pypi: TopHat | Projects | Ecosyste.ms: Papers

10.3390/cancers13174276

Usp22 Overexpression Leads to Aberrant Signal Transduction of Cancer-Related Pathways but Is Not Sufficient to Drive Tumor Formation in Mice
Cited by: 1
Author(s): Xi Kuang, Michael McAndrew, Lisa Maria Mustachio, Yi Jen Chen, Boyko S. Atanassov, Kevin Lin, Yao Lu, Jianjun Shen, Andrew P. Salinger, Timothy L. Macatee, Sharon Y.R. Dent, Evangelia Koutelou
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0227020

Heterogeneous root zone salinity mitigates salt injury to Sorghum bicolor (L.) Moench in a split-root system
Cited by: 5
Author(s): Huawen Zhang, Runfeng Wang, Hailian Wang, Bin Liu, Ming Xu, Yanan Guan, Yanbing Yang, Ling Qin, Erying Chen, Feifei Li, Huang Rui, Yufei Zhou
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-49177-y

Characterisation and localisation of the endocannabinoid system components in the adult human testis
Cited by: 46
Author(s): John Nielsen, Antoine Rolland, Ewa Rajpert–De Meyts, Christian Janfelt, Anne Jørgensen, Sofia B. Winge, David M. Kristensen, Anders Juul, Frédéric Chalmel, Bernard Jégou, Niels E. Skakkebæk
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0227102

Ontogenic mRNA expression of RNA modification writers, erasers, and readers in mouse liver
Cited by: 12
Author(s): Liming Chen, Pei Wang, Raman Bahal, José E. Manautou, Xiao‐bo Zhong
Software Mentions: 1
Published: over 5 years ago

10.1186/s13075-018-1754-1

Aberrant expression of interleukin-23-regulated miRNAs in T cells from patients with ankylosing spondylitis
Cited by: 12
Author(s): Ning‐Sheng Lai, Hui-Chun Yu, Chien-Hsueh Tung, Kuang-Yung Huang, Huey W. Huang, Ming‐Chi Lu
Software Mentions: 1
Published: over 6 years ago

10.1016/j.cell.2015.12.025

Trim28 Haploinsufficiency Triggers Bi-stable Epigenetic Obesity
Cited by: 153
Author(s): Kevin Dalgaard, Kathrin Landgraf, Steffen Heyne, Adelheid Lempradl, John Longinotto, Klaus Gossens, Marius Ruf, Michael Orthofer, Ruslan Strogantsev, Madhan Selvaraj, Tess Tsai Hsiu Lu, Eduard Casas, Raffaele Teperino, M. Azim Surani, Ilona Zvetkova, Debra Rimmington, Y.C. Loraine Tung, Brian Y.H. Lam, Rachel Larder, Giles S.H. Yeo, Stephen O’Rahilly, Tanya Vavouri, Emma Whitelaw, Josef Penninger, Thomas Jenuwein, Ching‐Lung Cheung, Anne C. Ferguson-Smith, Anthony P. Coll, Antje Körner, J. Andrew Pospisilik
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0099720

Differences in Muscle Transcriptome among Pigs Phenotypically Extreme for Fatty Acid Composition
Cited by: 57
Author(s): Anna Puig-Oliveras, Yuliaxis Ramayo-Caldas, Jordi Corominas, Jordi Estellé, Dafne Pérez-Montarelo, Nicholas J. Hudson, J. Casellas, Josep María Folch, María Ballester
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0169598

Transcriptomic Analysis of Calonectria pseudoreteaudii during Various Stages of Eucalyptus Infection
Cited by: 13
Author(s): Xiaozhen Ye, Hongyi Liu, Yajie Jin, Mengmeng Guo, Aizhen Huang, Quanzhu Chen, Wenhui Guo, Feiping Zhang, Li Feng
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0135159

Constitutive Activation of an Anthocyanin Regulatory Gene PcMYB10.6 Is Related to Red Coloration in Purple-Foliage Plum
Cited by: 33
Author(s): Chao Gu, Liao Liao, Hui Zhou, Lu Wang, Ximing Deng, Yuepeng Han
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-018-5356-8

Joint QTL mapping and transcriptome sequencing analysis reveal candidate flowering time genes in Brassica napus L
Cited by: 44
Author(s): Hongju Jian, Aoxiang Zhang, Jinqi Ma, Tengyue Wang, Bo Yang, Lan Shuan Shuang, Min Liu, Jiana Li, Xinhua Xu, Andrew H. Paterson, Liezhao Liu
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0188715

Deletion of lynx1 reduces the function of α6* nicotinic receptors
Cited by: 14
Author(s): Rell L. Parker, Heidi C. O’Neill, Beverley M. Henley, Charles R. Wageman, Ryan M. Drenan, Michael J. Marks, Julie M. Miwa, Sharon R. Grady, Henry A. Lester
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0149061

Identification of Targets of CUG-BP, Elav-Like Family Member 1 (CELF1) Regulation in Embryonic Heart Muscle
Cited by: 29
Author(s): Yotam Blech-Hermoni, Twishasri Dasgupta, Ryan J. Coram, Andrea N. Ladd
Software Mentions: 1
Published: over 9 years ago

