pypi: TopHat | Projects | Ecosyste.ms: Papers

10.1038/s41598-017-02975-8

Transcriptome responses of Lactobacillus acetotolerans F28 to a short and long term ethanol stress
Cited by: 27
Author(s): Xiaopan Yang, Kunling Teng, Jie Zhang, Fangfang Wang, Tong Zhang, Guomin Ai, Pei‐Jie Han, Feng‐Yan Bai, Jin Zhong
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-03874-8

Analysis of Müller glia specific genes and their histone modification using Hes1-promoter driven EGFP expressing mouse
Cited by: 19
Author(s): Kazuko Ueno, Toshiro Iwagawa, Genki Ochiai, Hideto Koso, Hiromitsu Nakauchi, Masao Nagasaki, Yutaka Suzuki, Sumiko Watanabe
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-03976-3

Comparative transcriptomic and proteomic analyses provide insights into the key genes involved in high-altitude adaptation in the Tibetan pig
Cited by: 34
Author(s): Bo Zhang, Yangzom Chamba, Peng Shang, Zhixiu Wang, Jun Ma, Liyuang Wang
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-03980-7

HIF-1-mediated suppression of mitochondria electron transport chain function confers resistance to lidocaine-induced cell death
Cited by: 43
Author(s): Akihisa Okamoto, Chisato Sumi, Hiromasa Tanaka, Munenori Kusunoki, Teppei Iwai, Kenichiro Nishi, Yoshiyuki Matsuo, Hiroshi Harada, Keizo Takenaga, Hidemasa Bono, Kiichi Hirota
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-017-05279-z

Genome-wide analysis of long noncoding RNA profiling in PRRSV-infected PAM cells by RNA sequencing
Cited by: 21
Author(s): Jing Zhang, Pu Sun, Lu Gan, Weijie Bai, Zhijia Wang, Dong Liu, Yimei Cao, Yuanfang Fu, Pinghua Li, Xingwen Bai, Xueqing Ma, Huang Bao, Yingli Chen, Zaixin Liu, Zengjun Lu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-05702-5

Global transcriptome analysis identifies differentially expressed genes related to lipid metabolism in Wagyu and Holstein cattle
Cited by: 55
Author(s): Wanlong Huang, Yuntao Guo, Weihua Du, Xiuxiu Zhang, Li Ai, Xiangyang Miao
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-04303-6

Genome-wide Identification and Characterization of Natural Antisense Transcripts by Strand-specific RNA Sequencing in Ganoderma lucidum
Cited by: 16
Author(s): Junjie Shao, Haimei Chen, Dan Yang, Mei Jiang, Hui Zhang, Bin Wu, Jianqin Li, Lichai Yuan, Chang Liu
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-06516-1

Novel risk genes for systemic lupus erythematosus predicted by random forest classification
Cited by: 42
Author(s): Jonas Carlsson Almlöf, Andrei Alexsson, Juliana Imgenberg‐Kreuz, Lina Sylwan, Christofer Bäcklin, Dag Leonard, Gunnel Nordmark, Karolina Tandre, Maija‐Leena Eloranta, Leonid Padyukov, Christine Bengtsson, Andreas Jönsen, Solbritt Rantapää-Dahlqvist, Christopher Sjöwall, Anders Bengtsson, Iva Gunnarsson, Elisabet Svenungsson, Lars Rönnblom, Johanna K. Sandling, Ann‐Christine Syvänen
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-06988-1

Identification of an operon involved in fluoride resistance in Enterobacter cloacae FRM
Cited by: 11
Author(s): Xiaoqing Liu, Jian Tian, Lihui Liu, Tao Zhu, Xiaoxia Yu, Xiaoyu Chu, Bin Yao, Ningfeng Wu, Yanting Fan
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-07070-6

GFusion: an Effective Algorithm to Identify Fusion Genes from Cancer RNA-Seq Data
Cited by: 9
Author(s): Jian Zhao, Qi Chen, Jing Wu, Ping Han, Xiaofeng Song
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-017-08348-5

STAT3-induced long noncoding RNAs in multiple myeloma cells display different properties in cancer
Cited by: 25
Author(s): Stefanie Petrou Binder, Nadine Hösler, Diana Riedel, Ivonne Zipfel, Tilo Buschmann, Christoph Kämpf, Kristin Reiche, Renate Burger, Martin Gramatzki, Jörg Hackermüller, Peter F. Stadler, Friedemann Horn
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-020-71002-0

Global identification of a marine diatom long noncoding natural antisense transcripts (NATs) and their response to phosphate fluctuations
Cited by: 13
Author(s): Maria Helena Cruz de Carvalho, Chris Bowler
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-71968-x

Identification of effector candidate genes of Rhizoctonia solani AG-1 IA expressed during infection in Brachypodium distachyon
Cited by: 4
Author(s): Sobhy S. H. Abdelsalam, Yusuke Kouzai, Megumi Watanabe, Komaki Inoue, Hidenori Matsui, Mikihiro Yamamoto, Yuki Ichinose, Kazuhiro Toyoda, Seiji Tsuge, Keiichi Mochida, Yoshiteru Noutoshi
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-71701-8

