Ecosyste.ms: Papers

10.1038/srep08567

Genome-wide profiling of DNA methylation provides insights into epigenetic regulation of fungal development in a plant pathogenic fungus, Magnaporthe oryzae
Cited by: 92
Author(s): Junhyun Jeon, Jaeyoung Choi, Gir-Won Lee, Sook‐Young Park, Aram Huh, Ralph A. Dean, Yong-Hwan Lee
Software Mentions: 1
Published: over 9 years ago

10.1038/srep08790

Genome-wide DNA methylome analysis reveals epigenetically dysregulated non-coding RNAs in human breast cancer
Cited by: 55
Author(s): Yongsheng Li, Yunpeng Zhang, Shengli Li, Jianping Lu, Juan Chen, Yuan Wang, Yixue Li, Juan Xu, Xia Li
Software Mentions: 1
Published: over 9 years ago

10.1038/srep09170

ANGPTL2 increases bone metastasis of breast cancer cells through enhancing CXCR4 signaling
Cited by: 43
Author(s): Tetsuro Masuda, Motoyoshi Endo, Yutaka Yamamoto, Haruki Odagiri, Tsuyoshi Kadomatsu, Takayuki Nakamura, Hironori Tanoue, Hitoshi Ichikawa, Masaki Yugami, Keishi Miyata, Jun Morinaga, Haruki Horiguchi, Ikuyo Motokawa, Kazutoyo Terada, M. Morioka, Ichiro Manabe, Hirotaka Iwase, Hiroshi Mizuta, Yuichi Oike
Software Mentions: 1
Published: over 9 years ago

10.1038/srep10294

MicroRNA-23b Promotes Avian Leukosis Virus Subgroup J (ALV-J) Replication by Targeting IRF1
Cited by: 54
Author(s): Zhenhui Li, Biao Chen, Mei Feng, Hongjia Ouyang, Ming Zheng, Qiao Ye, Qinghua Nie, Xiquan Zhang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep10205

The pluripotency factor NANOG promotes the formation of squamous cell carcinomas
Cited by: 33
Author(s): Adelaida R. Palla, Daniela Piazzolla, Noelia Alcázar, Marta Cañamero, Osvaldo Graña, Gonzalo Goméz-López, Orlando Domı́nguez, Marta Dueñas, Jesús M. Paramio, Manuel Serrano
Software Mentions: 1
Published: over 9 years ago

10.1038/srep10651

Cellular microRNA miR-26a suppresses replication of porcine reproductive and respiratory syndrome virus by activating innate antiviral immunity
Cited by: 42
Author(s): Xiaojuan Jia, Yuhai Bi, Jing Li, Qing Xie, Hanchun Yang, Wenjun Liu
Software Mentions: 1
Published: over 9 years ago

10.1038/srep09737

Contrasting expression patterns of coding and noncoding parts of the human genome upon oxidative stress
Cited by: 58
Author(s): Antonis Giannakakis, Jingxian Zhang, Piroon Jenjaroenpun, Srikanth Nama, Norliyana Zainolabidin, Mei Yee Aau, Aliaksandr A. Yarmishyn, Candida Vaz, Anna V. Ivshina, Oleg V. Grinchuk, Mathijs Voorhoeve, Leah A. Vardy, Prabha Sampath, Vladimir A. Kuznetsov, Igor V. Kurochkin, Ernesto Guccione
Software Mentions: 1
Published: over 9 years ago

10.1038/srep11207

Non-coding RNAs derived from an alternatively spliced REST transcript (REST-003) regulate breast cancer invasiveness
Cited by: 10
Author(s): Nan Sook Lee, Oleg V. Evgrafov, Tade Souaiaia, Adrineh Bonyad, Jennifer Herstein, Joo Yeun Lee, Jihong Kim, Yan Ning, Marcos Sixto, Andrew C. Weitz, Heinz‐Josef Lenz, Kai Wang, James A. Knowles, Michael F. Press, Paul M. Salvaterra, K. Kirk Shung, Robert H. Chow
Software Mentions: 1
Published: over 9 years ago

10.1038/srep12335

Robust gene expression and mutation analyses of RNA-sequencing of formalin-fixed diagnostic tumor samples
Cited by: 54
Author(s): Stefan Graw, Richard Meier, Kay Minn, Clark Bloomer, Andrew K. Godwin, Brooke L. Fridley, Anda Vlad, Peter Beyerlein, Jeremy Chien
Software Mentions: 1
Published: over 9 years ago

10.1038/srep12922

The human papillomavirus (HPV) E7 protein antagonises an Imiquimod-induced inflammatory pathway in primary human keratinocytes
Cited by: 29
Author(s): Kathryn H. Richards, Christopher W. Wasson, Oliver Watherston, Rosella Doble, G. Eric Blair, Miriam Wittmann, Andrew Macdonald
Software Mentions: 1
Published: over 9 years ago

