Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Zorro
https://packages.ecosyste.ms/registries/pypi.org/packages/Zorro
Network communication library, with zeromq support
4 versions
Latest release: over 10 years ago
16 downloads last month
Papers Mentioning Zorro 20
10.1002/aps3.11295
An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in AsteraceaeCited by: 24
Author(s): K. Jones, Tomáš Fér, Roswitha Schmickl, Rebecca B. Dikow, Vicki A. Funk, Sonia Herrando‐Moraira, Paul R. Johnston, Norbert Kilian, Carolina M. Siniscalchi, Alfonso Susanna, Marek Slovák, Ramhari Thapa, Linda E. Watson, Jennifer R. Mandel
Software Mentions: 5
Published: almost 5 years ago
10.1186/1471-2164-13-531
Comparative genomic analysis of human infective Trypanosoma cruzi lineages with the bat-restricted subspecies T. cruzi marinkelleiCited by: 57
Author(s): Oscar Franzén, Carlos Talavera-López, Stephen Ochaya, Claire E. Butler, Louisa A. Messenger, Michael D. Lewis, Martin S. Llewellyn, C. J. Marinkelle, Kevin M. Tyler, Michael A. Miles, Björn Andersson
Software Mentions: 5
Published: over 12 years ago
10.1186/s12864-016-2928-3
The genome of the emerging barley pathogen Ramularia collo-cygniCited by: 29
Author(s): Graham R. D. McGrann, Ambrose Andongabo, Elisabet Sjökvist, Urmi Trivedi, Francois Dussart, Maciej Kaczmarek, Ashleigh Mackenzie, J. M. Fountaine, Jeanette Taylor, Lindsay Paterson, K. Gorniak, F. J. Burnett, K. Kanyuka, K. E. Hammond‐Kosack, J. J. Rudd, Mark Blaxter, Neil D. Havis
Software Mentions: 4
Published: about 8 years ago
10.1042/BCJ20200715
Current data processing strategies for cryo-electron tomography and subtomogram averagingCited by: 35
Author(s): Euan Pyle, Giulia Zanetti
Software Mentions: 3
Published: over 3 years ago
10.1186/s12864-018-4743-5
Distinctive characters of Nostoc genomes in cyanolichensCited by: 30
Author(s): Andrey Gagunashvili, Ólafur S. Andrésson
Software Mentions: 3
Published: over 6 years ago
10.3389/fmicb.2018.01775
Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United StatesCited by: 33
Author(s): Rachel Mackelprang, Alyssa Grube, Regina Lamendella, Ederson da Conceição Jesus, Alex Copeland, Chao Liang, Randall D. Jackson, Charles W. Rice, Stefanie Kapucija, Bayan Parsa, Susannah G. Tringe, James M. Tiedje, Janet Jansson
Software Mentions: 2
Published: about 6 years ago
10.1186/1471-2105-14-S15-S16
Finishing bacterial genome assemblies with MixCited by: 41
Author(s): Hayssam Soueidan, Florence Maurier, Alexis Groppi, Pascal Sirand‐Pugnet, Florence Tardy, Christine Citti, Virginie Dupuy, Macha Nikolski
Software Mentions: 2
Published: almost 11 years ago
10.3389/fmicb.2020.01841
Comparative Genomic and Metabolomic Analyses of Two Pseudomonas aeruginosa Strains With Different Antifungal ActivitiesCited by: 13
Author(s): Shumin Wang, Zhun Huang, Qianbing Wan, Shuo Feng, Xiaochen Xie, Ruiling Zhang, Zhong Zhang
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.ppat.1006966
The impact of serotype-specific vaccination on phylodynamic parameters of Streptococcus pneumoniae and the pneumococcal pan-genomeCited by: 22
Author(s): Taj Azarian, Lindsay R. Grant, Brian J. Arnold, Laura L. Hammitt, Raymond Reid, Mathuram Santosham, Robert Weatherholtz, Novalene Goklish, Claudette M. Thompson, Stephen D. Bentley, Katherine L. O’Brien, William P. Hanage, Marc Lipsitch
Software Mentions: 2
