Ecosyste.ms: Papers

10.1038/s41598-019-43356-7

The role of gut microbiota in shaping the relapse-remitting and chronic-progressive forms of multiple sclerosis in mouse models
Cited by: 59
Author(s): K. Alexa Orr Gandy, Jiajia Zhang, Prakash Nagarkatti, Mitzi Nagarkatti
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-53105-5

Y-chromosome haplogroups from Hun, Avar and conquering Hungarian period nomadic people of the Carpathian Basin
Cited by: 26
Author(s): Endre Neparáczki, Zoltán Maróti, Tibor Kalmár, K Maár, István Nagy, Dóra Latinovics, Ágnes Kustár, György Paragh, Erika Molnár, Antónia Marcsik, Csılla Balogh, Gábor Lőrinczy, Szilárd Sándor Gál, Péter Tomka, Bernadett Kovacsóczy, László Kovács, István Raskó, Tibor Török
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.3055

Specimen-level phylogenetics in paleontology using the Fossilized Birth-Death model with sampled ancestors
Cited by: 14
Author(s): Andrea Cau
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0223220

The prediction model of suicidal thoughts in Korean adults using Decision Tree Analysis: A nationwide cross-sectional study
Cited by: 8
Author(s): Sung‐Man Bae
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0108714

Mycobiome of the Bat White Nose Syndrome Affected Caves and Mines Reveals Diversity of Fungi and Local Adaptation by the Fungal Pathogen Pseudogymnoascus (Geomyces) destructans
Cited by: 37
Author(s): Tao Zhang, Tanya R. Victor, S. Rajkumar, Xiaojiang Li, Joseph C. Okoniewski, Alan C. Hicks, April Davis, Kelly Broussard, Shannon L. LaDeau, Sudha Chaturvedi
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0189423

Analysis of the tonsillar microbiome in young adults with sore throat reveals a high relative abundance of Fusobacterium necrophorum with low diversity
Cited by: 15
Author(s): T. Prescott Atkinson, Robert M. Centor, Li Xiao, Fuchenchu Wang, Xiangqin Cui, William Van Der Pol, Casey D. Morrow, Amy E. Ratliff, Donna M. Crabb, Arthur H. Totten, Carlos A. Estrada, Michael B. Faircloth, Ken B. Waites
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-021-83284-z

Ingestion of probiotic (Lactobacillus helveticus and Bifidobacterium longum) alters intestinal microbial structure and behavioral expression following social defeat stress
Cited by: 29
Author(s): Katherine A. Partrick, Anna M. Rosenhauer, Jérémie Auger, Amanda R. Arnold, Nicole M Ronczkowski, Lanaya M Jackson, Magen N Lord, Sara Abdulla, Benoît Chassaing, Kim L. Huhman
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0073008

People’s Perceptions about the Importance of Forests on Borneo
Cited by: 89
Author(s): Erik Meijaard, Nicola K. Abram, Jessie A. Wells, Anne-Sophie Pellier, Marc Ancrenaz, David Gaveau, Rebecca K. Runting, Kerrie Mengersen
Software Mentions: 2
Published: about 11 years ago

10.1007/s11192-017-2364-4

Identification of successful mentoring communities using network-based analysis of mentor–mentee relationships across Nobel laureates
Cited by: 22
Author(s): Julia H. Chariker, Yihang Zhang, John R. Pani, Eric C. Rouchka
Software Mentions: 2
Published: over 7 years ago

10.1186/s12879-016-1737-2

Whole genome sequencing reveals mycobacterial microevolution among concurrent isolates from sputum and blood in HIV infected TB patients
Cited by: 7
Author(s): Willy Ssengooba, Bouke C. de Jong, Moses Joloba, Frank Cobelens, Conor J. Meehan
Software Mentions: 2
Published: over 8 years ago

10.3390/s21051707

ZARATAMAP: Noise Characterization in the Scope of a Smart City through a Low Cost and Mobile Electronic Embedded System
Cited by: 5
Author(s): Unai Hernández-Jayo, Amaia Goñi
Software Mentions: 2
Published: over 3 years ago

10.3390/s21175838

A Key Management Protocol Based on the Hash Chain Key Generation for Securing LoRaWAN Networks
Cited by: 10
Author(s): Shimaa A. Abdel Hakeem, Sherine M. Abd El-Kader, HyungWon Kim
Software Mentions: 2
Published: about 3 years ago

10.1186/s40064-016-1828-y

An evaluation and selection problems of OSS-LMS packages
Cited by: 63
Author(s): Belal Najeh Abdullateef, Nur Fazidah Elias, Hazura Mohamed, A. A. Zaidan, B. B. Zaidan
Software Mentions: 2
Published: over 8 years ago