10.1186/s13578-019-0287-x

The Y-linked proto-oncogene TSPY contributes to poor prognosis of the male hepatocellular carcinoma patients by promoting the pro-oncogenic and suppressing the anti-oncogenic gene expression
Cited by: 11
Author(s): Tatsuo Kido, Yun‐Fai Chris Lau
Software Mentions: 1
Published: over 6 years ago

10.1186/s13578-021-00590-9

Neuromuscular junction-specific genes screening by deep RNA-seq analysis
Cited by: 4
Author(s): Hui Tao, Hongyang Jing, Xiaojing Lai
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms221810106

Efficient Neutrophil Activation Requires Two Simultaneous Activating Stimuli
Cited by: 21
Author(s): Sanne Mol, Florianne Hafkamp, Laura Varela, Neena Simkhada, Esther W. M. Taanman-Kueter, Sander W. Tas, Marca H. M. Wauben, Tom Groot Kormelink, Esther C. de Jong
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13578-021-00559-8

Deletion at an 1q24 locus reveals a critical role of long noncoding RNA DNM3OS in skeletal development
Cited by: 3
Author(s): Ting Yu, Qiu fan Xu, Si Yang Li, Hui Huang, Sarah Dugan, Lei Shao, Jennifer A. Roggenbuck, Xiao tong Liu, Huai ze Liu, Betsy A. Hirsch, Ya Shen, Chen Liu, Steven Y. Cheng
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.17187

Downregulated long noncoding RNA ALDBGALG0000005049 induces inflammation in chicken muscle suffered from selenium deficiency by regulating stearoyl-CoA desaturase
Cited by: 15
Author(s): Rui-Feng Fan, Changyu Cao, Xiaona Zhao, Qunxiang Shi, Jinxin Zhao, Shiwen Xu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-019-5481-z

Rootstock-induced molecular responses associated with drought tolerance in sweet orange as revealed by RNA-Seq
Cited by: 21
Author(s): Luana Pereira Gonçalves, Raquel L. Boscariol-Camargo, Marco Aurélio Takita, Marcos Antônio Machado, Walter S. dos Soares Filho, Márcio Gilberto Cardoso Costa
Software Mentions: 1
Published: over 6 years ago

10.1186/2045-3701-2-37

Strategies to identify long noncoding RNAs involved in gene regulation
Cited by: 69
Author(s): Catherine Lee, Nobuaki Kikyo
Software Mentions: 1
Published: over 13 years ago

10.1186/s13578-018-0251-1

A role of Pumilio 1 in mammalian oocyte maturation and maternal phase of embryogenesis
Cited by: 15
Author(s): Winifred Mak, Jing Xia, Ee Chun Cheng, Katie M. Lowther, Haifan Lin
Software Mentions: 1
Published: almost 7 years ago

10.1186/2045-3701-2-43

RNA-seq analysis of synovial fibroblasts brings new insights into rheumatoid arthritis
Cited by: 40
Author(s): Daniel P. Heruth, Margaret Gibson, Dmitry N. Grigoryev, Li Qin Zhang, Shui Qing Ye
Software Mentions: 1
Published: over 13 years ago

10.1186/s12964-015-0106-x

Stimulus-dependent differences in signalling regulate epithelial-mesenchymal plasticity and change the effects of drugs in breast cancer cell lines
Cited by: 43
Author(s): Joseph Cursons, Karl Johan Leuchowius, Mark Waltham, Eva Tomaskovic-Crook, Momeneh Foroutan, Cameron P. Bracken, Andrew Redfern, Edmund J. Crampin, Ian P. Street, Melissa J. Davis, Erik W. Thompson
Software Mentions: 1
Published: about 10 years ago

10.1186/s12964-020-00678-8

Reprogramming of synovial macrophage metabolism by synovial fibroblasts under inflammatory conditions
Cited by: 28
Author(s): Noritaka Saeki, Yuuki Imai
Software Mentions: 1
Published: over 4 years ago

10.1186/s12964-016-0146-x

Neurogenin 3 is regulated by neurotrophic tyrosine kinase receptor type 2 (TRKB) signaling in the adult human exocrine pancreas
Cited by: 8
Author(s): Michael J. Shamblott, Marci O’Driscoll, Danielle L. Gomez, Dustin L. McGuire
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41418-018-0243-z

miR-92b-3p-TSC1 axis is critical for mTOR signaling-mediated vascular smooth muscle cell proliferation induced by hypoxia
Cited by: 40
Author(s): Jihui Lee, Jeongyeon Heo, Hyunjin Kang
Software Mentions: 1
Published: over 6 years ago

10.1038/cdd.2016.135

Chromatin remodeling during in vivo neural stem cells differentiating to neurons in early Drosophila embryos
Cited by: 20
Author(s): Youqiong Ye, Min Li, Liang Gu, Xiaolong Chen, Jiejun Shi, Xiaobai Zhang, Cizhong Jiang
Software Mentions: 1
Published: over 8 years ago

10.1038/s41418-019-0433-3

Autologous micrograft accelerates endogenous wound healing response through ERK-induced cell migration
Cited by: 26
Author(s): Martina Balli, Francesca Vitali, Adrian Janiszewski, Ellen Caluwé, Álvaro Cortés-Calabuig, Sébastien Carpentier, Robin Duelen, Flavio Lorenzo Ronzoni, Lukas Marcelis, Francesca Maria Bosisio, Riccardo Bellazzi, Aernout Luttun, Maria Gabriella Cusella De Angelis, Gabriele Ceccarelli, Frederic Lluı́s, Maurilio Sampaolesi
Software Mentions: 1
Published: almost 6 years ago

