10.3389/fmicb.2018.01237

Comparative Transcriptome Analysis Between a Spontaneous Albino Mutant and Its Sibling Strain of Cordyceps militaris in Response to Light Stress
Cited by: 16
Author(s): Fen Wang, Qing Liu, Jiaojiao Zhang, Kuanbo Liu, Kuan Li, Guijun Liu, Caihong Dong
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0146511

Reduced Glucose Sensation Can Increase the Fitness of Saccharomyces cerevisiae Lacking Mitochondrial DNA
Cited by: 6
Author(s): Emel Akdoğan, Mehmet Tardu, Görkem Garipler, Gülkız Baytek, İbrahim Halil Kavaklı, Cory D. Dunn
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-019-6095-1

Genomic characteristics and comparative genomics analysis of the endophytic fungus Sarocladium brachiariae
Cited by: 20
Author(s): Yang Yang, Xiaobao Liu, Jing Cai, Yipeng Chen, Boxun Li, Zhi‐Kai Guo, Huang Guixiu
Software Mentions: 1
Published: over 5 years ago

10.3389/fmicb.2020.01258

Effects of a Type I RM System on Gene Expression and Glycogen Catabolism in Synechocystis sp. PCC 6803
Cited by: 4
Author(s): Donghui Wu, Yali Wang, Xudong Xu
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2020.00276

Distinctive Gene Expression Profiles and Effectors Consistent With Host Specificity in Two Formae Speciales of Marssonina brunnea
Cited by: 4
Author(s): Fei Ren, Donghui Yan, Guanghua Wu, Xiaoming Sun, Xiaoyu Song, Ruhua Li
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0178008

Genomic and transcriptomic analyses reveal adaptation mechanisms of an Acidithiobacillus ferrivorans strain YL15 to alpine acid mine drainage
Cited by: 28
Author(s): Tangjian Peng, Liyuan Ma, Xue Feng, Jiemeng Tao, Mei-hua Nan, Yuandong Liu, Jiaokun Li, Ли Шен, Xueling Wu, Runlan Yu, Xueduan Liu, Guanzhou Qiu, Weimin Zeng
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0094250

FANSe2: A Robust and Cost-Efficient Alignment Tool for Quantitative Next-Generation Sequencing Applications
Cited by: 39
Author(s): Chuan-Le Xiao, Zhibiao Mai, Xinlei Lian, Jiayong Zhong, Jingjie Jin, Qing‐Yu He, Gong Zhang
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-14-304

Functional transcriptomic analysis of the role of MAB-5/Hox in Q neuroblast migration in Caenorhabditis elegans
Cited by: 13
Author(s): Joel V. Tamayo, Mahekta R Gujar, Stuart J. Macdonald, Erik A. Lundquist
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2015.01324

Sophorolipids Production by Candida bombicola ATCC 22214 and its Potential Application in Microbial Enhanced Oil Recovery
Cited by: 103
Author(s): Abdulkadir E. Elshafie, Sanket Joshi, Yahya Al-Wahaibi, Ali Al-Bemani, Saif N. Al-Bahry, Dua’a Al-Maqbali, Ibrahim M. Banat
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2016.02056

Hydrocarbonoclastic Alcanivorax Isolates Exhibit Different Physiological and Expression Responses to n-dodecane
Cited by: 25
Author(s): Marta Barbato, Alberto Scoma, Francesca Mapelli, Rita De Smet, Ibrahim M. Banat, Daniele Daffonchio, Nico Boon, Sara Borin
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0183007

Transcriptional responses of ecologically diverse Drosophila species to larval diets differing in relative sugar and protein ratios
Cited by: 14
Author(s): Nestor O. Nazario-Yepiz, Mariana Ramírez Loustalot-Laclette, Javier Carpinteyro-Ponce, Cei Abreu‐Goodger, Therese A. Markow
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.10127

Transcriptome sequencing of neurologic diseases associated genes in HHV-6A infected human astrocyte
Cited by: 7
Author(s): Qing Shao, Liu Zhe, Xiaohui Wu, Junwei Tang, Shan Lü, Dan Feng, Ci Cheng, Lanqun Qing, Kun Yao, Yun Chen
Software Mentions: 1
Published: about 9 years ago

10.1128/mSphere.00478-18

Regulation of Epstein-Barr Virus Life Cycle and Cell Proliferation by Histone H3K27 Methyltransferase EZH2 in Akata Cells
Cited by: 23
Author(s): Takaya Ichikawa, Yusuke Okuno, Yoshitaka Sato, Fumi Goshima, Hironori Yoshiyama, Teru Kanda, Hiroshi Kimura, Takayuki Murata
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-15-226

Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing
Cited by: 109
Author(s): Xiaogang Cui, Yali Hou, Shaohua Yang, Yan Xie, Shengli Zhang, Yuan Zhang, Qin Zhang, Xuemei Lu, George E. Liu, Dongxiao Sun
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0227020

Heterogeneous root zone salinity mitigates salt injury to Sorghum bicolor (L.) Moench in a split-root system
Cited by: 5
Author(s): Huawen Zhang, Runfeng Wang, Hailian Wang, Bin Liu, Ming Xu, Yanan Guan, Yanbing Yang, Ling Qin, Erying Chen, Feifei Li, Huang Rui, Yufei Zhou
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-018-5316-3

