pypi: ape | Projects | Ecosyste.ms: Papers

10.1038/s41598-019-46869-3

Gains and losses of metabolic function inferred from a phylotranscriptomic analysis of algae
Cited by: 5
Author(s): Falicia Goh, Justin Jeyakani, Phornpimon Tipthara, Amaury Cazenave-Gassiot, Rajoshi Ghosh, Nicholas Bogard, Zhenxuan Yeo, Gane Ka‐Shu Wong, Michael Melkonian, Markus R. Wenk, Neil D. Clarke
Software Mentions: 3
Published: over 5 years ago

10.7717/peerj.4520

Large-scale assessment of commensalistic–mutualistic associations between African birds and herbivorous mammals using internet photos
Cited by: 17
Author(s): Peter Mikula, Jiří Hadrava, Tomáš Albrecht, Piotr Tryjanowski
Software Mentions: 3
Published: over 6 years ago

10.7717/peerj.6703

Spiders did not repeatedly gain, but repeatedly lost, foraging webs
Cited by: 32
Author(s): Jonathan A. Coddington, Ingi Agnarsson, Chris A. Hamilton, Jason E. Bond
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-47954-3

Widespread Wolbachia infection in an insular radiation of damselflies (Odonata, Coenagrionidae)
Cited by: 15
Author(s): M. Olalla Lorenzo-Carballa, Yusdiel Torres‐Cambas, K. Heaton, Gregory D. D. Hurst, Sylvain Charlat, Thomas N. Sherratt, Hans Van Gossum, Adolfo Cordero‐Rivera, Christopher D. Beatty
Software Mentions: 3
Published: over 5 years ago

10.1038/s41598-019-51511-3

Thiotrophic bacterial symbiont induces polyphenism in giant ciliate host Zoothamnium niveum
Cited by: 7
Author(s): Monika Bright, Salvador Espada‐Hinojosa, Jean-Marie Volland, Judith Drexel, Julia Kesting, I. Kolar, Denny Morchner, Andrea D. Nussbaumer, Jörg Ott, Florian Scharhauser, Lukas Schuster, Helena Constance Zambalos, H. L. Nemeschkal
Software Mentions: 3
Published: about 5 years ago

10.1186/s13071-017-1982-2

The modern morphometric approach to identify eggs of Triatominae
Cited by: 26
Author(s): Soledad Santillán-Guayasamín, Anita G. Villacís, Mario J. Grijalva, Jean‐Pierre Dujardin
Software Mentions: 3
Published: almost 8 years ago

10.1186/s13071-021-04631-7

New genotype invasion of dengue virus serotype 1 drove massive outbreak in Guangzhou, China
Cited by: 6
Author(s): Mengmeng Ma, Sean L. Wu, Zhenjian He, Lihong Yuan, Zhenzhong Bai, Liyun Jiang, John M. Marshall, Jiahai Lu, Zhicong Yang, Qinlong Jing
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-019-54573-5

Universality of indeterminate growth in lizards rejected: the micro-CT reveals contrasting timing of growth cartilage persistence in iguanas, agamas, and chameleons
Cited by: 8
Author(s): Petra Frýdlová, Jana Mrzílková, Martin Šeremeta, Jan Křemen, Jan Dudák, J. Žemlička, Pavel Němec, Petr Velenský, Jiří Moravec, Daniel Koleška, Veronika Zahradníčková, Tomáš Jirásek, Petr Kodym, Daniel Frynta, Petr Zach
Software Mentions: 3
Published: almost 5 years ago

10.3897/zookeys.775.22553

Description of Triatoma mopan sp. n. from a cave in Belize (Hemiptera, Reduviidae, Triatominae)
Cited by: 60
Author(s): Patricia L. Dorn, Silvia Andrade Justi, Carolina Dale, Lori Stevens, Cléber Galvão, Raquel Asunción Lima-Cordón, Carlota Monroy
Software Mentions: 3
Published: over 6 years ago

10.1128/AEM.00808-18

Shuffling the Neutral Drift of Unspecific Peroxygenase in Saccharomyces cerevisiae
Cited by: 24
Author(s): Javier Martín-Díaz, Carmen Paret, Eva García-Ruiz, Patricia Molina‐Espeja, Miguel Alcalde
Software Mentions: 3
Published: over 6 years ago

10.3390/v12020182

In Search of Covariates of HIV-1 Subtype B Spread in the United States—A Cautionary Tale of Large-Scale Bayesian Phylogeography
Cited by: 13
Author(s): Samuel L. Hong, Simon Dellicour, Bram Vrancken, Marc A. Suchard, Michael T. Pyne, David R. Hillyard, Philippe Lemey, Guy Baele
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-62639-y

High variability of Blue Carbon storage in seagrass meadows at the estuary scale
Cited by: 55
Author(s): Aurora M. Ricart, Paul H. York, Catherine Bryant, Michael A. Rasheed, Daniel Ierodiaconou, Peter I. Macreadie
Software Mentions: 3
Published: over 4 years ago