10.3390/cancers13153799

Altona Prognostic Index: A New Prognostic Index for ER-Positive and Her2-Negative Breast Cancer of No Special Type
Cited by: 2
Author(s): Anne-Sophie Wegscheider, Bernhard Ulm, Kay Friedrichs, Christoph Lindner, Axel Niendorf
Software Mentions: 2
Published: over 3 years ago

10.3390/cancers10120497

Developments in Stereotactic Body Radiotherapy
Cited by: 14
Author(s): A. Haridass
Software Mentions: 2
Published: almost 6 years ago

10.3390/toxins13020090

Analysis of E.U. Rapid Alert System (RASFF) Notifications for Aflatoxins in Exported U.S. Food and Feed Products for 2010–2019
Cited by: 18
Author(s): Ahmad Alshannaq, Jae‐Hyuk Yu
Software Mentions: 2
Published: almost 4 years ago

10.3390/membranes10090211

The Best-Practice Organism for Single-Species Studies of Antimicrobial Efficacy against Biofilms Is Pseudomonas aeruginosa
Cited by: 3
Author(s): Anna Curtin, Matthew C. Thibodeau, Heather L. Buckley
Software Mentions: 2
Published: about 4 years ago

10.3389/fnins.2020.595648

Pigment Dispersing Factors and Their Cognate Receptors in a Crustacean Model, With New Insights Into Distinct Neurons and Their Functions
Cited by: 3
Author(s): Jodi Alexander, Andrew Oliphant, David Wilcockson, Timothy Brendler-Spaeth, Heinrich Dircksen, S. G. Webster
Software Mentions: 1
Published: about 4 years ago

10.3389/fphys.2019.01502

Angiogenic Transformation in Human Brain Micro Endothelial Cells: Whole Genome DNA Methylation and Transcriptomic Analysis
Cited by: 11
Author(s): Dipali Goyal, Ravi Goyal
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpls.2016.01707

Efficient Identification of the Forest Tree Species in Aceraceae Using DNA Barcodes
Cited by: 25
Author(s): Yu-Wei Han, Dong Duan, Xiongfeng Ma, Yafei Jia, Zhan‐Lin Liu, Guifang Zhao, Zhong-Hu Li
Software Mentions: 1
Published: about 8 years ago

10.1534/genetics.120.303393

Inferring the Allelic Series at QTL in Multiparental Populations
Cited by: 12
Author(s): Wesley L. Crouse, Samir N. P. Kelada, William Valdar
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.gpb.2015.12.002

LVTree Viewer: An Interactive Display for the All-Species Living Tree Incorporating Automatic Comparison with Prokaryotic Systematics
Cited by: 3
Author(s): Guanghong Zuo, Xiao‐Yang Zhi, Zhonghui Xu, Bailin Hao
Software Mentions: 1
Published: over 8 years ago

10.9745/GHSP-D-15-00097

Empirically Derived Dehydration Scoring and Decision Tree Models for Children With Diarrhea: Assessment and Internal Validation in a Prospective Cohort Study in Dhaka, Bangladesh
Cited by: 25
Author(s): Adam C. Levine, Justin Glavis-Bloom, Payal Modi, Sabiha Nasrin, Soham Rege, Chieh Chu, Christopher H. Schmid, Nur Alam
Software Mentions: 1
Published: over 9 years ago

10.1172/jci.insight.124465

Granzyme A–producing T helper cells are critical for acute graft-versus-host disease
Cited by: 8
Author(s): Sungtae Park, Brad Griesenauer, Hua Jiang, Djamilatou Adom, Pegah Mehrpouya-Bahrami, Srishti Chakravorty, Majid Kazemian, Tanbeena Imam, Rajneesh Srivastava, Tristan Hayes, Julián Pardo, Sarath Chandra Janga, Sophie Paczesny, Mark H. Kaplan, Matthew R. Olson
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.ppat.1006422

Infection-adapted emergency hematopoiesis promotes visceral leishmaniasis
Cited by: 61
Author(s): Belma Melda Abidin, Akil Hammami, Simona Stäger, Krista M. Heinonen
Software Mentions: 1
Published: over 7 years ago

10.1073/pnas.2010243118

<i>Arabidopsis</i> cell wall composition determines disease resistance specificity and fitness
Cited by: 78
Author(s): Antonio Molina, Eva Miedes, Laura Bacete, J. Tinguaro Rodríguez, Hugo Mélida, Nicolás Denancé, Andrea Sánchez‐Vallet, Marie‐Pierre Rivière, Gemma López, Amandine Freydier, Xavier Barlet, Sivakumar Pattathil, Michael G. Hahn, Deborah Goffner
Software Mentions: 1
Published: almost 4 years ago

