10.1371/journal.pone.0236823

Unraveling the mechanisms of resistance to Sclerotium rolfsii in peanut (Arachis hypogaea L.) using comparative RNA-Seq analysis of resistant and susceptible genotypes
Cited by: 25
Author(s): Tejas C. Bosamia, Sneha M. Dodia, Gyan P. Mishra, Suhail Ahmad, Binal Joshi, Polavakkalipalayam P. Thirumalaisamy, Narendra Kumar, A. L. Rathnakumar, Chandramohan Sangh, Abhay Kumar, Radhakrishnan Thankappan
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0157727

Differential Transcriptome Networks between IDO1-Knockout and Wild-Type Mice in Brain Microglia and Macrophages
Cited by: 12
Author(s): Dianelys González-Peña, Scott E. Nixon, Bruce R. Southey, Marcus A. Lawson, Robert H. McCusker, Álvaro González Hernández, Robert Dantzer, Keith W. Kelley, Sandra L. Rodriguez-Zas
Software Mentions: 1
Published: about 9 years ago

10.3390/ani10010102

Transcriptomic Analysis of Testicular Gene Expression in Normal and Cryptorchid Horses
Cited by: 4
Author(s): Haoyuan Han, Hong Dai, Qiuming Chen, Yuan Gao, Jun Li, Wantao Li, Ruihua Dang, Chuzhao Lei
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-2901-1

Whole blood transcriptional profiling comparison between different milk yield of Chinese Holstein cows using RNA-seq data
Cited by: 21
Author(s): Xue Bai, Zhuqing Zheng, Bin Liu, Xiaoyang Ji, Yongsheng Bai, Wenguang Zhang
Software Mentions: 1
Published: almost 9 years ago

10.1038/s12276-019-0254-y

AMPK alleviates high uric acid-induced Na+-K+-ATPase signaling impairment and cell injury in renal tubules
Cited by: 22
Author(s): Jing Xiao, Sibo Zhu, Haochen Guan, Yuqi Zheng, Fengqin Li, Xiaoli Zhang, Hui Guo, Xiaojun Wang, Zhibin Ye
Software Mentions: 1
Published: about 6 years ago

10.12688/f1000research.6735.1

Questioned validity of Gene Expression Dysregulated Domains in Down's Syndrome
Cited by: 16
Author(s): Henry W. Long, William C. Mobley, Nishant Singhal
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0158349

Supervillin Is a Component of the Hair Cell’s Cuticular Plate and the Head Plates of Organ of Corti Supporting Cells
Cited by: 6
Author(s): Lana M. Pollock, Nilay Gupta, Xi Chen, Elizabeth J. Luna, Brian M. McDermott
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0043713

Transcriptome Analysis of the Silkworm (Bombyx mori) by High-Throughput RNA Sequencing
Cited by: 43
Author(s): Yinü Li, Guozeng Wang, Jian Tian, Huifen Liu, Huipeng Yang, Yi Yao, Jinhui Wang, Xiaofeng Shi, Feng Jiang, Bin Yao, Zhifang Zhang
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0118295

RNA-Seq Analysis Identifies New Genes Regulated by the Histone-Like Nucleoid Structuring Protein (H-NS) Affecting Vibrio cholerae Virulence, Stress Response and Chemotaxis
Cited by: 53
Author(s): Hongxia Wang, Julio C. Ayala, Jorge A. Benítez, Alcino J. Silva
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0170441

Testicular Dysgenesis Syndrome and Long-Lasting Epigenetic Silencing of Mouse Sperm Genes Involved in the Reproductive System after Prenatal Exposure to DEHP
Cited by: 50
Author(s): Ludwig Stenz, Jessica Escoffier, Rita Rahban, Serge Nef, Ariane Paoloni-Giacobino
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0135337

Rapid Characterization of Microalgae and Microalgae Mixtures Using Matrix-Assisted Laser Desorption Ionization Time-Of-Flight Mass Spectrometry (MALDI-TOF MS)
Cited by: 26
Author(s): Duane Barbano, Regina Diaz, Lin Zhang, Todd R. Sandrin, Henri Gerken, Thomas A. Dempster
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0147053

Dynamic Effects of Topoisomerase I Inhibition on R-Loops and Short Transcripts at Active Promoters
Cited by: 39
Author(s): Jessica Marinello, Stefania Bertoncini, Iris Aloisi, Agnese Cristini, Guidantonio Malagoli Tagliazucchi, Mattia Forcato, Olivier Sordet, Giovanni Capranico
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0144118

Comparative Transcriptome Analysis of Recessive Male Sterility (RGMS) in Sterile and Fertile Brassica napus Lines
Cited by: 36
Author(s): Cunmin Qu, Fuyou Fu, Miao Liu, Hongwei Zhao, Chuan-Chuan Liu, Jiana Li, Zhongjie Tang, Xinhua Xu, Xiao‐Yang Qiu, Rui Wang, Kun Lu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0173438

