Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: analysis
https://packages.ecosyste.ms/registries/pypi.org/packages/analysis
Source code analysis of Python programs
8 versions
Latest release: over 18 years ago
348 downloads last month
Papers Mentioning analysis 2,036
10.1007/s10336-018-1551-2
Unexpected dietary preferences of Eurasian Spoonbills in the Dutch Wadden Sea: spoonbills mainly feed on small fish not shrimpCited by: 5
Author(s): Jeltje Jouta, Petra de Goeij, Tamar Lok, Estefania Velilla, C.J. Camphuysen, M.F. Leopold, Henk W. van der Veer, Han Olff, Otto Overdijk, Theunis Piersma
Software Mentions: 1
Published: over 6 years ago
10.1002/jor.23563
Systems approaches in osteoarthritis: Identifying routes to novel diagnostic and therapeutic strategiesCited by: 9
Author(s): Alan Mueller, Mandy J. Peffers, Carole J. Proctor, Peter Clegg
Software Mentions: 1
Published: over 7 years ago
10.1016/j.isci.2018.05.012
A Combined In Vitro/In Silico Approach to Identifying Off-Target Receptor ToxicityCited by: 4
Author(s): Joseph Leedale, Kieran J. Sharkey, Helen Colley, Áine M. Norton, David Peeney, Chantelle L. Mason, Jean G. Sathish, Craig Murdoch, Parveen Sharma, Steven D. Webb
Software Mentions: 1
Published: over 6 years ago
10.1186/s13048-014-0120-4
Primordial follicle activation in the ovary of Ames dwarf miceCited by: 25
Author(s): Augusto Schneider, Xu Zhi, Fabiana Moreira, Thomaz Lucia, Rafael Gianella Mondadori, Michał M. Masternak
Software Mentions: 1
Published: almost 10 years ago
10.18632/oncotarget.7194
Oncogenic potential of histone-variant H2A.Z.1 and its regulatory role in cell cycle and epithelial-mesenchymal transition in liver cancerCited by: 70
Author(s): Hee Doo Yang, Pum-Joon Kim, Jung Woo Eun, Qingyu Shen, Hyung Seok Kim, Woo Chan Shin, Young Min Ahn, Won Sang Park, Jung Young Lee, Suk Woo Nam
Software Mentions: 1
Published: almost 9 years ago
10.18632/oncotarget.8684
Circulating cell-free DNA has a high degree of specificity to detect exon 19 deletions and the single-point substitution mutation L858R in non-small cell lung cancerCited by: 48
Author(s): Xin Qian, Jia Liu, Yuhui Sun, Meifang Wang, Lei HuaiDing, Guangheng Luo, Xianjun Liu, Chang Xiong, Dan Liú, Jie Liu, Yijun Tang
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.10486
High expression of WISP1 in colon cancer is associated with apoptosis, invasion and poor prognosisCited by: 41
Author(s): Jianghong Wu, Ziwen Long, Hong Cai, Chunyan Du, Xiaowen Liu, Shengjia Yu, Yanong Wang
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.13483
<i>TP53</i> mutations, expression and interaction networks in human cancersCited by: 97
Author(s): Xiaosheng Wang, Qiangming Sun
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.15340
Upregulation of mucin glycoprotein MUC1 in the progression to esophageal adenocarcinoma and therapeutic potential with a targeted photoactive antibody-drug conjugateCited by: 19
Author(s): Mohammed A. Butt, Hayley Pye, Rehan Haidry, Dahmane Oukrif, Saif-U-Rehman Khan, Ignazio Puccio, Michael Gandy, Halla W. Reinert, Ellie Bloom, Mohammed Rashid, Gökhan Yahioglu, Mahendra P. Deonarain, Rifat Hamoudi, Manuel Rodriguez‐Justo, Marco Novelli, Laurence Lovat
Software Mentions: 1
Published: almost 8 years ago
10.18632/oncotarget.15688
BRCA1 controls the cell division axis and governs ploidy and phenotype in human mammary cellsCited by: 14
Author(s): Zhengcheng He, Nagarajan Kannan, Oksana Nemirovsky, Helen Chen, Marisa Connell, Brian J. Taylor, Jihong Jiang, Linda M. Pilarski, Markus Fleisch, Dieter Niederacher, Miguel Ángel Pujana, Connie J. Eaves, Christopher A. Maxwell
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.17172
Rewiring carbohydrate catabolism differentially affects survival of pancreatic cancer cell lines with diverse metabolic profilesCited by: 17