10.1136/rmdopen-2019-001163

Increased primary care use for musculoskeletal symptoms, infections and comorbidities in the years before the diagnosis of inflammatory arthritis
Cited by: 4
Author(s): M. van Beers-Tas, Markus M J Nielen, Jos W. R. Twisk, Joke C. Korevaar, Dirkjan van Schaardenburg
Software Mentions: 1
Published: over 4 years ago

10.1186/s13049-021-00944-9

CPR with restricted patient access using alternative rescuer positions: a randomised cross-over manikin study simulating the CPR scenario after avalanche burial
Cited by: 4
Author(s): Bernd Wallner, Luca Moroder, Hannah Salchner, Peter Mair, Stefanie Wallner, Gabriel Putzer, Giacomo Strapazzon, Markus Falk, Hermann Brugger
Software Mentions: 1
Published: about 3 years ago

10.1038/s41597-019-0318-9

The odonate phenotypic database, a new open data resource for comparative studies of an old insect order
Cited by: 15
Author(s): John Waller, Beatriz Willink, Maximilian Tschol, Erik I. Svensson
Software Mentions: 1
Published: almost 5 years ago

10.1038/srep10804

In silico identification of AMPylating enzymes and study of their divergent evolution
Cited by: 33
Author(s): Shradha Khater, Debasisa Mohanty
Software Mentions: 1
Published: over 9 years ago

10.1038/srep18147

A Large-scale Survey of CRF55_01B from Men-Who-Have-Sex-with-Men in China: implying the Evolutionary History and Public Health Impact
Cited by: 43
Author(s): Xiaoxu Han, Yutaka Takebe, Weiqing Zhang, Minghui An, Bin Zhao, Qinghai Hu, Junjie Xu, Hao Wu, Jianjun Wu, Lin Lü, Xi Chen, Shu Liang, Zhe Wang, Hongjing Yan, Jihua Fu, Weiping Cai, Minghua Zhuang, Christina Liao
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep30656

Hepatic immunophenotyping for streptozotocin-induced hyperglycemia in mice
Cited by: 14
Author(s): Young‐Sun Lee, Hyuk Soo Eun, So Yeon Kim, Jong Min Jeong, Wonhyo Seo, Jin Seok Byun, Won Il Jeong, Hyon‐Seung Yi
Software Mentions: 1
Published: over 8 years ago

10.1038/srep30917

Polyphenol-rich strawberry extract (PRSE) shows in vitro and in vivo biological activity against invasive breast cancer cells
Cited by: 72
Author(s): Stefano Amatori, Luca Mazzoni, José M. Álvarez-Suarez, Francesca Giampieri, Massimiliano Gasparrini, Tamara Y. Forbes-Hernández, Sadia Afrin, Alfredo Errico Provenzano, Giuseppe Persico, Bruno Mezzetti, Augusto Amici, Mirco Fanelli, Maurizio Battino
Software Mentions: 1
Published: over 8 years ago

10.1038/srep36704

The avian-specific small heat shock protein HSP25 is a constitutive protector against environmental stresses during blastoderm dormancy
Cited by: 13
Author(s): Young Sun Hwang, Meehyun Ko, Young Min Kim, Young Hyun Park, Tamao Ono, Jae Yong Han
Software Mentions: 1
Published: about 8 years ago

10.1038/s41598-017-04476-0

Identification of introns harboring functional sequence elements through positional conservation
Cited by: 17
Author(s): Michal Chorev, Alan Joseph Bekker, Jacob Goldberger, Liran Carmel
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-018-34885-8

Structural effects and lymphocyte activation properties of self-assembled polysaccharide nanogels for effective antigen delivery
Cited by: 12
Author(s): Risako Miura, Yoshiro Tahara, Shin‐ichi Sawada, Yoshihiro Sasaki, Kazunari Akiyoshi
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34954-y

Analysis of the Genome and Metabolome of Marine Myxobacteria Reveals High Potential for Biosynthesis of Novel Specialized Metabolites
Cited by: 38
Author(s): Jamshid Amiri Moghaddam, Max Crüsemann, Mohammad Alanjary, Henrik Harms, Antonio Dávila-Céspedes, Jochen Blom, Anja Poehlein, Nadine Ziemert, Gabriele M. König, Till F. Schäberle
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-53069-6

Mycobacterium tuberculosis CysA2 is a dual sulfurtransferase with activity against thiosulfate and 3-mercaptopyruvate and interacts with mammalian cells
Cited by: 9
Author(s): A.N. Meza, C. C. N. Cambui, Ana Carolina Ramos Moreno, Melissa Regina Fessel, Andrea Balan
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-020-57783-4

Alterations in the innate immune system due to exhausting exercise in intensively trained rats
Cited by: 20
Author(s): Sheila Estruel-Amades, Mariona Camps-Bossacoma, Malén Massot-Cladera, Francisco J. Pérez-Cano, Cristina Castellote
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60679-y

