Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Unimod

https://packages.ecosyste.ms/registries/pypi.org/packages/Unimod

simple wrapper around the Unimod amino acid modificatins database
2 versions
Latest release: almost 12 years ago

Papers Mentioning Unimod 18

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets
Cited by: 129
Author(s): Yasset Perez‐Riverol, Qing Wei Xu, Rui Wang, Julian Uszkoreit, Johannes Griss, Aniel Sánchez, Florian Reisinger, Attila Csordás, Tobias Ternent, Noemi del-Toro, José A. Dianes, Martin Eisenacher, Henning Hermjakob, Juan Antonio Vizcaíno
Software Mentions: 5
Published: almost 9 years ago

10.1038/s41598-021-81986-y

Proteome-wide profiling and mapping of post translational modifications in human hearts
Cited by: 15
Author(s): Navratan Bagwan, Henrik H. El Ali, Alicia Lundby
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0235263

Visualisation tools for dependent peptide searches to support the exploration of in vitro protein modifications
Cited by: 2
Author(s): George W. Preston, Liping Yang, David H. Phillips, Claudia S. Maier
Software Mentions: 4
Published: over 4 years ago

10.1186/2047-2501-1-7

Dynamic integration of biological data sources using the data concierge
Cited by: 9
Author(s): Peng Gong
Software Mentions: 3
Published: over 11 years ago

10.1038/s41598-019-41309-8

Specific modification at the C-terminal lysine residue of the green fluorescent protein variant, GFPuv, expressed in Escherichia coli
Cited by: 7
Author(s): Takahiro Nakatani, Norio Yasui, Issei Tamura, Atsuko Yamashita
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-12-S14-S8

Identification of ubiquitin/ubiquitin-like protein modification from tandem mass spectra with various PTMs
Cited by: 4
Author(s): Chang Soo Kang, Gwan‐Su Yi
Software Mentions: 2
Published: almost 13 years ago

10.3390/cancers13153754

Cloud Computing Based Immunopeptidomics Utilizing Community Curated Variant Libraries Simplifies and Improves Neo-Antigen Discovery in Metastatic Melanoma
Cited by: 2
Author(s): Amol Prakash, Keira E. Mahoney, Benjamin C. Orsburn
Software Mentions: 2
Published: about 3 years ago

10.1016/j.bbapap.2013.02.017

Controlled vocabularies and ontologies in proteomics: Overview, principles and practice
Cited by: 40
Author(s): Gerhard Mayer, Andrew R. Jones, Pierre‐Alain Binz, Eric W. Deutsch, Sandra Orchard, Luisa Montecchi-Palazzi, Juan Antonio Vizcaíno, Henning Hermjakob, David Oveillero, Randall K. Julian, Christian Stephan, Helmut E. Meyer, Martin Eisenacher
Software Mentions: 2
Published: almost 11 years ago

10.1074/mcp.M116.058016

Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions
Cited by: 85
Author(s): Kshitij Khatri, Joshua Klein, Mitchell R. White, Oliver C. Grant, Nancy Leymarie, Robert J. Woods, Kevan L. Hartshorn, Joseph Zaia
Software Mentions: 2
Published: over 8 years ago

10.1074/mcp.TIR120.002216

PTM-Shepherd: Analysis and Summarization of Post-Translational and Chemical Modifications From Open Search Results
Cited by: 45
Author(s): Daniel Geiszler, Andy T. Kong, Dmitry M. Avtonomov, Fengchao Yu, Felipe da Veiga Leprevost, Alexey I. Nesvizhskii
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.06638

An internal thioester in a pathogen surface protein mediates covalent host binding
Cited by: 41
Author(s): Miriam Walden, John Edwards, Aleksandra Dziewulska, René Bergmann, Gerhard Saalbach, Su‐Yin Kan, Ona Kealoha Miller, Miriam Weckener, Rosemary J. Jackson, Sally L. Shirran, Catherine H. Botting, Gordon J. Florence, Manfred Rohde, Mark J. Banfield, Ulrich Schwarz‐Linek
Software Mentions: 1
Published: over 9 years ago

10.1155/2013/414069

Method for Rapid Protein Identification in a Large Database
Cited by: 4
Author(s): Wenli Zhang, Xianfeng Zhao
Software Mentions: 1
Published: almost 12 years ago

10.3390/biom10030411

System-Wide Analysis of Protein Acetylation and Ubiquitination Reveals a Diversified Regulation in Human Cancer Cells
Cited by: 8
Author(s): Hiroko Kozuka‐Hata, Aya Kitamura, Tomoko Hiroki, Aiko Aizawa, Kouhei Tsumoto, Jun‐ichiro Inoue, Masaaki Oyama
Software Mentions: 1
Published: over 4 years ago

10.3390/foods8100463

Thermal Processing of Peanut Grains Impairs Their Mimicked Gastrointestinal Digestion While Downstream Defatting Treatments Affect Digestomic Profiles
Cited by: 8
Author(s): Ivana Prodić, Katarina Smiljanić, Ana Simović, Jelena Radosavljević, Tanja Ćirković Veličković
Software Mentions: 1
Published: almost 5 years ago

10.1186/1477-5956-10-22

Production and proteomic characterisation of purified protein derivative from Mycobacterium avium subsp. paratuberculosis
Cited by: 13
Author(s): James W. Wynne, Brian J. Shiell, Michelle L. Colgrave, J.A. Vaughan, Gary Beddome, Wojtek P. Michalski
Software Mentions: 1
Published: almost 13 years ago

10.1186/1477-5956-11-1

Unrestrictive identification of post-translational modifications in the urine proteome without enrichment
Cited by: 26
Author(s): Liu Liu, Xuejiao Liu, Wei Sun, Mingxi Li, Youhe Gao
Software Mentions: 1
Published: almost 12 years ago

10.1002/pmic.201200514

From Peptidome to <scp>PRIDE</scp>: <scp>P</scp>ublic proteomics data migration at a large scale
Cited by: 12
Author(s): Attila Csordás, Rui Wang, Daniel Ríos, Florian Reisinger, Joseph Foster, Douglas J. Slotta, Juan Antonio Vizcaíno, Henning Hermjakob
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-13-34

PPINGUIN: Peptide Profiling Guided Identification of Proteins improves quantitation of iTRAQ ratios
Cited by: 4
Author(s): Chris Bauer, Frank Kleinjung, Dorothea Rutishauser, Christian Panse, Alexandra Chadt, Tanja Dreja, Hadi Al‐Hasani, Knut Reinert, Ralph Schlapbach, Johannes Schuchhardt
Software Mentions: 1
Published: over 12 years ago