RNA-sequence analysis of gene expression from honeybees (Apis mellifera) infected with Nosema ceranae
Cited by: 43
Author(s): Bouabid Badaoui, A. Fougeroux, Fabien Petit, Anna Anselmo, C. Gorni, Marco Cucurachi, Antonella Cersini, Anna Granato, G. Cardeti, Giovanni Formato, Franco Mutinelli, Elisabetta Giuffra, J. L. Williams, Sara Botti
Software Mentions: 1
Published: over 8 years ago

10.1038/s41598-020-70792-7

Targeting cPLA2 derived lipid hydroperoxides as a potential intervention for sarcopenia
Cited by: 19
Author(s): Gavin Pharaoh, Jacob L. Brown, Kavithalakshmi Sataranatarajan, Parker Kneis, Jan Bian, Rojina Ranjit, Niran Hadad, Constantin Georgescu, Peter S. Rabinovitch, Qitao Ran, Jonathan D. Wren, Willard M. Freeman, Michael Kinter, Arlan Richardson, Holly Van Remmen
Software Mentions: 1
Published: almost 5 years ago

10.1096/fba.2021-00029

Ciliary GPCR‐based transcriptome as a key regulator of cilia length control
Cited by: 11
Author(s): Yuki Kobayashi, Sakura Tomoshige, Kosuke Imakado, Yuko Sekino, Noriko Koganezawa, Tomoaki Shirao, Giovanne B. Diniz, Tatsuo Miyamoto, Yumiko Saito
Software Mentions: 1
Published: about 4 years ago

10.1096/fj.201600603R

Heme acquisition in the parasitic filarial nematode <i>Brugia malayi</i>
Cited by: 18
Author(s): Ashley N. Luck, Xian‐You Yuan, Denis Voronin, Barton E. Slatko, Iqbal Hamza, Jeremy M. Foster
Software Mentions: 1
Published: about 9 years ago

10.1096/fj.201802213RR

Genome‐wide CRISPR knockout screens identify NCAPG as an essential oncogene for hepatocellular carcinoma tumor growth
Cited by: 52
Author(s): Yu Wang, Bin Gao, Peng Tan, Yohana Ayupriyanti Handoko, Karthik Sekar, Amudha Deivasigamani, Veerabrahma Pratap Seshachalam, Han-Yue OuYang, Ming Shi, Chan Xie, Brian K. P. Goh, London Lucien Ooi, K. M. Hui
Software Mentions: 1
Published: over 6 years ago

10.1186/s13063-015-0879-7

Topical clobetasol for the treatment of toxic epidermal necrolysis: study protocol for a randomized controlled trial
Cited by: 3
Author(s): Reason Wilken, Chin‐Shang Li, Victoria R. Sharon, Kyoungmi Kim, Falin B. Patel, Forum Patel, Emanual Maverakis
Software Mentions: 1
Published: almost 10 years ago

10.1096/fj.201700818RRR

Prolonged activation of cAMP signaling leads to endothelial barrier disruption <i>via</i> transcriptional repression of <i>RRAS</i>
Cited by: 18
Author(s): Carole Y. Perrot, Junko Sawada, Masanobu Komatsu
Software Mentions: 1
Published: about 7 years ago

10.1007/s13365-017-0596-y

Peromyscus leucopus mouse brain transcriptome response to Powassan virus infection
Cited by: 9
Author(s): Luwanika Mlera, Kimberly Meade-White, Eric Dahlstrom, Rachel Baur, Kishore Kanakabandi, Kimmo Virtaneva, Stephen F. Porcella, Marshall E. Bloom
Software Mentions: 1
Published: over 7 years ago

10.1128/mBio.02170-16

Modulation of microRNA-mRNA Target Pairs by Human Papillomavirus 16 Oncoproteins
Cited by: 55
Author(s): Mallory E. Harden, Nripesh Prasad, Anthony John Griffiths, Karl Münger
Software Mentions: 1
Published: over 8 years ago

10.3389/fnagi.2017.00244

Studies on Colony Stimulating Factor Receptor-1 and Ligands Colony Stimulating Factor-1 and Interleukin-34 in Alzheimer's Disease Brains and Human Microglia
Cited by: 56
Author(s): Douglas G. Walker, Tiffany M. Tang, Lih‐Fen Lue
Software Mentions: 1
Published: almost 8 years ago

10.3389/fbioe.2020.00844

Effect of a Novel Alpha/Beta Hydrolase Domain Protein on Tolerance of K. marxianus to Lignocellulosic Biomass Derived Inhibitors
Cited by: 6
Author(s): Dan Wu, Dongmei Wang, Jiong Hong
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-14-520

Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling
Cited by: 31
Author(s): Shan Li, Dong Xia, Zhengchang Su
Software Mentions: 1
Published: almost 12 years ago

10.3389/fbioe.2020.619583

Bringing MicroRNAs to Light: Methods for MicroRNA Quantification and Visualization in Live Cells
Cited by: 32
Author(s): Tarana Siddika, Ilka U. Heinemann
Software Mentions: 1
Published: over 4 years ago

10.3389/fbioe.2020.619055

Environmental Regulation of PndbA600, an Auto-Inducible Promoter for Two-Stage Industrial Biotechnology in Cyanobacteria
Cited by: 5
Author(s): Mary Ann Madsen, Graham Hamilton, Paweł Herzyk, Anna Amtmann
Software Mentions: 1
Published: over 4 years ago