Published: over 6 years ago
10.1186/1944-3277-10-15
Draft genome sequence and characterization of Desulfitobacterium hafniense PCE-SCited by: 19
Author(s): Tobias Goris, Bastian Hornung, Thomas Kruse, Anika Reinhold, Martin Westermann, Peter J. Schaap, Hauke Smidt, Gabriele Diekert
Software Mentions: 2
Published: over 9 years ago
10.1128/mBio.01814-19
Anaerobic Degradation of Non-Methane Alkanes by “ <i>Candidatus</i> Methanoliparia” in Hydrocarbon Seeps of the Gulf of MexicoCited by: 58
Author(s): Rafael Laso-Pérez, Cedric Jasper Hahn, Daan M. van Vliet, Halina E. Tegetmeyer, Florence Schubotz, Nadine T. Smit, Thomas Pape, Heiko Sahling, Gerhard Bohrmann, Antje Boetius, Katrin Knittel, Gunter Wegener
Software Mentions: 2
Published: about 5 years ago
10.3389/fmicb.2017.00222
Genome Sequence of Desulfurella amilsii Strain TR1 and Comparative Genomics of Desulfurellaceae FamilyCited by: 27
Author(s): Anna Patrícya Florentino, Alfons Johannes Maria Stams, Irene Sánchez‐Andrea
Software Mentions: 1
Published: over 7 years ago
10.1093/sysbio/syv033
Current Methods for Automated Filtering of Multiple Sequence Alignments Frequently Worsen Single-Gene Phylogenetic InferenceCited by: 184
Author(s): Ge Tan, Matthieu Muffato, Christian Ledergerber, Javier Herrero, Nick Goldman, Manuel Gil, Christophe Dessimoz
Software Mentions: 1
Published: over 9 years ago
10.7554/eLife.34292
Microbial eukaryotes have adapted to hypoxia by horizontal acquisitions of a gene involved in rhodoquinone biosynthesisCited by: 47
Author(s): Courtney W. Stairs, Laura Eme, Sergio A. Muñoz-Gómez, Alejandro Cohen, Graham Dellaire, Jennifer Shepherd, James P. Fawcett, Andrew J. Roger
Software Mentions: 1
Published: over 6 years ago
10.1038/sdata.2015.58
Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniaeCited by: 53
Author(s): Nicholas J. Croucher, Jonathan A. Finkelstein, Stephen I. Pelton, Julian Parkhill, Stephen D. Bentley, Marc Lipsitch, William P. Hanage
Software Mentions: 1
Published: almost 9 years ago
10.1107/S205225251801463X
A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysisCited by: 622
Author(s): Jasenko Zivanov, Takanori Nakane, S.H.W. Scheres
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pbio.1002394
Horizontal DNA Transfer Mechanisms of Bacteria as Weapons of Intragenomic ConflictCited by: 124
Author(s): Nicholas J. Croucher, Rafal Mostowy, Christopher Wymant, Paul Turner, Stephen D. Bentley, Christophe Fraser
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0063863
Evolutionary, Molecular and Genetic Analyses of Tic22 Homologues in Arabidopsis thaliana ChloroplastsCited by: 18
Author(s): Ali Reza Kasmati, Mats Töpel, Nadir Zaman Khan, Ramesh N. Patel, Qihua Ling, Sazzad Karim, Henrik Aronsson, Paul Jarvis
Software Mentions: 1
Published: over 11 years ago
10.3389/fmicb.2016.00304
Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring MetagenomesCited by: 42
Author(s): Daniel R. Colman, Zackary J. Jay, William P. Inskeep, Ryan edeM. Jennings, Kendra Maas, Douglas B. Rusch, Cristina Takacs-Vesbach
Software Mentions: 1
Published: over 8 years ago
10.1186/s12862-018-1261-7
Environmentally-driven gene content convergence and the Bacillus phylogenyCited by: 21
Author(s): Ismael Hernández-González, Gabriel Moreno‐Hagelsieb, Gabriela Olmedo-Álvarez
Software Mentions: 1
Published: almost 6 years ago