10.1038/s41418-020-00694-8

Kdm6a suppresses the alternative activation of macrophages and impairs energy expenditure in obesity
Cited by: 17
Author(s): Jun Chen, Xing Xu, Yan Li, Li Fan, Jianjun Zhang, Qin Xu, Wantao Chen, Wei Yan, Xu Wang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41418-019-0289-6

Thymidylate synthase maintains the de-differentiated state of triple negative breast cancers
Cited by: 30
Author(s): Aarif Siddiqui, Paradesi Naidu Gollavilli, Annemarie Schwab, Maria Eleni Vazakidou, Pelin G. Ersan, Mallika Ramakrishnan, Dick Pluim, Si’Ana A. Coggins, Özge Saatçi, Laura Annaratone, Jan H.M. Schellens, Baek Kim, Irfan A. Asangani, Suhail Ahmed Kabeer Rasheed, Caterina Marchiò, Özgür Şahin, Paolo Ceppi
Software Mentions: 1
Published: over 6 years ago

10.1038/cddis.2016.479

Translational upregulation of Aurora-A by hnRNP Q1 contributes to cell proliferation and tumorigenesis in colorectal cancer
Cited by: 26
Author(s): Chin‐Feng Lai, Yu Chuan Huang, Jenq Chang Lee, Joseph T. Tseng, Kung Chao Chang, Yen–Ju Chen, Nai Jhu Ding, Pao Hsuan Huang, Wen Chang Chang, Bo Lin, Ruo Yu Chen, Yu-Chu Wang, Yi Chien Lai, Liang‐Yi Hung
Software Mentions: 1
Published: over 8 years ago

10.1038/cddis.2017.168

Restricting the induction of NGF in ovarian stroma engenders selective follicular activation through the mTOR signaling pathway
Cited by: 17
Author(s): Yuanlin He, Xiaoxu Peng, Theodore Y. Wu, Weijie Yang, Wenwen Liu, Jing Zhang, Yiping Su, Feifei Kong, Xiaowei Dou, Jing Li
Software Mentions: 1
Published: about 8 years ago

10.1038/cddis.2017.132

Metabolic and molecular insights into an essential role of nicotinamide phosphoribosyltransferase
Cited by: 51
Author(s): Li Q. Zhang, Leon van Haandel, Min Xiong, Peixin Huang, Daniel P. Heruth, Charlie Bi, Roger Gaedigk, Xun Jiang, Ding You Li, Gerald J. Wyckoff, Dmitry N. Grigoryev, Li Gao, Linheng Li, Min Wu, J. Steven Leeder, Shui Qing Ye
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0132345

Next-Generation Sequencing Techniques Reveal that Genomic Imprinting Is Absent in Day-Old Gallus gallus domesticus Brains
Cited by: 15
Author(s): Qiong Wang, Kaiyang Li, Daixi Zhang, Junying Li, Guiyun Xu, Jiangxia Zheng, Ning Yang, Lujiang Qu
Software Mentions: 1
Published: about 10 years ago

10.1038/cddis.2016.343

AP1 transcription factors are required to maintain the peripheral taste system
Cited by: 8
Author(s): Jayasha Shandilya, Yankun Gao, Tapan K. Nayak, Stefan G. E. Roberts, Kathryn F. Medler
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0113170

Deep Sequencing of the Murine Olfactory Receptor Neuron Transcriptome
Cited by: 69
Author(s): Ninthujah Kanageswaran, Marilen Demond, Maximilian Nagel, Benjamin S. P. Schreiner, Sabrina Baumgart, Paul Scholz, Janine Altmüller, Christian Becker, Julia F. Doerner, Heike Conrad, Sonja Oberland, Christian H. Wetzel, Eva M. Neuhaus, Hanns Hatt, Günter Gisselmann
Software Mentions: 1
Published: over 10 years ago

10.1038/cddis.2017.179

BASP1 interacts with oestrogen receptor α and modifies the tamoxifen response
Cited by: 21
Author(s): Lindsey A. Marsh, Samantha Carrera, Jayasha Shandilya, Kate J Heesom, Andrew D. Davidson, Kathryn F. Medler, Stefan G. E. Roberts
Software Mentions: 1
Published: about 8 years ago

10.1038/s41419-021-03647-2

MLL3 suppresses tumorigenesis through regulating TNS3 enhancer activity
Cited by: 10
Author(s): Jingwei Zheng, Chenyu Wang, Chuan Gao, Qiu Xiao, Cheng-Wei Huang, Min Wu, Lianyun Li
Software Mentions: 1
Published: over 4 years ago

10.1007/s00204-021-03084-2

Dynamic alteration in miRNA and mRNA expression profiles at different stages of chronic arsenic exposure-induced carcinogenesis in a human cell culture model of skin cancer
Cited by: 18
Author(s): Mayukh Banerjee, Ana Paula Ferragut Cardoso, Laila Al-Eryani, Jianmin Pan, Theodore S. Kalbfleisch, Sudhir Srivastava, N. Shesh, J. Christopher States
Software Mentions: 1
Published: about 4 years ago