Humic acid enhances heat stress tolerance via transcriptional activation of Heat-Shock Proteins in Arabidopsis
Cited by: 28
Author(s): Joon‐Yung Cha, Sang-Ho Kang, Imdad Ali, Sang Cheol Lee, Myung Geun Ji, Song Yi Jeong, Gyeong-Im Shin, Min Gab Kim, Jong-Rok Jeon, Woe‐Yeon Kim
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-020-73713-w

Rosettes integrity protects Plasmodium vivax of being phagocytized
Cited by: 13
Author(s): Letusa Albrecht, Stefanie Costa Pinto Lopes, Ana Beatriz Iung Enembreck da Silva, Vanessa Carneiro Barbosa, Rodrigo Pm de Almeida, André Machado Siqueira, Juliana Almeida Leite, Najara Bittencourt, Hellen Geremias dos Santos, Catarina Bourgard, Luiz Fernando Cardoso Garcia, Ana Carolina Andrade Vitor Kayano, Irene S. Soares, Bruce Russell, Laurent Rénia, Marcus Lacerda, Fabio T. M. Costa
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76076-4

Vimentin protects differentiating stem cells from stress
Cited by: 31
Author(s): Sundararaghavan Pattabiraman, Gajendra Kumar Azad, Triana Amen, Shlomi Brielle, Jung Eun Park, Siu Kwan Sze, Eran Meshorer, Daniel Kaganovich
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-74852-w

Identification and dereplication of endophytic Colletotrichum strains by MALDI TOF mass spectrometry and molecular networking
Cited by: 9
Author(s): Morgane Barthélémy, Vincent Guérineau, Grégory Genta‐Jouve, Mélanie Roy, Jérôme Chave, Régis Guillot, Léonie Pellissier, Jean‐Luc Wolfender, Didier Stien, Véronique Éparvier, David Touboul
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-76519-y

Gene duplication, rather than epigenetic changes, drives FGF4 overexpression in KIT/PDGFRA/SDH/RAS-P WT GIST
Cited by: 8
Author(s): Milena Urbini, Annalisa Astolfi, Valentina Indio, Margherita Nannini, Angela Schipani, Maria Giulia Bacalini, Sabrina Angelini, Gloria Ravegnini, Giovanni Calice, Massimo Del Gaudio, Paola Secchiero, Paola Ulivi, Elisa Gruppioni, Maria Abbondanza Pantaleo
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-77604-y

Effects of dietary n-3-PUFA supplementation, post-insemination plane of nutrition and pregnancy status on the endometrial transcriptome of beef heifers
Cited by: 4
Author(s): Carla Surlis, Paul Cormican, Sinéad M. Waters, Patrick Lonergan, Kate Keogh, David Noel Doyle, David A. Kenny
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-020-79197-y

Effects of activation of the LINE-1 antisense promoter on the growth of cultured cells
Cited by: 3
Author(s): Takeshi Honda, Yuki Nishikawa, Kensuke Nishimura, Da Teng, Kazuhiro Takemoto, Keiji Ueda
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-021-83162-8

Comparative analysis of the transcriptomes of two rice subspecies during domestication
Cited by: 5
Author(s): Hongbo Pang, Qiang Chen, Yueying Li, Ze Wang, Longkun Wu, Qing Yang, Xiaoming Zheng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-83152-w

Using antisense oligonucleotides for the physiological modulation of the alternative splicing of NF1 exon 23a during PC12 neuronal differentiation
Cited by: 3
Author(s): Josep Biayna, Helena Mazuelas, Bernat Gel, Ernest Terribas, Gabrijela Dumbović, Inma Rosas, Juana Fernández‐Rodríguez, Ignacio Blanco, Elisabeth Castellanos, Meritxell Carrió, Conxi Lázaro, Eduard Serra
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-84444-x

Adventitial delivery of nanoparticles encapsulated with 1α, 25-dihydroxyvitamin D3 attenuates restenosis in a murine angioplasty model
Cited by: 5
Author(s): Chuanqi Cai, Sreenivasulu Kilari, Chunrong Zhao, Avishek Singh, Michael L. Simeon, Avanish Misra, Yiqing Li, Edwin A. Takahashi, Rajiv Kumar, Sanjay Misra
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-85245-y

Genome-wide transcriptome profiling uncovers differential miRNAs and lncRNAs in ovaries of Hu sheep at different developmental stages
Cited by: 13
Author(s): Samina Shabbir, Prerona Boruah, Lijuan Xie, Muhammad Fakhar‐e‐Alam Kulyar, Mohsin Nawaz, Salsabeel Yousuf, Tianyi Liu, Farhat Jabeen, Xiangyang Miao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87054-9

An EAV-HP insertion in the promoter region of SLCO1B3 has pleiotropic effects on chicken liver metabolism based on the transcriptome and proteome analysis
Cited by: 2
Author(s): Jianfei Chen, Guoying Hua, Deguo Han, Xinyue Zheng, Xianggui Dong, Shuxiang Wang, Junjiang Long, Zhangqian Zheng, Ailing Wang, Jiankui Wang, Xiaotong Wang, Xuemei Deng
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-88055-4