Dietary prebiotics alter novel microbial dependent fecal metabolites that improve sleep
Cited by: 39
Author(s): Robert S. Thompson, Fernando Vargas, Pieter C. Dorrestein, Maciej Chichlowski, Brian M. Berg, Monika Fleshner
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-61024-z

The association between breastmilk oligosaccharides and faecal microbiota in healthy breastfed infants at two, six, and twelve weeks of age
Cited by: 57
Author(s): Klaudyna Borewicz, Fangjie Gu, Edoardo Saccenti, Christine Hechler, Roseriet Beijers, Carolina de Weerth, Sander S. van Leeuwen, Henk A. Schols, Hauke Smidt
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-62610-x

Taxogenomic assessment and genomic characterisation of Weissella cibaria strain 92 able to metabolise oligosaccharides derived from dietary fibres
Cited by: 14
Author(s): Anna Månberger, Phebe Verbrugghe, Elísabet Eik Guðmundsdóttir, Sara Santesson, Anne Nilsson, Guðmundur Ó. Hreggviðsson, Javier A. Linares-Pastén, Eva Nordberg Karlsson
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-84916-0

STAT3 governs the HIF-1α response in IL-15 primed human NK cells
Cited by: 6
Author(s): Anna Coulibaly, Sonia Y. Velásquez, Nina Kassner, Jutta Schulte, Maria Vittoria Barbarossa, Holger A. Lindner
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-92435-1

Genetic diversity and molecular evolution of human respiratory syncytial virus A and B
Cited by: 22
Author(s): Jie-mei Yu, Yuan-Hui Fu, Peng Xu, Yan-Peng Zheng, Jin‐Sheng He
Software Mentions: 1
Published: over 3 years ago

10.3390/s8117012

Mesoscale Near-Surface Wind Speed Variability Mapping with Synthetic Aperture Radar
Cited by: 10
Author(s): George S. Young, Todd D. Sikora, Nathaniel S. Winstead
Software Mentions: 1
Published: about 16 years ago

10.3390/s20030887

A New Edge Patch with Rotation Invariance for Object Detection and Pose Estimation
Cited by: 5
Author(s): Xunwei Tong, Ruifeng Li, Lianzheng Ge, Lina Zhao, Wang Ke
Software Mentions: 1
Published: almost 5 years ago

10.3390/s20061614

A Flexible Autonomous Robotic Observatory Infrastructure for Bentho-Pelagic Monitoring
Cited by: 15
Author(s): Jacopo Aguzzi, Jan Albiez, Sascha Flögel, Olav Rune Godø, Endre Grimsbø, Simone Marini, Olaf Pfannkuche, E. A. Rodríguez, Laurenz Thomsen, Terje Torkelsen, Javier Valencia, Vanesa López-Vázquez, Henning Wehde, Guosong Zhang
Software Mentions: 1
Published: over 4 years ago

10.3390/s21041488

A Secure and Lightweight Authentication Protocol for IoT-Based Smart Homes
Cited by: 41
Author(s): Jihyeon Oh, SungJin Yu, Joonyoung Lee, Seunghwan Son, Myeonghyun Kim, Young Ho Park
Software Mentions: 1
Published: over 3 years ago

10.3390/s21051894

Unsupervised Trademark Retrieval Method Based on Attention Mechanism
Cited by: 5
Author(s): Jiangzhong Cao, Yunfei Huang, Qingyun Dai, Wing‐Kuen Ling
Software Mentions: 1
Published: over 3 years ago

10.4056/sigs.1072907

Complete genome sequence of Ignisphaera aggregans type strain (AQ1.S1T)
Cited by: 16
Author(s): Markus Göker, Brittany Held, Alla Lapidus, Matt Nolan, Stefan Spring, Montri Yasawong, Susan Lucas, Tijana Glavina del Rio, Hope Tice, Jan‐Fang Cheng, Lynne Goodwin, Roxanne Tapia, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen, Krishna Palaniappan, Evelyne Brambilla, Miriam Land, Loren Hauser, Yun Juan Chang, Cynthia D. Jeffries, Thomas Brettin, John C. Detter, Cliff Han, Manfred Rohde, Johannes Sikorski, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans Peter Klenk
Software Mentions: 1
Published: over 14 years ago

10.4056/sigs.2144922

Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and Rainey, 2010.
Cited by: 47
Author(s): Hans‐Peter Klenk, Alla Lapidus, Olga Chertkov, Alex Copeland, Tijana Glavina del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan‐Fang Cheng, Cliff Han, David Bruce, Lynne Goodwin, Sam Pitluck, Amrita Pati, Natalia Ivanova, Konstantinos Mavromatis, Chris Daum, Amy Chen, Krishna Palaniappan, Yen‐Hsiang Chang, Miriam Land, Loren Hauser, Cynthia D. Jeffries, John C. Detter, Manfred Rohde, Birte Abt, Rüdiger Pukall, Markus Göker, James Bristow, Victor Markowitz, Philip Hugenholtz, Jonathan A. Eisen
Software Mentions: 1
Published: about 13 years ago