10.1038/s41419-019-1408-5

ER stress sensor, glucose regulatory protein 78 (GRP78) regulates redox status in pancreatic cancer thereby maintaining “stemness”
Cited by: 66
Author(s): Patricia Dauer, Nikita Sharma, Vineet Gupta, Brittany Durden, Roey Hadad, Santanu Banerjee, Vikas Dudeja, Ashok K. Saluja, Sulagna Banerjee
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-020-6732-8

A chromosome-scale assembly of the smallest Dothideomycete genome reveals a unique genome compaction mechanism in filamentous fungi
Cited by: 6
Author(s): Bo Wang, Xiaofei Liang, Mark L. Gleason, Tom Hsiang, Rong Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-019-6244-6

Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats
Cited by: 5
Author(s): Hong Zeng, Bao‐Fu Yu, Nan Liu, Yanyan Yang, Huayi Xing, Xiao-xie Liu, Mouwang Zhou
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-03345-5

Mtu1 defects are correlated with reduced osteogenic differentiation
Cited by: 5
Author(s): Qiufen He, Qiong Zhao, Qianqian Li, Ruolang Pan, Xiongfeng Li, Ye Chen
Software Mentions: 1
Published: over 4 years ago

10.1038/s41419-018-0837-x

MicroRNA-143 targets ERK5 in granulopoiesis and predicts outcome of patients with acute myeloid leukemia
Cited by: 18
Author(s): Jens-Uwe Hartmann, Daniela Bräuer-Hartmann, Miroslava Kardošová, Antje Wurm, Franziska Wilke, Cindy Schödel, Dennis Gerloff, Christiane Katzerke, Rosanna Krakowsky, Carolina Yaeko Namasu, Marius Bill, Sebastian Schwind, Carsten Müller‐Tidow, Dietger Niederwieser, Meritxell Alberich-Jordà, Gerhard Behre
Software Mentions: 1
Published: about 7 years ago

10.1038/cddis.2015.305

Oxidative phosphorylation-dependent regulation of cancer cell apoptosis in response to anticancer agents
Cited by: 94
Author(s): Neelu Yadav, Sandeep Kumar, Timothy Marlowe, Ajay Kumar Chaudhary, Rahul Kumar, J Wang, Jordan O’Malley, Patrick M. Boland, Srinivas Jayanthi, Thallapuranam Krishnaswamy Suresh Kumar, Nagendra Yadava, Dhyan Chandra
Software Mentions: 1
Published: over 9 years ago

10.1038/s41419-018-0421-4

Synergistic actions of FGF2 and bone marrow transplantation mitigate radiation-induced intestinal injury
Cited by: 18
Author(s): Byoung Hyuck Kim, Hee Won Jung, Seok Hyun Seo, Hong-Jae Shin, Junhyun Kwon, Jae Myoung Suh
Software Mentions: 1
Published: over 7 years ago

10.1038/s41419-018-1200-y

Cul4 E3 ubiquitin ligase regulates ovarian cancer drug resistance by targeting the antiapoptotic protein BIRC3
Cited by: 25
Author(s): Xiaoyan Hu, Yan Meng, Lian Xu, Lei Qiu, Mingtian Wei, Dan Su, Qi Xu, Ziqiang Wang, Shengyong Yang, Cong Liu, Junhong Han
Software Mentions: 1
Published: over 6 years ago

10.1038/cddis.2017.521

The fragile X mental retardation protein regulates tumor invasiveness-related pathways in melanoma cells
Cited by: 31
Author(s): Francesca Zalfa, Vincenzo Panasiti, Simone Carotti, Maria Zingariello, Giuseppe Perrone, Laura Sancillo, Laura Pacini, Flavie Luciani, Vincenzo Roberti, Silvia D’Amico, Rosa Coppola, Simona Osella Abate, Rosa Alba Rana, Anastasia De Luca, Mark Fiers, Valentina Melocchi, Fabrizio Bianchi, Maria Giulia Farace, Tilmann Achsel, Jean–Christophe Marine, Sergio Morini, Claudia Bagni
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0216893

CD45Rb-low effector T cells require IL-4 to induce IL-10 in FoxP3 Tregs and to protect mice from inflammation
Cited by: 11
Author(s): Mark B. Jones, Carlos Álvarez, Jenny L. Johnson, Julie Y. Zhou, Nathan Morris, Brian A. Cobb
Software Mentions: 1
Published: about 6 years ago

10.1038/s41419-019-1925-2

Long noncoding RNA BFAL1 mediates enterotoxigenic Bacteroides fragilis-related carcinogenesis in colorectal cancer via the RHEB/mTOR pathway
Cited by: 55
Author(s): Yu-Jie Bao, Jia-Yin Tang, Yun Qian, Tiantian Sun, Huimin Chen, Zhaofei Chen, Da Sun, Ming Zhong, Haoyan Chen, Jie Hong, Yingxuan Chen, Jing‐Yuan Fang
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0135810

RNA-Seq Analysis of Abdominal Fat Reveals Differences between Modern Commercial Broiler Chickens with High and Low Feed Efficiencies
Cited by: 53
Author(s): Zhuo Zhu, Susan J. Lamont, William R. Lee, Behnam Abasht
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0204931