Transcriptome analysis identifies differentially expressed genes in the progenies of a cross between two low phytic acid soybean mutants
Cited by: 4
Author(s): Hangxia Jin, Xiaomin Yu, Qinghua Yang, Xujun Fu, Fengjie Yuan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-87784-w

Comparative transcriptome analysis of cells from different areas reveals ROS responsive mechanism at sclerotial initiation stage in Morchella importuna
Cited by: 6
Author(s): Qizheng Liu, Guangcun He, Jinkang Wei, Caihong Dong
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-91154-x

Transcriptomic landscape of early age onset of colorectal cancer identifies novel genes and pathways in Indian CRC patients
Cited by: 16
Author(s): Manish Pratap Singh, Suresh Rai, Nand Kumar Singh, Sameer Srivastava
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-92282-0

Long-chain saturated fatty acids in breast milk are associated with the pathogenesis of atopic dermatitis via induction of inflammatory ILC3s
Cited by: 9
Author(s): Weng Sheng Kong, Naohiro Tsuyama, Hiroko Inoue, Yun Guo, Sho Mokuda, Asako Nobukiyo, Nobuhiro Nakatani, Fumiya Yamaide, Taiji Nakano, Yoichi Kohno, Kazutaka Ikeda, Yumiko Nakanishi, Hiroshi Ohno, Makoto Arita, Naoki Shimojo, Morio Kanno
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-021-94529-2

BCG therapy is associated with long-term, durable induction of Treg signature genes by epigenetic modulation
Cited by: 9
Author(s): Ryan C Keefe, Hiroyuki Takahashi, Lý Thị Trần, Kacie J. Nelson, Nathan Ng, Willem M. Kühtreiber, Denise L. Faustman
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-97712-7

Toward enhanced catalytic activity of magnetic nanoparticles integrated into 3D reduced graphene oxide for heterogeneous Fenton organic dye degradation
Cited by: 10
Author(s): Fatemeh Sadegh, Nikolaos Politakos, Estíbaliz González de San Román, Oihane Sánz, Ali Reza Modarresi‐Alam, Radmila Tomovská
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-97787-2

Empagliflozin maintains capillarization and improves cardiac function in a murine model of left ventricular pressure overload
Cited by: 15
Author(s): Masaaki Nakao, Ippei Shimizu, Goro Katsuumi, Yohko Yoshida, Masayoshi Suda, Yuka Hayashi, Ryutaro Ikegami, Yu‐Chun Hsiao, Shujiro Okuda, Tomoyoshi Soga, Tohru Minamino
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-98544-1

Prognostic association of starvation-induced gene expression in head and neck cancer
Cited by: 3
Author(s): Mareomi Hamada, Hiroaki Inaba, Kyoko Nishiyama, Sho Yoshida, Yoshiaki Yura, Michiyo Matsumoto‐Nakano, Narikazu Uzawa
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-021-99157-4

Interferon-inducible protein, IFIX, has tumor-suppressive effects in oral squamous cell carcinoma
Cited by: 3
Author(s): Shan Wang, Fang Li, Haojun Fan
Software Mentions: 1
Published: about 5 years ago

10.1155/2014/594579

Transcriptome Sequencing in a Tibetan Barley Landrace with High Resistance to Powdery Mildew
Cited by: 26
Author(s): Xingquan Zeng, Xiaomei Luo, Yulin Wang, Qijun Xu, Lijun Bai, Hongjun Yuan, Nyima Tashi
Software Mentions: 1
Published: almost 13 years ago

10.1038/s41392-018-0030-9

TdIF1: a putative oncogene in NSCLC tumor progression
Cited by: 11
Author(s): Yujuan Zhang, Zhigang Wang, Yanqing Huang, Muying Ying, Yifan Wang, Juan Xiong, Qi Liu, Fan Cao, Rakesh Kumar Joshi, Yanling Liu, Derong Xu, Meng Zhang, Keng Yuan, Nan Zhou, James Koropatnick, Wei‐Ping Min
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41392-020-00273-w

Rab22a-NeoF1: a promising target for osteosarcoma patients with lung metastasis
Cited by: 5
Author(s): Kai Xie, Xinyi Zhang, Yongguang Tao
Software Mentions: 1
Published: about 6 years ago

10.1038/s41392-021-00713-1

AHR mediates the aflatoxin B1 toxicity associated with hepatocellular carcinoma
Cited by: 32
Author(s): Qing Zhu, Yarui Ma, Junbo Liang, Zhewen Wei, Mo Li, Ying Zhang, Mei Liu, Huan He, Chunfeng Qu, Jianqiang Cai, Xiaobing Wang, Yi‐Xin Zeng, Yuchen Jiao
Software Mentions: 1
Published: about 5 years ago