10.1007/s00520-019-05018-2

Guideline adherence in bone-targeted treatment of cancer patients with bone metastases in Germany
Cited by: 13
Author(s): Hartmut Link, Ingo J. Diel, C. Ohlmann, L Holtmann, Markus Kerkmann, Associations Supportive Care in Oncology
Software Mentions: 1
Published: over 5 years ago

10.7150/thno.34429

Effective chemoimmunotherapy by co-delivery of doxorubicin and immune adjuvants in biodegradable nanoparticles
Cited by: 45
Author(s): Candido G Da Silva, Marcel Camps, Tracy Li, Luana Zerrillo, Clemens W.G.M. Löwik, Ferry Ossendorp, Luis J. Cruz
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13063-018-2685-5

The effectiveness of a stratified care model for non-specific low back pain in Danish primary care compared to current practice: study protocol of a randomised controlled trial
Cited by: 4
Author(s): Lars Morsø, Berit Schiøttz‐Christensen, Jens Søndergaard, Nils Bo de Vos Andersen, Flemming Pedersen, Kim Rose Olsen, Morten Sall Jensen, Jonathan Hill, David Høyrup Christiansen
Software Mentions: 1
Published: over 6 years ago

10.1186/2041-2223-4-6

Where is the game? Wild meat products authentication in South Africa: a case study
Cited by: 32
Author(s): María Eugenia D’Amato, Evguenia Alechine, Kevin Wesley Cloete, Sean Davison, Daniel Corach
Software Mentions: 1
Published: over 11 years ago

10.3390/ijerph18168402

Training Benefits and Injury Risks of Standing Yoga Applied in Musculoskeletal Problems: Lower Limb Biomechanical Analysis
Cited by: 4
Author(s): Aimin Liu, I-Hua Chu, Hong‐Ru Lin, Jing-Min Liang, Hsiu-Tao Hsu, Wen-Lan Wu
Software Mentions: 1
Published: over 3 years ago

10.1673/031.008.2901

Ovicidal Activity of Organophosphate, Oxadiazine, Neonicotinoid and Insect Growth Regulator Chemistries on Northern Strain Plum Curculio,<i>Conotrachelus nenuphar</i>
Cited by: 25
Author(s): Eric Hoffmann, Samantha M. Middleton, John C. Wise
Software Mentions: 1
Published: over 16 years ago

10.3390/ijms221910761

Synergistic Effects of Venetoclax and Daratumumab on Antibody-Dependent Cell-Mediated Natural Killer Cytotoxicity in Multiple Myeloma
Cited by: 6
Author(s): Ayano Nakamura, Susumu Suzuki, Jo Kanasugi, Masayuki Ejiri, Ichiro Hanamura, Ryuzo Ueda, Masao Seto, Akiyoshi Takami
Software Mentions: 1
Published: about 3 years ago

10.2196/21275

Effects of Web-Based Social Connectedness on Older Adults’ Depressive Symptoms: A Two-Wave Cross-Lagged Panel Study
Cited by: 13
Author(s): Juwon Hwang, Catalina L. Toma, Junhan Chen, Dhavan V. Shah, David H. Gustafson, Marie‐Louise Mares
Software Mentions: 1
Published: almost 4 years ago

10.1186/1742-2094-9-245

Dendritic cell CNS recruitment correlates with disease severity in EAE via CCL2 chemotaxis at the blood–brain barrier through paracellular transmigration and ERK activation
Cited by: 81
Author(s): Divya Sagar, Anne Lamontagne, Catherine A. Foss, Zafar K. Khan, Martin G. Pomper
Software Mentions: 1
Published: about 12 years ago

10.1186/s12974-014-0145-z

Dynamics of major histocompatibility complex class II-positive cells in the postischemic brain - influence of levodopa treatment
Cited by: 16
Author(s): Enida Kuric, Karsten Ruscher
Software Mentions: 1
Published: about 10 years ago

10.1155/2015/623431

A Copy Number Variant on Chromosome 20q13.3 Implicated in Thinness and Severe Obesity
Cited by: 5
Author(s): Sandra J. Hasstedt, Yuanpei Xin, Rong Mao, Tracey Lewis, Ted D. Adams, Steven C. Hunt
Software Mentions: 1
Published: almost 10 years ago

10.3390/jpm11010014

A Conformation Variant of p53 Combined with Machine Learning Identifies Alzheimer Disease in Preclinical and Prodromal Stages
Cited by: 18
Author(s): Giulia Abate, Marika Vezzoli, Letizia Polito, Antonio Guaita, Diego Albani, Moira Marizzoni, Emirena Garrafa, Alessandra Marengoni, Gianluigi Forloni, Giovanni B. Frisoni, Jeffrey L. Cummings, Maurizio Memo, Daniela Uberti
Software Mentions: 1
Published: almost 4 years ago