10.1128/mBio.01284-17

Pyruvate Accumulation Is the First Line of Cell Defense against Heat Stress in a Fungus
Cited by: 43
Author(s): Xing Zhang, Raymond J. St. Leger, Weiguo Fang
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0066740

YjcC, a c-di-GMP Phosphodiesterase Protein, Regulates the Oxidative Stress Response and Virulence of Klebsiella pneumoniae CG43
Cited by: 41
Author(s): Ching Jou Huang, Zhe Chong Wang, Hsi Yuan Huang, Hsien Da Huang, Hwei-Ling Peng
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0131559

Genome-, Transcriptome- and Proteome-Wide Analyses of the Gliadin Gene Families in Triticum urartu
Cited by: 23
Author(s): Yanlin Zhang, Guangbin Luo, Dongcheng Liu, Dongzhi Wang, Wenlong Yang, Jiazhu Sun, Aimin Zhang, Kai Zhan
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0148558

GAD2 Alternative Transcripts in the Human Prefrontal Cortex, and in Schizophrenia and Affective Disorders
Cited by: 23
Author(s): Kasey Davis, Ran Tao, Chao Li, Yuan Gao, Marjorie C. Gondré‐Lewis, Barbara K. Lipska, Joo Heon Shin, Bin Xie, Tianzhang Ye, Daniel R. Weinberger, Joel E. Kleinman, Thomas M. Hyde
Software Mentions: 1
Published: over 9 years ago

10.3389/fcell.2021.640972

The Frequent Sampling of Wound Scratch Assay Reveals the “Opportunity” Window for Quantitative Evaluation of Cell Motility-Impeding Drugs
Cited by: 20
Author(s): Sholpan Kauanova, Arshat Urazbayev, Ivan A. Vorobjev
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0184451

"Stealth dissemination" of macrophage-tumor cell fusions cultured from blood of patients with pancreatic ductal adenocarcinoma
Cited by: 50
Author(s): Gary A. Clawson, Gail L. Matters, Ping Xin, Christopher O. McGovern, Eric Wafula, Claude W. dePamphilis, Morgan Meckley, Joyce Y. Wong, Luke A. Stewart, Christopher D’Jamoos, Н. Д. Альтман, Yuka Imamura Kawasawa, Zhaohui Du, Loren Honaas, Thomas Abraham
Software Mentions: 1
Published: almost 8 years ago

10.1128/mBio.01549-17

CXC Chemokines Exhibit Bactericidal Activity against Multidrug-Resistant Gram-Negative Pathogens
Cited by: 11
Author(s): Matthew A. Crawford, Debra J. Fisher, Lisa M. Leung, Sara Lomonaco, Christine Lascols, Antonio Cannatelli, Tommaso Giani, Gian María Rossolini, Yohei Doi, David R. Goodlett, Marc W. Allard, Shashi Sharma, Erum Khan, Robert K. Ernst, Molly A. Hughes
Software Mentions: 1
Published: over 7 years ago

10.3389/fcell.2021.633259

SYVN1-MTR4-MAT2A Signaling Axis Regulates Methionine Metabolism in Glioma Cells
Cited by: 6
Author(s): Lude Wang, Bin Hu, Kailing Pan, Jie Chang, Xingyu Zhao, Lin Chen, Hanyang Lin, Jing Wang, Gezhi Zhou, Wenxia Xu, Jianlie Yuan
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0182032

Identification of RNA biomarkers for chemical safety screening in mouse embryonic stem cells using RNA deep sequencing analysis
Cited by: 6
Author(s): Hidenori Tani, Jun-ichi Takeshita, Hiroshi Aoki, Kaoru Nakamura, Ryosuke Abe, Akinobu Toyoda, Yasunori Endo, Sadaaki Miyamoto, Masashi Gamo, Hiroaki Sato, Masaki Takasu
Software Mentions: 1
Published: about 8 years ago

10.1186/1471-2164-15-871

Transcriptome sequencing of rhizome tissue of Sinopodophyllum hexandrum at two temperatures
Cited by: 35
Author(s): Anita Kumari, Harprit Singh, Ashwani Jha, Mohit Kumar Swarnkar, Ravi Shankar, Sanjay Kumar
Software Mentions: 1
Published: over 11 years ago

10.3389/fcell.2019.00329

Eosinophil Activation by Toll-Like Receptor 4 Ligands Regulates Macrophage Polarization
Cited by: 20
Author(s): Ji-Young Yoon, Han-Na Um, Jae‐Dong Jang, Young-An Bae, Woo‐Jae Park, Hee Joo Kim, Mee-Sup Yoon, Il Yup Chung, YunJae Jung
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.639111

Serine Metabolism Regulates YAP Activity Through USP7 in Colon Cancer
Cited by: 17
Author(s): Xingyu Zhao, Jianfei Fu, Bin Hu, Lin Chen, Jing Wang, Jinyong Fang, Chenyang Ge, Hanyang Lin, Kailing Pan, Liang Fu, Lude Wang, Jinlin Du, Wenxia Xu
Software Mentions: 1
Published: about 4 years ago