10.1038/srep13074

Integrated analysis of miRNA/mRNA network in placenta identifies key factors associated with labor onset of Large White and Qingping sows
Cited by: 12
Author(s): Huanan Li, Bin Wu, Junnan Geng, Jiawei Zhou, Rong Zheng, Jin Choul Chai, Fenge Li, Jian Peng, Siwen Jiang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep13059

Transcriptomic Analysis of the Regulation of Rhizome Formation in Temperate and Tropical Lotus (Nelumbo nucifera)
Cited by: 89
Author(s): Mei Yang, Liming Zhu, Cheng Pan, Liming Xu, Yanling Liu, Weidong Ke, Pingfang Yang
Software Mentions: 1
Published: over 9 years ago

10.1038/srep13208

SRSF1 and hnRNP H antagonistically regulate splicing of COLQ exon 16 in a congenital myasthenic syndrome
Cited by: 31
Author(s): Mohammad Alinoor Rahman, Yoshiteru Azuma, Farhana Nasrin, Jun Takeda, Mohammad Nazim, Khalid Ahsan, Akio Matsubara, Andrew G. Engel, Kinji Ohno
Software Mentions: 1
Published: over 9 years ago

10.1038/srep13750

Whole genome and transcriptome sequencing of matched primary and peritoneal metastatic gastric carcinoma
Cited by: 65
Author(s): Jie Zhang, Jiawen Huang, Yixuan Chen, Fei Yuan, H. Zhang, Feng Yan, M. J. Wang, G. Wang, Mingwan Su, Guankun Lu, Yi Huang, Hong Jie Dai, Jun Ji, J. N. Zhang, Yannan Jiang, S. J. Chen, Zhenggang Zhu, Yingyan Yu
Software Mentions: 1
Published: about 9 years ago

10.1038/srep13885

In vivo Monitoring of Transcriptional Dynamics After Lower-Limb Muscle Injury Enables Quantitative Classification of Healing
Cited by: 22
Author(s): Carlos A. Aguilar, Anna Shcherbina, Darrell O. Ricke, Ramona Pop, Christopher T. Carrigan, Casey A. Gifford, Maria L. Urso, Melissa A. Kottke, Alexander Meissner
Software Mentions: 1
Published: about 9 years ago

10.1038/srep15184

The conservation and signatures of lincRNAs in Marek’s disease of chicken
Cited by: 41
Author(s): Yanghua He, Yi Ding, Fei Zhan, Huanmin Zhang, Bo Han, Gangqing Hu, Keji Zhao, Ning Yang, Ying Yu, Mao Li, Jiuzhou Song
Software Mentions: 1
Published: about 9 years ago

10.1038/srep16132

Integrated analysis of microRNA and mRNA expression profiles in abdominal adipose tissues in chickens
Cited by: 54
Author(s): Huang Hu, R. R. Liu, Guiping Zhao, Q.H. Li, Maiqing Zheng, J. J. Zhang, S. F. Li, Ling Zhong, Jian Kang Wen
Software Mentions: 1
Published: about 9 years ago

10.1038/srep17383

RBFOX3/NeuN is Required for Hippocampal Circuit Balance and Function
Cited by: 50
Author(s): Hanying Wang, Pei-Fen Hsieh, De-Fong Huang, Pey-Shyuan Chin, Chih-Hsuan Chou, Chun-Che Tung, Shin-Yuan Chen, Li-Jen Lee, Susan Shur‐Fen Gau, Hsiang‐Po Huang
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep19007

Comparative transcriptomic analysis uncovers the complex genetic network for resistance to Sclerotinia sclerotiorum in Brassica napus
Cited by: 113
Author(s): Jian Wu, Qing Zhao, Qingyong Yang, Han Liu, Qingyuan Li, Xinqi Yi, Yan Cheng, Liang Guo, Chuchuan Fan, Yongming Zhou
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep19349

Comparative transcriptome analysis highlights the crucial roles of photosynthetic system in drought stress adaptation in upland rice
Cited by: 53
Author(s): Zhengfeng Zhang, Yuanyuan Li, Benze Xiao
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20270

Transcriptional comparison of human induced and primary midbrain dopaminergic neurons
Cited by: 39
Author(s): Ninuo Xia, Pengbo Zhang, Fang Fang, Zhengyuan Wang, Megan Rothstein, Benjamin Angulo, Rosaria Chiang, James Taylor, Renee A. Reijo Pera
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20376

Negative regulation of initial steps in skeletal myogenesis by mTOR and other kinases
Cited by: 5
Author(s): Raphael A. Wilson, Jing Liu, Lin Xu, James Annis, Sara Helmig, Gregory L. Moore, Casey Timmerman, Carla Grandori, Yanbin Zheng, Stephen X. Skapek
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20715

