Projects: pypi: TopHat
https://packages.ecosyste.ms/registries/pypi.org/packages/TopHat
TopHat Platform
3 versions
Latest release: about 14 years ago
9 downloads last month
Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem
Very Likely Science (90)
Papers Mentioning TopHat 5,017
10.18632/oncotarget.17958
Identification of SRF-E2F1 fusion transcript in EWSR-negative myoepithelioma of the soft tissueCited by: 14
Author(s): Milena Urbini, Annalisa Astolfi, Valentina Indio, Giuseppe Tarantino, Salvatore Serravalle, Maristella Saponara, Margherita Nannini, Alessandro Gronchi, Marco Fiore, Roberta Maestro, Monica Brenca, Angelo Paolo Dei Tos, Gian Paolo Dagrada, Tiziana Negri, Silvana Pilotti, Paolo G. Casali, Guido Biasco, Andrea Pession, Silvia Stacchiotti, Maria Abbondanza Pantaleo
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pbio.1001647
Analysis of the RelA:CBP/p300 Interaction Reveals Its Involvement in NF-κB-Driven TranscriptionCited by: 113
Author(s): Sulakshana Mukherjee, Marcelo Behar, Harry Birnbaum, Alexander Hoffmann, Peter E. Wright, Gourisankar Ghosh
Software Mentions: 1
Published: about 13 years ago
10.1128/mSystems.00035-17
Transcriptome Analysis of Polyhydroxybutyrate Cycle Mutants Reveals Discrete Loci Connecting Nitrogen Utilization and Carbon Storage in <i>Sinorhizobium meliloti</i>Cited by: 16
Author(s): Maya D’Alessio, Ricardo Nordeste, Andrew C. Doxey, Trevor C. Charles
Software Mentions: 1
Published: almost 9 years ago
10.3389/fncel.2015.00438
REST-Governed Gene Expression Profiling in a Neuronal Cell Model Reveals Novel Direct and Indirect Processes of Repression and Up-RegulationCited by: 9
Author(s): José Manuel García-Manteiga, Silvia Bonfiglio, Lucrezia Folladori, Maria Luisa Malosio, Dejan Lazarevic, Elia Stupka, Davide Cittaro, Jacopo Meldolesi
Software Mentions: 1
Published: almost 11 years ago
10.3389/fendo.2018.00308
Pituitary Action of E2 in Prepubertal Grass Carp: Receptor Specificity and Signal Transduction for Luteinizing Hormone and Follicle-Stimulating Hormone RegulationCited by: 10
Author(s): Xiangfeng Qin, Yaqian Xiao, Ya Cheng, Jingyi Jia, Xiangjiang Liu, Hongwei Liang, Guiwei Zou, Guangfu Hu
Software Mentions: 1
Published: over 8 years ago
10.3389/fendo.2020.614692
Dietary Oxysterol, 7-Ketocholesterol Accelerates Hepatic Lipid Accumulation and Macrophage Infiltration in Obese MiceCited by: 7
Author(s): Jiuyang Chang, Masahiro Koseki, Ayami Saga, Kotaro Kanno, Tomoaki Higo, Daisuke Okuzaki, Takeshi Okada, Haruyuki Inui, Katsunao Tanaka, Masumi Asaji, Yinghong Zhu, Takumi Kawaguchi, Masafumi Ono, Toshiji Saibara, Ikuyo Ichi, Tohru Ohama, Makoto Nishida, Shizuya Yamashita, Yasushi Sakata
Software Mentions: 1
Published: over 5 years ago
10.3389/fendo.2020.00111
Liver Transcriptomic Reveals Novel Pathways of Empagliflozin Associated With Type 2 Diabetic RatsCited by: 9
Author(s): Qiuyue Lv, Liang Le, Jiamei Xiang, Baoping Jiang, Sibao Chen, Pei‐Gen Xiao
Software Mentions: 1
Published: over 6 years ago
10.3389/fendo.2020.565858
Hepatic Transcriptome Analysis Revealing the Molecular Pathogenesis of Type 2 Diabetes Mellitus in Zucker Diabetic Fatty RatsCited by: 4
Author(s): Chengdong Xia, Xiuli Zhang, Tian-Shu Cao, Jiannong Wang, Cuidan Li, Liya Yue, Kaifeng Niu, Yicheng Shen, Ge Ma, Fei Chen
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pbio.3000452
A hormone receptor pathway cell-autonomously delays neuron morphological aging by suppressing endocytosisCited by: 10
Author(s): Charlotte Richardson, Callista Yee, Kang Shen
Software Mentions: 1
Published: about 7 years ago
10.1128/mSystems.00065-17
Functional Changes in the Gut Microbiome Contribute to Transforming Growth Factor β-Deficient Colon CancerCited by: 44
Author(s): Scott G. Daniel, Corbie Ball, David G. Besselsen, Tom Doetschman, Bonnie Hurwitz
Software Mentions: 1
Published: almost 9 years ago
10.1186/1471-2164-13-473
Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-SeqCited by: 73
Author(s): Kyung-Do Park, Jongsun Park, Junsu Ko, Byung Chul Kim, Heui‐Soo Kim, Kung Ahn, Kyoung-Tag Do, Hansol Choi, Hak-Min Kim, Sanghoon Song, Sung-Hoon Lee, Sungwoong Jho, Hong Sik Kong, Young Mok Yang, Byung-Hak Jhun, Chulhong Kim, Tae-Hyung Kim, Seungwoo Hwang, Jong Bhak, Hak-Kyo Lee, Byung-Wook Cho
Software Mentions: 1
Published: about 14 years ago
10.1371/journal.pbio.2004049
Reporters to mark and eliminate basal or luminal epithelial cells in culture and in vivoCited by: 16
Author(s): O. Sonzogni, Jennifer Haynes, Laurie A. Seifried, Yahia M. Kamel, Kai Huang, Michael D. BeGora, Faith Au Yeung, Céline Robert-Tissot, Yujing J. Heng, Xin Yuan, Gerbug M. Wulf, Ken J. Kron, Elvin Wagenblast, Mathieu Lupien, Thomas Kislinger, Gregory J. Hannon, Senthil K. Muthuswamy
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pbio.2006966
Environment-induced same-sex mating in the yeast Candida albicans through the Hsf1–Hsp90 pathwayCited by: 17
Author(s): Guijian Guan, Tao Li, Huizhen Yue, Weihong Liang, Jiao Gong, Bing Jian, Qiushi Zheng, Amanda O. Veri, Shuru Fan, Nicole Robbins, Leah E. Cowen, Guanghua Huang
Software Mentions: 1
Published: over 7 years ago
10.3389/fgene.2018.00256
Messenger RNA Sequencing and Pathway Analysis Provide Novel Insights Into the Susceptibility to Salmonella enteritidis Infection in ChickensCited by: 16
Author(s): Peng Li, Wenlei Fan, Nadia Everaert, Ranran Liu, Qinghe Li, Maiqing Zheng, Huanxian Cui, Guiping Zhao, Jie Wen
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pbio.3000563
Mediator MED23 regulates inflammatory responses and liver fibrosisCited by: 7
Author(s): Zhichao Wang, Dan Cao, Chonghui Li, Lihua Min, Gang Wang
Software Mentions: 1
Published: almost 7 years ago
10.3390/plants9101298
Overexpression of OsC3H10, a CCCH-Zinc Finger, Improves Drought Tolerance in Rice by Regulating Stress-Related GenesCited by: 22
Author(s): So Yoon Seong, Jae Sung Shim, Seung Woon Bang, Ju-Kon Kim
Software Mentions: 1
Published: about 6 years ago