10.1128/mBio.02772-18

A Dopamine-Responsive Signal Transduction Controls Transcription of Salmonella enterica Serovar Typhimurium Virulence Genes
Cited by: 4
Author(s): Dezhi Yang, Ying Kong, Wei Sun, Wei Kong, Yixin Shi
Software Mentions: 1
Published: about 6 years ago

10.1128/mBio.02926-19

RNA G-Quadruplex Structures Mediate Gene Regulation in Bacteria
Cited by: 46
Author(s): Xiaolong Shao, Weitong Zhang, Mubarak Ishaq Umar, Hei Yuen Wong, Zijing Seng, Yingpeng Xie, Yingchao Zhang, Liang Yang, Chun Kit Kwok, Xin Deng
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3014-6

Comparative transcriptome investigation of global gene expression changes caused by miR156 overexpression in Medicago sativa
Cited by: 51
Author(s): Ruimin Gao, Ryan E Austin, Lisa Amyot, Abdelali Hannoufa
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0190935

Relaxin reverses inflammatory and immune signals in aged hearts
Cited by: 25
Author(s): Brian Martin, Beth A Gabris-Weber, Rajiv P. Reddy, Guillermo Romero, Ansuman Chattopadhyay, Guy Salama
Software Mentions: 1
Published: over 7 years ago

10.3389/fcell.2020.00529

USP15 Enhances Re-epithelialization Through Deubiquitinating EIF4A1 During Cutaneous Wound Repair
Cited by: 12
Author(s): Yixuan Zhao, Xin Huang, Zewei Zhang, Yifan Zhang, Guoyou Zhang, Tao Zan, Qingfeng Li
Software Mentions: 1
Published: about 5 years ago

10.3389/fcell.2021.652032

circDENND1B Participates in the Antiatherosclerotic Effect of IL-1β Monoclonal Antibody in Mouse by Promoting Cholesterol Efflux via miR-17-5p/Abca1 Axis
Cited by: 17
Author(s): Fei Xu, Li Shen, Caixia Han, Rui Wang, Tongtong Zang, Juying Qian
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0170609

Transcriptome Sequencing Reveals Key Pathways and Genes Associated with Cisplatin Resistance in Lung Adenocarcinoma A549 Cells
Cited by: 25
Author(s): Yani Fang, Cheng Zhang, Tong Wu, Qi Wang, Jinhui Liu, Peng Dai
Software Mentions: 1
Published: over 8 years ago

10.3389/fcell.2018.00005

Central and Peripheral Nervous System Progenitors Derived from Human Pluripotent Stem Cells Reveal a Unique Temporal and Cell-Type Specific Expression of PMCAs
Cited by: 2
Author(s): Muwan Chen, Sofie H Laursen, Mette Habekost, Camilla Højland Knudsen, Susanne Hvolbøl Buchholdt, Jinrong Huang, Fengping Xu, Xin Liu, Lars Bolund, Yonglun Luo, Poul Nissen, Fabia Febbraro, Mark Denham
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-015-1269-y

Transcriptome sequencing and analysis of the entomopathogenic fungus Hirsutella sinensis isolated from Ophiocordyceps sinensis
Cited by: 28
Author(s): Zhi‐Qiang Liu, Shan Lin, Peter J. Baker, Lingfang Wu, Xiaorui Wang, Hui Wu, Feng Xu, Hongyan Wang, Mgavi Elombe Brathwaite, Yu‐Guo Zheng
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.02088-20

Molecular Dialogues between Early Divergent Fungi and Bacteria in an Antagonism versus a Mutualism
Cited by: 15
Author(s): Olga A. Lastovetsky, Lev D. Krasnovsky, Xiaotian Qin, María L. Gaspar, Andrii P. Gryganskyi, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B. K. Reddy, Chris Daum, Nicole Shapiro, Natalia Ivanova, Nikos C. Kyrpides, Tanja Woyke, Teresa E. Pawlowska
Software Mentions: 1
Published: almost 5 years ago

10.3389/fcell.2020.00105

Loss of CDYL Results in Suppression of CTNNB1 and Decreased Endometrial Receptivity
Cited by: 16
Author(s): Xiaowei Zhou, Bufang Xu, Dan Zhang, Xiaoping Jiang, Hsun‐Ming Chang, Xiaoyu Xia, Aijun Zhang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0140487

Alternative Splicing in Next Generation Sequencing Data of Saccharomyces cerevisiae
Cited by: 36
Author(s): Konrad Schreiber, Gergely Csaba, Martin Haslbeck, Ralf Zimmer
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0158279

Transcriptome Profiling Reveals the Antitumor Mechanism of Polysaccharide from Marine Algae Gracilariopsis lemaneiformis
Cited by: 26
Author(s): Yani Kang, Hua Li, Jun Wu, Xiaoting Xu, Xue Sun, Xiaodong Zhao, Nianjun Xu
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0112964