Functional analysis of long intergenic non-coding RNAs in phosphate-starved rice using competing endogenous RNA network
Cited by: 58
Author(s): Xiwen Xu, Xionghui Zhou, Ruiru Wang, Wenlei Peng, Yue An, Lingling Chen
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep20758

Histological and transcriptome analyses of testes from Duroc and Meishan boars
Cited by: 28
Author(s): Haisheng Ding, Yan Luo, Min Liu, Jiazhu Huang, Dequan Xu
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21623

Expansion and stress responses of AP2/EREBP superfamily in Brachypodium Distachyon
Cited by: 60
Author(s): Lihong Chen, Jiapeng Han, Xianwen Deng, Shenglong Tan, Lili Li, Lun Li, Jian Zhou, Hai Peng, Guangxiao Yang, Guangyuan He, Weixiong Zhang
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21600

Fire blight disease reactome: RNA-seq transcriptional profile of apple host plant defense responses to Erwinia amylovora pathogen infection
Cited by: 32
Author(s): Tim Kamber, Jan P. Buchmann, Joël F. Pothier, Theo H. M. Smits, Thomas Wicker, Brion Duffy
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep21250

L-Lactate protects neurons against excitotoxicity: implication of an ATP-mediated signaling cascade
Cited by: 74
Author(s): Pascal Jourdain, Igor Allaman, K. Rothenfusser, Hubert Fiumelli, Pierre Marquet, Pierre J. Magistretti
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep22241

New insights into virulence mechanisms of rice pathogen Acidovorax avenae subsp. avenae strain RS-1 following exposure to ß-lactam antibiotics
Cited by: 7
Author(s): Bin Li, Mengyu Ge, Yang Zhang, Li Wang, Muhammad Ibrahim, Yanli Wang, Guochang Sun, Gongyou Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/srep23526

Microbial oil-degradation under mild hydrostatic pressure (10 MPa): which pathways are impacted in piezosensitive hydrocarbonoclastic bacteria?
Cited by: 40
Author(s): Alberto Scoma, Marta Barbato, Emma Hernandez-Sanabria, Francesca Mapelli, Daniele Daffonchio, Sara Borin, Nico Boon
Software Mentions: 1
Published: over 8 years ago

10.1038/srep09698

Nelfinavir and Nelfinavir Analogs Block Site-2 Protease Cleavage to Inhibit Castration-Resistant Prostate Cancer
Cited by: 48
Author(s): Min Guan, Leila Su, Yate-Ching Yuan, Haiqing Li, Warren Chow
Software Mentions: 1
Published: over 9 years ago

10.1038/srep24066

Ethylene positively regulates cold tolerance in grapevine by modulating the expression of ETHYLENE RESPONSE FACTOR 057
Cited by: 89
Author(s): Xiaoming Sun, Tingting Zhao, Shuheng Gan, Xiaobo Ren, Linchuan Fang, Sospeter Karanja Karungo, Yi Wang, Liang Chen, Shaohua Li, H. P. Xin
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24604

Genome-wide transcriptomic analysis reveals correlation between higher WRKY61 expression and reduced symptom severity in Turnip crinkle virus infected Arabidopsis thaliana
Cited by: 21
Author(s): Ruimin Gao, Peng Liu, Yuhan Yong, Sek‐Man Wong
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24611

CD14 in the TLRs signaling pathway is associated with the resistance to E. coli F18 in Chinese domestic weaned piglets
Cited by: 20
Author(s): Zhengchang Wu, Ying Liu, Wende Dong, Guoqiang Zhu, Shenglong Wu, Wenbin Bao
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24894

Transcriptome analysis of interactions between silkworm and cytoplasmic polyhedrosis virus
Cited by: 25
Author(s): Liang Jiang, Zhengwen Peng, Youbing Guo, Tingcai Cheng, Huizhen Guo, Qiang Sun, Ching-Hua Huang, Ping Zhao, Qingyou Xia
Software Mentions: 1
Published: over 8 years ago

10.1038/srep25536

Population transcriptomics uncovers the regulation of gene expression variation in adaptation to changing environment
Cited by: 31
Author(s): Qin Xu, Caiyun Zhu, Yangyang Fan, Zhihong Song, Shilai Xing, Wei Liu, Juan Yan, Tao Su
Software Mentions: 1
Published: over 8 years ago

10.1038/srep26093

The Essential Role of H19 Contributing to Cisplatin Resistance by Regulating Glutathione Metabolism in High-Grade Serous Ovarian Cancer
Cited by: 111
Author(s): Zhong Zheng, Hong Xu, Shasha Suo, Xin Xu, Maowei Ni, Linhui Gu, Wei Chen, Liangyan Wang, Ye Zhao, Bing Teng, Yuejin Hua
Software Mentions: 1
Published: over 8 years ago