10.1186/1758-907X-3-9

Strand-specific libraries for high throughput RNA sequencing (RNA-Seq) prepared without poly(A) selection
Cited by: 121
Author(s): Zhao Zhang, William E. Theurkauf, Zhiping Weng, Phillip D. Zamore
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13395-017-0122-1

Linkages between changes in the 3D organization of the genome and transcription during myotube differentiation in vitro
Cited by: 44
Author(s): Malina D. Doynova, James F. Markworth, David Cameron‐Smith, Mark H. Vickers, Justin M. O’Sullivan
Software Mentions: 1
Published: over 9 years ago

10.1186/s13395-018-0156-z

The complexity of titin splicing pattern in human adult skeletal muscles
Cited by: 48
Author(s): Marco Savarese, Per Harald Jonson, Sanna Huovinen, Lars Paulín, Petri Auvinen, Bjarne Udd, Peter Hackman
Software Mentions: 1
Published: over 8 years ago

10.1016/j.stemcr.2013.09.005

Analysis of SOX2-Expressing Cell Populations Derived from Human Pluripotent Stem Cells
Cited by: 30
Author(s): David A. Brafman, Noel Moya, Stephanie Allen-Soltero, Thomas Fellner, Megan Robinson, Zoë L. McMillen, Terry Gaasterland, Karl Willert
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.stemcr.2018.01.002

Comparison of Non-human Primate versus Human Induced Pluripotent Stem Cell-Derived Cardiomyocytes for Treatment of Myocardial Infarction
Cited by: 43
Author(s): Xin Zhao, Haodong Chen, Dan Xiao, Huaxiao Yang, Ilanit Itzhaki, Xulei Qin, Tony Chour, Aitor Aguirre, Kim A. Lehmann, Young-Kyun Kim, Praveen Shukla, Alexandra Holmström, Joe Z. Zhang, Yan Zhuge, B Ndoye, Mingtao Zhao, Evgenios Neofytou, Wolfram‐Hubertus Zimmermann, Mohit Jain, Joseph C. Wu
Software Mentions: 1
Published: over 8 years ago

10.1016/j.stemcr.2017.09.012

Oocyte-Specific Homeobox 1, Obox1, Facilitates Reprogramming by Promoting Mesenchymal-to-Epithelial Transition and Mitigating Cell Hyperproliferation
Cited by: 13
Author(s): Lijun Wu, You Wu, Bing Peng, Zhenzhen Hou, Yu Dong, Kang Chen, Mingyue Guo, Han Li, Xia Chen, Xiaochen Kou, Yanhong Zhao, Yan Bi, Yixuan Wang, Hong Wang, Rongrong Le, Lan Kang, Shaorong Gao
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.stemcr.2018.02.014

A Critical Role of TET1/2 Proteins in Cell-Cycle Progression of Trophoblast Stem Cells
Cited by: 35
Author(s): Stephanie Chrysanthou, Claire E. Senner, Laura Woods, Elena Fineberg, Hanneke Okkenhaug, Sarah Burge, Vicente Pérez-García, Myriam Hemberger
Software Mentions: 1
Published: over 8 years ago

10.1016/j.stemcr.2020.08.003

A p53-Dependent Checkpoint Induced upon DNA Damage Alters Cell Fate during hiPSC Differentiation
Cited by: 4
Author(s): Cara Bernadette Eldridge, Finian J. Allen, Alastair Crisp, Rodrigo A. Grandy, Ludovic Vallier, Julian E. Sale
Software Mentions: 1
Published: about 6 years ago

10.1186/s13287-018-0850-0

Three-dimensional printed PLA scaffold and human gingival stem cell-derived extracellular vesicles: a new tool for bone defect repair
Cited by: 179
Author(s): Francesca Diomede, Agnese Gugliandolo, Paolo Cardelli, Ilaria Merciaro, Valeria Ettorre, Tonino Traini, Rossella Bedini, Domenico Scionti, Alessia Bramanti, Antonio Nanci, Sergio Caputi, Antonella Fontana, Emanuela Mazzon, Oriana Trubiani
Software Mentions: 1
Published: over 8 years ago

10.1186/s13287-019-1437-0

Age-related transcriptome changes in Sox2+ supporting cells in the mouse cochlea
Cited by: 62
Author(s): Cheng Cheng, Yunfeng Wang, Luo Guo, Xiaoling Lü, Weijie Zhu, Muhammad Waqas, Liyan Zhang, Ling Lü, Junyan Gao, Mingliang Tang, Fangyi Chen, Xia Gao, Huawei Li, Renjie Chai
Software Mentions: 1
Published: almost 7 years ago

10.1002/stem.2102

A Role for MOSPD1 in Mesenchymal Stem Cell Proliferation and Differentiation
Cited by: 8
Author(s): Madina Kara, Richard Axton, Mike Jackson, Sahar Ghaffari, Katrin Buerger, Alistair J. Watt, Anne Marion Taylor, Brigid Orr, W. Reef Hardy, Bruno Péault, Lesley M. Forrester
Software Mentions: 1
Published: about 11 years ago