Global Characterization of Differential Gene Expression Profiles in Mouse Vγ1+ and Vγ4+ γδ T Cells
Cited by: 14
Author(s): Peng Dong, Siya Zhang, Mengli Cai, Ning Kang, Yu Hu, Lianxian Cui, Jianmin Zhang, He Wang
Software Mentions: 1
Published: over 10 years ago

10.1080/20002297.2019.1643205

<i>Staphylococcus aureus</i> induces COX-2-dependent proliferation and malignant transformation in oral keratinocytes
Cited by: 16
Author(s): Yuxia Wang, Shiyu Liu, Bolei Li, Yaling Jiang, Xinxuan Zhou, Jing Chen, Mingyun Li, Biao Ren, Xian Peng, Xuedong Zhou, Lei Cheng
Software Mentions: 1
Published: over 6 years ago

10.3389/fcell.2018.00089

ENaC in Cholinergic Brush Cells
Cited by: 6
Author(s): Chrissy Kandel, P Schmidt, Alexander Perniss, Maryam Keshavarz, Paul Scholz, Sabrina Osterloh, Mike Althaus, Wolfgang Kummer, Klaus Deckmann
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0078190

Genome-Wide Transcriptional Effects of the Anti-Cancer Agent Camptothecin
Cited by: 29
Author(s): Artur Veloso, Benjamin Biewen, Michelle T. Paulsen, Nathaniel K. Berg, Leonardo Carmo de Andrade Lima, J.K. Prasad, Karan Bedi, Brian Magnuson, Thomas E. Wilson, Mats Ljungman
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0100088

Fed State Prior to Hemorrhagic Shock and Polytrauma in a Porcine Model Results in Altered Liver Transcriptomic Response
Cited by: 7
Author(s): Charles Determan, Rebecca Cogwell Anderson, Aaron Becker, Nancy E. Witowski, Elizabeth R. Lusczek, Kristine E. Mulier, Greg J. Beilman
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0184581

Transcriptional responses in the hepatopancreas of Eriocheir sinensis exposed to deltamethrin
Cited by: 12
Author(s): Zhengfu Yang, Yiliu Zhang, Yingying Jiang, Fengjiao Zhu, Lingfeng Zeng, Yulan Wang, Xiaoqing Lei, Yi Yao, Yujie Hou, Xu Liu, Chengliang Xiong, Xianle Yang, Kun Hu
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0028585

EZH2 Codon 641 Mutations are Common in BCL2-Rearranged Germinal Center B Cell Lymphomas
Cited by: 106
Author(s): Russell J.H. Ryan, Mai Nitta, Darrell R. Borger, Lawrence Zukerberg, Judith A. Ferry, Nancy L. Harris, A. John Iafrate, B Bernstein, Aliyah R. Sohani, Long P. Le
Software Mentions: 1
Published: over 13 years ago

10.3389/fcimb.2018.00299

Antibiofilm and Antivirulence Activities of 6-Gingerol and 6-Shogaol Against Candida albicans Due to Hyphal Inhibition
Cited by: 58
Author(s): Jin-Hyung Lee, Yong‐Guy Kim, Pilsoon Choi, Jungyeob Ham, Jae Gyu Park
Software Mentions: 1
Published: almost 7 years ago

10.3389/fcimb.2018.00014

Alternative Splicing of Differentiated Myeloid Cell Transcripts after Infection by Anaplasma phagocytophilum Impacts a Selective Group of Cellular Programs
Cited by: 9
Author(s): J. Stephen Dumler, Sara H. Sinclair, Amol C. Shetty
Software Mentions: 1
Published: over 7 years ago

10.3389/fcimb.2017.00494

Transcriptional Immunoprofiling at the Tick-Virus-Host Interface during Early Stages of Tick-Borne Encephalitis Virus Transmission
Cited by: 17
Author(s): Saravanan Thangamani, Meghan E. Hermance, Rodrigo I. Santos, Mirko Slovák, Dar Heinze, Steven G. Widen, Mária Kazimírová
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0147625

ABA Is Required for Plant Acclimation to a Combination of Salt and Heat Stress
Cited by: 211
Author(s): Nobuhiro Suzuki, Elias Bassil, J. F. Hamilton, Madhuri A. Inupakutika, Sara I. Zandalinas, Deesha Tripathy, Yuting Luo, Erin Dion, Ginga Fukui, Ayana Kumazaki, Ruka Nakano, Rosa M. Rivero, Guido F. Verbeck, Rajeev K. Azad, Eduardo Blumwald, Ron Mittler
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0134057

Vitamin D Modulates Expression of the Airway Smooth Muscle Transcriptome in Fatal Asthma
Cited by: 32
Author(s): Blanca E. Himes, Cynthia Koziol‐White, Martin Johnson, Christina Nikolos, William F. Jester, Barbara J. Klanderman, Augusto A. Litonjua, Kelan G. Tantisira, Kevin Truskowski, Kevin Macdonald, Reynold A. Panettieri, Scott T. Weiss
Software Mentions: 1
Published: about 10 years ago

