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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: XYalign

https://packages.ecosyste.ms/registries/pypi.org/packages/XYalign

Command line tools and python library to infer ploidy, correct for sex chromosome complement, and work with NGS data
6 versions
Latest release: almost 7 years ago
30 downloads last month

Enhanced Analysis
Repository Owner: Wilson Sayres Lab ARCHIVED Repositories (organization)
Codes from Wilson Sayres Lab projects - ARCHIVED VERSION Academic
README Analysis: DOI Found
Science Score: 85/100
Starting Score: 100 points
Bonuses:
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +2 Science terms in README
    1 scientific terms found in README
  • +10 DOI references
    1 DOI references found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -10 No science terms in description
    No scientific terms found in description
  • -25 Non-science indicators
    1 non-scientific terms found
Very Likely Science (85)

Papers Mentioning XYalign 8

10.3390/genes12010048
Probably Correct: Rescuing Repeats with Short and Long Reads
Cited by: 3
Author(s): Monika Čechová
Software Mentions: 5
Published: over 4 years ago
10.1186/s12859-021-04070-2
Large-scale labeling and assessment of sex bias in publicly available expression data
Cited by: 10
Author(s): Emily Flynn, Annie C. Y. Chang, Russ B. Altman
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-021-90170-1
Unique evolutionary trajectories of breast cancers with distinct genomic and spatial heterogeneity
Cited by: 0
Author(s): Tanya N. Phung, Timothy H. Webster, Elizabeth Lenkiewicz, Smriti Malasi, Mariacarla Andreozzi, Ann E. McCullough, Karen S. Anderson, Barbara A. Pockaj, Melissa A. Wilson, Michael T. Barrett
Software Mentions: 3
Published: about 4 years ago
10.1093/gigascience/giz074
Identifying, understanding, and correcting technical artifacts on the sex chromosomes in next-generation sequencing data
Cited by: 57
Author(s): Timothy H. Webster, Madeline Couse, Bruno M. Grande, Eric Karlins, Tanya N. Phung, Phillip A. Richmond, Whitney Whitford, Melissa A. Wilson
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-020-68939-7
Unique genomic and neoepitope landscapes across tumors: a study across time, tissues, and space within a single lynch syndrome patient
Cited by: 3
Author(s): Tanya N. Phung, Elizabeth Lenkiewicz, Smriti Malasi, Amit Sharma, Karen S. Anderson, Melissa A. Wilson, Barbara A. Pockaj, Michael T. Barrett
Software Mentions: 2
Published: about 5 years ago
10.1186/s13059-018-1427-z
Recent advances in plant and animal genomics are taking agriculture to new heights
Cited by: 2
Author(s): Hamid Beiki, Andrea L. Eveland, Christopher K. Tuggle
Software Mentions: 1
Published: over 7 years ago
10.12688/f1000research.10964.2
hackseq: Catalyzing collaboration between biological and computational scientists via hackathon
Cited by: 2
Author(s): hackseq Organizing Committee 2016
Software Mentions: 1
Published: over 8 years ago
10.3389/fonc.2020.597788
Genome-Wide Sex and Gender Differences in Cancer
Cited by: 58
Author(s): Camila M. Lopes‐Ramos, John Quackenbush, Dawn L. DeMeo
Software Mentions: 1
Published: over 4 years ago