Integrated microRNA and mRNA analysis in the pathogenic filamentous fungus Trichophyton rubrum
Cited by: 23
Author(s): Lingling Wang, Xingye Xu, Jian Yang, Lihong Chen, Bo Liu, Tao Liu, Qi Jin
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.570269

Ribosomal Protein L40e Fused With a Ubiquitin Moiety Is Essential for the Vegetative Growth, Morphological Homeostasis, Cell Cycle Progression, and Pathogenicity of Cryptococcus neoformans
Cited by: 3
Author(s): Jingyu Zhao, Yuchao Yang, Yu Fan, Jun Koo Yi, Chao Zhang, Zhongkai Gu, Weihua Pan, Jun Gu, Wanqing Liao, Wei Fang
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.01646

Functional Genomics, Transcriptomics, and Proteomics Reveal Distinct Combat Strategies Between Lineages of Wood-Degrading Fungi With Redundant Wood Decay Mechanisms
Cited by: 12
Author(s): Gerald N. Presley, Jiwei Zhang, Samuel O. Purvine, Jonathan S. Schilling
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.10197

The activation of OR51E1 causes growth suppression of human prostate cancer cells
Cited by: 47
Author(s): Désirée Maßberg, Nikolina Jovancevic, Anne Offermann, Annika Simon, Aria Baniahmad, Thanakorn Pungsrinont, Katarina Luko, Stathis Philippou, Burkhard Ubrig, Markus Heiland, Lea Weber, Janine Altmüller, Christian Becker, Günter Gisselmann, Lian Gelis, Hanns Hatt
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2020.619474

Impact of the White Collar Photoreceptor WcoA on the Fusarium fujikuroi Transcriptome
Cited by: 8
Author(s): Javier Pardo-Medina, Gabriel Gutiérrez, M. Carmen Limón, Javier Ávalos
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2019.02087

Proteotyping of Clostridioides difficile as Alternate Typing Method to Ribotyping Is Able to Distinguish the Ribotypes RT027 and RT176 From Other Ribotypes
Cited by: 8
Author(s): Matthias Frederik Emele, Felix M. Joppe, Thomas Riedel, Jörg Overmann, Maja Rupnik, Paul Cooper, R. Lia Kusumawati, Фабиан Бергер, Friederike Laukien, Ortrud Zimmermann, Wolfgang Bohne, Uwe Groß, Oliver Bader, Andreas E. Zautner
Software Mentions: 1
Published: almost 6 years ago

10.1128/mSystems.00035-17

Transcriptome Analysis of Polyhydroxybutyrate Cycle Mutants Reveals Discrete Loci Connecting Nitrogen Utilization and Carbon Storage in <i>Sinorhizobium meliloti</i>
Cited by: 16
Author(s): Maya D’Alessio, Ricardo Nordeste, Andrew C. Doxey, Trevor C. Charles
Software Mentions: 1
Published: over 7 years ago

10.1128/mSystems.00065-17

Functional Changes in the Gut Microbiome Contribute to Transforming Growth Factor β-Deficient Colon Cancer
Cited by: 44
Author(s): Scott G. Daniel, Corbie Ball, David G. Besselsen, Tom Doetschman, Bonnie Hurwitz
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-020-07014-x

Genome-wide analysis of long non-coding RNAs in adult tissues of the melon fly, Zeugodacus cucurbitae (Coquillett)
Cited by: 16
Author(s): Weijun Li, Yujia Song, Hong-Liang Han, Hui-Qian Xu, Dong Wei, Guy Smagghe, Jinjun Wang
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0227102

Ontogenic mRNA expression of RNA modification writers, erasers, and readers in mouse liver
Cited by: 12
Author(s): Liming Chen, Pei Wang, Raman Bahal, José E. Manautou, Xiao‐bo Zhong
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0099720

Differences in Muscle Transcriptome among Pigs Phenotypically Extreme for Fatty Acid Composition
Cited by: 57
Author(s): Anna Puig-Oliveras, Yuliaxis Ramayo-Caldas, Jordi Corominas, Jordi Estellé, Dafne Pérez-Montarelo, Nicholas J. Hudson, J. Casellas, Josep María Folch, María Ballester
Software Mentions: 1
Published: about 11 years ago

10.3389/fmicb.2020.00986

Distinct Cell Transcriptomic Landscapes Upon Henipavirus Infections
Cited by: 2
Author(s): Mingyue Chen, Mary Tachedjian, Glenn A. Marsh, Jie Cui, Lin‐Fa Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2019.02493

Alternative Sigma Factor B in Bovine Mastitis-Causing Staphylococcus aureus: Characterization of Its Role in Biofilm Formation, Resistance to Hydrogen Peroxide Stress, Regulon Members
Cited by: 6
Author(s): Sirirak Supa-amornkul, Paninee Mongkolsuk, Pijug Summpunn, Pongkorn Chaiyakunvat, Warisara Navaratdusit, Chutima Jiarpinitnun, Soraya Chaturongakul
Software Mentions: 1
Published: over 5 years ago