10.3389/fcimb.2017.00377

Splenic microRNA Expression Profiles and Integration Analyses Involved in Host Responses to Salmonella enteritidis Infection in Chickens
Cited by: 18
Author(s): Peng Li, Wenlei Fan, Qinghe Li, Jie Wang, Ranran Liu, Nadia Everaert, Jie Liu, Yonghong Zhang, Maiqing Zheng, Huanxian Cui, Guiping Zhao, Jie Wen
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0168744

Signatures of Crested Ibis MHC Revealed by Recombination Screening and Short-Reads Assembly Strategy
Cited by: 2
Author(s): Liao Chang, Shiyang He, Danqing Mao, Yuanhong Liu, Zijun Xiong, Deliang Fu, Bo Li, Shuguang Wei, Xun Xu, Shengbin Li, Hui Yuan
Software Mentions: 1
Published: over 8 years ago

10.3389/fcimb.2019.00164

Glutathione Activates Type III Secretion System Through Vfr in Pseudomonas aeruginosa
Cited by: 23
Author(s): Yani Zhang, Chao Zhang, Xiaomin Du, Yun Zhou, Weina Kong, Gee W. Lau, Gukui Chen, Gurjeet S. Kohli, Liang Yang, Tietao Wang, Haihua Liang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0217461

Transcriptome profiling of longissimus thoracis muscles identifies highly connected differentially expressed genes in meat type sheep of India
Cited by: 18
Author(s): Reena Arora, Shakti Kumar, Sunil Sudarshan, Mohamed Nadeem Fairoze, Manpreet Kaur, Anju Sharma, Yashila Girdhar, R. M. Sreesujatha, Suresh Devatkal, Sonika Ahlawat, R. K. Vijh, Shilpa Manjunatha
Software Mentions: 1
Published: about 6 years ago

10.3389/fcimb.2019.00192

Indoleamine 2,3-Dioxygenase Activity in Chlamydia muridarum and Chlamydia pneumoniae Infected Mouse Lung Tissues
Cited by: 14
Author(s): Dezső Virók, Tímea Raffai, Dávid Kókai, Dóra Paróczai, Anita Bogdanov, Gábor Veres, László Vécsei, Szilárd Póliska, László Tiszlavicz, Ferenc Somogyvári, Valéria Endrész, Katalin Burián
Software Mentions: 1
Published: about 6 years ago

10.3389/fcimb.2017.00499

Growth of Chlamydia pneumoniae Is Enhanced in Cells with Impaired Mitochondrial Function
Cited by: 18
Author(s): Nadja Käding, Inga Kaufhold, Constanze Müller, Márta Szaszák, Kensuke Shima, Thomas Weinmaier, Rodrigo Lomas, Ana Conesa, Philippe Schmitt‐Kopplin, Thomas Rattei, Jan Rupp
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-015-1528-y

Genome-wide next-generation DNA and RNA sequencing reveals a mutation that perturbs splicing of the phosphatidylinositol glycan anchor biosynthesis class H gene (PIGH) and causes arthrogryposis in Belgian Blue cattle
Cited by: 14
Author(s): Arnaud Sartelet, Wanbo Li, Eric Pailhoux, Christophe Richard, Nico Tamma, Latifa Karim, Corinne Fasquelle, Tom Druet, Wouter Coppieters, Michel Georges, Carole Charlier
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-15-815

Transcriptome profiling in imipenem-selected Acinetobacter baumannii
Cited by: 30
Author(s): Kai‐Chih Chang, Han-Yueh Kuo, Chuan Yi Tang, Cheng-Wei Chang, Chia-Wei Lu, Chih‐Chin Liu, Huei-Ru Lin, Kuan-Hsueh Chen, Ming-Li Liou
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12864-020-07356-6

LncRNAs and their regulatory networks in breast muscle tissue of Chinese Gushi chickens during late postnatal development
Cited by: 13
Author(s): Yuanfang Li, Wenjiao Jin, Bin Zhai, Yi Chen, Guoxi Li, Yanhua Zhang, Yujie Guo, Guirong Sun, Ruili Han, Zhuanjian Li, Hong Li, Yadong Tian, Xiaojun Liu, Xiangtao Kang
Software Mentions: 1
Published: over 4 years ago

10.3390/ani10030510

Mammary Transcriptome Profile during Peak and Late Lactation Reveals Differentially Expression Genes Related to Inflammation and Immunity in Chinese Holstein
Cited by: 8
Author(s): Ziyin Han, Yongliang Fan, Zhangping Yang, Juan J. Loor, Yi Yang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0105267

Genomic Distribution of H3K9me2 and DNA Methylation in a Maize Genome
Cited by: 127
Author(s): Patrick T. West, Qing Li, Lexiang Ji, Steven R. Eichten, Jawon Song, Matthew Vaughn, Robert J. Schmitz, Nathan M. Springer
Software Mentions: 1
Published: almost 11 years ago

10.1128/mSphere.00478-18

Regulation of Epstein-Barr Virus Life Cycle and Cell Proliferation by Histone H3K27 Methyltransferase EZH2 in Akata Cells
Cited by: 23
Author(s): Takaya Ichikawa, Yusuke Okuno, Yoshitaka Sato, Fumi Goshima, Hironori Yoshiyama, Teru Kanda, Hiroshi Kimura, Takayuki Murata
Software Mentions: 1
Published: over 6 years ago