10.1186/s12862-014-0269-x

Phenotype and animal domestication: A study of dental variation between domestic, wild, captive, hybrid and insular Sus scrofa
Cited by: 60
Author(s): Allowen Evin, Keith Dobney, Renate Schafberg, Joseph Owen, Una Strand Viðarsdóttir, Greger Larson, Thomas Cucchi
Software Mentions: 3
Published: almost 10 years ago

10.1038/s41598-020-71473-1

Nucleotide substitution rates of diatom plastid encoded protein genes are positively correlated with genome architecture
Cited by: 7
Author(s): Yan Ren, Mengjie Yu, Wai Yee Low, Tracey A. Ruhlman, Nahid H. Hajrah, Abdelfatteh El Omri, Mohammad K. Alghamdi, Mumdooh J. Sabir, Alawiah M. Alhebshi, Majid Rasool Kamli, Jamal S. M. Sabir, Edward C. Theriot, Robert K. Jansen, Irfan A. Rather
Software Mentions: 3
Published: about 4 years ago

10.1093/ve/veaa075

Evaluation of NGS-based approaches for SARS-CoV-2 whole genome characterisation
Cited by: 108
Author(s): Christophe Ginevra, Christophe Ginevra, Marina Sabatier, Hadrien Regue, Grégory Destras, Solenne Brun, Gwendolyne Burfin, Caroline Scholtès, Florence Morfin, Martine Valette, Bruno Lina, Antonin Bal, Laurence Josset
Software Mentions: 3
Published: over 4 years ago

10.1093/ve/vew017

Islands of linkage in an ocean of pervasive recombination reveals two-speed evolution of human cytomegalovirus genomes
Cited by: 69
Author(s): Florent Lassalle, Daniel P. Depledge, Matthew B. Reeves, Alexander Brown, Mads Brøkner Christiansen, Helena J. Tutill, Rachel Williams, Katja Einer-Jensen, Jolyon Holdstock, Claire Atkinson, Julianne R. Brown, Freek B. van Loenen, Duncan A. Clark, Paul Griffiths, Georges M. G. M. Verjans, Martin Schutten, Richard S. B. Milne, François Balloux, Judith Breuer
Software Mentions: 3
Published: almost 9 years ago

10.1007/s00442-021-05014-6

Energy expenses on prey processing are comparable, but paid at a higher metabolic scope and for a longer time in ambush vs active predators: a multispecies study on snakes
Cited by: 2
Author(s): Stanisław Bury
Software Mentions: 3
Published: over 3 years ago

10.14202/vetworld.2019.909-915

Prevalence and molecular characterization of infectious bronchitis virus isolated from chicken in Bangladesh
Cited by: 9
Author(s): Zafar Ahmed Bhuiyan, Zulfekar Ali, Mohammad Moktader Moula, M Giasuddin, Zahed Uddin Mahmood Khan
Software Mentions: 3
Published: over 5 years ago

10.1186/1471-2148-7-156

New analysis for consistency among markers in the study of genetic diversity: development and application to the description of bacterial diversity
Cited by: 12
Author(s): Sandrine Pavoine, Xavier Bailly
Software Mentions: 3
Published: almost 18 years ago

10.3897/mycokeys.36.22548

Different diversification histories in tropical and temperate lineages in the ascomycete subfamily Protoparmelioideae (Parmeliaceae)
Cited by: 7
Author(s): Garima Singh, Francesco Dal Grande, Jan Schnitzler, Markus Pfenninger, Imke Schmitt
Software Mentions: 3
Published: over 6 years ago

10.1002/mds.27105

The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder
Cited by: 384
Author(s): Anna Heintz‐Buschart, Urvashi Pandey, Tamara Wicke, Friederike Sixel‐Döring, Annette Janzen, Elisabeth Sittig-Wiegand, Claudia Trenkwalder, Wolfgang H. Oertel, Brit Mollenhauer, Paul Wilmes
Software Mentions: 3
Published: about 7 years ago

10.1093/molbev/msz263

Optimizing Phylogenomics with Rapidly Evolving Long Exons: Comparison with Anchored Hybrid Enrichment and Ultraconserved Elements
Cited by: 34
Author(s): Benjamin R. Karin, Tony Gamble, Todd R. Jackman
Software Mentions: 3
Published: about 5 years ago

10.1093/molbev/msz074

Evidence for Faster X Chromosome Evolution in Spiders
Cited by: 23
Author(s): Jesper Bechsgaard, Mads Fristrup Schou, Bram Vanthournout, Frederik Hendrickx, Bjarne Knudsen, Virginia Settepani, Mikkel Heide Schierup, Trine Bilde
Software Mentions: 3
Published: over 5 years ago

10.3390/microorganisms9020299

What Is the Best Lens? Comparing the Resolution Power of Genome-Derived Markers and Standard Barcodes
Cited by: 4
Author(s): Angela Conti, Laura Della Corte, Debora Casagrande Pierantoni, Vincent Robert, Gianluigi Cardinali
Software Mentions: 3
Published: almost 4 years ago