10.18632/oncotarget.26177

Mutant TP53 modulates metastasis of triple negative breast cancer through adenosine A2b receptor signaling
Cited by: 12
Author(s): Eisuke Horigome, Michiru Fujieda, Tadashi Handa, Ayaka Katayama, Masashi Ito, Ami Ichihara, Daiki Tanaka, Navchaa Gombodorj, Shinji Yoshiyama, Arito Yamane, Keiichi Yamada, Jun Horiguchi, Kazuo Shinozuka, Tetsunari Oyama, Masahiko Nishiyama, Susumu Rokudai
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0169598

Transcriptomic Analysis of Calonectria pseudoreteaudii during Various Stages of Eucalyptus Infection
Cited by: 13
Author(s): Xiaozhen Ye, Hongyi Liu, Yajie Jin, Mengmeng Guo, Aizhen Huang, Quanzhu Chen, Wenhui Guo, Feiping Zhang, Li Feng
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.10788

Gene expression analysis of TIL rich HPV-driven head and neck tumors reveals a distinct B-cell signature when compared to HPV independent tumors
Cited by: 82
Author(s): Oliver Wood, Jeongmin Woo, Grégory Seumois, Natalia Savelyeva, Katy J. McCann, Divya Singh, Terry M. Jones, Lailah Peel, Michael S. Breen, Matthew J. Ward, Eva M. Garrido-Martin, Tilman Sánchez-Elsner, Gareth J. Thomas, Pandurangan Vijayanand, Christopher H. Woelk, Emma V. King, Christian Ottensmeier
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2020.603131

Targeting the Histone Methyltransferase Disruptor of Telomeric Silencing 1-Like Restricts Avian Leukosis Virus Subgroup J Replication by Restoring the Innate Immune Response in Chicken Macrophages
Cited by: 5
Author(s): Shihao Chen, Dedong Wang, Yinyin Liu, Ruihan Zhao, Ting Wu, Xuming Hu, Zhiming Pan, Hengmi Cui
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0135159

Constitutive Activation of an Anthocyanin Regulatory Gene PcMYB10.6 Is Related to Red Coloration in Purple-Foliage Plum
Cited by: 33
Author(s): Chao Gu, Liao Liao, Hui Zhou, Lu Wang, Ximing Deng, Yuepeng Han
Software Mentions: 1
Published: almost 10 years ago

10.3389/fmicb.2020.00901

Temperature Dramatically Shapes Mosquito Gene Expression With Consequences for Mosquito–Zika Virus Interactions
Cited by: 27
Author(s): Patrícia Rodrigues Ferreira, Blanka Tesla, Elvira Cynthia Alves Horácio, Laila Alves Nahum, Melinda A. Brindley, Tiago Antônio de Oliveira Mendes, Courtney C. Murdock
Software Mentions: 1
Published: about 5 years ago

10.1007/s00439-013-1356-6

Comprehensive analysis of the transcriptional landscape of the human FMR1 gene reveals two new long noncoding RNAs differentially expressed in Fragile X syndrome and Fragile X-associated tremor/ataxia syndrome
Cited by: 89
Author(s): Chiara Pastori, Veronica J. Peschansky, Deborah Barbouth, Arpit Mehta, José P. Silva, Claes Wahlestedt
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0188715

Deletion of lynx1 reduces the function of α6* nicotinic receptors
Cited by: 14
Author(s): Rell L. Parker, Heidi C. O’Neill, Beverley M. Henley, Charles R. Wageman, Ryan M. Drenan, Michael J. Marks, Julie M. Miwa, Sharon R. Grady, Henry A. Lester
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.01919

Transcriptomic Insights Into the Growth Phase- and Sugar-Associated Changes in the Exopolysaccharide Production of a High EPS-Producing Streptococcus thermophilus ASCC 1275
Cited by: 27
Author(s): Aparna Padmanabhan, Ying Tong, Qinglong Wu, Jiangwen Zhang, Nagendra P. Shah
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.11273

PPARγ agonists promote differentiation of cancer stem cells by restraining YAP transcriptional activity
Cited by: 39
Author(s): Upal Basu-Roy, Eugenia J. Han, Kirk Rattanakorn, Abhilash Gadi, N. K. Verma, Giulia Maurizi, Preethi H. Gunaratne, Cristian Coarfa, Oran D. Kennedy, Michael J. Garabedian, Claudio Basilico, Alka Mansukhani
Software Mentions: 1
Published: almost 9 years ago

10.1186/s40246-017-0101-y

Transcriptome analysis of bronchoalveolar lavage fluid from children with severe Mycoplasma pneumoniae pneumonia reveals novel gene expression and immunodeficiency
Cited by: 20
Author(s): Way Kuo, Man Gao, Mengxuan Yang, Fanzheng Meng, Deli Li, Ruipeng Lu, Yan Wang, Huadong Zhuang, Mengyao Li, Genhong Cheng, Xiaosong Wang
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0149061

Identification of Targets of CUG-BP, Elav-Like Family Member 1 (CELF1) Regulation in Embryonic Heart Muscle
Cited by: 29
Author(s): Yotam Blech-Hermoni, Twishasri Dasgupta, Ryan J. Coram, Andrea N. Ladd
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0132345