10.1038/srep26350

Identification of host genes leading to West Nile virus encephalitis in mice brain using RNA-seq analysis
Cited by: 36
Author(s): Mukesh Kumar, Mahdi Belcaid, Vivek R. Nerurkar
Software Mentions: 1
Published: over 8 years ago

10.1038/srep26828

Transcriptome analysis of Streptococcus pneumoniae treated with the designed antimicrobial peptides, DM3
Cited by: 29
Author(s): Cheng Foh Le, Ranganath Gudimella, Rozaimi Mohamad Razali, Rishya Manikam, Shamala Devi Sekaran
Software Mentions: 1
Published: over 8 years ago

10.1038/srep28159

Loss of Free Fatty Acid Receptor 2 leads to impaired islet mass and beta cell survival
Cited by: 30
Author(s): Stephanie R. Villa, Medha Priyadarshini, Miles Fuller, Tanya Bhardwaj, Michael Brodsky, Anthony R. Angueira, Rockann E. Mosser, Lindsey Carboneau, Sarah A. Tersey, Helena Mancebo, Annette Gilchrist, Raghavendra G. Mirmira, Maureen Gannon, Brian T. Layden
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-018-34277-y

Deep sequencing and miRNA profiles in alcohol-induced neuroinflammation and the TLR4 response in mice cerebral cortex
Cited by: 35
Author(s): Juan R. Ureña‐Peralta, Silvia Alfonso-Loeches, C. M. Cuesta-Diaz, Francisco García‐García, Consuelo Guerri
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34315-9

The Beta-adrenergic agonist, Ractopamine, increases skeletal muscle expression of Asparagine Synthetase as part of an integrated stress response gene program
Cited by: 11
Author(s): David M. Brown, Kevin J. Ryan, Zoe Daniel, Molebeledi Horatius Dambe Mareko, Richard Talbot, Joanna Moreton, Tom Giles, Richard D. Emes, Charlie Hodgman, Tim Parr, John M. Brameld
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34320-y

Exogenous Pi supplementation improved the salt tolerance of maize (Zea mays L.) by promoting Na+ exclusion
Cited by: 19
Author(s): Yong Sun, Chunhua Mu, Haixue Zheng, Shouping Lu, Hua Zhang, Xuecai Zhang, Xia Liu
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-34318-6

Drought-induced susceptibility for Cenangium ferruginosum leads to progression of Cenangium-dieback disease in Pinus koraiensis
Cited by: 13
Author(s): Minji Ryu, Ratnesh Chandra Mishra, Junhyun Jeon, Sun Keun Lee, Hyeun‐Jong Bae
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-35202-z

Expression profiling of lncRNAs and mRNAs reveals regulation of muscle growth in the Pacific abalone, Haliotis discus hannai
Cited by: 8
Author(s): Jianfang Huang, Xuan Luo, Liting Zeng, Zekun Huang, Meng Huang, You Wang, Caihuan Ke
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-018-36304-4

Primula vulgaris (primrose) genome assembly, annotation and gene expression, with comparative genomics on the heterostyly supergene
Cited by: 33
Author(s): Jonathan M. Cocker, Jonathan Wright, Jinhong Li, David Swarbreck, Sarah Dyer, Mario Cáccamo, Philip M. Gilmartin
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-36484-z

Thermopriming reprograms metabolic homeostasis to confer heat tolerance
Cited by: 58
Author(s): Natalia Serrano, Lexiang Yu, Ahmed Bahieldin, Magdy M. Mahfouz
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-36693-6

Mitochondrial and chloroplast genomes provide insights into the evolutionary origins of quinoa (Chenopodium quinoa Willd.)
Cited by: 25
Author(s): Peter J. Maughan, Lindsay Chaney, Damien J. Lightfoot, Brian J. Cox, Mark Tester, Eric N. Jellen, David E. Jarvis
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-36607-6

Smooth Muscle Transcriptome Browser: offering genome-wide references and expression profiles of transcripts expressed in intestinal SMC, ICC, and PDGFRα+ cells
Cited by: 15
Author(s): Adrienne Breland, Se Eun Ha, Brian G. Jorgensen, Byungchang Jin, Treg A. Gardner, Kenton M. Sanders, Seungil Ro
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-37124-2

RgsD negatively controls development, toxigenesis, stress response, and virulence in Aspergillus fumigatus
Cited by: 15
Author(s): Young Kim, Minwoo Lee, Sang-Cheol Jun, Youngjoon Choi, Jae‐Hyuk Yu, Kwang‐Soo Shin
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-38398-2