Circular RNA and mRNA profiling reveal competing endogenous RNA networks during avian leukosis virus, subgroup J-induced tumorigenesis in chickens
Cited by: 17
Author(s): Lingling Qiu, Guobin Chang, Yue Bi, Xiangping Liu, Guohong Chen
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0191407

Circulating neutrophil transcriptome may reveal intracranial aneurysm signature
Cited by: 25
Author(s): Vincent M. Tutino, Kerry E. Poppenberg, Kaiyu Jiang, James N. Jarvis, Yijun Sun, Ashish Sonig, Adnan H. Siddiqui, Kenneth V. Snyder, Elad I. Levy, John Kolega
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms221810036

Quinolone Resistance of Actinobacillus pleuropneumoniae Revealed through Genome and Transcriptome Analyses
Cited by: 4
Author(s): Xiaoping Ma, Bowen Zheng, Jiafan Wang, Gen Li, Sanjie Cao, Yiping Wen, Xiaobo Huang, Zhuang Zuo, Zhijun Zhong, Yu Gu
Software Mentions: 1
Published: almost 4 years ago

10.1038/cddis.2017.99

Forkhead box A3 attenuated the progression of fibrosis in a rat model of biliary atresia
Cited by: 16
Author(s): Rui Dong, Yifan Yang, Zhen Shen, Chengchao Zheng, Jiang Zhu, Yanlei Huang, Zhien Zhang, Shan Zheng, Gong Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-019-1613-2

Central role of IP3R2-mediated Ca2+ oscillation in self-renewal of liver cancer stem cells elucidated by high-signal ER sensor
Cited by: 20
Author(s): Cuiwei Sun, Bo Shui, Wei Zhao, Hui Liu, Wenwen Li, Jane C. Lee, Robert Doran, Frank K. Lee, Tao Sun, Qing Sunny Shen, Xianhua Wang, Shaun Reining, Michael I. Kotlikoff, Zhiqian Zhang, Heping Cheng
Software Mentions: 1
Published: about 6 years ago

10.1038/s41419-019-2088-x

Characterization of the role of TMEM45A in cancer cell sensitivity to cisplatin
Cited by: 8
Author(s): Kathleen Schmit, Jiawei Chen, Sophie Ayama-Canden, Maude Fransolet, Laure Finet, Catherine Demazy, Lionel D’Hondt, Carlos Graux, Carine Michiels
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0094968

Heat Shock Alters the Expression of Schizophrenia and Autism Candidate Genes in an Induced Pluripotent Stem Cell Model of the Human Telencephalon
Cited by: 39
Author(s): Mingyan Lin, Dejian Zhao, Anastasia Hrabovsky, Erika Pedrosa, Deyou Zheng, Herbert M. Lachman
Software Mentions: 1
Published: over 11 years ago

10.1038/s41419-018-0604-z

The novel 19q13 KRAB zinc-finger tumour suppressor ZNF382 is frequently methylated in oesophageal squamous cell carcinoma and antagonises Wnt/β-catenin signalling
Cited by: 23
Author(s): Chong Zhang, Tingxiu Xiang, Shuman Li, Lin Ye, Yixiao Feng, Lijiao Pei, Lili Li, Xiangyu Wang, Ryan Sun, Guosheng Ren, Qian Tao
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0181656

The exported chaperone Hsp70-x supports virulence functions for Plasmodium falciparum blood stage parasites
Cited by: 43
Author(s): Sarah C. Charnaud, Matthew W. A. Dixon, Catherine Q Nie, Lia Chappell, Paul R Sanders, Thomas Nebl, Eric Hanssen, Matthew Berriman, Jo‐Anne Chan, Adam J. Blanch, James G. Beeson, Julian C. Rayner, Jude M. Przyborski, Leann Tilley, Brendan S. Crabb, Paul R. Gilson
Software Mentions: 1
Published: about 8 years ago

10.1038/s41419-018-0877-2

TGF-β1-SOX9 axis-inducible COL10A1 promotes invasion and metastasis in gastric cancer via epithelial-to-mesenchymal transition
Cited by: 108
Author(s): Tingting Li, Haipeng Huang, Guangyao Shi, Liying Zhao, Tuanjie Li, Ze Zhang, Ruoyan Liu, Yanfeng Hu, Hao Líu, Jiang Yu, Guoxin Li
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-52599-3

Genome-wide transcriptional profiling for elucidating the effects of brassinosteroids on Glycine max during early vegetative development
Cited by: 11
Author(s): Li Song, Wei Chen, Qiuming Yao, Binhui Guo, Babu Valliyodan, Wenfei Wang, Henry T. Nguyen
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-2552-7

ZNF746/PARIS overexpression induces cellular senescence through FoxO1/p21 axis activation in myoblasts
Cited by: 12
Author(s): Ju‐Hyeon Bae, Hyeon‐Ju Jeong, Hyebeen Kim, Young-Eun Leem, Dongryeol Ryu, Sang Chul Park, Yun‐Il Lee, Sung Chun Cho, Jong‐Sun Kang
Software Mentions: 1
Published: about 5 years ago

