Crout, Goran Bošković, James Denvir, Donald A. Primerano, Brenda L. Plassman, Bei Wu, Christopher F. Cuff
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0043847
FunSAV: Predicting the Functional Effect of Single Amino Acid Variants Using a Two-Stage Random Forest ModelCited by: 41
Author(s): Mingjun Wang, Xing‐Ming Zhao, Kazuhiro Takemoto, Hu Xu, Yuan Li, Tatsuya Akutsu, Jiangning Song
Software Mentions: 1
Published: about 12 years ago
10.1093/gigascience/giz109
Bionitio: demonstrating and facilitating best practices for bioinformatics command-line softwareCited by: 12
Author(s): Peter Georgeson, Anna Syme, Clare Sloggett, Jessica Chung, Harriet Dashnow, Michael Milton, Andrew Lonsdale, David Powell, Torsten Seemann, Bernard J. Pope
Software Mentions: 1
Published: about 5 years ago
10.18632/oncotarget.22363
About miRNAs, miRNA seeds, target genes and target pathwaysCited by: 85
Author(s): Tim Kehl, Christina Backes, Fabian Kern, Tobias Fehlmann, Nicole Ludwig, Eckart Meese, Hans‐Peter Lenhof, Andreas Keller
Software Mentions: 1
Published: about 7 years ago
10.1186/gb-2008-9-2-r42
Visualization of pseudogenes in intracellular bacteria reveals the different tracks to gene destructionCited by: 35
Author(s): Hans Henrik Fuxelius, Alistair C. Darby, Nam Huyk Cho, Siv G. E. Andersson
Software Mentions: 1
Published: almost 17 years ago
10.1073/pnas.1903982116
Pulcherrimin formation controls growth arrest of the <i>Bacillus subtilis</i> biofilmCited by: 40
Author(s): Sofia Arnaouteli, D. A. Matoz-Fernandez, Michael Porter, Margarita Kalamara, James Abbott, Cait E. MacPhee, Fordyce A. Davidson, Nicola R. Stanley‐Wall
Software Mentions: 1
Published: over 5 years ago
10.3390/microorganisms8111755
Limited Genetic Diversity of blaCMY-2-Containing IncI1-pST12 Plasmids from Enterobacteriaceae of Human and Broiler Chicken Origin in The NetherlandsCited by: 1
Author(s): Evert den Drijver, Joep Stohr, Jaco J. Verweij, Carlo Verhulst, Francisca C. Velkers, Arjan Stegeman, Marjolein Kluytmans-van den Bergh, Jan Kluytmans
Software Mentions: 1
Published: about 4 years ago
10.1534/g3.112.003392
Targeted Capture of Homoeologous Coding and Noncoding Sequence in Polyploid CottonCited by: 26
Author(s): Armel Salmon, Joshua A. Udall, Jeffrey A. Jeddeloh, Jonathan F. Wendel
Software Mentions: 1
Published: over 12 years ago
10.3390/ijerph16060912
Identification of Pathogenic Bacteria from Public Libraries via Proteomics AnalysisCited by: 8
Author(s): Ryan Hyunjae Jung, Minzae Kim, Bhoomi Bhatt, Jong Min Choi, Jung Hyeob Roh
Software Mentions: 1
Published: over 5 years ago
10.12688/f1000research.2-134.v2
FAM129B is a novel regulator of Wnt/β-catenin signal transduction in melanoma cellsCited by: 22
Author(s): Willliam Conrad, Michael B. Major, Michele A. Cleary, Marc Ferrer, Brian S. Roberts, Shane Marine, Namjin Chung, William T. Arthur, Randall T. Moon, Jason D. Berndt, Andy J. Chien
Software Mentions: 1
Published: about 11 years ago