10.3390/jpm11030227

Predictive Biomarkers of COVID-19 Severity in SARS-CoV-2 Infected Patients with Obesity and Metabolic Syndrome
Cited by: 5
Author(s): Carles Perpiñán, Laia Bertran, Ximena Terra, Carmen Aguilar, Miguel López‐Dupla, Ajla Alibalic, David Riesco, Javier Camaron, Francesco Perrone, Anna Rull, Laia Reverté, Elena Yeregui, Anna Martí, Francesc Vidal, Teresa Auguet
Software Mentions: 1
Published: over 3 years ago

10.3390/jpm11080779

Effects of the Autophagy-Inhibiting Agent Chloroquine on Acute Myeloid Leukemia Cells; Characterization of Patient Heterogeneity
Cited by: 9
Author(s): Ida Sofie Grønningsæter, Håkon Reikvam, Elise Aasebø, Sushma Bartaula-Brevik, Maria Hernandez-Valladares, Frode Selheim, Frode S. Berven, Tor Henrik Anderson Tvedt, Øystein Bruserud, Kimberley Joanne Hatfield
Software Mentions: 1
Published: over 3 years ago

10.1098/rsif.2016.0828

Biomechanical properties of wheat grains: the implications on milling
Cited by: 24
Author(s): James E. Hourston, Michael Ignatz, Martin Reith, Gerhard Leubner‐Metzger, Tina Steinbrecher
Software Mentions: 1
Published: almost 8 years ago

10.2174/1874285801812010181

Characterization of Actinobacterial Communities from Arauca River Sediments (Colombia) Reveals Antimicrobial Potential Presented in Low Abundant Isolates
Cited by: 8
Author(s): Carolina Arango, Alejandro Acosta-González, Claudia Marcela Parra-Giraldo, Zilpa Adriana Sánchez-Quitian, Russell G. Kerr, Luis Eduardo Díaz
Software Mentions: 1
Published: over 6 years ago

10.1155/2012/346765

On the Meaning of Affinity Limits in B-Cell Epitope Prediction for Antipeptide Antibody-Mediated Immunity
Cited by: 12
Author(s): Salvador Eugenio C. Caoili
Software Mentions: 1
Published: about 12 years ago

10.1186/1479-5876-11-103

A Lectin-EGF antibody promotes regulatory T cells and attenuates nephrotoxic nephritis via DC-SIGN on dendritic cells
Cited by: 8
Author(s): Ming Cai, Jing Wu, Chaoming Mao, Jianmin Ren, Pu Li, Li Xiao, Jiuchang Zhong, Xu Che, Tong Zhou
Software Mentions: 1
Published: over 11 years ago

10.3390/ani11071845

Genomic Epidemiology of Shiga Toxin-Producing Escherichia coli Isolated from the Livestock-Food-Human Interface in South America
Cited by: 11
Author(s): Nicolás Galarce, Francisco Javier Sierro Sánchez, Beatriz Escobar, Lisette Lapierre, Javiera Cornejo, Raúl Alegría-Morán, Víctor Neira, Vı́ctor Martı́nez, Timothy J. Johnson, Danny Fuentes‐Castillo, Elder Sano, Nilton Lincopán
Software Mentions: 1
Published: over 3 years ago

10.1186/s12941-016-0175-8

A prospective observational cohort study in primary care practices to identify factors associated with treatment failure in Staphylococcus aureus skin and soft tissue infections
Cited by: 9
Author(s): Grace C. Lee, Ronald G. Hall, Natalie K. Boyd, Steven D. Dallas, Liem C. Du, Lucina B. Treviño, Sylvia Treviño, Chad Retzloff, Kenneth A. Lawson, James P. Wilson, Randall J. Olsen, Yufeng Wang, Christopher R. Frei
Software Mentions: 1
Published: almost 8 years ago

10.3390/antibiotics9100672

Is Early Monitoring Better? Impact of Early Vancomycin Exposure on Treatment Outcomes and Nephrotoxicity in Patients with Methicillin-Resistant Staphylococcus aureus Infections
Cited by: 10
Author(s): Thanawat Chattaweelarp, Dhitiwat Changpradub, Baralee Punyawudho, Sudaluck Thunyaharn, Wichai Santimaleeworagun
Software Mentions: 1
Published: about 4 years ago