Next-Generation Sequencing Techniques Reveal that Genomic Imprinting Is Absent in Day-Old Gallus gallus domesticus Brains
Cited by: 15
Author(s): Qiong Wang, Kaiyang Li, Daixi Zhang, Junying Li, Guiyun Xu, Jiangxia Zheng, Ning Yang, Lujiang Qu
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0113170

Deep Sequencing of the Murine Olfactory Receptor Neuron Transcriptome
Cited by: 69
Author(s): Ninthujah Kanageswaran, Marilen Demond, Maximilian Nagel, Benjamin S. P. Schreiner, Sabrina Baumgart, Paul Scholz, Janine Altmüller, Christian Becker, Julia F. Doerner, Heike Conrad, Sonja Oberland, Christian H. Wetzel, Eva M. Neuhaus, Hanns Hatt, Günter Gisselmann
Software Mentions: 1
Published: over 10 years ago

10.1093/hmg/ddy071

Calpain 3 and CaMKIIβ signaling are required to induce HSP70 necessary for adaptive muscle growth after atrophy
Cited by: 16
Author(s): Irina Kramerova, J. Torres, Ascia Eskin, Stanley F. Nelson, Melissa J. Spencer
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2016.01953

Localization and Transcriptional Responses of Chrysoporthe austroafricana in Eucalyptus grandis Identify Putative Pathogenicity Factors
Cited by: 3
Author(s): Ronishree Mangwanda, Lizahn Zwart, Nicolaas Albertus Van der Merwe, Lucy N. Moleleki, David Kenneth Berger, Alexander Andrew Myburg, Sanushka Naidoo
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2020.02037

VapC21 Toxin Contributes to Drug-Tolerance and Interacts With Non-cognate VapB32 Antitoxin in Mycobacterium tuberculosis
Cited by: 20
Author(s): Arun Sharma, Gopinath Chattopadhyay, Pankaj Chopra, Munmun Bhasin, Chandrani Thakur, Sakshi Agarwal, Shahbaz Ahmed, Nagasuma Chandra, Raghavan Varadarajan, Ramandeep Singh
Software Mentions: 1
Published: almost 5 years ago

10.18632/oncotarget.11207

Target sequencing and CRISPR/Cas editing reveal simultaneous loss of <i>UTX</i> and <i>UTY</i> in urothelial bladder cancer
Cited by: 26
Author(s): Jae Pyung Ahn, Kwang Hyun Kim, Sanghui Park, Young Ho Ahn, Ha Young Kim, Hana Yoon, Ji Hyun Lee, Duhee Bang, Dong Hoon Lee
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0216893

CD45Rb-low effector T cells require IL-4 to induce IL-10 in FoxP3 Tregs and to protect mice from inflammation
Cited by: 11
Author(s): Mark B. Jones, Carlos Álvarez, Jenny L. Johnson, Julie Y. Zhou, Nathan Morris, Brian A. Cobb
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0135810

RNA-Seq Analysis of Abdominal Fat Reveals Differences between Modern Commercial Broiler Chickens with High and Low Feed Efficiencies
Cited by: 53
Author(s): Zhuo Zhu, Susan J. Lamont, William R. Lee, Behnam Abasht
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0204931

Circular RNA and mRNA profiling reveal competing endogenous RNA networks during avian leukosis virus, subgroup J-induced tumorigenesis in chickens
Cited by: 17
Author(s): Lingling Qiu, Guobin Chang, Yue Bi, Xiangping Liu, Guohong Chen
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0191407

Circulating neutrophil transcriptome may reveal intracranial aneurysm signature
Cited by: 25
Author(s): Vincent M. Tutino, Kerry E. Poppenberg, Kaiyu Jiang, James N. Jarvis, Yijun Sun, Ashish Sonig, Adnan H. Siddiqui, Kenneth V. Snyder, Elad I. Levy, John Kolega
Software Mentions: 1
Published: over 7 years ago

10.1093/hmg/ddv622

Insertion of an SVA-E retrotransposon into the<i>CASP8</i>gene is associated with protection against prostate cancer
Cited by: 21
Author(s): Simon Stacey, Birte Kehr, Jūlı́us Guðmundsson, Florian Zink, Áslaug Jónasdóttir, Sigurjon A. Gudjonsson, Ásgeir Sigurðsson, Bjarni V. Halldórsson, Bjarni A. Agnarsson, Kristrún R. Benediktsdóttir, Katja K.H. Aben, Sita H. Vermeulen, R.G.H.M. Cremers, Angeles Panadero, Brian T. Helfand, Phillip R. Cooper, Jenny Donovan, Freddie C. Hamdy, Viorel Jinga, Ichiro Okamoto, Jón G. Jonasson, Laufey Tryggvadóttír, Hrefna Johannsdottir, Anna M. Kristinsdottir, Gísli Másson, Ólafur Þ. Magnússon, Paul D. Iordache, Agnar Helgason, Hannes Helgason, Patrick Sulem, Daníel F. Guðbjartsson, Augustine Kong, Eiríkur Jónsson, Rósa B. Barkardóttir, Guðmundur Einarsson, Thorunn Rafnar, Unnur Þorsteinsdóttir, Ioan Nicolae Mateș, David E. Neal, William J. Catàlona, J. I. Mayordomo, Lambertus A. Kiemeney, Guðmar Þorleifsson, Kāri Stefánsson
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2016.01380

