Projects: pypi: TopHat
https://packages.ecosyste.ms/registries/pypi.org/packages/TopHat
TopHat Platform
3 versions
Latest release: about 14 years ago
9 downloads last month
Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (90)
Papers Mentioning TopHat 5,017
10.1371/journal.pgen.1004701
Ethylene-Induced Inhibition of Root Growth Requires Abscisic Acid Function in Rice (Oryza sativa L.) SeedlingsCited by: 92
Author(s): Biao Ma, Cui‐Cui Yin, Shiying He, Xiang Lü, Wan–Ke Zhang, Tiegang Lu, Shouyi Chen, Jinsong Zhang
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pgen.1003779
A Pre-mRNA-Splicing Factor Is Required for RNA-Directed DNA Methylation in ArabidopsisCited by: 55
Author(s): Chao‐Feng Huang, Daisuke Miki, Kai Tang, Hao-Ran Zhou, Zhimin Zheng, Wei Chen, Zeyang Ma, Lan Yang, Heng Zhang, Renyi Liu, Xin‐Jian He, Jian‐Kang Zhu
Software Mentions: 1
Published: about 13 years ago
10.1038/cddis.2016.343
AP1 transcription factors are required to maintain the peripheral taste systemCited by: 8
Author(s): Jayasha Shandilya, Yankun Gao, Tapan K. Nayak, Stefan G. E. Roberts, Kathryn F. Medler
Software Mentions: 1
Published: almost 10 years ago
10.1038/s41388-018-0501-z
A reciprocal feedback between the PDZ binding kinase and androgen receptor drives prostate cancerCited by: 14
Author(s): Anne Y. Warren, Charles E. Massie, Kate Watt, Katarina Luko, Folake Orafidiya, Luke A. Selth, Hisham Mohammed, Brinder S Chohan, Suraj Menon, Ajoeb Baridi, Wanfeng Zhao, Carles Escriu, Thanakorn Pungsrinont, Clive S. D’Santos, Xiaoping Yang, Chris Taylor, Arham Qureshi, Vincent Zecchini, Greg L. Shaw, Scott M. Dehm, Ian G. Mills, Jason S. Carroll, Wayne D. Tilley, Iain J. McEwan, Aria Baniahmad, David E. Neal, Mohammad Asim
Software Mentions: 1
Published: about 8 years ago
10.1038/cddis.2017.179
BASP1 interacts with oestrogen receptor α and modifies the tamoxifen responseCited by: 21
Author(s): Lindsey A. Marsh, Samantha Carrera, Jayasha Shandilya, Kate J Heesom, Andrew D. Davidson, Kathryn F. Medler, Stefan G. E. Roberts
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pgen.1006026
Two Components of the RNA-Directed DNA Methylation Pathway Associate with MORC6 and Silence Loci Targeted by MORC6 in ArabidopsisCited by: 40
Author(s): Zhang-Wei Liu, Jin‐Xing Zhou, Huanwei Huang, Yongqiang Li, Chen Shao, Lin Li, Tao Cai, She Chen, Xin‐Jian He
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pgen.1005277
Canine Spontaneous Head and Neck Squamous Cell Carcinomas Represent Their Human Counterparts at the Molecular LevelCited by: 33
Author(s): Liu D, Huan Xiong, Angela E. Ellis, Nicole C. Northrup, Kevin K. Dobbin, Dong M. Shin, Shaying Zhao
Software Mentions: 1
Published: over 11 years ago
10.1186/s13024-020-00372-w
NLRP12 collaborates with NLRP3 and NLRC4 to promote pyroptosis inducing ganglion cell death of acute glaucomaCited by: 67
Author(s): Hui Chen, Yang Deng, Xiaoliang Gan, Yonghao Li, Wenyong Huang, Lin Lü, Lai Wei, Lishi Su, Jiawen Luo, Bin Zou, Yongfeng Hong, Yihai Cao, Yizhi Liu, Wei Chi
Software Mentions: 1
Published: over 6 years ago
10.1186/s13059-017-1296-x
Sparse conserved under-methylated CpGs are associated with high-order chromatin structureCited by: 13
Author(s): Xueqiu Lin, Jianzhong Su, Kaifu Chen, Blanca Rodriguez, Wei Li
Software Mentions: 1
Published: about 9 years ago
10.1007/s12035-020-01905-6
Dyslexia Candidate Gene and Ciliary Gene Expression Dynamics During Human Neuronal DifferentiationCited by: 9
Author(s): Andrea Bieder, Masahito Yoshihara, Shintaro Katayama, Kaarel Krjutškov, Anna Falk, Juha Kere, Isabel Tapia-Páez
Software Mentions: 1
Published: over 6 years ago
10.1186/s13059-017-1306-z
DNA epigenome editing using CRISPR-Cas SunTag-directed DNMT3ACited by: 148
Author(s): Yung‐Hsin Huang, Jianzhong Su, Yong Lei, Lorenzo Brunetti, Michael C. Gundry, Xiaotian Zhang, Mira Jeong, Wei Li, Margaret A. Goodell
Software Mentions: 1
Published: about 9 years ago
10.1007/s12035-016-0270-z
Downregulation of the Long Non-Coding RNA Meg3 Promotes Angiogenesis After Ischemic Brain Injury by Activating Notch SignalingCited by: 115
Author(s): Juan Liu, Qing Li, Kunshan Zhang, Bin Hu, Xiamu Niu, Shumin Zhou, Siguang Li, Yuan Luo, Yang Wang, Zhifeng Deng
Software Mentions: 1
Published: almost 10 years ago
10.1007/s12035-020-01899-1
A Comprehensive Transcriptome Analysis Identifies FXN and BDNF as Novel Targets of miRNAs in Friedreich’s Ataxia PatientsCited by: 8
Author(s): Julia O. Misiorek, Anna M. Schreiber, Martyna Olga Urbanek-Trzeciak, Magdalena Jazurek-Ciesiołka, Lauren Hauser, David R. Lynch, Marek Napierala, Марек Напиерала
Software Mentions: 1
Published: over 6 years ago
10.1186/s13059-017-1344-6
The fitness cost of mis-splicing is the main determinant of alternative splicing patternsCited by: 66
Author(s): Baptiste Saudemont, Alexandra Popa, Joanna L. Parmley, Vincent Rocher, Corinne Blugeon, Anamaria Necşulea, Éric Meyer, Laurent Duret
Software Mentions: 1
Published: almost 9 years ago
10.3390/ijms18091872
Arid1b Haploinsufficiency Causes Abnormal Brain Gene Expression and Autism-Related Behaviors in MiceCited by: 52
Author(s): Mihiro Shibutani, Takuro Horii, Hirotaka Shoji, Sumiyo Morita, Masashi Kimura, Naomi Terawaki, Tsuyoshi Miyakawa, Izuho Hatada
Software Mentions: 1
Published: about 9 years ago
10.1002/cam4.2523
Cancer‐associated fibroblasts secrete Wnt2 to promote cancer progression in colorectal cancerCited by: 50
Author(s): Takafumi Aizawa, Hideaki Karasawa, Ryo Funayama, Matsuyuki Shirota, Takashi Suzuki, Shin Maeda, Hideyuki Suzuki, Akihiro Yamamura, Takeshi Naitoh, Keiko Nakayama, Michiaki Unno
Software Mentions: 1
Published: about 7 years ago