10.1155/2016/1801340

Effects on Proliferation and Differentiation of Human Umbilical Cord-Derived Mesenchymal Stem Cells Engineered to Express Neurotrophic Factors
Cited by: 3
Author(s): Yi Wang, Youguo Ying, Xiaoyan Cui
Software Mentions: 1
Published: almost 11 years ago

10.1155/2018/4809673

Developmental Pathways Pervade Stem Cell Responses to Evolving Extracellular Matrices of 3D Bioprinted Microenvironments
Cited by: 0
Author(s): Quyen Tran, Visar Ajeti, Brian T. Freeman, Paul J. Campagnola, Brenda M. Ogle
Software Mentions: 1
Published: almost 9 years ago

10.1155/2019/6461580

Activator Protein-1 Transcriptional Activity Drives Soluble Micrograft-Mediated Cell Migration and Promotes the Matrix Remodeling Machinery
Cited by: 3
Author(s): Martina Balli, Jonathan Sai-Hong Chui, Paraskevi Athanasouli, Willy Antoni Abreu de Oliveira, Youssef El Laithy, Maurilio Sampaolesi, Frederic Lluı́s
Software Mentions: 1
Published: almost 7 years ago

10.1155/2020/8845635

Metabolic Syndrome Alters the Cargo of Mitochondria-Related microRNAs in Swine Mesenchymal Stem Cell-Derived Extracellular Vesicles, Impairing Their Capacity to Repair the Stenotic Kidney
Cited by: 11
Author(s): Rahele A. Farahani, Xiang Yang Zhu, Hui Tang, Kyra L. Jordan, Amir Lerman, Lilach O. Lerman, Alfonso Eirin
Software Mentions: 1
Published: almost 6 years ago

10.1155/2021/8818356

Human ES Cell Culture Conditions Fail to Preserve the Mouse Epiblast State
Cited by: 1
Author(s): A S Devika, Anna Montebaur, S. Saravanan, Raghu Bhushan, Frank‐Thomas Koch, Smita Sudheer
Software Mentions: 1
Published: over 5 years ago

10.1007/s00122-015-2627-5

Haplotype divergence and multiple candidate genes at Rphq2, a partial resistance QTL of barley to Puccinia hordei
Cited by: 6
Author(s): Freddy Kuok San Yeo, Y Wang, Tereza Vozábová, Cécile Huneau, Philippe Leroy, Boulos Chalhoub, Xuebin Qi, Rients E. Niks, Thierry C. Marcel
Software Mentions: 1
Published: almost 11 years ago

10.7150/thno.36338

CapG promotes resistance to paclitaxel in breast cancer through transactivation of PIK3R1/P50
Cited by: 33
Author(s): Yayun Chi, Jian Xue, Sheng Huang, Bingqiu Xiu, Yonghui Su, Wei Wang, Rong Guo, Lei Wang, Lun Li, Zhi‐Ming Shao, Wei Jin, Zhao-Hui Wu, Jiong Wu
Software Mentions: 1
Published: almost 8 years ago

10.7150/thno.36930

Macrophage MSR1 promotes BMSC osteogenic differentiation and M2-like polarization by activating PI3K/AKT/GSK3β/β-catenin pathway
Cited by: 113
Author(s): Zhao Sj, Fanqi Kong, Jie Jian, Qing Li, Hao Líu, An-Di Xu, Yaqing Yang, Bin Jiang, Dongdong Wang, Zhongqiu Zhou, Pengyu Tang, Jian Chen, Qian Wang, Zheng Zhou, Qi Chen, Guoyong Yin, Hanwen Zhang, Jin Fan
Software Mentions: 1
Published: almost 7 years ago

10.7150/thno.42087

A S100A14-CCL2/CXCL5 signaling axis drives breast cancer metastasis
Cited by: 35
Author(s): Xukun Li, Minjie Wang, Tongyang Gong, Xuemeng Lei, Ting Hu, Maoqing Tian, Fang Ding, Fei Ma, Hongyan Chen, Zhihua Liu
Software Mentions: 1
Published: almost 7 years ago

10.7150/thno.44962

Dysregulated expression of monoacylglycerol lipase is a marker for anti-diabetic drug metformin-targeted therapy to correct impaired neurogenesis and spatial memory in Alzheimer's disease
Cited by: 19
Author(s): Charvi Syal, Jayasankar Kosaraju, Laura Hamilton, Anne Aumont, Alphonse Chu, Sailendra Nath Sarma, Jacob Stephen Thomas, Matthew Seegobin, F. Jeffrey Dilworth, Liang He, Fredric E. Wondisford, R. Zimmermann, Martin Parent, Karl J.L. Fernandes, Jing Wang
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.toxrep.2020.05.002

Novel hepatotoxicity biomarkers of extracellular vesicle (EV)-associated miRNAs induced by CCl4
Cited by: 7
Author(s): Ryuichi Ono, Yusuke Yoshioka, Yusuke Furukawa, Mie Naruse, Makiko Kuwagata, Takahiro Ochiya, Satoshi Kitajima, Yoko Hirabayashi
Software Mentions: 1
Published: almost 7 years ago