Author(s): Tiziana Tataranni, Francesca Agriesti, Vitalba Ruggieri, Carmela Mazzoccoli, Vittorio Simeon, Ilaria Laurenzana, Rosella Scrima, Valerio Pazienza, Nazzareno Capitanio, Cláudia Piccoli
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.17893
Advances in single-cell RNA sequencing and its applications in cancer researchCited by: 64
Author(s): Sibo Zhu, Tao Qing, Yuanting Zheng, Li Jin, Leming Shi
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.18021
Single-cell genomic analysis of head and neck squamous cell carcinomaCited by: 17
Author(s): Andres Stucky, Parish P. Sedghizadeh, Susan Mahabady, Xuelian Chen, Cheng Zhang, Gang Zhang, Xi Zhang, Jiang Zhong
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.20748
Plasma-derived extracellular vesicle proteins as a source of biomarkers for lung adenocarcinomaCited by: 59
Author(s): Jody Vykoukal, Nan Sun, Clemente Aguilar-Bonavides, Hiroyuki Katayama, Ichidai Tanaka, Johannes F. Fahrmann, Michela Capello, Junya Fujimoto, Mitzi Aguilar, Ignacio I. Wistuba, Ayumu Taguchi, Edwin J. Ostrin, Samir Hanash
Software Mentions: 1
Published: about 7 years ago
10.18632/oncotarget.22604
The implication from RAS/RAF/ERK signaling pathway increased activation in epirubicin treated triple negative breast cancerCited by: 23
Author(s): Jianbo Huang, Qingqing Luo, Yun Xiao, Hongyuan Li, Lingna Kong, Guosheng Ren
Software Mentions: 1
Published: about 7 years ago
10.18632/oncotarget.23408
Identification of a novel MYO7A mutation in Usher syndrome type 1Cited by: 8
Author(s): Cheng Ling, Hongsong Yu, Yan Jiang, Juan He, Sisi Pu, Xin Li, Li Zhang
Software Mentions: 1
Published: almost 7 years ago
10.18632/oncotarget.23355
Predictive factors for 6 <i>vs</i> 12 cycles of Folfiri-Bevacizumab in metastatic colorectal cancerCited by: 1
Author(s): Vincenzo Formica, Maria Teresa Ionta, B. Massidda, Giacomo Vessia, Luigi Maiorino, Rossana Casaretti, D. Natale, Giuseppe Barberis, Gianfranco Filippelli, Ettore Greco, Livio Blasi, S. Mancarella, Anna Russo, Enrico Barbato, Liberato Di Lullo, Mario Roselli
Software Mentions: 1
Published: almost 7 years ago
10.18632/oncotarget.24398
Using computer assisted image analysis to determine the optimal Ki67 threshold for predicting outcome of invasive breast cancerCited by: 11
Author(s): Timothy Kwang Yong Tay, Aye Aye Thike, Nirmala Pathmanathan, Ana Richelia Jara-Lazaro, Jabed Iqbal, Adeline Shi Hui Sng, Heng Seow Ye, Jeffrey Chun Tatt Lim, Valerie Cui Yun Koh, Jane Sie Yong Tan, Joe Yeong, Zi Long Chow, Hui Hua Li, Chee Leong Cheng, Puay Hoon Tan
Software Mentions: 1
Published: almost 7 years ago
10.18632/oncotarget.26863
Differential microglia and macrophage profiles in human IDH-mutant and -wild type glioblastomaCited by: 57
Author(s): Candice C. Poon, Paul M. Gordon, Katherine Liu, Runze Yang, Susobhan Sarkar, Reza Mirzaei, Shiekh Tanveer Ahmad, Martha Hughes, V. Wee Yong, John J. Kelly
Software Mentions: 1
Published: over 5 years ago
10.1186/s13018-019-1445-x
Artesunate prevents knee intraarticular adhesion via PRKR-like ER kinase (PERK) signal pathwayCited by: 6
Author(s): Hui Chen, Tao Jin, Jingcheng Wang, Lianqi Yan
Software Mentions: 1
Published: almost 5 years ago
10.3390/jpm11020155
Treatment-Resistant Depression Revisited: A Glimmer of HopeCited by: 37
Author(s): Angelos Halaris, Emilie Sohl, Elizabeth A. Whitham
Software Mentions: 1
Published: over 3 years ago
10.3390/jpm11080739
High BMI1 Expression with Low CD8+ and CD4+ T Cell Activity Could Promote Breast Cancer Cell Survival: A Machine Learning ApproachCited by: 1
Author(s): Yun Jae Chung, Kyueng‐Whan Min, Dong-Hoon Kim, Byoung Kwan Son, Sung Il Im, Seoung Wan Chae, Mi Jung Kwon
Software Mentions: 1
Published: over 3 years ago
10.1515/med-2020-0128
GABRD promotes progression and predicts poor prognosis in colorectal cancerCited by: 17
Author(s): Gengming Niu, Li Deng, Xiaotian Zhang, Zhiqing Hu, Shanliang Han, Ke Xu, Runqi Hong, He Meng, Chongwei Ke
