Projects: pypi: TopHat
https://packages.ecosyste.ms/registries/pypi.org/packages/TopHat
TopHat Platform
3 versions
Latest release: almost 14 years ago
9 downloads last month
Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (90)
Papers Mentioning TopHat 5,017
10.18632/oncotarget.23694
Transcriptome profiling identified differentially expressed genes and pathways associated with tamoxifen resistance in human breast cancerCited by: 21
Author(s): Xin Men, Ma Jun, Tong Wu, Junyi Pu, Shaojia Wen, Jianfeng Shen, Xun Wang, Yamin Wang, Chao Chen, Peng Dai
Software Mentions: 1
Published: almost 9 years ago
10.18632/oncotarget.23946
Competitive endogenous RNA networks: integrated analysis of non-coding RNA and mRNA expression profiles in infantile hemangiomaCited by: 10
Author(s): Jun Li, Qian Li, Ling Chen, Yanli Gao, Bei Zhou, Jingyun Li
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.24147
ERK inhibition represses gefitinib resistance in non-small cell lung cancer cellsCited by: 19
Author(s): Mengfan Qi, Ye Tian, Wang Li, Dan Li, Tian Zhao, Yuxin Yang, Qiwen Li, Sujun Chen, Yan Yang, Zhixiong Zhang, Liang Tang, Liu Z, Bo Su, Fĕi Li, Yonghong Feng, Fei Ke, Peng Zhang, Fan Zhang, Lei Zhang
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.24720
2’-Hydroxyflavanone effectively targets RLIP76-mediated drug transport and regulates critical signaling networks in breast cancerCited by: 19
Author(s): Lokesh Dalasanur Nagaprashantha, Jyotsana Singhal, Hongzhi Li, Charles Warden, Xueli Liu, David Horne, Yogesh C. Awasthi, Ravi Salgia, Sharad S. Singhal
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.25456
Loss-of-function mutations in Zn-finger DNA-binding domain of <i>HNF4A</i> cause aberrant transcriptional regulation in liver cancerCited by: 16
Author(s): Hiroaki Taniguchi, Akihiro Fujimoto, Hidetoshi Kono, Mayuko Furuta, Masashi Fujita, Hidewaki Nakagawa
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.25451
Region-specific alteration of histone modification by LSD1 inhibitor conjugated with pyrrole-imidazole polyamideCited by: 5
Author(s): Kokiladevi Alagarswamy, Ken‐ichi Shinohara, Shihori Takayanagi, Masaki Fukuyo, Atsushi Okabe, Bahityar Rahmutulla, Natsumi Yoda, Rui Qin, Naoki Shiga, Masahiro Sugiura, Hiroaki Sato, K Kita, Takayoshi Suzuki, Tetsuhiro Nemoto, Atsushi Kaneda
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.26177
Mutant TP53 modulates metastasis of triple negative breast cancer through adenosine A2b receptor signalingCited by: 12
Author(s): Eisuke Horigome, Michiru Fujieda, Tadashi Handa, Ayaka Katayama, Masashi Ito, Ami Ichihara, Daiki Tanaka, Navchaa Gombodorj, Shinji Yoshiyama, Arito Yamane, Keiichi Yamada, Jun Horiguchi, Kazuo Shinozuka, Tetsunari Oyama, Masahiko Nishiyama, Susumu Rokudai
Software Mentions: 1
Published: about 8 years ago
10.1113/jphysiol.2014.278994
Ionotropic GABA and glycine receptor subunit composition in human pluripotent stem cell‐derived excitatory cortical neuronesCited by: 14
Author(s): Owain T. James, Matthew R. Livesey, Jingdan Qiu, Owen Dando, Bilada Bilican, Ghazal Haghi, Rinku Rajan, Karen Burr, Giles E. Hardingham, Siddharthan Chandran, Peter C. Kind, David J. A. Wyllie
Software Mentions: 1
Published: about 12 years ago
10.1186/s40101-020-00242-w
NOD-like receptors mediate inflammatory lung injury during plateau hypoxia exposureCited by: 8
Author(s): Haiyan Wang, Xue Lin, Xiongming Pu
Software Mentions: 1
Published: almost 6 years ago
10.1093/jrr/rrz057
Reprogramming and differentiation-dependent transcriptional alteration of DNA damage response and apoptosis genes in human induced pluripotent stem cellsCited by: 13
Author(s): Mikio Shimada, Kaima Tsukada, Nozomi Kagawa, Yoshihisa Matsumoto
Software Mentions: 1
Published: almost 7 years ago
10.1098/rsob.170119
The requirement of Mettl3-promoted <i>MyoD</i> mRNA maintenance in proliferative myoblasts for skeletal muscle differentiationCited by: 66
Author(s): Kensuke Kudou, Tetsuro Komatsu, Jumpei Nogami, Kazuhira Maehara, Akihito Harada, Hiroshi Saeki, Eiji Oki, Yoshihiko Maehara, Yasuyuki Ohkawa
Software Mentions: 1
Published: about 9 years ago
10.1098/rsob.180029
Cultured cells and wing disc size of silkworm can be controlled by the Hippo pathwayCited by: 9
Author(s): Zi Liang, Yingjie Lu, Ying Qian, Liyuan Zhu, Sulan Kuang, Fei Chen, Yongjie Feng, Xiaolong Hu, Guangwen Cao, Renyu Xue, Chengliang Gong
Software Mentions: 1
Published: over 8 years ago
10.1186/s13023-016-0439-6
Complex translocation disrupting TCF4 and altering TCF4 isoform expression segregates as mild autosomal dominant intellectual disabilityCited by: 23
Author(s): Valerie V. Maduro, Barbara N. Pusey, Praveen F. Cherukuri, Paul Atkins, Christèle du Souich, Rosemarie Rupps, Marjolaine M. Limbos, David R. Adams, Samarth Bhatt, Patrice Eydoux, Amanda Links, Anna Lehman, May Christine V. Malicdan, Christopher E. Mason, Marie Morimoto, James C. Mullikin, Andrew Sear, Clara van Karnebeek, Paweł Stankiewicz, William A. Gahl, Camilo Toro, Cornelius F. Boerkoel
Software Mentions: 1
Published: over 10 years ago
10.1128/JVI.01335-20
Mapping the Human Herpesvirus 6B TranscriptomeCited by: 3
Author(s): Annie Gravel, Wes Sanders, Éric Fournier, Arnaud Droit, Nathaniel J. Moorman, Louis Flamand
Software Mentions: 1
Published: over 5 years ago
10.1186/s12967-018-1749-3
Biomarkers from circulating neutrophil transcriptomes have potential to detect unruptured intracranial aneurysmsCited by: 27
Author(s): Vincent M. Tutino, Kerry E. Poppenberg, Lü Li, Hussain Shallwani, Kaiyu Jiang, James N. Jarvis, Yijun Sun, Kenneth V. Snyder, Elad I. Levy, Adnan H. Siddiqui, John Kolega
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pgen.1006106
Dynamics of Chloroplast Translation during Chloroplast Differentiation in MaizeCited by: 91
Author(s): Prakitchai Chotewutmontri, Alice Barkan
Software Mentions: 1
Published: about 10 years ago