10.3390/toxics6020021

Transcriptomic Analysis of Gonadal Adipose Tissue in Male Mice Exposed Perinatally to 2,2′,4,4′-Tetrabromodiphenyl Ether (BDE-47)
Cited by: 11
Author(s): Aser Abrha, Alexander Suvorov
Software Mentions: 1
Published: over 8 years ago

10.3390/toxins10070270

The Antioxidant Gallic Acid Inhibits Aflatoxin Formation in Aspergillus flavus by Modulating Transcription Factors FarB and CreA
Cited by: 58
Author(s): Xixi Zhao, Qing-Qing Zhi, Jie-Ying Li, Nancy P. Keller, Zhu‐Mei He
Software Mentions: 1
Published: over 8 years ago

10.1186/s40035-017-0082-8

Mesencephalic astrocyte-derived neurotrophic factor reduces cell apoptosis via upregulating HSP70 in SHSY-5Y cells
Cited by: 17
Author(s): Hui Sun, Ming Jiang, Xing Fu, Quan Cai, Jingxing Zhang, Yanxin Yin, Jia Guo, Lihua Yu, Yun Jiang, Yigang Liu, Liang Feng, Zhiyu Nie, Jianmin Fang, Lingjing Jin
Software Mentions: 1
Published: over 9 years ago

10.1038/tp.2015.45

DEGS2 polymorphism associated with cognition in schizophrenia is associated with gene expression in brain
Cited by: 21
Author(s): Kazutaka Ohi, Gianluca Ursini, M Li, Joo Heon Shin, T Ye, Q Chen, Ran Tao, Joel E. Kleinman, Thomas M. Hyde, Ryota Hashimoto, Daniel R. Weinberger
Software Mentions: 1
Published: over 11 years ago

10.1038/tp.2015.56

A molecular model for neurodevelopmental disorders
Cited by: 37
Author(s): Carolina Oliveira Gigek, E S Chen, Vanessa Kiyomi Ota, Gilles Maussion, Hong Peng, Kathryn Vaillancourt, Alpha Diallo, Juan Pablo López, Liam Crapper, Cristina Vasuta, G G Chen, Carl Ernst
Software Mentions: 1
Published: over 11 years ago

10.1038/tp.2017.47

Transcriptome sequencing study implicates immune-related genes differentially expressed in schizophrenia: new data and a meta-analysis
Cited by: 47
Author(s): Alan R. Sanders, Eugene Drigalenko, Jubao Duan, Winton Moy, Jessica Freda, Harald H.H. Göring, Pablo V. Gejman
Software Mentions: 1
Published: over 9 years ago

10.1038/s41398-021-01303-z

Pten is a key intrinsic factor regulating raphe 5-HT neuronal plasticity and depressive behaviors in mice
Cited by: 6
Author(s): Ling Chen, W. Gong, Cuiping Yang, Chan-Chan Shao, Naihao Song, Jia-Yin Chen, Libing Zhou, Kunshan Zhang, Siguang Li, Zhi‐Li Huang, Gal Richter‐Levin, Lin Xu, Yu‐Qiang Ding
Software Mentions: 1
Published: over 5 years ago

10.1007/s12975-015-0407-9

Intracerebral Hemorrhage and Ischemic Stroke of Different Etiologies Have Distinct Alternatively Spliced mRNA Profiles in the Blood: a Pilot RNA-seq Study
Cited by: 39
Author(s): Cheryl Dykstra-Aiello, Glen C. Jickling, Bradley P. Ander, Xinhua Zhan, DaZhi Z. Liu, Heather Hull, Miles Orantia, Carolyn Y. Ho, Boryana Stamova
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.00499

Overcoming mutation-based resistance to antiandrogens with rational drug design
Cited by: 340
Author(s): Minna Balbas, Michael J. Evans, David J. Hosfield, John Wongvipat, Vivek Arora, Philip A. Watson, Yu Chen, Geoffrey L. Greene, Yang Shen, Charles L. Sawyers
Software Mentions: 1
Published: over 13 years ago

10.7554/eLife.22707

Global analysis of gene expression reveals mRNA superinduction is required for the inducible immune response to a bacterial pathogen
Cited by: 41
Author(s): Kevin C. Barry, Nicholas T. Ingolia, Russell E. Vance
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.64593

Combinations of maternal-specific repressive epigenetic marks in the endosperm control seed dormancy
Cited by: 7
Author(s): Hikaru Sato, Juan Santos‐González, Claudia Köhler
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.04241

Decoding a neural circuit controlling global animal state in C. elegans
Cited by: 60
Author(s): Patrick Laurent, Zoltán Soltész, Geoffrey M. Nelson, Changchun Chen, Fausto Arellano‐Carbajal, Emmanuel D. Levy, Mario de Bono
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.31311

YTHDC1 mediates nuclear export of N6-methyladenosine methylated mRNAs
Cited by: 727
Author(s): Ian A. Roundtree, Guan‐Zheng Luo, Zijie Zhang, Wang Xiao, Tao Zhou, Yiquang Cui, Jiahao Sha, Xingxu Huang, Laura Guerrero, Phil Xie, Emily He, Bin Shen, Chuan He
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.58894