10.18632/oncotarget.18584

Differential gene and lncRNA expression in the lower thoracic spinal cord following ischemia/reperfusion-induced acute kidney injury in rats
Cited by: 13
Author(s): Qingquan Liu, Hui Liu, Zhigang He, Shijie Zhang, Baowen Liu, Le Wang, Wenhui Qiu, Qing Xu, Hong‐Bing Xiang, Yongman Lv
Software Mentions: 1
Published: about 8 years ago

10.1038/s41419-021-04129-1

PRMT7 targets of Foxm1 controls alveolar myofibroblast proliferation and differentiation during alveologenesis
Cited by: 7
Author(s): Huacheng He, Jilin Chen, Jian Zhao, Peizhun Zhang, Yulong Qiao, Hang Wan, Jincheng Wang, Mei Mei, Shilai Bao, Qiuling Li
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0231898

Podocyte RNA sequencing reveals Wnt- and ECM-associated genes as central in FSGS
Cited by: 8
Author(s): Éva Nóra Bukosza, Klaus Kratochwill, Christoph Kornauth, Helga Schachner, Christoph Aufricht, Christoph A. Gebeshuber
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0137157

Transcriptome Characterization of Developing Bean (Phaseolus vulgaris L.) Pods from Two Genotypes with Contrasting Seed Zinc Concentrations
Cited by: 13
Author(s): Carolina Astudillo-Reyes, Andrea C. Fernandez, Karen A. Cichy
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41420-018-0134-6

Epigenetic regulation of NfatC1 transcription and osteoclastogenesis by nicotinamide phosphoribosyl transferase in the pathogenesis of arthritis
Cited by: 13
Author(s): Xuanan Li, Shamima Islam, Min Xiong, Ndona N. Nsumu, Mark W. Lee, Li Qin Zhang, Yasuyoshi Ueki, Daniel P. Heruth, Guanghua Lei, Shui Qing Ye
Software Mentions: 1
Published: over 6 years ago

10.1038/s41420-018-0072-3

Combined effects of FH (E404D) and ACOX2 (R409H) cause metabolic defects in primary cardiac malignant tumor
Cited by: 7
Author(s): Xiangyu Zhou, Min Xu, Weijia Zeng, Zhongzhong Chen, Guohui Lu, Yun Gong, Richard H. Finnell, Huasheng Xiao, Bin Qiao, Hongyan Wang
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-019-53239-6

The DOT1L inhibitor Pinometostat decreases the host-response against infections: Considerations about its use in human therapy
Cited by: 18
Author(s): Laura Marcos-Villar, Amelia Nieto
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0060837

Generation of Mast Cells from Mouse Fetus: Analysis of Differentiation and Functionality, and Transcriptome Profiling Using Next Generation Sequencer
Cited by: 8
Author(s): Nobuyuki Fukuishi, Yuusuke Igawa, Tomoyo Kunimi, Hirofumi Hamano, Masao Toyota, Hironobu Takahashi, Hiromichi Kenmoku, Yasuyuki Yagi, Nobuaki Matsui, Masaaki Akagi
Software Mentions: 1
Published: over 12 years ago

10.1038/celldisc.2017.2

Malat1 regulates myogenic differentiation and muscle regeneration through modulating MyoD transcriptional activity
Cited by: 81
Author(s): Xiaona Chen, Liangqiang He, Yu Zhao, Yuying Li, Suyang Zhang, Kun Sun, Kam-Hei So, Fengyuan Chen, Liang Zhou, Leina Lu, Lijun Wang, Zhu Xihua, Xichen Bao, Miguel A. Esteban, Shinichi Nakagawa, Kannanganattu V. Prasanth, Zhenguo Wu, Hao Sun, Huating Wang
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms221910288

Identification of Estrogen Signaling in a Prioritization Study of Intraocular Pressure-Associated Genes
Cited by: 4
Author(s): Hannah Youngblood, E.J. Parker, Jingwen Cai, Kristin Perkumas, Hongfang Yu, Jason Sun, Sylvia B. Smith, Kathryn E. Bollinger, Janey L. Wiggs, Louis R. Pasquale, Michael A. Hauser, W. Daniel Stamer, Yutao Liu
Software Mentions: 1
Published: almost 4 years ago

10.1038/celldisc.2017.46

Generation of iPSC-derived limb progenitor-like cells for stimulating phalange regeneration in the adult mouse
Cited by: 13
Author(s): Ying Chen, Hanqian Xu, Gufa Lin
Software Mentions: 1
Published: over 7 years ago

10.1038/celldisc.2016.7

Negative regulation of DNMT3A de novo DNA methylation by frequently overexpressed UHRF family proteins as a mechanism for widespread DNA hypomethylation in cancer
Cited by: 67
Author(s): Yuanhui Jia, Pishun Li, Fang Lan, Hongxia Zhu, Liangliang Xu, Hao Cheng, Junying Zhang, Fĕi Li, Yan Feng, Yan Li, Jialun Li, Ruiping Wang, James X. Du, Jiwen Li, Taiping Chen, Hongbin Ji, Jackie Han, Weiwu Yu, Qihan Wu, Jiemin Wong
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-019-6095-1

Genomic characteristics and comparative genomics analysis of the endophytic fungus Sarocladium brachiariae
Cited by: 20
Author(s): Yang Yang, Xiaobao Liu, Jing Cai, Yipeng Chen, Boxun Li, Zhi‐Kai Guo, Huang Guixiu
Software Mentions: 1
Published: over 5 years ago