10.1099/mgen.0.000116

SNVPhyl: a single nucleotide variant phylogenomics pipeline for microbial genomic epidemiology
Cited by: 86
Author(s): A. Petkau, Philip Mabon, Cameron Sieffert, Natalie Knox, Jennifer Cabral, Mariam Iskander, Mark Iskander, Kelly Weedmark, Rahat Zaheer, Lee S. Katz, Céline Nadon, Aleisha Reimer, Eduardo N. Taboada, Robert G. Beiko, William W. L. Hsiao, Fiona S. L. Brinkman, Morag Graham, Gary Van Domselaar
Software Mentions: 3
Published: over 7 years ago

10.7554/eLife.44471

Multiple pairs of allelic MLA immune receptor-powdery mildew AVRA effectors argue for a direct recognition mechanism
Cited by: 87
Author(s): Isabel M. L. Saur, Saskia Bauer, Barbara Kracher, Xunli Lu, Lamprinos Franzeskakis, Marion Müller, Björn Sabelleck, Florian Kümmel, Ralph Panstruga, Takaki Maekawa, Paul Schulze‐Lefert
Software Mentions: 3
Published: almost 6 years ago

10.1099/mgen.0.000388

Mycobacterium bovis genomics reveals transmission of infection between cattle and deer in Ireland
Cited by: 25
Author(s): Joseph Crispell, Sophie Cassidy, Kevin Kenny, Guy McGrath, Susan Warde, H. S. Cameron, Gianluigi Rossi, Teresa MacWhite, Piran White, Samantha Lycett, Rowland R. Kao, John Moriarty, Stephen V. Gordon
Software Mentions: 3
Published: over 4 years ago

10.1007/s00335-020-09831-7

Comparative genomic analysis of inbred rat strains reveals the existence of ancestral polymorphisms
Cited by: 0
Author(s): Hyeonjeong Kim, Minako Yoshihara, Mikita Suyama
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-021-97689-3

Development and validation of diagnostic SNP markers for quality control genotyping in a collection of four rice (Oryza) species
Cited by: 4
Author(s): Arnaud Comlan Gouda, Marilyn L. Warburton, Gustave Djèdatin, Sèdjro Bienvenu Kpeki, Peterson W. Wambugu, Karlin Gnikoua, Marie Noëlle Ndjiondjop
Software Mentions: 3
Published: about 3 years ago

10.1098/rsbl.2015.0992

Patterns of philopatry and longevity contribute to the evolution of post-reproductive lifespan in mammals
Cited by: 14
Author(s): Hazel J. Nichols, Lilith J. Zecherle, Kevin Arbuckle
Software Mentions: 3
Published: almost 9 years ago

10.1186/s13062-020-00284-1

Unraveling city-specific signature and identifying sample origin locations for the data from CAMDA MetaSUB challenge
Cited by: 11
Author(s): Runzhi Zhang, Alejandro R. Walker, Susmita Datta
Software Mentions: 3
Published: almost 4 years ago

10.1093/sysbio/syv084

The Phylogeny ofRickettsiaUsing Different Evolutionary Signatures: How Tree-Like is Bacterial Evolution?
Cited by: 63
Author(s): Gemma G. R. Murray, Lucy A. Weinert, Emma Rhule, John J. Welch
Software Mentions: 3
Published: about 9 years ago

10.1093/beheco/arz198

Towards a comparative approach to the structure of animal personality variation
Cited by: 19
Author(s): Stephen John White, David Pascall, Alastair J. Wilson
Software Mentions: 3
Published: almost 5 years ago

10.3390/toxins11120711

Coevolution of Snake Venom Toxic Activities and Diet: Evidence that Ecological Generalism Favours Toxicological Diversity
Cited by: 39
Author(s): Emma-Louise Davies, Kevin Arbuckle
Software Mentions: 3
Published: almost 5 years ago

10.1101/2020.09.21.300913

Rapid detection of inter-clade recombination in SARS-CoV-2 with Bolotie
Cited by: 14
Author(s): Ales Varabyou, Christopher Pockrandt, Steven L. Salzberg, Mihaela Pertea
Software Mentions: 3
Published: about 4 years ago

10.1186/1471-2164-11-379

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence
Cited by: 171
Author(s): Benoît Remenant, Bénédicte Coupat-Goutaland, Alice Guidot, Gilles Cellier, Emmanuel Wicker, Caitilyn Allen, Mark Fegan, Olivier Pruvost, Meyer Elbaz, Alexandra Calteau, Grégory Salvignol, Damien Mornico, Sophie Mangenot, Valérie Barbe, Claudine Médigue, Philippe Prior
Software Mentions: 3
Published: over 14 years ago

10.3389/fmicb.2021.689987

Diversity and Eco-Evolutionary Associations of Endosymbiotic Astome Ciliates With Their Lumbricid Earthworm Hosts
Cited by: 9
Author(s): Tomáš Obert, Ivan Rurik, Peter Vďačný
Software Mentions: 3
Published: over 3 years ago