Transcriptional responses of wheat roots inoculated with Arthrobacter nitroguajacolicus to salt stress
Cited by: 71
Author(s): Maryam Safdarian, Hossein Askari, Vahid Shariati J, Ghorbanali Nematzadeh
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41598-018-37697-y

Comparative transcriptome analysis reveals differentially expressed genes related to the tissue-specific accumulation of anthocyanins in pericarp and aleurone layer for maize
Cited by: 24
Author(s): Tingchun Li, Wei Zhang, Huaying Yang, Qing Dong, Jie Ren, Honghong Fan, Xin Zhang, Yingbing Zhou
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-39928-2

Transcriptome analysis of a rice cultivar reveals the differentially expressed genes in response to wild and mutant strains of Xanthomonas oryzae pv. oryzae
Cited by: 18
Author(s): Chunlian Wang, Rezwan Tariq, Zhiyuan Ji, Zheng Wei, Kaili Zheng, Rukmini Mishra, Kun Zhao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-40091-x

Amelogenic transcriptome profiling in ameloblast-like cells derived from adult gingival epithelial cells
Cited by: 7
Author(s): Sun-Yi Hyun, Seyoung Mun, Kyung-Jung Kang, Jong-Chan Lim, Shinyoung Kim, Kyudong Han, Young-Joo Jang
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41675-3

Detection of novel fusion-transcripts by RNA-Seq in T-cell lymphoblastic lymphoma
Cited by: 27
Author(s): Pilar López-Nieva, Pablo Fernández-Navarro, Osvaldo Graña‐Castro, Eduardo Andrés-León, Javíer Santos, María Villa‐Morales, María Ángeles Cobos-Fernández, Laura González-Sánchez, Marcos Malumbres, María Salazar, José Fernández‐Piqueras
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41748-3

Global Gene Networks in 3D4/31 Porcine Alveolar Macrophages Treated with Antigenic Epitopes of Actinobacillus pleuropneumoniae ApxIA, IIA, and IVA
Cited by: 5
Author(s): Suji Kim, Myung Whan Oh, Woo Bin Park, Han Sang Yoo
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41703-2

RNA-seq reveals the involvement of key genes for aerobic adaptation in rice
Cited by: 23
Author(s): Amol S. Phule, Kalyani M. Barbadikar, Sheshu Madhav Maganti, P. Seguttuvel, D. Subrahmanyam, M.B.B. Prasad Babu, Polumetla Ananda Kumar
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41796-9

Transcriptional response of grapevine to infection with the fungal pathogen Lasiodiplodia theobromae
Cited by: 11
Author(s): Wei Zhang, Jiye Yan, Xinghong Li, Qikai Xing, K. W. Thilini Chethana, Wensheng Zhao
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-41778-x

Environmental interactions are regulated by temperature in Burkholderia seminalis TC3.4.2R3
Cited by: 3
Author(s): Priscila Jane Romano de Oliveira Gonçalves, Carmen C. Denman, Almir José Ferreira, Sarina Tsui, Marcelo Brocchi, Brendan W. Wren, Welington Luiz Araújo
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-42393-6

Comparative RNA sequencing reveals that HPV16 E6 abrogates the effect of E6*I on ROS metabolism
Cited by: 15
Author(s): Philippe Paget-Bailly, Koceila Meznad, Diane Bruyère, Jérôme Perrard, Michaël Herfs, Alain C. Jung, Christiane Mougin, Jean‐Luc Prétet, Aurélie Baguet
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-42179-w

Maternal DCAF13 Regulates Chromatin Tightness to Contribute to Embryonic Development
Cited by: 11
Author(s): Yang Liu, Long‐Wen Zhao, Jingling Shen, Heng‐Yu Fan, Yan Jin
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43259-7

The implication of plastid transcriptome analysis in petaloid monocotyledons: A case study of Lilium lancifolium (Liliaceae, Liliales)
Cited by: 3
Author(s): Hoang Dang Khoa, Joohwan Kim
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43578-9

Differences in the molecular signatures of mucosal-associated invariant T cells and conventional T cells
Cited by: 25
Author(s): Daeui Park, Hong Gi Kim, Miok Kim, Tamina Park, Hyung‐Ho Ha, Dong Hoon Lee, Kang-Seo Park, Seong Jun Park, Hae Ja Lim, Chang Hoon Lee
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-43979-w

Transcriptional profiling of coaggregation interactions between Streptococcus gordonii and Veillonella parvula by Dual RNA-Seq
Cited by: 19
Author(s): Naresh V.R. Mutha, Waleed K. Mohammed, Natalio Krasnogor, Geok Yuan Annie Tan, Wei Yee Wee, Yongming Li, Siew Woh Choo, Nicholas S. Jakubovics
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-45089-z

