Projects: pypi: TopHat
https://packages.ecosyste.ms/registries/pypi.org/packages/TopHat
TopHat Platform
3 versions
Latest release: almost 14 years ago
9 downloads last month
Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (90)
Papers Mentioning TopHat 5,017
10.3389/fmicb.2020.00901
Temperature Dramatically Shapes Mosquito Gene Expression With Consequences for Mosquito–Zika Virus InteractionsCited by: 27
Author(s): Patrícia Rodrigues Ferreira, Blanka Tesla, Elvira Cynthia Alves Horácio, Laila Alves Nahum, Melinda A. Brindley, Tiago Antônio de Oliveira Mendes, Courtney C. Murdock
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.09991
Signaling cascades and the importance of moonlight in coral broadcast mass spawningCited by: 87
Author(s): Paulina Kaniewska, Shahar Alon, Sarit Karako-Lampert, Ove Hoegh‐Guldberg, Oren Levy
Software Mentions: 1
Published: almost 11 years ago
10.1186/1753-6561-9-S9-O8
Multi-omics approach for comparative studies of monoclonal antibody producing CHO cellsCited by: 4
Author(s): Camila A. Orellana, Esteban Marcellin, Trent Munro, Peter P Gary, Lars K. Nielsen
Software Mentions: 1
Published: almost 11 years ago
10.3389/fmicb.2018.01919
Transcriptomic Insights Into the Growth Phase- and Sugar-Associated Changes in the Exopolysaccharide Production of a High EPS-Producing Streptococcus thermophilus ASCC 1275Cited by: 27
Author(s): Aparna Padmanabhan, Ying Tong, Qinglong Wu, Jiangwen Zhang, Nagendra P. Shah
Software Mentions: 1
Published: about 8 years ago
10.7554/eLife.01201
The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturationCited by: 129
Author(s): Qin Li, Sika Zheng, A-Reum Han, Chia-Ho Lin, Peter Stoilov, Xiang‐Dong Fu, Douglas L. Black
Software Mentions: 1
Published: over 12 years ago
10.1038/s41598-019-45089-z
Divergent age-dependent peripheral immune transcriptomic profile following traumatic brain injuryCited by: 10
Author(s): Amanda Hazy, Lauren Bochicchio, Andrea Oliver, Eric Xie, Shuo Geng, Thomas Brickler, Hehuang Xie, Liwu Li, Irving C. Allen, Michelle H. Theus
Software Mentions: 1
Published: over 7 years ago
10.1186/s12870-019-2210-3
Nitric oxide- induced AtAO3 differentially regulates plant defense and drought tolerance in Arabidopsis thalianaCited by: 29
Author(s): Murtaza Khan, Qari Muhammad Imran, Muhammad Shahid, Bong-Gyu Mun, Sang-Uk Lee, Muhammad Aaqil Khan, Adil Hussain, In‐Jung Lee, Byung‐Wook Yun
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pcbi.1004821
Ups and Downs of Poised RNA Polymerase II in B-CellsCited by: 2
Author(s): Phuong Dao, Damian Wójtowicz, Stacy A. C. Nelson, David Levens, Teresa M. Przytycka
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-019-45600-6
Healthy adiposity and extended lifespan in obese mice fed a diet supplemented with a polyphenol-rich plant extractCited by: 24
Author(s): Virginie Aires, Jérôme Labbé, Valérie Deckert, Jean‐Paul Pais de Barros, Romain Boidot, Marc Haumont, Guillaume Maquart, Naïg Le Guern, David Masson, Emmanuelle Prost-Camus, Michel Prost, Laurent Lagrost
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.00499
Overcoming mutation-based resistance to antiandrogens with rational drug designCited by: 340
Author(s): Minna Balbas, Michael J. Evans, David J. Hosfield, John Wongvipat, Vivek Arora, Philip A. Watson, Yu Chen, Geoffrey L. Greene, Yang Shen, Charles L. Sawyers
Software Mentions: 1
Published: over 13 years ago
10.3389/fmicb.2016.01953
Localization and Transcriptional Responses of Chrysoporthe austroafricana in Eucalyptus grandis Identify Putative Pathogenicity FactorsCited by: 3
Author(s): Ronishree Mangwanda, Lizahn Zwart, Nicolaas Albertus Van der Merwe, Lucy N. Moleleki, David Kenneth Berger, Alexander Andrew Myburg, Sanushka Naidoo
Software Mentions: 1
Published: almost 10 years ago
10.3389/fmicb.2020.02037
VapC21 Toxin Contributes to Drug-Tolerance and Interacts With Non-cognate VapB32 Antitoxin in Mycobacterium tuberculosisCited by: 20
Author(s): Arun Sharma, Gopinath Chattopadhyay, Pankaj Chopra, Munmun Bhasin, Chandrani Thakur, Sakshi Agarwal, Shahbaz Ahmed, Nagasuma Chandra, Raghavan Varadarajan, Ramandeep Singh
Software Mentions: 1
Published: about 6 years ago
10.7554/eLife.05996
The Notch-mediated hyperplasia circuitry in Drosophila reveals a Src-JNK signaling axisCited by: 34
Author(s): Diana M. Ho, SK Pallavi, Spyros Artavanis‐Tsakonas
Software Mentions: 1
Published: about 11 years ago
10.1038/s41598-019-47003-z
The anti-aflatoxigenic mechanism of cinnamaldehyde in Aspergillus flavusCited by: 36
Author(s): Ping Wang, Longxue Ma, Jing Jin, Mao Zheng, Lin Pan, Yang Zhao, Xiulan Sun, Yang Liu, Fuguo Xing
Software Mentions: 1
Published: about 7 years ago
10.1186/s12870-020-02803-8
Genome-wide identification and characterization of NBS-encoding genes in Raphanus sativus L. and their roles related to Fusarium oxysporum resistanceCited by: 16
Author(s): Yinbo Ma, Sushil Satish Chhapekar, Lu Lu, Sangheon Oh, Sonam Singh, Chang Soo Kim, Seung‐Ho Kim, Gyung Ja Choi, Yong Pyo Lim, Su Ryun Choi
Software Mentions: 1
Published: over 5 years ago
10.1186/s12870-015-0435-3
Transcriptomic analysis of differentially expressed genes in an orange-pericarp mutant and wild type in pummelo (Citrus grandis)Cited by: 33
Author(s): Fei Guo, Huang Yu, Qiang Xu, Xiuxin Deng
Software Mentions: 1
Published: over 11 years ago