10.3389/fmicb.2017.01595

The Geographic Distribution of Saccharomyces cerevisiae Isolates within three Italian Neighboring Winemaking Regions Reveals Strong Differences in Yeast Abundance, Genetic Diversity and Industrial Strain Dissemination
Cited by: 24
Author(s): Alessia Viel, Jean Luc Legras, Chiara Nadai, Milena Carlot, Angiolella Lombardi, Manna Crespan, Daniele Migliaro, Alessio Giacomini
Software Mentions: 3
Published: about 7 years ago

10.1186/1471-2164-14-484

Design and validation of a supragenome array for determination of the genomic content of Haemophilus influenzae isolates
Cited by: 15
Author(s): Rory Eutsey, N. Luisa Hiller, Joshua P. Earl, Benjamin Janto, Margaret E. Dahlgren, Azad Ahmed, Evan Powell, Matthew Schultz, Janet R. Gilsdorf, Lixin Zhang, Arnold L. Smith, Timothy F. Murphy, Sanjay Sethi, Kai Shen, J. Christopher Post, Fang Hu, Garth D. Ehrlich
Software Mentions: 3
Published: over 11 years ago

10.3389/fmicb.2018.01847

Fungi Indirectly Affect Plant Root Architecture by Modulating Soil Volatile Organic Compounds
Cited by: 36
Author(s): Denis Schenkel, Jose G. Maciá‐Vicente, Alexander Bissell, Richard Splivallo
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2015.00938

The large-scale distribution of ammonia oxidizers in paddy soils is driven by soil pH, geographic distance, and climatic factors
Cited by: 47
Author(s): Hang‐Wei Hu, Limei Zhang, Chaolei Yuan, Yong Zheng, Juntao Wang, Deli Chen
Software Mentions: 3
Published: about 9 years ago

10.3389/fmicb.2020.600516

Comparing the Bacterial Community in the Gastrointestinal Tracts Between Growth-Retarded and Normal Yaks on the Qinghai–Tibetan Plateau
Cited by: 21
Author(s): Jian Ma, Yixiao Zhu, Zhisheng Wang, Yan Xiong, Rui Hu, Xueying Wang, Guang Cao, Huawei Zou, Ali Mujtaba Shah, Quanhui Peng, Bai Xue, Lizhi Wang, Suonan Zhao, Xiangying Kong
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2019.01573

Microbial Communities of Polymetallic Deposits’ Acidic Ecosystems of Continental Climatic Zone With High Temperature Contrasts
Cited by: 24
Author(s): С. Н. Гаврилов, Aleksei A. Korzhenkov, Ilya V. Kublanov, Rafael Bargiela, Л. В. Замана, Alexandra A. Popova, Stepan V. Toshchakov, Peter N. Golyshin, Olga V. Golyshina
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2019.02956

Bacterial Tradeoffs in Growth Rate and Extracellular Enzymes
Cited by: 65
Author(s): Kelly Irene Ramin, Steven D. Allison
Software Mentions: 3
Published: almost 5 years ago

10.3389/fmicb.2018.03282

High-Throughput Sequence Analyses of Bacterial Communities and Multi-Mycotoxin Profiling During Processing of Different Formulations of Kunu, a Traditional Fermented Beverage
Cited by: 38
Author(s): Chibundu N. Ezekiel, Kolawole I. Ayeni, Obinna T. Ezeokoli, Michael Sulyok, Deidre Alima Bregene van Wyk, Oluwawapelumi A. Oyedele, Muiz O. Akinyemi, Ihuoma E. Chibuzor-Onyema, Rasheed Adeleke, Cyril C. Nwangburuka, Jana Hajšlová, Christopher T. Elliott, Rudolf Krska
Software Mentions: 3
Published: almost 6 years ago

10.1111/evo.13217

Developmental mechanisms of macroevolutionary change in the tetrapod axis: A case study of Sauropterygia
Cited by: 20
Author(s): Laura C. Soul, Roger Benson
Software Mentions: 3
Published: over 7 years ago

10.2807/1560-7917.ES.2019.24.50.1900130

Towards standardisation: comparison of five whole genome sequencing (WGS) analysis pipelines for detection of epidemiologically linked tuberculosis cases
Cited by: 32
Author(s): Rana Jajou, Thomas A. Kohl, Timothy M Walker, Anders Norman, Daniela María Cirillo, Elisa Tagliani, Stefan Niemann, Albert J. de Neeling, Troels Lillebæk, Richard Anthony, Dick van Soolingen
Software Mentions: 3
Published: almost 5 years ago

10.1080/22221751.2020.1821582

Genomic epidemiology of emerging ESBL-producing Salmonella Kentucky blaCTX-M-14b in Europe
Cited by: 24
Author(s): Elena Claudia Coipan, Therese Westrell, Angela H.A.M. van Hoek, Erik Alm, Saara Kotila, Bas Berbers, Sigrid C. J. De Keersmaecker, Pieter‐Jan Ceyssens, Maria Louise Borg, Marie Anne Chattaway, Jacquelyn McCormick, Timothy J. Dallman, Eelco Franz
Software Mentions: 3
Published: almost 5 years ago