Divergent age-dependent peripheral immune transcriptomic profile following traumatic brain injury
Cited by: 10
Author(s): Amanda Hazy, Lauren Bochicchio, Andrea Oliver, Eric Xie, Shuo Geng, Thomas Brickler, Hehuang Xie, Liwu Li, Irving C. Allen, Michelle H. Theus
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-45600-6

Healthy adiposity and extended lifespan in obese mice fed a diet supplemented with a polyphenol-rich plant extract
Cited by: 24
Author(s): Virginie Aires, Jérôme Labbé, Valérie Deckert, Jean‐Paul Pais de Barros, Romain Boidot, Marc Haumont, Guillaume Maquart, Naïg Le Guern, David Masson, Emmanuelle Prost-Camus, Michel Prost, Laurent Lagrost
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47003-z

The anti-aflatoxigenic mechanism of cinnamaldehyde in Aspergillus flavus
Cited by: 36
Author(s): Ping Wang, Longxue Ma, Jing Jin, Mao Zheng, Lin Pan, Yang Zhao, Xiulan Sun, Yang Liu, Fuguo Xing
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-47985-w

A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution
Cited by: 131
Author(s): Lorenzo Barchi, Marco Pietrella, Luca Venturini, Andrea Minio, L. Toppino, Alberto Acquadro, Giuseppe Andolfo, Giuseppe Aprea, C. Avanzato, Laura Bassolino, Cinzia Comino, Alessandra Dal Molin, Alberto Ferrarini, L. Maor, Ezio Portis, Sebastian Reyes-Chin-Wo, Riccardo Rinaldi, T. Sala, Davide Scaglione, Prashant Sonawane, Paola Tononi, Efrat Almekias-Siegl, Elisa Zago, Maria Raffaella Ercolano, Asaph Aharoni, Massimo Delledonne, Giovanni Giuliano, Sergio Lanteri, Giuseppe Leonardo Rotino
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48309-8

Transcriptional alterations reveal Bacillus amyloliquefaciens-rice cooperation under salt stress
Cited by: 68
Author(s): Puneet Singh Chauhan, Charu Lata, Shalini Tiwari, Abhishek Chauhan, Shaunak Mishra, Lalit Agrawal, Debasis Chakrabarty, Puneet Singh Chauhan
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48867-x

Construction of complete Tupaia belangeri transcriptome database by whole-genome and comprehensive RNA sequencing
Cited by: 16
Author(s): Takahiro Sanada, Kyoko Tsukiyama-Kohara, Tadasu Shin-I, Naoki Yamamoto, Mohammad Enamul Hoque Kayesh, Daisuke Yamane, Junichiro Takano, Yumiko Shiogama, Yasuhiro Yasutomi, Kazuho Ikeo, Takashi Gojobori, Masashi Mizokami, Michinori Kohara
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-48533-2

Mapping insoluble indole metabolites in the gastrointestinal environment of a murine colorectal cancer model using desorption/ionisation on porous silicon imaging
Cited by: 13
Author(s): David Rudd, Kirsten Benkendorff, Charndeep Chahal, Taryn Guinan, Ove Gustafsson, Babak Esmaeelian, Hanna Krysinska, Lisa D. Pogson, Nicolas H. Voelcker, Catherine A. Abbott
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-48983-8

Transcriptional profiling of corneal stromal cells derived from patients with keratoconus
Cited by: 19
Author(s): Rabab Sharif, Mariam Lotfy Khaled, Tina B. McKay, Yutao Liu, Dimitrios Karamichos
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-49089-x

Muscle transcriptome analysis reveals genes and metabolic pathways related to mineral concentration in Bos indicus
Cited by: 14
Author(s): Juliana Afonso, Luiz Lehmann Coutinho, P. C. Tizioto, Wellison J. S. Diniz, A. O. de Lima, M. I. P. Rocha, C. E. Buss, Bruno de Bezerril Andrade, Otávio Piaya, Juliana Virginio da Silva, Laura A B Lins, Caio Fernando Gromboni, Ana Rita Nogueira, M. R. S. Fortes, Gérson Barreto Mourão, Luciana Correia de Almeida Regitano
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-48977-6

Innate immune responses to paraquat exposure in a Drosophila model of Parkinson’s disease
Cited by: 35
Author(s): Urmila Maitra, Michael N. Scaglione, Stanislava Chtarbanova, Janis M. O’Donnell
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-49177-y

Characterisation and localisation of the endocannabinoid system components in the adult human testis
Cited by: 46
Author(s): John Nielsen, Antoine Rolland, Ewa Rajpert–De Meyts, Christian Janfelt, Anne Jørgensen, Sofia B. Winge, David M. Kristensen, Anders Juul, Frédéric Chalmel, Bernard Jégou, Niels E. Skakkebæk
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-52599-3