A limbic circuit selectively links active escape to food suppression
Cited by: 30
Author(s): Estefania P. Azevedo, Bowen Tan, Lisa E. Pomeranz, Violet Ivan, Robert N. Fetcho, Marc Schneeberger, Katherine R Doerig, Conor Liston, Jeffrey M. Friedman, Sarah A. Stern
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.28297

Resolving the prevalence of somatic transposition in Drosophila
Cited by: 54
Author(s): Christoph Daniel Treiber, Scott Waddell
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.22626

Toddler signaling regulates mesodermal cell migration downstream of Nodal signaling
Cited by: 23
Author(s): Megan L Norris, Andrea Pauli, James A. Gagnon, Nathan D. Lord, Katherine W. Rogers, Christian Mosimann, Leonard I. Zon, Alexander F. Schier
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.00924

A network of heterochronic genes including Imp1 regulates temporal changes in stem cell properties
Cited by: 105
Author(s): Jinsuke Nishino, Sun Jung Kim, Yuan Zhu, Hao Zhu, Sean J. Morrison
Software Mentions: 1
Published: almost 13 years ago

10.7554/eLife.56273

SynGAP isoforms differentially regulate synaptic plasticity and dendritic development
Cited by: 50
Author(s): Yasuhisa Araki, Ingie Hong, Timothy R Gamache, Shaowen Ju, Leonardo Collado‐Torres, Joo Heon Shin, Richard L. Huganir
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.46426

Antagonistic interaction between Ezh2 and Arid1a coordinates root patterning and development via Cdkn2a in mouse molars
Cited by: 13
Author(s): Junjun Jing, Jifan Feng, Jingyuan Li, Xia Han, Jinzhi He, Thach-Vu Ho, Jiahui Du, Xuedong Zhou, Mark M. Urata, Yang Chai
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.29677

RNG105/caprin1, an RNA granule protein for dendritic mRNA localization, is essential for long-term memory formation
Cited by: 42
Author(s): Kei Ichi Nakayama, Rie Ohashi, Yo Shinoda, Maya Yamazaki, Manabu Abe, Akihiro Fujikawa, Shuji Shigenobu, Akira Futatsugi, Masaharu Noda, Katsuhiko Mikoshiba, Teiichi Furuichi, Kenji Sakimura, Nobuyuki Shiina
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.52859

Phrenic-specific transcriptional programs shape respiratory motor output
Cited by: 10
Author(s): Alicia N Vagnozzi, Kiran Garg, Carola Dewitz, Matthew T. Moore, Jared M. Cregg, Lucie Jeannotte, Niccolò Zampieri, Lynn T. Landmesser, Polyxeni Philippidou
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.23242

TCF7L1 promotes skin tumorigenesis independently of β-catenin through induction of LCN2
Cited by: 19
Author(s): Amy T. Ku, Timothy M. Shaver, Ajay S Rao, Jeffrey Howard, Christine N. Rodriguez, Qi Miao, Gloria E. Garcia, Diep Le, Diane Yang, Malgorzata Borowiak, Daniel N. Cohen, Vida Chitsazzadeh, A. Hafeez Diwan, Kenneth Y. Tsai, Hoang Nguyen
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.02046

Essential role of lncRNA binding for WDR5 maintenance of active chromatin and embryonic stem cell pluripotency
Cited by: 171
Author(s): Yul W. Yang, Ryan A. Flynn, Yong Chen, Kun Qu, Biao Wan, Kevin C. Wang, Ming Lei, Howard Y. Chang
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.59459

Reciprocal interaction between mesenchymal stem cells and transit amplifying cells regulates tissue homeostasis
Cited by: 12
Author(s): Junjun Jing, Jifan Feng, Jinyuan Li, Hu Zhao, Thach-Vu Ho, Jinzhi He, Yuan Yuan, Tingwei Guo, Jiahui Du, Mark M. Urata, Paul T. Sharpe, Yang Chai
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.03528

Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq
Cited by: 260
Author(s): Julie L. Aspden, Ying Chen Eyre-Walker, Roger Phillips, Unum Amin, Muhammad Ali Mumtaz, Michèle Brocard, Juan-Pablo Couso
Software Mentions: 1
Published: about 12 years ago

10.7554/eLife.03913

Genetic basis of sRNA quantitative variation analyzed using an experimental population derived from an elite rice hybrid
Cited by: 11
Author(s): Jia Wang, Wen Yao, Dan Zhu, Weibo Xie, Qifa Zhang
Software Mentions: 1
Published: over 11 years ago

10.7554/eLife.08413

Generation of an expandable intermediate mesoderm restricted progenitor cell line from human pluripotent stem cells
Cited by: 25
Author(s): Nathan Kumar, James Richter, Josh Cutts, Kevin T. Bush, Cleber A. Trujillo, Sanjay K. Nigám, Terry Gaasterland, David A. Brafman, Karl Willert
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.40392

