Projects: pypi: TopHat
https://packages.ecosyste.ms/registries/pypi.org/packages/TopHat
TopHat Platform
3 versions
Latest release: almost 14 years ago
9 downloads last month
Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (90)
Papers Mentioning TopHat 5,017
10.3390/plants8090302
Circular and Micro RNAs from Arabidopsis thaliana Flowers Are Simultaneously Isolated from AGO-IP LibrariesCited by: 15
Author(s): Érika Frydrych Capelari, Guilherme Cordenonsi da Fonseca, Frank Guzmán, Rogério Margis
Software Mentions: 1
Published: about 7 years ago
10.1186/s12864-020-07075-y
Transcriptome analysis of the hypothalamus and pituitary of turkey hens with low and high egg productionCited by: 7
Author(s): Kristen Brady, Hsiao‐Ching Liu, Julie A. Hicks, Julie A. Long, Tom E. Porter
Software Mentions: 1
Published: about 6 years ago
10.3389/fonc.2021.718731
Downregulation of miR-142a Contributes to the Enhanced Anti-Apoptotic Ability of Murine Chronic Myelogenous Leukemia CellsCited by: 2
Author(s): Zhiwei Chen, Yinyin Xie, Dan Liú, Ping Liu, Fĕi Li, Zhanglin Zhang, Mengmeng Zhang, Xiaolin Wang, Yuanliang Zhang, Xiao Jian Sun, Qiu-Hua Huang
Software Mentions: 1
Published: about 5 years ago
10.3390/plants9020204
Transcriptome and Phytochemical Analysis Reveals the Alteration of Plant Hormones, Characteristic Metabolites, and Related Gene Expression in Tea (Camellia sinensis L.) Leaves During WitheringCited by: 16
Author(s): Ping Xu, Hui Su, Sheng Zhao, Rong Jin, Haiyan Cheng, Anan Xu, Wanyi Lai, Yin X, Yuefei Wang
Software Mentions: 1
Published: over 6 years ago
10.3389/fonc.2021.680058
NF-E2-Related Factor 2 (Nrf2) Ameliorates Radiation-Induced Skin InjuryCited by: 6
Author(s): Jiao Xue, Chengbin Yu, Yiting Tang, Wei Mo, Zhicheng Tang, Weidong Sheng, Yang Jiao, Wei Zhu, Jianping Cao
Software Mentions: 1
Published: about 5 years ago
10.3390/plants8040101
Transcriptomic Analysis of Orange Fruit Treated with Pomegranate Peel Extract (PGE)Cited by: 19
Author(s): Imen Belgacem, Sonia Pangallo, Ahmed Abdelfattah, Flora V. Romeo, S. O. Cacciola, Maria Giulia Li Destri Nicosia, Gabriele Ballistreri, Leonardo Schena
Software Mentions: 1
Published: over 7 years ago
10.3390/plants9050596
Comparative Analysis of Root Transcriptome Reveals Candidate Genes and Expression Divergence of Homoeologous Genes in Response to Water Stress in WheatCited by: 10
Author(s): Behnam Derakhshani, Habtamu Ayalew, Kohei Mishina, Tsuyoshi Tanaka, Yoshihiro Kawahara, Hossein Jafary, Youko Oono
Software Mentions: 1
Published: over 6 years ago
10.1186/s13046-019-1116-0
Overexpression of the cohesin-core subunit SMC1A contributes to colorectal cancer developmentCited by: 32
Author(s): Patrizia Sarogni, Orazio Palumbo, Adele Servadio, Simonetta Astigiano, Barbara D’Alessio, Veronica Gatti, Dubravka Cukrov, Silvia Baldari, Maria Michela Pallotta, Paolo Aretini, Felice Dell’Orletta, Silvia Soddu, Massimo Carella, Gabriele Toietta, Ottavia Barbieri, Gabriella Fontanini, Antonio Musio