DNA Phosphorothioate Modification Plays a Role in Peroxides Resistance in Streptomyces lividans
Cited by: 19
Author(s): Daofeng Dai, Aiqin Du, Kangli Xiong, Tianning Pu, Xing Zhou, Zixin Deng, Liang Ji, Xinyi He, Zhijun Wang
Software Mentions: 1
Published: almost 9 years ago

10.3389/fmicb.2018.01116

Large-Scale Comparative Analysis of Eugenol-Induced/Repressed Genes Expression in Aspergillus flavus Using RNA-seq
Cited by: 37
Author(s): Cong Lv, Ping Wang, Longxue Ma, Mao Zheng, Yang Liu, Fuguo Xing
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0094968

Heat Shock Alters the Expression of Schizophrenia and Autism Candidate Genes in an Induced Pluripotent Stem Cell Model of the Human Telencephalon
Cited by: 39
Author(s): Mingyan Lin, Dejian Zhao, Anastasia Hrabovsky, Erika Pedrosa, Deyou Zheng, Herbert M. Lachman
Software Mentions: 1
Published: over 11 years ago

10.3389/fmicb.2019.02438

Quantitative Proteomics Reveal Peroxiredoxin Perturbation Upon Persistent Lymphocytic Choriomeningitis Virus Infection in Human Cells
Cited by: 5
Author(s): Martin Benej, Maksym Danchenko, Ingrid Ovečková, Filip Červenák, Ľubomír Tomáška, Katarina Grossmannova, Katarína Polčicová, Tereza Golias, Jana Tomaskova
Software Mentions: 1
Published: almost 6 years ago

10.3389/fmicb.2019.02979

Genomic Sequencing of Phyllosticta citriasiana Provides Insight Into Its Conservation and Diversification With Two Closely Related Phyllosticta Species Associated With Citrus
Cited by: 14
Author(s): Mingshuang Wang, Bei Liu, Ruoxin Ruan, Yibing Zeng, Jiawei Luo, Hongye Li
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0181656

The exported chaperone Hsp70-x supports virulence functions for Plasmodium falciparum blood stage parasites
Cited by: 43
Author(s): Sarah C. Charnaud, Matthew W. A. Dixon, Catherine Q Nie, Lia Chappell, Paul R Sanders, Thomas Nebl, Eric Hanssen, Matthew Berriman, Jo‐Anne Chan, Adam J. Blanch, James G. Beeson, Julian C. Rayner, Jude M. Przyborski, Leann Tilley, Brendan S. Crabb, Paul R. Gilson
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0231898

Podocyte RNA sequencing reveals Wnt- and ECM-associated genes as central in FSGS
Cited by: 8
Author(s): Éva Nóra Bukosza, Klaus Kratochwill, Christoph Kornauth, Helga Schachner, Christoph Aufricht, Christoph A. Gebeshuber
Software Mentions: 1
Published: over 5 years ago

10.3389/fmolb.2015.00073

Characterization of the Olfactory Receptors Expressed in Human Spermatozoa
Cited by: 59
Author(s): Caroline Flegel, Felix C. E. Vogel, Adrian Hofreuter, Benjamin S. P. Schreiner, Sandra Osthold, Sophie Veitinger, Christian Becker, Norbert H. Brockmeyer, Michael Muschol, Gunther Wennemuth, Janine Altmüller, Hanns Hatt, Günter Gisselmann
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0137157

Transcriptome Characterization of Developing Bean (Phaseolus vulgaris L.) Pods from Two Genotypes with Contrasting Seed Zinc Concentrations
Cited by: 13
Author(s): Carolina Astudillo-Reyes, Andrea C. Fernandez, Karen A. Cichy
Software Mentions: 1
Published: almost 10 years ago

10.3389/fnmol.2018.00147

Characterization of Lgr6+ Cells as an Enriched Population of Hair Cell Progenitors Compared to Lgr5+ Cells for Hair Cell Generation in the Neonatal Mouse Cochlea
Cited by: 36
Author(s): Yanping Zhang, Luo Guo, Xiaoling Lü, Cheng Cheng, Shan Sun, Wen Li, Liping Zhao, Chuijin Lai, Shasha Zhang, Chenjie Yu, Mingliang Tang, Yan Chen, Renjie Chai, Huawei Li
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.11255

Identification of tumorigenesis-related mRNAs associated with RNA-binding protein HuR in thyroid cancer cells
Cited by: 15
Author(s): Federica Baldan, Catia Mio, Lorenzo Allegri, Ketty Conzatti, Barbara Toffoletto, Cinzia Puppin, Slobodanka Radović, Carlo Vascotto, Diego Russo, Carla Di Loreto, Giuseppe Damante
Software Mentions: 1
Published: almost 9 years ago

10.3389/fnmol.2017.00426

Hedgehog Signaling Promotes the Proliferation and Subsequent Hair Cell Formation of Progenitor Cells in the Neonatal Mouse Cochlea
Cited by: 41
Author(s): Yan Chen, Xiaoling Lü, Luo Guo, Wei Ni, Yanping Zhang, Liping Zhao, Lingjie Wu, Shan Sun, Shasha Zhang, Mingliang Tang, Wenyan Li, Renjie Chai, Huawei Li
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0060837