10.3389/fpls.2021.637236

Floral Longevity of Paphiopedilum and Cypripedium Is Associated With Floral Morphology
Cited by: 3
Author(s): Fengping Zhang, Jing-Qiu Feng, Jialin Huang, Wei Huang, Xuewei Fu, Hu Hong, Shi‐Bao Zhang
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2017.01619

Tradeoff between Stem Hydraulic Efficiency and Mechanical Strength Affects Leaf–Stem Allometry in 28 Ficus Tree Species
Cited by: 34
Author(s): Ze-Xin Fan, Frank J. Sterck, Shi Bao Zhang, Pei Li Fu, Guang Hao
Software Mentions: 3
Published: about 7 years ago

10.3389/fpls.2019.00531

Target SSR-Seq: A Novel SSR Genotyping Technology Associate With Perfect SSRs in Genetic Analysis of Cucumber Varieties
Cited by: 34
Author(s): Jingjing Yang, Jian Zhang, Ruixi Han, Feng Zhang, Aijun Mao, Jianxun Luo, Bobo Dong, Hui Liu, Hao Tang, Jianan Zhang, Changlong Wen
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.5984

Reappraising plastid markers of the red algae for phylogenetic community ecology in the genomic era
Cited by: 5
Author(s): Shing Hei Zhan, Chun‐Chi Shih, Shao‐Lun Liu
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2164-15-548

The Arabidopsis Kinome: phylogeny and evolutionary insights into functional diversification
Cited by: 106
Author(s): Monika Zulawski, G Schulze, Rostyslav Braginets, Stefanie Hartmann, Waltraud X. Schulze
Software Mentions: 3
Published: over 10 years ago

10.3389/fpls.2018.00400

Genetic Resources in the “Calabaza Pipiana” Squash (Cucurbita argyrosperma) in Mexico: Genetic Diversity, Genetic Differentiation and Distribution Models
Cited by: 19
Author(s): Guillermo Sánchez‐de la Vega, Gabriela Castellanos‐Morales, Niza Gámez, Helena S. Hernández‐Rosales, Alejandra Vázquez‐Lobo, Erika Aguirre‐Planter, Juan P. Jaramillo‐Correa, Salvador Montes‐Hernández, Rafael Lira‐Saade, Luis E. Eguiarte
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.3553

Mitochondrial DNA of pre‐last glacial maximum red deer from NW Spain suggests a more complex phylogeographical history for the species
Cited by: 11
Author(s): Alba Rey‐Iglesia, Aurora Grandal-d’Anglade, Paula F. Campos, Anders J. Hansen
Software Mentions: 3
Published: about 7 years ago

10.1002/ece3.6749

The insertion of a mitochondrial selfish element into the nuclear genome and its consequences
Cited by: 2
Author(s): Julien Dutheil, Karin Münch, Klaas Schotanus, Eva H. Stukenbrock, Regine Kahmann
Software Mentions: 3
Published: about 4 years ago

10.1002/ece3.5812

Nest attendance by tropical and temperate passerine birds: Same constancy, different strategy
Cited by: 7
Author(s): Suzanne H. Austin, W. Douglas Robinson, Vincenzo A. Ellis, Tara Rodden Robinson, Robert E. Ricklefs
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.5193

Contagious fear: Escape behavior increases with flock size in European gregarious birds
Cited by: 45
Author(s): Federico Morelli, Yanina Benedetti, Mario Dı́az, Tomáš Grim, Juan Diego Ibáñez‐Álamo, Jukka Jokimäki, Marja‐Liisa Kaisanlahti‐Jokimäki, Kunter Tätte, Gábor Markó, Yiting Jiang, Piotr Tryjanowski, Anders Pape Møller
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.1131

Parallel adaptations to nectarivory in parrots, key innovations and the diversification of the<scp>L</scp>oriinae
Cited by: 21
Author(s): Manuel Schweizer, Marcel Güntert, Ole Seehausen, Christoph Leuenberger, Stefan Hertwig
Software Mentions: 3
Published: over 10 years ago

10.1002/ece3.2555

Mass, phylogeny, and temperature are sufficient to explain differences in metabolic scaling across mammalian orders?
Cited by: 13
Author(s): Eva Maria Griebeler, Jan Werner
Software Mentions: 3
Published: about 8 years ago

10.1186/s12864-019-6015-4

Tracking the adoption of bread wheat varieties in Afghanistan using DNA fingerprinting
Cited by: 11
Author(s): Susanne Dreisigacker, Rajiv Sharma, Eric Huttner, Aziz Karimov, M. Qasem Obaidi, Pawan K. Singh, Carolina Sansaloni, Rosemary Shrestha, Kai Sonder, Hans J. Braun
Software Mentions: 3
Published: over 5 years ago

10.1186/s12862-021-01878-7

Cospeciation of coronavirus and paramyxovirus with their bat hosts in the same geographical areas
Cited by: 6
Author(s): Jie Liang, Chenfeng Zhu, Libiao Zhang
Software Mentions: 3
Published: over 3 years ago