Genome-wide transcriptional profiling for elucidating the effects of brassinosteroids on Glycine max during early vegetative development
Cited by: 11
Author(s): Li Song, Wei Chen, Qiuming Yao, Binhui Guo, Babu Valliyodan, Wenfei Wang, Henry T. Nguyen
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-53239-6

The DOT1L inhibitor Pinometostat decreases the host-response against infections: Considerations about its use in human therapy
Cited by: 18
Author(s): Laura Marcos-Villar, Amelia Nieto
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-019-55902-4

Lipid and DHA-production in Aurantiochytrium sp. – Responses to nitrogen starvation and oxygen limitation revealed by analyses of production kinetics and global transcriptomes
Cited by: 45
Author(s): Tonje Marita Bjerkan Heggeset, Helga Ertesvåg, Bin Liu, Trond E. Ellingsen, Ôlav Vadstein, Inga Marie Aasen
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-56171-x

Terminal neuron localization to the upper cortical plate is controlled by the transcription factor NEUROD2
Cited by: 14
Author(s): Gizem Guzelsoy, Cansu Akkaya, Dila Atak, Cory D. Dunn, Alkan Kabakçıoğlu, Nurhan Özlü, Gulayse Ince-Dunn
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-56305-1

Differential immune response modulation in early Leishmania amazonensis infection of BALB/c and C57BL/6 macrophages based on transcriptome profiles
Cited by: 21
Author(s): Juliana Ide Aoki, Sandra Márcia Muxel, Ricardo Andrade Zampieri, Karl Erik Müller, Audun Helge Nerland, Lucile Maria Floeter‐Winter
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-019-56407-w

Crebl2 regulates cell metabolism in muscle and liver cells
Cited by: 10
Author(s): Marcel Tiebe, Martina S. Lutz, Deniz Senyilmaz Tiebe, Aurelio A. Teleman
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-57592-9

The Asthma-associated PER1-like domain-containing protein 1 (PERLD1) Haplotype Influences Soluble Glycosylphosphatidylinositol Anchor Protein (sGPI-AP) Levels in Serum and Immune Cell Proliferation
Cited by: 3
Author(s): Yang Yie Sio, Ramani Anantharaman, Sean Qiu En Lee, Sri Anusha Matta, Yu Ting Ng, Fook Tim Chew
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-58136-x

Expression of L-type amino acid transporter 1 as a molecular target for prognostic and therapeutic indicators in bladder carcinoma
Cited by: 31
Author(s): Maihulan Maimaiti, Shinichi Sakamoto, Yasutaka Yamada, Masahiro Sugiura, Junryo Rii, Nobuyoshi Takeuchi, Yusuke Imamura, Tomomi Furihata, Koji Ando, Kosuke Higuchi, Minhui Xu, Tomokazu Sazuka, Kazuyoshi Nakamura, Atsushi Kaneda, Yoshikatsu Kanai, Natasha Kyprianou, Yuzuru Ikehara, Naohiko Anzai, Tomohiko Ichikawa
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-58885-9

Early dynamics of photosynthetic Lhcf2 and Lhcf15 transcription and mRNA stabilities in response to herbivory-related decadienal in Phaeodactylum tricornutum
Cited by: 7
Author(s): Shahima Islam, Tanya Sabharwal, Samantha Wu, T. J. Bullock, Mona C. Mehdy
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-59893-5

Inhibition of TGF-β signalling in combination with nal-IRI plus 5-Fluorouracil/Leucovorin suppresses invasion and prolongs survival in pancreatic tumour mouse models
Cited by: 16
Author(s): Eunji Hong, Su‐Jin Park, Akira Ooshima, Chang Pyo Hong, Jinah Park, Jin Sun Heo, Siyoung Lee, Haichao An, Jongmin Kang, Seok Hee Park, Joon Oh Park, Seong‐Jin Kim
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-59697-7

Exogenously overexpressed intronic long noncoding RNAs activate host gene expression by affecting histone modification in Arabidopsis
Cited by: 18
Author(s): Zhang-Wei Liu, Nan Zhao, Yin-Na Su, Shanshan Chen, Xin‐Jian He
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-59597-w

Genome-wide analysis of WRKY transcription factors in Aquilaria sinensis (Lour.) Gilg
Cited by: 18
Author(s): Yunyuan Xu, Peng Sun, Xiaolin Tang, Zhi‐Hui Gao, Zheng Zhang, Jianhe Wei
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-60807-8

G-protein signaling is required for increasing germline stem cell division frequency in response to mating in Drosophila males
Cited by: 10
Author(s): Manashree Malpe, Leon F. McSwain, Karl Kudyba, Chun L. Ng, Jennie Nicholson, Maximilian Brady, Yue Qian, Vinay Choksi, Alicia G. Hudson, Benjamin B. Parrott, Cordula Schulz
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-61591-1