Wnt11 directs nephron progenitor polarity and motile behavior ultimately determining nephron endowment
Cited by: 42
Author(s): Lori L. O’Brien, Alexander N. Combes, Kieran M. Short, Nils O. Lindström, Peter H. Whitney, Luise A. Cullen‐McEwen, Adler Ju, Ahmed Abdelhalim, Odyssé Michos, John F. Bertram, Ian Smyth, Melissa H. Little, Andrew P. McMahon
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.23588

Discovery of novel determinants of endothelial lineage using chimeric heterokaryons
Cited by: 8
Author(s): Wing Tak Wong, Gianfranco Matrone, Xiaoyu Tian, Simion Alin Tomoiaga, Kin Fai Au, Shu Meng, Sayumi Yamazoe, Daniel Sieveking, Kaifu Chen, David M. Burns, James Chen, Helen M. Blau, John P. Cooke
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.01659

Tissue-resident natural killer (NK) cells are cell lineages distinct from thymic and conventional splenic NK cells
Cited by: 433
Author(s): Dorothy K. Sojka, Béatrice Plougastel-Douglas, Liping Yang, Melissa A. Pak-Wittel, Maxim N. Artyomov, Yulia Ivanova, Chao Zhong, Julie Chase, Paul B. Rothman, Jui‐Ling Yu, Joan Riley, Jinfang Zhu, Zhigang Tian, Wayne M. Yokoyama
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.48958

Region-specific regulation of stem cell-driven regeneration in tapeworms
Cited by: 11
Author(s): Tania Rozario, Edward B. Quinn, Jianbin Wang, Richard E. Davis, Phillip A. Newmark
Software Mentions: 1
Published: about 7 years ago

10.7554/eLife.30178

Independent manipulation of histone H3 modifications in individual nucleosomes reveals the contributions of sister histones to transcription
Cited by: 8
Author(s): Zhen Zhou, Yuting Liu, Li Ma, Ting Gong, Yanan Hu, Hongtao Li, Chen Cai, Lingli Zhang, Gang Wei, Jin-Qiu Zhou
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.45282

Fetal and trophoblast PI3K p110α have distinct roles in regulating resource supply to the growing fetus in mice
Cited by: 34
Author(s): Jorge López-Tello, Vicente Pérez-García, Jaspreet Khaira, Laura C. Kusinski, Wendy N. Cooper, Adam Andreani, Imogen Grant, Edurne Fernández de Liger, Brian Lam, Myriam Hemberger, Ionel Sandovici, Miguel Constância, Amanda N. Sferruzzi‐Perri
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.09991

Signaling cascades and the importance of moonlight in coral broadcast mass spawning
Cited by: 87
Author(s): Paulina Kaniewska, Shahar Alon, Sarit Karako-Lampert, Ove Hoegh‐Guldberg, Oren Levy
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.01201

The splicing regulator PTBP2 controls a program of embryonic splicing required for neuronal maturation
Cited by: 129
Author(s): Qin Li, Sika Zheng, A-Reum Han, Chia-Ho Lin, Peter Stoilov, Xiang‐Dong Fu, Douglas L. Black
Software Mentions: 1
Published: over 12 years ago

10.7554/eLife.05996

The Notch-mediated hyperplasia circuitry in Drosophila reveals a Src-JNK signaling axis
Cited by: 34
Author(s): Diana M. Ho, SK Pallavi, Spyros Artavanis‐Tsakonas
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.62209

The origins and consequences of UPF1 variants in pancreatic adenosquamous carcinoma
Cited by: 8
Author(s): Jacob T. Polaski, Dylan B. Udy, Luisa F. Escobar‐Hoyos, Gokce Askan, Steven D. Leach, Andrea Ventura, Ram Kannan, Robert K. Bradley
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.63060

Selective activation of FZD7 promotes mesendodermal differentiation of human pluripotent stem cells
Cited by: 12
Author(s): Diana Gumber, Myan Do, Neya Suresh Kumar, Pooja R Sonavane, Christina Wu, Luisjesus S. Cruz, Stephanie Grainger, Dennis A. Carson, Terry Gaasterland, Karl Willert
Software Mentions: 1
Published: almost 6 years ago

10.7554/eLife.10074

Paternally expressed imprinted genes establish postzygotic hybridization barriers in Arabidopsis thaliana
Cited by: 95
Author(s): Philip Wolff, Hua Jiang, Guifeng Wang, Juan Santos‐González, Claudia Köhler
Software Mentions: 1
Published: about 11 years ago

10.7554/eLife.51830

Phenotypic plasticity as a mechanism of cave colonization and adaptation
Cited by: 37
Author(s): Helena Bilandžija, Breanna Hollifield, Mireille Steck, Guanliang Meng, Mandy Ng, Andrew D. Koch, Romana Gračan, Helena Ćetković, Megan L. Porter, Kenneth J. Renner, William R. Jeffery
Software Mentions: 1
Published: over 6 years ago

Projects: pypi: TopHat

Science Score: 90/100

Bonuses:

Penalties:

Papers Mentioning TopHat 5,017