10.1002/eap.1764

Quantifying carbon stocks in shifting cultivation landscapes under divergent management scenarios relevant to REDD+
Cited by: 20
Author(s): Joli R. Borah, Karl L. Evans, David P. Edwards
Software Mentions: 3
Published: over 6 years ago

10.1186/s12862-021-01822-9

Prevalence and relationship of endosymbiotic Wolbachia in the butterfly genus Erebia
Cited by: 6
Author(s): Kay Lucek, Selim Bouaouina, Amanda Jospin, Andrea Grill, Jurriaan M. de Vos
Software Mentions: 3
Published: over 3 years ago

10.3389/fpsyg.2021.615148

The Developmental Process of Peer Support Networks: The Role of Friendship
Cited by: 6
Author(s): Lingfei Wang, Lichan Liang, Zhengguang Liu, Keman Yuan, Jiawen Ju, Yufang Bian
Software Mentions: 3
Published: almost 4 years ago

10.1128/mSphereDirect.00187-17

Phylogenetic Analyses Suggest that Factors Other Than the Capsid Protein Play a Role in the Epidemic Potential of GII.2 Norovirus
Cited by: 79
Author(s): Kentaro Tohma, Cara J. Lepore, Lauren A. Ford-Siltz, Gabriel I. Parra
Software Mentions: 3
Published: over 7 years ago

10.1186/s12885-017-3059-1

Stepwise addition of genetic changes correlated with histological change from “well-differentiated” to “sarcomatoid” phenotypes: a case report
Cited by: 24
Author(s): Taichiro Goto, Yosuke Hirotsu, Hitoshi Mochizuki, Takahiro Nakagomi, Toshio Oyama, Kenji Amemiya, Masao Omata
Software Mentions: 3
Published: almost 8 years ago

10.1016/j.cell.2020.11.020

Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity
Cited by: 787
Author(s): Erik Volz, Verity Hill, John McCrone, Anna Price, David A. Jorgensen, Áine O’Toole, Joel Southgate, Robert A. Johnson, Ben Jackson, Fabrícia F. Nascimento, Sara Rey, Samuel M. Nicholls, Rachel Colquhoun, Ana da Silva Filipe, James G. Shepherd, David Pascall, Rajiv Shah, Natasha Jesudason, Kathy Li, Ruth F. Jarrett, Nicole Pacchiarini, Matthew Bull, Lily Geidelberg, Igor Siveroni, Ian Goodfellow, Nicholas J. Loman, Oliver G. Pybus, David L. Robertson, Emma C. Thomson, Andrew Rambaut, Thomas R. Connor
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0069375

Osteology of Huabeisaurus allocotus (Sauropoda: Titanosauriformes) from the Upper Cretaceous of China
Cited by: 51
Author(s): Michael D. D’Emic, Philip D. Mannion, Paul Upchurch, Roger B. J. Benson, Pang Qiqing, Cheng Zhengwu
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0137085

Common Ancestry Is a Poor Predictor of Competitive Traits in Freshwater Green Algae
Cited by: 19
Author(s): Anita Narwani, Markos A. Alexandrou, James Herrin, Alaina Vouaux, Chunlin Zhou, Todd H. Oakley, Bradley J. Cardinale
Software Mentions: 3
Published: about 9 years ago

10.1186/s12983-019-0342-9

Assesment and interpretation of negative forelimb allometry in the evolution of non-avian Theropoda
Cited by: 5
Author(s): José A. Palma Liberona, Sergio Soto‐Acuña, Marco A. Méndez, Alexander O. Vargas
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0231533

Comparison of the ruminal and fecal microbiotas in beef calves supplemented or not with concentrate
Cited by: 47
Author(s): Jeferson M. Lourenço, Troy J. Kieran, Darren S. Seidel, Travis C. Glenn, Magali Floriano da Silveira, Todd R. Callaway, R. L. Stewart
Software Mentions: 3
Published: over 4 years ago

10.3390/genes9050262

Genomic Differentiation during Speciation-with-Gene-Flow: Comparing Geographic and Host-Related Variation in Divergent Life History Adaptation in Rhagoletis pomonella
Cited by: 61
Author(s): Meredith M. Doellman, Gregory J. Ragland, Glen R. Hood, Peter J. Meyers, Scott P. Egan, Thomas H. Q. Powell, Peter Lazorchak, Mary M. Glover, Cheyenne Tait, Hannes Schuler, Daniel A. Hahn, Stewart H. Berlocher, James J. Smith, Patrik Nosil, Jeffrey L. Feder
Software Mentions: 3
Published: over 6 years ago

10.3390/genes10060461

Diversity of “Ca. Micrarchaeota” in Two Distinct Types of Acidic Environments and Their Associations with Thermoplasmatales
Cited by: 19
Author(s): Olga V. Golyshina, Rafael Bargiela, Stepan V. Toshchakov, N. A. Chernyh, Soshila Ramayah, Aleksei A. Korzhenkov, Ilya V. Kublanov, Peter N. Golyshin
Software Mentions: 3
Published: over 5 years ago