Software Mentions: 1
Published: over 7 years ago
10.3389/fonc.2020.00642
ETS1 Suppresses Tumorigenesis of Human Breast Cancer via Trans-Activation of Canonical Tumor Suppressor GenesCited by: 11
Author(s): Gi-Cheon Kim, Choong-Gu Lee, Ravi Verma, Dipayan Rudra, Taemook Kim, Keunsoo Kang, Jong Hee Nam, Young Kim, Sungbin Im, Ho-Keun Kwon
Software Mentions: 1
Published: over 6 years ago
10.1007/s00497-019-00362-z
Comparative transcriptome analysis reveals new molecular pathways for cucumber genes related to sex determinationCited by: 21
Author(s): Magdalena Pawełkowicz, Leszek P. Pryszcz, Agnieszka Skarzyńska, Rafał Wóycicki, Kacper Posyniak, Jacek Rymuszka, Zbigniew Przybecki, Wojciech Pląder
Software Mentions: 1
Published: over 7 years ago
10.3389/fonc.2020.524128
RECQL4, Negatively Regulated by miR-10a-5p, Facilitates Cell Proliferation and Invasion via MAFB in Ovarian CancerCited by: 15
Author(s): Li Guo, Yingwei Li, Chen Zhao, Jiali Peng, Kun Song, Long Chen, Ping Zhang, Hongbing Ma, Cunzhong Yuan, Yan Shi, Yan Fang, Beihua Kong
Software Mentions: 1
Published: about 6 years ago
10.1007/s11105-018-1088-9
Genomic and Transcriptomic Analysis Identified Gene Clusters and Candidate Genes for Oil Content in Peanut (Arachis hypogaea L.)Cited by: 16
Author(s): Xiaohua Wang, Ping Xu, Yin Liang, Yan Ren, Shuangling Li, Yùzhēn Shí, Thomas D. Alcock, Qing Xiong, Wei Qian, Xiaoyuan Chi, Manish K. Pandey, Rajeev K. Varshney, Ming Yüan
Software Mentions: 1
Published: over 8 years ago
10.3389/fonc.2018.00033
Olfactory Receptors as Biomarkers in Human Breast Carcinoma TissuesCited by: 51
Author(s): Lea Weber, Désirée Maßberg, Christian Becker, Janine Altmüller, Burkhard Ubrig, G. Bonatz, Gerhard Wölk, Stathis Philippou, Andrea Tannapfel, Hanns Hatt, Günter Gisselmann
Software Mentions: 1
Published: over 8 years ago
10.1186/1471-2164-15-521
Examining the condition-specific antisense transcription in S. cerevisiae and S. paradoxusCited by: 9
Author(s): Krishna B S Swamy, Chih-Hsu Lin, Ming‐Ren Yen, Chuen-Yi Wang, Daryi Wang
Software Mentions: 1
Published: over 12 years ago
10.3389/fphar.2018.00514
Integration of Metabonomics and Transcriptomics Reveals the Therapeutic Effects and Mechanisms of Baoyuan Decoction for Myocardial IschemiaCited by: 26
Author(s): Zhi Yong Du, Ze Liu Shu, Lei Wei, Chun Li, Ke Zeng, Xiao Guo, Ming Zhao, Peng Tu, Yong Jiang
Software Mentions: 1
Published: over 8 years ago
10.1002/advs.202001365
Efficient Isolation and Enrichment of Mesenchymal Stem Cells from Human Embryonic Stem Cells by Utilizing the Interaction between Integrin<i>α</i>5<i>β</i>1 and FibronectinCited by: 8
Author(s): Byung-Hyun Cha, Jin-Su Kim, Alvin Bacero Bello, Geun-Hui Lee, Dohyun Kim, Byoung Ju Kim, Yoshie Arai, Bok Hee Choi, Hansoo Park, Soo−Hong Lee
Software Mentions: 1
Published: about 6 years ago