10.1038/celldisc.2017.22

Metformin-induced ablation of microRNA 21-5p releases Sestrin-1 and CAB39L antitumoral activities
Cited by: 57
Author(s): Claudio Pulito, Federica Mori, Andrea Sacconi, Frauke Goeman, Maria Ferraiuolo, Patrizia Pasanisi, C Campagnoli, Franco Berrino, Maurizio Fanciulli, Rebecca J. Ford, Massimo Levrero, Natalia Pediconi, Ludovica Ciuffreda, Michèle Milella, Gregory R. Steinberg, Mario Cioce, Paola Muti, Sabrina Strano, Giovanni Blandino
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0121117

Dual RNA Sequencing Reveals the Expression of Unique Transcriptomic Signatures in Lipopolysaccharide-Induced BV-2 Microglial Cells
Cited by: 35
Author(s): Amitabh Das, Jin Choul Chai, Sun Hwa Kim, Kyoung Sun Park, Young Seek Lee, Kyoung Hwa Jung, Young Gyu Chai
Software Mentions: 1
Published: over 10 years ago

10.1038/celldisc.2016.25

Integrative analysis of mutational and transcriptional profiles reveals driver mutations of metastatic breast cancers
Cited by: 64
Author(s): Ji Hyun Lee, Xing Zhao, Ina Yoon, Jin Young Lee, Nam Hoon Kwon, Yin Ying Wang, Kyung Min Lee, Min Joo Lee, Jisun Kim, Hyeong‐Gon Moon, Yong-Ho In, Hao Jin, Kyung Mii Park, Dong Young Noh, Wonshik Han, Sung Hoon Kim
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0206765

An integrated analysis of mRNA and sRNA transcriptional profiles in tomato root: Insights on tomato wilt disease
Cited by: 15
Author(s): Min Zhao, Huimin Ji, Ying Gao, Xin-Xin Cao, Hui‐Ying Mao, Shan Ouyang, Peng Liu
Software Mentions: 1
Published: over 6 years ago

10.1016/j.chom.2014.05.020

Genome-wide Functional Analysis of Plasmodium Protein Phosphatases Reveals Key Regulators of Parasite Development and Differentiation
Cited by: 101
Author(s): David S. Guttery, Benoit Poulin, Abhinay Ramaprasad, Richard J. Wall, David J. P. Ferguson, Declan Brady, Eva Maria Patzewitz, Sarah Whipple, Ursula Straschil, Megan H. Wright, Alyaa M. Abdel-Haleem, Anand Radhakrishnan, Stefan T. Arold, E.W. Tate, Anthony A. Holder, Bill Wickstead, Arnab Pain, Rita Tewari
Software Mentions: 1
Published: about 11 years ago

10.1016/j.cmet.2016.10.010

Tumor-Induced IL-6 Reprograms Host Metabolism to Suppress Anti-tumor Immunity
Cited by: 248
Author(s): Thomas R. Flint, Tobias Janowitz, Claire M. Connell, Ed Roberts, Alice E. Denton, Anthony P. Coll, Duncan I. Jodrell, Douglas T. Fearon
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0177066

Characterization of joining sites of a viral histone H4 on host insect chromosomes
Cited by: 4
Author(s): Sunil Kumar, Jin Kyo Jung, Yonggyun Kim
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0160751

Transcriptome Analysis Reveals Regulation of Gene Expression for Lipid Catabolism in Young Broilers by Butyrate Glycerides
Cited by: 30
Author(s): Fugui Yin, Hai Yu, Dion Lepp, Xuejiang Shi, Xiaojian Yang, Jielun Hu, S. Leeson, Chengbo Yang, Shaoping Nie, Yongqing Hou, Joshua Gong
Software Mentions: 1
Published: almost 9 years ago

10.5194/aab-64-53-2021

Molecular mechanisms of fat deposition: &lt;i&gt;IL-6&lt;/i&gt; is a hub gene in fat lipolysis, comparing thin-tailed with fat-tailed sheep breeds
Cited by: 3
Author(s): Sana Farhadi, Jalil Shodja Ghias, Karim Hasanpur, Seyed Abolghasem Mohammadi, Esmaeil Ebrahimie
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0161410

Elevating CLIC4 in Multiple Cell Types Reveals a TGF-β Dependent Induction of a Dominant Negative Smad7 Splice Variant
Cited by: 11
Author(s): Anjali Shukla, Yihan Yang, Sara Madanikia, Yan Ho, Mangmang Li, Vanesa C. Sanchez, Christophe Cataisson, Jing Huang, Stuart H. Yuspa
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms221910892

Salt Stress Promotes Abscisic Acid Accumulation to Affect Cell Proliferation and Expansion of Primary Roots in Rice
Cited by: 22
Author(s): Yingying Huang, Jiahao Zhou, Yuxiang Li, Ruidang Quan, Juan Wang, Rongfeng Huang, Hua Qin
Software Mentions: 1
Published: almost 4 years ago