10.3390/antiox9121192

Gallic Acid-Laminarin Conjugate Is a Better Antioxidant than Sulfated or Carboxylated Laminarin
Cited by: 17
Author(s): Marília Medeiros Fernandes-Negreiros, Lucas Alighieri Neves Costa Batista, Rony Lucas Silva Viana, Diego Araújo Sabry, Almino Afonso Oliveira Paiva, Weslley de Souza Paiva, Raynara Iusk Araújo Machado, Francimar Lopes de Sousa, Daniel de Lima Pontes, Jussier de Oliveira Vitoriano, Clodomiro Alves, Guilherme L. Sassaki, Hugo Alexandre Oliveira Rocha
Software Mentions: 1
Published: almost 4 years ago

10.1093/aobpla/plx045

Quantification of monoterpene emission sources of a conifer species in response to experimental drought
Cited by: 15
Author(s): Marvin Lüpke, Michael Leuchner, R. Steinbrecher, Annette Menzel
Software Mentions: 1
Published: about 7 years ago

10.1186/s13075-021-02510-1

Identification of neutrophil β2-integrin LFA-1 as a potential mechanistic biomarker in ANCA-associated vasculitis via microarray and validation analyses
Cited by: 7
Author(s): Kotaro Matsumoto, Takahiko Kurasawa, Keiko Yoshimoto, Katsuya Suzuki, Tsutomu Takeuchi
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-12-51

Tree pruner: An efficient tool for selecting data from a biased genetic database
Cited by: 6
Author(s): Mohan Krishnamoorthy, Pragneshkumar Patel, Mira Dimitrijevic, Jonathan Dietrich, Margaret Green, Catherine A. Macken
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2105-7-252

Phylophenetic properties of metabolic pathway topologies as revealed by global analysis
Cited by: 29
Author(s): Yong Zhang, Shaojuan Li, Geir Skogerbø, Zhihua Zhang, Xiaopeng Zhu, Zefeng Zhang, Shiwei Sun, Hongchao Lu, Baochen Shi, Runsheng Chen
Software Mentions: 1
Published: over 18 years ago

10.1186/1471-2105-12-S8-S10

Simple and efficient machine learning frameworks for identifying protein-protein interaction relevant articles and experimental methods used to study the interactions
Cited by: 11
Author(s): Shashank Agarwal, Feifan Liu, Hong Yu
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-7-S2-S23

GOFFA: Gene Ontology For Functional Analysis – A FDA Gene Ontology Tool for Analysis of Genomic and Proteomic Data
Cited by: 55
Author(s): Hongmei Sun, Hong Fang, Tao Chen, Roger Perkins, Weida Tong
Software Mentions: 1
Published: about 18 years ago

10.1186/s12859-020-03749-2

ConCysFind: a pipeline tool to predict conserved amino acids of protein sequences across the plant kingdom
Cited by: 2
Author(s): Marten Moore, Corinna Wesemann, Nikolaj Gossmann, Arne Sahm, Jan Walters Kruger, Alexander Sczyrba, Karl‐Josef Dietz
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2105-11-379

MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heuristics
Cited by: 87
Author(s): Raphaël Helaers, Michel C. Milinkovitch
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2105-9-268

Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures
Cited by: 27
Author(s): Meng Piao Tan, Erin N. Smith, James R. Broach, Christodoulos A. Floudas
Software Mentions: 1
Published: over 16 years ago

10.1186/s12862-019-1380-9

Multiple radiations of spiny mice (Rodentia: Acomys) in dry open habitats of Afro-Arabia: evidence from a multi-locus phylogeny
Cited by: 26
Author(s): Tatiana Aghová, Klára Palupčíková, Radim Šumbera, Daniel Frynta, Leonid A. Lavrenchenko, Yonas Meheretu, Jovana Sádlová, Jan Votýpka, Judith Syombua Mbau, David Modrý, Josef Bryja
Software Mentions: 1
Published: over 5 years ago

10.1186/s12862-019-1426-z

Phylogeography and ecological niche modeling unravel the evolutionary history of the Yarkand hare, Lepus yarkandensis (Mammalia: Leporidae), through the Quaternary
Cited by: 4
Author(s): Brawin Kumar, Jilong Cheng, Deyan Ge, Lin Xia, Qisen Yang
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2148-7-S1-S7

Phylogenetic signal and functional categories in Proteobacteria genomes
Cited by: 14
Author(s): Iñaki Comas, Andrés Moya, Fernando González‐Candelas
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2148-9-197

Cyanobacterial contribution to the genomes of the plastid-lacking protists
Cited by: 43
Author(s): Shinichiro Maruyama, Motomichi Matsuzaki, Kazuharu Misawa, Hisayoshi Nozaki
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2156-15-77

Taiwan Y-chromosomal DNA variation and its relationship with Island Southeast Asia
Cited by: 45
Author(s): J. Tréjaut, Estella S. Poloni, Jiin Cherng Yen, Yi Lai, Jun‐Hun Loo, Chien‐Liang Lee, Chunlin He, Min Lin
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2156-11-78