10.1186/s13059-017-1229-8

Epigenomic and functional analyses reveal roles of epialleles in the loss of photoperiod sensitivity during domestication of allotetraploid cottons
Cited by: 142
Author(s): Qingxin Song, Tianzhen Zhang, David M. Stelly, Z Jeffrey Chen
Software Mentions: 3
Published: over 7 years ago

10.1186/s13059-018-1613-z

GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
Cited by: 25
Author(s): Paulina Bolívar, Laurent Guéguen, Laurent Duret, Hans Ellegren, Carina F. Mugal
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0167821

A Whole Genome DArTseq and SNP Analysis for Genetic Diversity Assessment in Durum Wheat from Central Fertile Crescent
Cited by: 114
Author(s): Faheem Shehzad Baloch, Ahmad Alsaleh, Muhammad Qasim Shahid, Vahdettin Çi̇ftçi̇, Luis E. Sáenz de Miera, Muhammad Aasım, Muhammad Azhar Nadeem, Hüsnü Aktaş, Hakan Özkan, Rüştü Hatipoğlu
Software Mentions: 3
Published: almost 8 years ago

10.1371/journal.pone.0146221

Osteopathology in Rhinocerotidae from 50 Million Years to the Present
Cited by: 11
Author(s): Kelsey T. Stilson, Samantha S. B. Hopkins, Edward B. Davis
Software Mentions: 3
Published: almost 9 years ago

10.1186/s13059-020-02208-8

Evolution of regulatory networks associated with traits under selection in cichlids
Cited by: 14
Author(s): Tarang K. Mehta, Christopher Koch, William G. Nash, Sara Knaack, Padhmanand Sudhakar, Márton Ölbei, Sarah Bastkowski, Luca Penso-Dolfin, Wilfried Haerty, Sushmita Roy, Federica Di-Palma
Software Mentions: 3
Published: almost 4 years ago

10.1093/gbe/evv164

Genome-Wide SNP Analysis of Southern African Populations Provides New Insights into the Dispersal of Bantu-Speaking Groups
Cited by: 24
Author(s): Miguel González‐Santos, Francesco Montinaro, Ockie Oosthuizen, Erica Oosthuizen, George B.J. Busby, Paolo Anagnostou, Giovanni Destro-Bisol, Vincenzo Lorenzo Pascali, Cristian Capelli
Software Mentions: 3
Published: about 9 years ago

10.1371/journal.pone.0158523

Social Complexification and Pig (Sus scrofa) Husbandry in Ancient China: A Combined Geometric Morphometric and Isotopic Approach
Cited by: 40
Author(s): Thomas Cucchi, Lingling Dai, Marie Balasse, Chen Zhao, Gao Jiang-tao, Yaowu Hu, Jing Yuan, Jean‐Denis Vigne
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0193268

Is local trait variation related to total range size of tropical trees?
Cited by: 7
Author(s): Eduardo Chacón‐Madrigal, Wolfgang Wanek, Peter Hietz, Stefan Dullinger
Software Mentions: 3
Published: over 6 years ago

10.1093/gbe/evab064

The Effects of GC-Biased Gene Conversion on Patterns of Genetic Diversity among and across Butterfly Genomes
Cited by: 8
Author(s): Jesper Boman, Carina F. Mugal, Niclas Backström
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0151744

Opposing Patterns of Seasonal Change in Functional and Phylogenetic Diversity of Tadpole Assemblages
Cited by: 18
Author(s): Axel Strauß, François Guilhaumon, Roger Daniel Randrianiaina, Katharina C. Wollenberg Valero, Miguel Vences, Julian Glos
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0054023

Measures of the Constitutive Immune System Are Linked to Diet and Roosting Habits of Neotropical Bats
Cited by: 67
Author(s): Karin Schneeberger, Gábor Á. Czirják, Christian C. Voigt
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0187575

Fungal communities in ancient peatlands developed from different periods in the Sanjiang Plain, China
Cited by: 17
Author(s): Zhenqing Zhang, Xue Zhou, Lei Tian, Lina Ma, Shasha Luo, Jianfeng Zhang, Xiujun Li, Chunjie Tian
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0230865

Guano morphology has the potential to inform conservation strategies in British bats
Cited by: 4
Author(s): Roselyn Ware, Benjamin Garrod, Hannah Macdonald, Robin G. Allaby
Software Mentions: 3
Published: over 4 years ago

10.1038/s41438-020-0322-4

Complex migration history is revealed by genetic diversity of tomato samples collected in Italy during the eighteenth and nineteenth centuries
Cited by: 2
Author(s): M. R. Ercolano, Antimo Di Donato, Walter Sanseverino, Maria Mafalda Barbella, Antonino De Natale, Luigi Frusciante
Software Mentions: 3
Published: over 4 years ago