Generation of Mast Cells from Mouse Fetus: Analysis of Differentiation and Functionality, and Transcriptome Profiling Using Next Generation Sequencer
Cited by: 8
Author(s): Nobuyuki Fukuishi, Yuusuke Igawa, Tomoyo Kunimi, Hirofumi Hamano, Masao Toyota, Hironobu Takahashi, Hiromichi Kenmoku, Yasuyuki Yagi, Nobuaki Matsui, Masaaki Akagi
Software Mentions: 1
Published: over 12 years ago

10.3389/fnmol.2018.00282

Targeted Reactivation of FMR1 Transcription in Fragile X Syndrome Embryonic Stem Cells
Cited by: 41
Author(s): Jill M. Haenfler, Geena Skariah, Caitlin M. Rodriguez, A.M. Rocha, Jack M. Parent, Gary D. Smith, Peter K. Todd
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13075-018-1754-1

Aberrant expression of interleukin-23-regulated miRNAs in T cells from patients with ankylosing spondylitis
Cited by: 12
Author(s): Ning‐Sheng Lai, Hui-Chun Yu, Chien-Hsueh Tung, Kuang-Yung Huang, Huey W. Huang, Ming‐Chi Lu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0121117

Dual RNA Sequencing Reveals the Expression of Unique Transcriptomic Signatures in Lipopolysaccharide-Induced BV-2 Microglial Cells
Cited by: 35
Author(s): Amitabh Das, Jin Choul Chai, Sun Hwa Kim, Kyoung Sun Park, Young Seek Lee, Kyoung Hwa Jung, Young Gyu Chai
Software Mentions: 1
Published: over 10 years ago

10.3389/fnmol.2018.00137

Characterization of Wnt and Notch-Responsive Lgr5+ Hair Cell Progenitors in the Striolar Region of the Neonatal Mouse Utricle
Cited by: 25
Author(s): Dan You, Luo Guo, Wenyan Li, Shan Sun, Yan Chen, Renjie Chai, Huawei Li
Software Mentions: 1
Published: about 7 years ago

10.3389/fnmol.2018.00342

New Insights Into the Role of Cav2 Protein Family in Calcium Flux Deregulation in Fmr1-KO Neurons
Cited by: 17
Author(s): Sara Castagnola, Sébastien Delhaye, Alessandra Folci, Agnès Paquet, Frédéric Brau, Fabrice Duprat, Marielle Jarjat, Mauro Grossi, Méline Béal, Stéphane Martin, Massimo Mantegazza, Barbara Bardoni, Thomas Maurin
Software Mentions: 1
Published: almost 7 years ago

10.18632/oncotarget.12805

SIN3A and SIN3B differentially regulate breast cancer metastasis
Cited by: 27
Author(s): Monica J. Lewis, Jianzhong Liu, Emily Falk Libby, Minnkyong Lee, Nigel P.S. Crawford, Douglas R. Hurst
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0206765

An integrated analysis of mRNA and sRNA transcriptional profiles in tomato root: Insights on tomato wilt disease
Cited by: 15
Author(s): Min Zhao, Huimin Ji, Ying Gao, Xin-Xin Cao, Hui‐Ying Mao, Shan Ouyang, Peng Liu
Software Mentions: 1
Published: over 6 years ago

10.1002/humu.23006

Rare Noncoding Mutations Extend the Mutational Spectrum in the <i>PGAP3</i> Subtype of Hyperphosphatasia with Mental Retardation Syndrome
Cited by: 40
Author(s): Alexej Knaus, Tomonari Awaya, Ingo Helbig, Zaid Afawi, Manuela Pendziwiat, Jubran Abu‐Rachma, Miles D. Thompson, David E. C. Cole, Steve A. Skinner, Fran Annese, Natalie Canham, Michal R. Schweiger, Peter N. Robinson, Stefan Mundlos, Taroh Kinoshita, Arnold Münnich, Yoshiko Murakami, Denise Horn, Peter Krawitz
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0177066

Characterization of joining sites of a viral histone H4 on host insect chromosomes
Cited by: 4
Author(s): Sunil Kumar, Jin Kyo Jung, Yonggyun Kim
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0160751

Transcriptome Analysis Reveals Regulation of Gene Expression for Lipid Catabolism in Young Broilers by Butyrate Glycerides
Cited by: 30
Author(s): Fugui Yin, Hai Yu, Dion Lepp, Xuejiang Shi, Xiaojian Yang, Jielun Hu, S. Leeson, Chengbo Yang, Shaoping Nie, Yongqing Hou, Joshua Gong
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41396-020-0626-2

Bacterial vitamin B12 production enhances nematode predatory behavior
Cited by: 29
Author(s): Nermin Akduman, James W. Lightfoot, Waltraud Röseler, Hanh Witte, Wen‐Sui Lo, Christian Rödelsperger, Ralf J. Sommer
Software Mentions: 1
Published: over 5 years ago

10.3389/fnmol.2017.00122

Characterization of the Transcriptomes of Lgr5+ Hair Cell Progenitors and Lgr5- Supporting Cells in the Mouse Cochlea
Cited by: 38
Author(s): Cheng Cheng, Luo Guo, Ling Lü, Xiaochen Xu, Shasha Zhang, Junyan Gao, Muhammad Waqas, Changsheng Zhu, Yan Chen, Xiaoli Zhang, Chuanying Xuan, Xia Gao, Mingliang Tang, Fangyi Chen, Haibo Shi, Huawei Li, Renjie Chai
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-15-159