Software Mentions: 1
Published: almost 5 years ago
10.6028/jres.093.035
Evolutionary factor-analysisCited by: 6
Author(s): Kathleen Schostack, P. P. Parekh, Shivam Patel, Edmund R. Malinowski
Software Mentions: 1
Published: over 36 years ago
10.1186/1750-1172-7-103
Four new loci associations discovered by pathway-based and network analyses of the genome-wide variability profile of Hirschsprung’s diseaseCited by: 7
Author(s): Raquel M. Fernández, Marta Bleda, Rocío Núñez-Torres, Ignacio Medina, Berta Lasa, Luz García-Alonso, Ana Torroglosa, Martina Marbá, María del Valle Enguix-Riego, David Montaner, Guillermo Antiñolo, Joaquı́n Dopazo, Salud Borrego
Software Mentions: 1
Published: almost 12 years ago
10.1002/jts.22333
Treatment Efficacy for Veterans With Posttraumatic Stress Disorder: Latent Class Trajectories of Treatment Response and Their PredictorsCited by: 31
Author(s): Dominic Murphy, Kirsten V. Smith
Software Mentions: 1
Published: about 6 years ago
10.1007/s11524-014-9885-4
Prevalence of HIV, Syphilis, and Other Sexually Transmitted Infections among MSM from Three Cities in PanamaCited by: 13
Author(s): Shilpa Hakre, Griselda Arteaga, Aurelio E. Núñez, Nelson Arambu, Bulbulgul Aumakhan, Meilin Liu, Sheila A. Peel, Juan Miguel Pascale, Paul T. Scott
Software Mentions: 1
Published: over 10 years ago
10.1002/nop2.928
The impact of COVID‐19 on work, training and well‐being experiences of nursing associates in England: A cross‐sectional surveyCited by: 13
Author(s): Rachel King, Tony Ryan, Michaela Senek, Emily Wood, Brian F. Taylor, Angela Tod, Ashfaque Ahmed Talpur, Steve Robertson
Software Mentions: 1
Published: over 3 years ago
10.1523/ENEURO.0057-21.2021
Tracking Single Molecule Dynamics in the Adult<i>Drosophila</i>BrainCited by: 4
Author(s): Adam Hines, Bruno van Swinderen
Software Mentions: 1
Published: over 3 years ago
10.1186/1475-2891-12-158
The metabolic signature associated with the Western dietary pattern: a cross-sectional studyCited by: 73
Author(s): Annie Bouchard-Mercier, Iwona Rudkowska, Simone Lemieux, Patrick Couture, Marie‐Claude Vohl
Software Mentions: 1
Published: almost 11 years ago
10.1186/1475-2891-10-35
A practical guide to bioelectrical impedance analysis using the example of chronic obstructive pulmonary diseaseCited by: 91
Author(s): Anja Walter-Kroker, Axel Kroker, Muriel Mattiucci-Guehlke, Thomas Glaab
Software Mentions: 1
Published: over 13 years ago
10.3390/nu13020460
Feeding Your Himalayan Expedition: Nutritional Signatures and Body Composition Adaptations of Trekkers and PortersCited by: 4
Author(s): Danilo Bondi, Anna Maria Aloisi, Tiziana Pietrangelo, Raffaela Piccinelli, Cinzia Le Donne, Tereza Jandova, Stefano Pieretti, Mattia Taraborrelli, Carmen Santangelo, Bruna Lattanzi, Vittore Verratti
Software Mentions: 1
Published: almost 4 years ago
10.3390/nu9070773
Quercetin and Green Tea Extract Supplementation Downregulates Genes Related to Tissue Inflammatory Responses to a 12-Week High Fat-Diet in MiceCited by: 37
Author(s): Lynn Cialdella‐Kam, Sujoy Ghosh, Mary Pat Meaney, Amy M. Knab, R. Andrew Shanely, David C. Nieman
Software Mentions: 1
Published: over 7 years ago
10.3390/nu13010194
The Effect of Gum Arabic (Acacia senegal) on Cardiovascular Risk Factors and Gastrointestinal Symptoms in Adults at Risk of Metabolic Syndrome: A Randomized Clinical TrialCited by: 13
Author(s): Amjad H. Jarrar, Lily Stojanovska, Vasso Apostolopoulos, Jack Feehan, Malik Bataineh, Leila Cheikh Ismail, Ayesha S. Al Dhaheri
Software Mentions: 1
Published: almost 4 years ago
10.3390/nu13093026
Metabolome Characteristics of Liver Autophagy Deficiency under Starvation Conditions in InfancyCited by: 1
Author(s): Kazuhito Sekiguchi, Hiroaki Miyahara, Masanori Inoue, Kyoko Kiyota, Kumiko Sakai, Toshikatsu Hanada, Kenji Ihara
Software Mentions: 1
Published: about 3 years ago