An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: TopHat

https://packages.ecosyste.ms/registries/pypi.org/packages/TopHat

TopHat Platform
3 versions
Latest release: almost 13 years ago
9 downloads last month

Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem

Very Likely Science (90)

Papers Mentioning TopHat 5,017

10.3389/fneur.2019.00675
Aging Increases Hippocampal DUSP2 by a Membrane Cholesterol Loss-Mediated RTK/p38MAPK Activation Mechanism
Cited by: 4
Author(s): Adrián Martín‐Segura, Álvaro Casadomé‐Perales, Pietro Fazzari, José Manuel Mas, Laura Artigas, Raquel Valls, Ángel R. Nebreda, Carlos G. Dotti
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pgen.1004292
Molecular Mechanisms of Hypoxic Responses via Unique Roles of Ras1, Cdc24 and Ptp3 in a Human Fungal Pathogen Cryptococcus neoformans
Cited by: 14
Author(s): Yun C. Chang, Ami Khanal Lamichhane, H. Martin Garraffo, Peter J. Walter, Maarten Leerkes, Kyung J. Kwon‐Chung
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0030630
Transcriptome Analysis of the Model Protozoan, Tetrahymena thermophila, Using Deep RNA Sequencing
Cited by: 108
Author(s): Jie Xiong, Xianbo Lu, Zhemin Zhou, Yue Chang, Dan Yuan, Miao Tian, Zhigang Zhou, Lei Wang, Chengjie Fu, Eduardo Orias, Wei Miao
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0014040
Integrated Genetic and Epigenetic Analysis Identifies Haplotype-Specific Methylation in the FTO Type 2 Diabetes and Obesity Susceptibility Locus
Cited by: 223
Author(s): Christopher G. Bell, Sarah Finer, Cecilia M. Lindgren, Gareth A. Wilson, Vardhman K. Rakyan, Andrew E. Teschendorff, Pelin Akan, Elia Stupka, Thomas A. Down, Inga Prokopenko, Ian M. Morison, Jonathan Mill, Ruth Pidsley, Panos Deloukas, Timothy M. Frayling, Andrew T. Hattersley, Mark I. McCarthy, Stephan Beck, G. A. Hitman
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0071763
Transcriptome Profile at Different Physiological Stages Reveals Potential Mode for Curly Fleece in Chinese Tan Sheep
Cited by: 52
Author(s): Xiaolong Kang, Gang Liu, Yufang Liu, Qinqin Xu, Ming Zhang, Meiying Fang
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pgen.1006403
Programmed Minichromosome Elimination as a Mechanism for Somatic Genome Reduction in Tetrahymena thermophila
Cited by: 17
Author(s): Chih-Yi Lin, I-Ting Lin, Meng-Chao Yao
Software Mentions: 1
Published: over 8 years ago
10.3389/fnins.2019.00313
Excess Folic Acid Supplementation Before and During Pregnancy and Lactation Activates Fos Gene Expression and Alters Behaviors in Male Mouse Offspring
Cited by: 18
Author(s): Dandan Chu, Longfei Li, Yiyi Jiang, Jun Tan, Jie Ji, Yongli Zhang, Nana Jin, Fei Liu
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0165290
Elucidation of Relevant Neuroinflammation Mechanisms Using Gene Expression Profiling in Patients with Amyotrophic Lateral Sclerosis
Cited by: 20
Author(s): Yu Hui Won, Min Young Lee, Young Chul Choi, You Jung Ha, Hyongbum Kim, Do Young Kim, Myung Sun Kim, Ji Hea Yu, Jung Hwa Seo, Mingi Kim, Sung Rae Cho, Seong-Woong Kang
Software Mentions: 1
Published: over 8 years ago
10.1038/s41598-020-57592-9
The Asthma-associated PER1-like domain-containing protein 1 (PERLD1) Haplotype Influences Soluble Glycosylphosphatidylinositol Anchor Protein (sGPI-AP) Levels in Serum and Immune Cell Proliferation
Cited by: 3
Author(s): Yang Yie Sio, Ramani Anantharaman, Sean Qiu En Lee, Sri Anusha Matta, Yu Ting Ng, Fook Tim Chew
Software Mentions: 1
Published: over 5 years ago
10.18632/oncotarget.8556
Read-through transcripts in normal human lung parenchyma are down-regulated in lung adenocarcinoma
Cited by: 14
Author(s): Giulia Pintarelli, Alice Dassano, Chiara E. Cotroneo, Antonella Galvan, Sara Noci, Rocco Piazza, Alessandra Pirola, Roberta Spinelli, Matteo Incarbone, Alessandro Palleschi, Lorenzo Rosso, Luigi Santambrogio, Tommaso A. Dragani, Francesca Colombo
Software Mentions: 1
Published: over 9 years ago
10.3389/fonc.2019.00654
The Natural Compound Neobractatin Induces Cell Cycle Arrest by Regulating E2F1 and Gadd45α
Cited by: 7
Author(s): Zhaoqing Zheng, Man Wu, Juan Zhang, Wenwei Fu, Ning Xu, Yuanzhi Lao, Lan Lin, Hong‐Xi Xu
Software Mentions: 1
Published: about 6 years ago
10.3389/fonc.2019.00630
Digitoxin Inhibits Epithelial-to-Mesenchymal-Transition in Hereditary Castration Resistant Prostate Cancer
Cited by: 10
Author(s): Bette S. Pollard, Mark A. Suckow, William R. Wolter, Joshua Starr, Ofer Eidelman, Clifton L. Dalgard, Pravin Kumar, Sharmistha Battacharyya, Meera Srivastava, Roopa Biswas, Matthew D. Wilkerson, Xijun Zhang, Qingfeng Yang, Harvey B. Pollard
Software Mentions: 1
Published: almost 6 years ago
10.3389/fonc.2020.547011
Downregulation of DUSP9 Promotes Tumor Progression and Contributes to Poor Prognosis in Human Colorectal Cancer
Cited by: 7
Author(s): Zhaoyan Qiu, Ning Liang, Qian Huang, Tongwen Sun, Hongyuan Xue, Tianyu Xie, Xinxin Wang, Qian Wang
Software Mentions: 1
Published: almost 5 years ago
10.3389/fonc.2015.00154
Spontaneous Transformation of Murine Oviductal Epithelial Cells: A Model System to Investigate the Onset of Fallopian-Derived Tumors
Cited by: 21
Author(s): Michael P. Endsley, Georgette Moyle-Heyrman, Subbulakshmi Karthikeyan, Daniel D. Lantvit, David A. Davis, Jian Jun Wei, Joanna E. Burdette
Software Mentions: 1
Published: about 10 years ago
10.3389/fonc.2017.00019
Inhibition of DNA and Histone Methylation by 5-Aza-2′-Deoxycytidine (Decitabine) and 3-Deazaneplanocin-A on Antineoplastic Action and Gene Expression in Myeloid Leukemic Cells
Cited by: 22
Author(s): Richard L. Momparler, Sylvie Côté, Louise F. Momparler, Youssef Idaghdour
Software Mentions: 1
Published: over 8 years ago
10.1186/s12934-021-01560-z
Comprehensive transcriptomic and proteomic analyses identify intracellular targets for myriocin to induce Fusarium oxysporum f. sp. niveum cell death
Cited by: 6
Author(s): Hengxu Wang, Zhigang Wang, Weihui Xu, Kexin Wang
Software Mentions: 1
Published: over 4 years ago