Finding cell-specific expression patterns in the early Ciona embryo with single-cell RNA-seq
Cited by: 4
Author(s): Garth R Ilsley, Ritsuko Suyama, Takeshi Noda, Nori Satoh, Nicholas M. Luscombe
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-61826-1

RNA-Seq transcriptome profiling in three liver regeneration models in rats: comparative analysis of partial hepatectomy, ALLPS, and PVL
Cited by: 22
Author(s): Dilek Çolak, Olfat Al‐Harazi, Osama Mustafa, Fanwei Meng, Abdullah M. Assiri, Dipok Kumar Dhar, Dieter C. Bröering
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-62726-0

Transcriptome Profile of Nicotinic Receptor-Linked Sensitization of Beta Amyloid Neurotoxicity
Cited by: 4
Author(s): Komal Arora, Mahdi Belcaid, Megan J. Lantz, Ruth Taketa, Robert A. Nichols
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-63671-8

Mesenchymal-endothelial transition-derived cells as a potential new regulatory target for cardiac hypertrophy
Cited by: 9
Author(s): Wenyan Dong, Ruiqi Li, Huiwen Yang, Yan Lu, Liqing Zhou, Lei Sun, Wang Dian-liang, Jinzhu Duan
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65164-0

Denser Markers and Advanced Statistical Method Identified More Genetic Loci Associated with Husk Traits in Maize
Cited by: 11
Author(s): Zhenhai Cui, Han Dong, Ao Zhang, Yijun Ruan, Siqi Jiang, Yan He, Zhiwu Zhang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-64873-w

Regulation of Adipocyte Differentiation by METTL4, a 6 mA Methylase
Cited by: 20
Author(s): Zhenxi Zhang, Yingzi Hou, Yao Wang, Tao Gao, Ziyue Ma, Ying Yang, Pei Zhang, Yi Fan, Jun Zhan, Hongquan Zhang, Quan Du
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65527-7

Whole blood transcriptome profile at hospital admission discriminates between patients with ST-segment elevation and non-ST-segment elevation acute myocardial infarction
Cited by: 8
Author(s): Mattia Chiesa, Luca Piacentini, Elisa Bono, Valentina Milazzo, Jeness Campodonico, Giancarlo Marenzi, Gualtiero I. Colombo
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-68930-2

Hydrogen-rich water reduces inflammatory responses and prevents apoptosis of peripheral blood cells in healthy adults: a randomized, double-blind, controlled trial
Cited by: 34
Author(s): Min Sub Sim, Chong-Su Kim, Woo Jeong Shon, Youngkwan Lee, Eun Young Choi, Dong Mi Shin
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-69015-w

Transcriptome analysis of desmoplastic small round cell tumors identifies actionable therapeutic targets: a report from the Children’s Oncology Group
Cited by: 25
Author(s): Pooja Hingorani, Valentin Dinu, Xiyuan Zhang, Haiyan Lei, Jack F. Shern, Jin Park, Jason C. Steel, Femina Rauf, David M. Parham, Julie M. Gastier‐Foster, David A. Hall, Douglas S. Hawkins, Stephen X. Skapek, Joshua LaBaer, Troy A. McEachron
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-70792-7

Targeting cPLA2 derived lipid hydroperoxides as a potential intervention for sarcopenia
Cited by: 19
Author(s): Gavin Pharaoh, Jacob L. Brown, Kavithalakshmi Sataranatarajan, Parker Kneis, Jan Bian, Rojina Ranjit, Niran Hadad, Constantin Georgescu, Peter S. Rabinovitch, Qitao Ran, Jonathan D. Wren, Willard M. Freeman, Michael Kinter, Arlan Richardson, Holly Van Remmen
Software Mentions: 1
Published: over 4 years ago

10.1186/s13063-015-0879-7

Topical clobetasol for the treatment of toxic epidermal necrolysis: study protocol for a randomized controlled trial
Cited by: 3
Author(s): Reason Wilken, Chin‐Shang Li, Victoria R. Sharon, Kyoungmi Kim, Falin B. Patel, Forum Patel, Emanual Maverakis
Software Mentions: 1
Published: over 9 years ago

10.1128/mBio.02170-16

Modulation of microRNA-mRNA Target Pairs by Human Papillomavirus 16 Oncoproteins
Cited by: 55
Author(s): Mallory E. Harden, Nripesh Prasad, Anthony John Griffiths, Karl Münger
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.01284-17

Pyruvate Accumulation Is the First Line of Cell Defense against Heat Stress in a Fungus
Cited by: 43
Author(s): Xing Zhang, Raymond J. St. Leger, Weiguo Fang
Software Mentions: 1
Published: about 7 years ago