10.3389/fncel.2015.00438

REST-Governed Gene Expression Profiling in a Neuronal Cell Model Reveals Novel Direct and Indirect Processes of Repression and Up-Regulation
Cited by: 9
Author(s): José Manuel García-Manteiga, Silvia Bonfiglio, Lucrezia Folladori, Maria Luisa Malosio, Dejan Lazarevic, Elia Stupka, Davide Cittaro, Jacopo Meldolesi
Software Mentions: 1
Published: over 9 years ago

10.3389/fendo.2018.00308

Pituitary Action of E2 in Prepubertal Grass Carp: Receptor Specificity and Signal Transduction for Luteinizing Hormone and Follicle-Stimulating Hormone Regulation
Cited by: 10
Author(s): Xiangfeng Qin, Yaqian Xiao, Ya Cheng, Jingyi Jia, Xiangjiang Liu, Hongwei Liang, Guiwei Zou, Guangfu Hu
Software Mentions: 1
Published: about 7 years ago

10.3389/fendo.2020.614692

Dietary Oxysterol, 7-Ketocholesterol Accelerates Hepatic Lipid Accumulation and Macrophage Infiltration in Obese Mice
Cited by: 7
Author(s): Jiuyang Chang, Masahiro Koseki, Ayami Saga, Kotaro Kanno, Tomoaki Higo, Daisuke Okuzaki, Takeshi Okada, Haruyuki Inui, Katsunao Tanaka, Masumi Asaji, Yinghong Zhu, Takumi Kawaguchi, Masafumi Ono, Toshiji Saibara, Ikuyo Ichi, Tohru Ohama, Makoto Nishida, Shizuya Yamashita, Yasushi Sakata
Software Mentions: 1
Published: over 4 years ago

10.3389/fendo.2020.00111

Liver Transcriptomic Reveals Novel Pathways of Empagliflozin Associated With Type 2 Diabetic Rats
Cited by: 9
Author(s): Qiuyue Lv, Liang Le, Jiamei Xiang, Baoping Jiang, Sibao Chen, Pei‐Gen Xiao
Software Mentions: 1
Published: over 5 years ago

10.3389/fendo.2020.565858

Hepatic Transcriptome Analysis Revealing the Molecular Pathogenesis of Type 2 Diabetes Mellitus in Zucker Diabetic Fatty Rats
Cited by: 4
Author(s): Chengdong Xia, Xiuli Zhang, Tian-Shu Cao, Jiannong Wang, Cuidan Li, Liya Yue, Kaifeng Niu, Yicheng Shen, Ge Ma, Fei Chen
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0108670

Foxp3 Expression in Macrophages Associated with RENCA Tumors in Mice
Cited by: 21
Author(s): Christel Devaud, Carmen S. Yong, Liza B. John, Jennifer A. Westwood, Connie P.M. Duong, Colin M. House, Delphine Denoyer, Jason Li, Phillip K. Darcy, Michael H. Kershaw
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2164-15-520

Global analysis of ZNF217 chromatin occupancy in the breast cancer cell genome reveals an association with ERalpha
Cited by: 29
Author(s): Seth Frietze, Henriette O’Geen, Laurie E. Littlepage, Catalina Simion, Colleen Sweeney, Peggy J. Farnham, Sheryl R. Krig
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-015-1623-0

Characterization of a novel chicken muscle disorder through differential gene expression and pathway analysis using RNA-sequencing
Cited by: 198
Author(s): Marie Mutryn, Erin M. Brannick, Weixuan Fu, William R. Lee, Behnam Abasht
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0161256

The Genome-Wide Analysis of Carcinoembryonic Antigen Signaling by Colorectal Cancer Cells Using RNA Sequencing
Cited by: 16
Author(s): Olga Bajenova, А. В. Горбунова, Igor Evsyukov, Mikhail Rayko, Svetlana Gapon, Ekaterina Bozhokina, A.A. Shishkin, Stephen J. O’Brien
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0090989

Deep RNA Sequencing Reveals Hidden Features and Dynamics of Early Gene Transcription in Paramecium bursaria Chlorella Virus 1
Cited by: 37
Author(s): Guillaume Blanc, Michael Mozar, Irina V. Agarkova, James R. Gurnon, Giane M. Yanai-Balser, Janet M. Rowe, Yuannan Xia, Jean-Jack M. Riethoven, David D. Dunigan, James L. Van Etten
Software Mentions: 1
Published: over 11 years ago

10.3389/fgene.2018.00256

Messenger RNA Sequencing and Pathway Analysis Provide Novel Insights Into the Susceptibility to Salmonella enteritidis Infection in Chickens
Cited by: 16
Author(s): Peng Li, Wenlei Fan, Nadia Everaert, Ranran Liu, Qinghe Li, Maiqing Zheng, Huanxian Cui, Guiping Zhao, Jie Wen
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0025400