Polysome profiling reveals broad translatome remodeling during endoplasmic reticulum (ER) stress in the pathogenic fungus Aspergillus fumigatus
Cited by: 20
Author(s): Karthik Krishnan, Zhaowei Ren, Liliana Losada, William C. Nierman, Long Lu, David Askew
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-020-6566-4

Presence–absence polymorphisms of single-copy genes in the stony coral Acropora digitifera
Cited by: 6
Author(s): Shiho Takahashi-Kariyazono, Kazuhiko Sakai, Yohey Terai
Software Mentions: 1
Published: over 5 years ago

10.7150/ijbs.34820

Generation of Tβ4 knock-in Cashmere goat using CRISPR/Cas9
Cited by: 16
Author(s): Xiaocong Li, Hao Fei, Xiao Hu, Hui Wang, Bai Dai, Xiao Wang, Hao Liang, Ming Cang, Dongjun Liu
Software Mentions: 1
Published: over 6 years ago

10.7150/ijbs.35797

ROBO4 deletion ameliorates PAF-mediated skin inflammation via regulating the mRNA translation efficiency of LPCAT1/LPCAT2 and the expression of PAF receptor
Cited by: 5
Author(s): Xiaoqiang Xiao, Zhaodong Xi, Ciyan Xu, Haoyu Chen, Weiquan Zhu, Chi‐Pui Pang, Mingzhi Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0161410

Elevating CLIC4 in Multiple Cell Types Reveals a TGF-β Dependent Induction of a Dominant Negative Smad7 Splice Variant
Cited by: 11
Author(s): Anjali Shukla, Yihan Yang, Sara Madanikia, Yan Ho, Mangmang Li, Vanesa C. Sanchez, Christophe Cataisson, Jing Huang, Stuart H. Yuspa
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13046-016-0468-y

Exosomes play an important role in the process of psoralen reverse multidrug resistance of breast cancer
Cited by: 59
Author(s): Xiaohong Wang, Chengfeng Xu, Yingqi Hua, Leitao Sun, Kai Chen, Zhongming Jia, Yang Han, Jianli Dong, Yuzhen Cui, Zhenlin Yang
Software Mentions: 1
Published: over 8 years ago

10.3389/fneur.2019.00675

Aging Increases Hippocampal DUSP2 by a Membrane Cholesterol Loss-Mediated RTK/p38MAPK Activation Mechanism
Cited by: 4
Author(s): Adrián Martín‐Segura, Álvaro Casadomé‐Perales, Pietro Fazzari, José Manuel Mas, Laura Artigas, Raquel Valls, Ángel R. Nebreda, Carlos G. Dotti
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.10852

Effective combination therapies in preclinical endocrine resistant breast cancer models harboring ER mutations
Cited by: 23
Author(s): Brendon Ladd, Anne Marie Mazzola, Teeru Bihani, Zhongwu Lai, James R. Bradford, Michael Collins, Evan Barry, Anne U. Goeppert, Hazel M. Weir, Kelly Hearne, Jonathan Renshaw, Morvarid Mohseni, Elaine M. Hurt, Sanjoo Jalla, Haifeng Bao, Robert E. Hollingsworth, Corinne Reimer, Michael Zinda, Stephen E. Fawell, Celina M. D’Cruz
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0142434

Digital Gene Expression Analysis Based on De Novo Transcriptome Assembly Reveals New Genes Associated with Floral Organ Differentiation of the Orchid Plant Cymbidium ensifolium
Cited by: 12
Author(s): Fengming Yang, Genfa Zhu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0185455

Genome-wide expression analysis of salt-stressed diploid and autotetraploid Paulownia tomentosa
Cited by: 20
Author(s): Zhao Zhong, Yongsheng Li, Haifang Liu, Xiaoqiao Zhai, Mei Deng, Yanpeng Dong, Guoqiang Fan
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0106818

Transcriptome Profiling of Spinal Muscular Atrophy Motor Neurons Derived from Mouse Embryonic Stem Cells
Cited by: 36
Author(s): Miho Matsushima, Ashlee W. Harris, Brewster F. Kingham, Casey J. Lumpkin, Lynn M. Opdenaker, Suzanne M. McCahan, Wenlan Wang, Matthew E.R. Butchbach
Software Mentions: 1
Published: almost 11 years ago

10.18632/oncotarget.11913

Oncogenic function and clinical implications of SLC3A2-NRG1 fusion in invasive mucinous adenocarcinoma of the lung
Cited by: 52
Author(s): Dong Hoon Shin, Dong‐Hoon Lee, Dong Ho Hong, Seung Hyun Hong, Jung-Ah Hwang, Byung Il Lee, Hye Jin You, Geon Kook Lee, In-Hoo Kim, Yeon-Su Lee, Ji‐Youn Han
Software Mentions: 1
Published: almost 9 years ago

