Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: XYalign
https://packages.ecosyste.ms/registries/pypi.org/packages/XYalign
Command line tools and python library to infer ploidy, correct for sex chromosome complement, and work with NGS data
6 versions
Latest release: about 6 years ago
30 downloads last month
Papers Mentioning XYalign 8
10.3390/genes12010048
Probably Correct: Rescuing Repeats with Short and Long ReadsCited by: 3
Author(s): Monika Čechová
Software Mentions: 5
Published: almost 4 years ago
10.1186/s12859-021-04070-2
Large-scale labeling and assessment of sex bias in publicly available expression dataCited by: 10
Author(s): Emily Flynn, Annie C. Y. Chang, Russ B. Altman
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-021-90170-1
Unique evolutionary trajectories of breast cancers with distinct genomic and spatial heterogeneityCited by: 0
Author(s): Tanya N. Phung, Timothy H. Webster, Elizabeth Lenkiewicz, Smriti Malasi, Mariacarla Andreozzi, Ann E. McCullough, Karen S. Anderson, Barbara A. Pockaj, Melissa A. Wilson, Michael T. Barrett
Software Mentions: 3
Published: over 3 years ago
10.1093/gigascience/giz074
Identifying, understanding, and correcting technical artifacts on the sex chromosomes in next-generation sequencing dataCited by: 57
Author(s): Timothy H. Webster, Madeline Couse, Bruno M. Grande, Eric Karlins, Tanya N. Phung, Phillip A. Richmond, Whitney Whitford, Melissa A. Wilson
Software Mentions: 3
Published: over 5 years ago
10.1038/s41598-020-68939-7
Unique genomic and neoepitope landscapes across tumors: a study across time, tissues, and space within a single lynch syndrome patientCited by: 3
Author(s): Tanya N. Phung, Elizabeth Lenkiewicz, Smriti Malasi, Amit Sharma, Karen S. Anderson, Melissa A. Wilson, Barbara A. Pockaj, Michael T. Barrett
Software Mentions: 2
Published: over 4 years ago
10.1186/s13059-018-1427-z
Recent advances in plant and animal genomics are taking agriculture to new heightsCited by: 2
Author(s): Hamid Beiki, Andrea L. Eveland, Christopher K. Tuggle
Software Mentions: 1
Published: over 6 years ago
10.12688/f1000research.10964.2
hackseq: Catalyzing collaboration between biological and computational scientists via hackathonCited by: 2
Author(s): hackseq Organizing Committee 2016
Software Mentions: 1
Published: over 7 years ago
10.3389/fonc.2020.597788
Genome-Wide Sex and Gender Differences in CancerCited by: 58
Author(s): Camila M. Lopes‐Ramos, John Quackenbush, Dawn L. DeMeo
Software Mentions: 1
Published: almost 4 years ago