Transcriptional Profiling of Endocrine Cerebro-Osteodysplasia Using Microarray and Next-Generation Sequencing
Cited by: 9
Author(s): Piya Lahiry, Leo J. Lee, Brendan J. Frey, C. Anthony Rupar, Victoria Mok Siu, Benjamin J. Blencowe, Robert A. Hegele
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0136932

Network Modeling Reveals Cross Talk of MAP Kinases during Adaptation to Caspofungin Stress in Aspergillus fumigatus
Cited by: 57
Author(s): Robert Altwasser, Clara Baldin, Jakob Weber, Reinhard Guthke, Olaf Kniemeyer, Axel A. Brakhage, Jörg Linde, Vito Valiante
Software Mentions: 1
Published: almost 10 years ago

10.18632/oncotarget.17958

Identification of SRF-E2F1 fusion transcript in EWSR-negative myoepithelioma of the soft tissue
Cited by: 14
Author(s): Milena Urbini, Annalisa Astolfi, Valentina Indio, Giuseppe Tarantino, Salvatore Serravalle, Maristella Saponara, Margherita Nannini, Alessandro Gronchi, Marco Fiore, Roberta Maestro, Monica Brenca, Angelo Paolo Dei Tos, Gian Paolo Dagrada, Tiziana Negri, Silvana Pilotti, Paolo G. Casali, Guido Biasco, Andrea Pession, Silvia Stacchiotti, Maria Abbondanza Pantaleo
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0219413

Transcriptional Differences in Peanut (Arachis hypogaea L.) Seeds at the Freshly Harvested, After-ripening and Newly Germinated Seed Stages: Insights into the Regulatory Networks of Seed Dormancy Release and Germination
Cited by: 13
Author(s): Pingli Xu, Guiying Tang, Weipei Cui, Guangxia Chen, Changle Ma, Jieqiong Zhu, Pengxiang Li, Lei Shan, Zhanji Liu, Shubo Wan
Software Mentions: 1
Published: over 5 years ago

10.1128/mSystems.00035-17

Transcriptome Analysis of Polyhydroxybutyrate Cycle Mutants Reveals Discrete Loci Connecting Nitrogen Utilization and Carbon Storage in <i>Sinorhizobium meliloti</i>
Cited by: 16
Author(s): Maya D’Alessio, Ricardo Nordeste, Andrew C. Doxey, Trevor C. Charles
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2020.00244

Genome-Wide Characterization of Alternative Splicing Events and Their Responses to Cold Stress in Tilapia
Cited by: 23
Author(s): Bi Jun Li, Zong Xian Zhu, Qin Hui, Zhijun Meng, Haoran Lin, Jun Xia
Software Mentions: 1
Published: over 5 years ago

10.3389/fgene.2019.00522

Transcriptome Profiling Insights the Feature of Sex Reversal Induced by High Temperature in Tongue Sole Cynoglossus semilaevis
Cited by: 24
Author(s): Jinxiang Liu, Xiaobing Liu, Chaofan Jin, Xinxin Du, Yan He, Quanqi Zhang
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0049423

Simultaneous RNA-Seq Analysis of a Mixed Transcriptome of Rice and Blast Fungus Interaction
Cited by: 220
Author(s): Yoshihiro Kawahara, Youko Oono, Hajime Kanamori, Takashi Matsumoto, Takeshi Itoh, Eiichi Minami
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0138982

Whose Gene Is It Anyway? The Effect of Preparation Purity on Neutrophil Transcriptome Studies
Cited by: 36
Author(s): Huw B. Thomas, Robert J. Moots, Steven W. Edwards, Helen L. Wright
Software Mentions: 1
Published: almost 10 years ago

10.1128/mSystems.00065-17

Functional Changes in the Gut Microbiome Contribute to Transforming Growth Factor β-Deficient Colon Cancer
Cited by: 44
Author(s): Scott G. Daniel, Corbie Ball, David G. Besselsen, Tom Doetschman, Bonnie Hurwitz
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0124295

Functional Synergy between Cholecystokinin Receptors CCKAR and CCKBR in Mammalian Brain Development
Cited by: 30
Author(s): Sadako Nishimura, Kaya Bilgüvar, Keiko Ishigame, Nenad Šestan, Murat Günel, Angeliki Louvi
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2164-13-473

Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq
Cited by: 73
Author(s): Kyung-Do Park, Jongsun Park, Junsu Ko, Byung Chul Kim, Heui‐Soo Kim, Kung Ahn, Kyoung-Tag Do, Hansol Choi, Hak-Min Kim, Sanghoon Song, Sung-Hoon Lee, Sungwoong Jho, Hong Sik Kong, Young Mok Yang, Byung-Hak Jhun, Chulhong Kim, Tae-Hyung Kim, Seungwoo Hwang, Jong Bhak, Hak-Kyo Lee, Byung-Wook Cho
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0080306

Comprehensive Analysis of Long Non-Coding RNAs in Ovarian Cancer Reveals Global Patterns and Targeted DNA Amplification
Cited by: 72
Author(s): Rozita Akrami, Anders Jacobsen, Jessica I. Hoell, Nikolaus Schultz, Chris Sander, Erik Larsson
Software Mentions: 1
Published: over 11 years ago