10.3390/insects10090262

Optical Modelling and Phylogenetic Analysis Provide Clues to the Likely Function of Corneal Nipple Arrays in Butterflies and Moths
Cited by: 5
Author(s): Adrian Spalding, Katie Shanks, Jonathan Bennie, Ursula Potter, Richard H. ffrench‐Constant
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0032819

Relating Habitat and Climatic Niches in Birds
Cited by: 90
Author(s): Jean‐Yves Barnagaud, Vincent Devictor, Frédéric Jiguet, Morgane Barbet‐Massin, Isabelle Le Viol, Frédéric Archaux
Software Mentions: 3
Published: over 12 years ago

10.1371/journal.pone.0162834

A Novel Colonial Ciliate Zoothamnium ignavum sp. nov. (Ciliophora, Oligohymenophorea) and Its Ectosymbiont Candidatus Navis piranensis gen. nov., sp. nov. from Shallow-Water Wood Falls
Cited by: 28
Author(s): Lukas Schuster, Monika Bright
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0140780

Variation in Complexity of Infection and Transmission Stability between Neighbouring Populations of Plasmodium vivax in Southern Ethiopia
Cited by: 31
Author(s): Sisay Getachew, Sheren To, Hidayat Trimarsanto, Kamala Thriemer, Taane G. Clark, Beyene Petros, Abraham Aseffa, Sarah Auburn
Software Mentions: 3
Published: about 9 years ago

10.1186/s12862-014-0233-9

The organization and evolution of the Responder satellite in species of the Drosophila melanogaster group: dynamic evolution of a target of meiotic drive
Cited by: 55
Author(s): Amanda M. Larracuente
Software Mentions: 3
Published: almost 10 years ago

10.1371/journal.pone.0086231

Has Pollination Mode Shaped the Evolution of Ficus Pollen?
Cited by: 18
Author(s): Gang Wang, Jin Chen, Zongbo Li, Fengping Zhang, Da‐Rong Yang
Software Mentions: 3
Published: almost 11 years ago

10.1186/1742-9994-10-36

Food load manipulation ability shapes flight morphology in females of central-place foraging Hymenoptera
Cited by: 10
Author(s): Carlo Polidori, Angelica Crottini, Lidia Della Venezia, Jesús Selfa, Nicola Saino, Diego Rubolini
Software Mentions: 2
Published: almost 12 years ago

10.1007/s11557-020-01599-z

Multilocus phylogeny- and fruiting feature-assisted delimitation of European Cyclocybe aegerita from a new Asian species complex and related species
Cited by: 15
Author(s): Roman A. Frings, Jose G. Maciá‐Vicente, Sandra Buße, Adéla Čmoková, Harald Kellner, Martin Hofrichter, Florian Hennicke
Software Mentions: 2
Published: about 4 years ago

10.1534/g3.116.034314

Tissue Culture as a Source of Replicates in Nonmodel Plants: Variation in Cold Response in Arabidopsis lyrata ssp. petraea
Cited by: 0
Author(s): Tanaka Kenta, Jessica E. M. Edwards, Roger K. Butlin, Terry Burke, W. Paul Quick, Peter E. Urwin, Matthew P. Davey
Software Mentions: 2
Published: almost 8 years ago

10.1186/1742-9994-8-26

Prevalence of blood parasites in seabirds - a review
Cited by: 64
Author(s): Petra Quillfeldt, Elena Arriero, Javier Martı́nez, Juan F. Masello, Santiago Merino
Software Mentions: 2
Published: almost 14 years ago

10.1371/journal.pcbi.1003973

Comprehensive Sieve Analysis of Breakthrough HIV-1 Sequences in the RV144 Vaccine Efficacy Trial
Cited by: 49
Author(s): Paul T. Edlefsen, Morgane Rolland, Tomer Hertz, Sodsai Tovanabutra, Andrew J. Gartland, Allan C. deCamp, Craig A. Magaret, Hasan Ahmed, Raphaël Gottardo, Michal Juraska, Connor O. McCoy, Brendan B. Larsen, Eric Sanders‐Buell, Chris Carrico, Sergey Menis, Meera Bose, Rv Sequencing Team, Mónica Arroyo, Robert J. O’Connell, Sorachai Nitayaphan, Punnee Pitisuttithum, Jaranit Kaewkungwal, Supachai Rerks-Ngarm, Merlin L. Robb, Tatsiana Kirys, Ivelin S. Georgiev, Peter D. Kwong, Konrad Scheffler, Sergei L. Kosakovsky Pond, Jonathan M. Carlson, Nelson L. Michael, William R. Schief, James I. Mullins, Jerome H. Kim, Peter B. Gilbert
Software Mentions: 2
Published: almost 10 years ago

10.3389/fmicb.2016.01479

Evaluation of the Microbial Diversity in Amyotrophic Lateral Sclerosis Using High-Throughput Sequencing
Cited by: 126
Author(s): Xin Fang, Xin Wang, Shaoguo Yang, Fanbao Meng, Xiaolei Wang, Hua Wei, Tingtao Chen
Software Mentions: 2
Published: about 8 years ago

Projects: pypi: ape

Papers Mentioning ape 918