A haplotype inference algorithm for trios based on deterministic sampling
Cited by: 6
Author(s): Alexandros Iliadis, John Watkinson, Dimitris Anastassiou, Xiaodong Wang
Software Mentions: 1
Published: about 14 years ago

10.1186/s12864-015-1386-7

Local hopping mobile DNA implicated in pseudogene formation and reductive evolution in an obligate cyanobacteria-plant symbiosis
Cited by: 17
Author(s): Theoden Vigil-Stenman, Jenny Larsson, Johan A. A. Nylander, Birgitta Bergman
Software Mentions: 1
Published: over 9 years ago

10.1186/s12877-020-01540-9

Value of appendicular skeletal muscle mass to total body fat ratio in predicting obesity in elderly people: a 2.2-year longitudinal study
Cited by: 1
Author(s): Yujie Zhang, Shihui Fu, Jingxin Wang, Xinyang Zhao, Yao Yao, Xiaoying Li
Software Mentions: 1
Published: over 4 years ago

10.1186/1472-6963-8-103

Treatment needs and acknowledgement of illness – importance for satisfaction with psychiatric inpatient treatment
Cited by: 22
Author(s): Knut W Soergaard, Mary Nivison, Vidje Hansen, Terje Oeiesvold
Software Mentions: 1
Published: over 16 years ago

10.1186/s12865-020-00382-9

Decreased glycolysis induced dysfunction of NK cells in Henoch-Schonlein purpura patients
Cited by: 5
Author(s): Wenjia Chai, Xiaolin Wang, Wei Wang, Hui Wang, Wenjun Mou, Jingang Gui
Software Mentions: 1
Published: about 4 years ago

10.1186/s12879-016-1839-x

Classification and Regression Tree (CART) analysis to predict influenza in primary care patients
Cited by: 55
Author(s): Richard K. Zimmerman, Goundappa K. Balasubramani, Mary Patricia Nowalk, Heather Eng, Leonard Urbanski, Michael L. Jackson, Lisa A. Jackson, Huong Q. McLean, Edward A. Belongia, Arnold S. Monto, Ryan E. Malosh, Manjusha Gaglani, Lydia Clipper, Brendan Flannery, Stephen R. Wisniewski
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2350-7-24

Cell type-specific over-expression of chromosome 21 genes in fibroblasts and fetal hearts with trisomy 21
Cited by: 68
Author(s): Chi Ming Li, Meirong Guo, Martha Salas, Nicole Schupf, Wayne Silverman, Warren B. Zigman, Sameera Husain, Dorothy Warburton, Harshwardhan M. Thaker, Benjamin Tycko
Software Mentions: 1
Published: over 18 years ago

10.1186/s12920-018-0416-0

Bi-stream CNN Down Syndrome screening model based on genotyping array
Cited by: 2
Author(s): Bing Feng, William Hoskins, Yan Zhang, Zibo Meng, David C. Samuels, Jiandong Wang, Ruofan Xia, Chao Liu, Jijun Tang, Yan Guo
Software Mentions: 1
Published: about 6 years ago

10.1186/1472-6947-7-23

Clinical decision modeling system
Cited by: 12
Author(s): Haiwen Shi, James Lyons‐Weiler
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2431-14-207

Diagnosing serious infections in acutely ill children in ambulatory care (ERNIE 2 study protocol, part A): diagnostic accuracy of a clinical decision tree and added value of a point-of-care C-reactive protein test and oxygen saturation
Cited by: 10
Author(s): Jan Y Verbakel, Marieke Lemiengre, Tine De Burghgraeve, An De Sutter, Dominique Bullens, Bert Aertgeerts, Frank Buntinx
Software Mentions: 1
Published: about 10 years ago

10.1186/1753-6561-5-S7-O53

Highly regulated but can’t be certified as sustainable. Responsible use principles are bridging the gap for biotech trees
Cited by: 0
Author(s): Adam Costanza
Software Mentions: 1
Published: about 13 years ago

10.1186/s13104-017-2711-9

Bioprospecting saline gradient of a Wildlife Sanctuary for bacterial diversity and antimicrobial activities
Cited by: 3
Author(s): Mara DeLuca, Riley King, Mustafa Morsy
Software Mentions: 1
Published: over 7 years ago

10.1186/1756-0500-7-866

A-WINGS: an integrated genome database for Pleurocybella porrigens (Angel’s wing oyster mushroom, Sugihiratake)
Cited by: 6
Author(s): Nobuto Yamamoto, Tomohiro Suzuki, Mariko Kobayashi, Hideo Dohra, Yohei Sasaki, Hirofumi Hirai, Koji Yokoyama, Hirokazu Kawagishi, Kentarô Yano
Software Mentions: 1
Published: almost 10 years ago