10.3389/fnins.2019.00313

Excess Folic Acid Supplementation Before and During Pregnancy and Lactation Activates Fos Gene Expression and Alters Behaviors in Male Mouse Offspring
Cited by: 18
Author(s): Dandan Chu, Longfei Li, Yiyi Jiang, Jun Tan, Jie Ji, Yongli Zhang, Nana Jin, Fei Liu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0128951

RNA-Seq Analysis of Human Trigeminal and Dorsal Root Ganglia with a Focus on Chemoreceptors
Cited by: 146
Author(s): Caroline Flegel, Nicole Schöbel, Janine Altmüller, Christian Becker, Andrea Tannapfel, Hanns Hatt, Günter Gisselmann
Software Mentions: 1
Published: about 10 years ago

10.1186/s13023-016-0439-6

Complex translocation disrupting TCF4 and altering TCF4 isoform expression segregates as mild autosomal dominant intellectual disability
Cited by: 23
Author(s): Valerie V. Maduro, Barbara N. Pusey, Praveen F. Cherukuri, Paul Atkins, Christèle du Souich, Rosemarie Rupps, Marjolaine M. Limbos, David R. Adams, Samarth Bhatt, Patrice Eydoux, Amanda Links, Anna Lehman, May Christine V. Malicdan, Christopher E. Mason, Marie Morimoto, James C. Mullikin, Andrew Sear, Clara van Karnebeek, Paweł Stankiewicz, William A. Gahl, Camilo Toro, Cornelius F. Boerkoel
Software Mentions: 1
Published: about 9 years ago

10.1186/s12864-015-1931-4

Transcriptome-enabled marker discovery and mapping of plastochron-related genes in Petunia spp.
Cited by: 23
Author(s): Yufang Guo, Krystle Wiegert‐Rininger, Verónica Vallejo, Cornelius S. Barry, Ryan M. Warner
Software Mentions: 1
Published: almost 10 years ago

10.3389/fonc.2019.00654

The Natural Compound Neobractatin Induces Cell Cycle Arrest by Regulating E2F1 and Gadd45α
Cited by: 7
Author(s): Zhaoqing Zheng, Man Wu, Juan Zhang, Wenwei Fu, Ning Xu, Yuanzhi Lao, Lan Lin, Hong‐Xi Xu
Software Mentions: 1
Published: about 6 years ago

10.3389/fonc.2019.00630

Digitoxin Inhibits Epithelial-to-Mesenchymal-Transition in Hereditary Castration Resistant Prostate Cancer
Cited by: 10
Author(s): Bette S. Pollard, Mark A. Suckow, William R. Wolter, Joshua Starr, Ofer Eidelman, Clifton L. Dalgard, Pravin Kumar, Sharmistha Battacharyya, Meera Srivastava, Roopa Biswas, Matthew D. Wilkerson, Xijun Zhang, Qingfeng Yang, Harvey B. Pollard
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2020.547011

Downregulation of DUSP9 Promotes Tumor Progression and Contributes to Poor Prognosis in Human Colorectal Cancer
Cited by: 7
Author(s): Zhaoyan Qiu, Ning Liang, Qian Huang, Tongwen Sun, Hongyuan Xue, Tianyu Xie, Xinxin Wang, Qian Wang
Software Mentions: 1
Published: almost 5 years ago

10.3389/fonc.2015.00154

Spontaneous Transformation of Murine Oviductal Epithelial Cells: A Model System to Investigate the Onset of Fallopian-Derived Tumors
Cited by: 21
Author(s): Michael P. Endsley, Georgette Moyle-Heyrman, Subbulakshmi Karthikeyan, Daniel D. Lantvit, David A. Davis, Jian Jun Wei, Joanna E. Burdette
Software Mentions: 1
Published: about 10 years ago

10.3389/fonc.2017.00019

Inhibition of DNA and Histone Methylation by 5-Aza-2′-Deoxycytidine (Decitabine) and 3-Deazaneplanocin-A on Antineoplastic Action and Gene Expression in Myeloid Leukemic Cells
Cited by: 22
Author(s): Richard L. Momparler, Sylvie Côté, Louise F. Momparler, Youssef Idaghdour
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-015-1440-5

Transcriptional profile of sweet orange in response to chitosan and salicylic acid
Cited by: 40
Author(s): Danila Souza Oliveira Coqueiro, Alessandra Alves de Souza, Marco Aurélio Takita, Carolina M. Rodrigues, Luciano Takeshi Kishi, Marcos Antônio Machado
Software Mentions: 1
Published: over 10 years ago

10.3389/fonc.2021.717616

Integrative Analysis of Gene Expression Data by RNA Sequencing for Differential Diagnosis of Acute Leukemia: Potential Application of Machine Learning
Cited by: 6
Author(s): Jaewoong Lee, Sungmin Cho, Su Young Hong, Dain Kang, Hayoung Choi, Jong-Mi Lee, Jihyun Yoon, Byung-Sik Cho, Seok Lee, Hee-Je Kim, Myungshin Kim, Yonggoo Kim
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0213305

Transcriptome response of roots to salt stress in a salinity-tolerant bread wheat cultivar
Cited by: 61
Author(s): Nazanin Amirbakhtiar, Ahmad Ismaili, Mohammad Reza Ghaffari, Farhad Nazarian Firouzabadi, Zahra‐Sadat Shobbar
Software Mentions: 1
Published: over 6 years ago