10.1186/s11658-016-0022-0

A computationally constructed ceRNA interaction network based on a comparison of the SHEE and SHEEC cell lines
Cited by: 30
Author(s): Jiachun Sun, Jize Yan, Xianrui Yuan, Rong Yang, Tanyou Dan, Xinshuai Wang, Guangwen Kong, Shegan Gao
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41423-020-0515-7

Allogeneic Vγ9Vδ2 T-cell immunotherapy exhibits promising clinical safety and prolongs the survival of patients with late-stage lung or liver cancer
Cited by: 103
Author(s): Yan Xu, Zheng Xiang, Mohammed Alnaggar, Léonce Kouakanou, Jiawei Li, Junyi He, Jiashuang Yang, Yi Hu, Yan Chen, Lin Li, Jianlei Hao, Jingxia Li, Jibing Chen, Man Li, Qili Wu, Christian Peters, Qinghua Zhang, Jianshuang Li, Yingqing Liang, Xiaohua Wang, Baohui Han, Mingzhe Ma, Dieter Kabelitz, Kecheng Xu, Wenwei Tu, Yangzhe Wu, Zhinan Yin
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41423-018-0026-y

Low-dose decitabine enhances the effect of PD-1 blockade in colorectal cancer with microsatellite stability by re-modulating the tumor microenvironment
Cited by: 86
Author(s): Ganjun Yu, Yanfeng Wu, Wenying Wang, Jia Xu, Xiaoping Lv, Xuetao Cao, Tao Wan
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0142434

Digital Gene Expression Analysis Based on De Novo Transcriptome Assembly Reveals New Genes Associated with Floral Organ Differentiation of the Orchid Plant Cymbidium ensifolium
Cited by: 12
Author(s): Fengming Yang, Genfa Zhu
Software Mentions: 1
Published: over 9 years ago

10.1007/s13402-021-00588-y

Digoxin treatment reactivates in vivo radioactive iodide uptake and correlates with favorable clinical outcome in non‐medullary thyroid cancer
Cited by: 6
Author(s): Thomas Crezee, Marika H. Tesselaar, James Nagarajah, Willem E. Corver, J. Morreau, Catrin Pritchard, Shioko Kimura, Josephina G. Kuiper, Ilse van Engen-van Grunsven, J.W.A. Smit, Romana T. Netea‐Maier, Theo S. Plantinga
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2164-14-304

Functional transcriptomic analysis of the role of MAB-5/Hox in Q neuroblast migration in Caenorhabditis elegans
Cited by: 13
Author(s): Joel V. Tamayo, Mahekta R Gujar, Stuart J. Macdonald, Erik A. Lundquist
Software Mentions: 1
Published: about 12 years ago

10.1038/s41598-019-55902-4

Lipid and DHA-production in Aurantiochytrium sp. – Responses to nitrogen starvation and oxygen limitation revealed by analyses of production kinetics and global transcriptomes
Cited by: 45
Author(s): Tonje Marita Bjerkan Heggeset, Helga Ertesvåg, Bin Liu, Trond E. Ellingsen, Ôlav Vadstein, Inga Marie Aasen
Software Mentions: 1
Published: over 5 years ago

10.1016/j.celrep.2017.08.072

Receptor Quaternary Organization Explains G Protein-Coupled Receptor Family Structure
Cited by: 38
Author(s): James H. Felce, Sarah L. Latty, Rachel Knox, Susan R. Mattick, Yuan Lui, Steven F. Lee, David Klenerman, Simon J. Davis
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0185455

Genome-wide expression analysis of salt-stressed diploid and autotetraploid Paulownia tomentosa
Cited by: 20
Author(s): Zhao Zhong, Yongsheng Li, Haifang Liu, Xiaoqiao Zhai, Mei Deng, Yanpeng Dong, Guoqiang Fan
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0106818

Transcriptome Profiling of Spinal Muscular Atrophy Motor Neurons Derived from Mouse Embryonic Stem Cells
Cited by: 36
Author(s): Miho Matsushima, Ashlee W. Harris, Brewster F. Kingham, Casey J. Lumpkin, Lynn M. Opdenaker, Suzanne M. McCahan, Wenlan Wang, Matthew E.R. Butchbach
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41598-019-56171-x

Terminal neuron localization to the upper cortical plate is controlled by the transcription factor NEUROD2
Cited by: 14
Author(s): Gizem Guzelsoy, Cansu Akkaya, Dila Atak, Cory D. Dunn, Alkan Kabakçıoğlu, Nurhan Özlü, Gulayse Ince-Dunn
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms221910849

Transcriptome-Wide Analysis Reveals a Role for Extracellular Matrix and Integrin Receptor Genes in Otic Neurosensory Differentiation from Human iPSCs
Cited by: 9
Author(s): Lejo Johnson Chacko, Hanae Lahlou, Claudia Steinacher, Saïd Assou, Yassine Messat, József Dudás, Albert S.B. Edge, Berta Crespo, Moira Crosier, Consolato Sergi, Anneliese Schrott‐Fischer, Azel Zine
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0128951

RNA-Seq Analysis of Human Trigeminal and Dorsal Root Ganglia with a Focus on Chemoreceptors
Cited by: 146
Author(s): Caroline Flegel, Nicole Schöbel, Janine Altmüller, Christian Becker, Andrea Tannapfel, Hanns Hatt, Günter Gisselmann
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0213305

Transcriptome response of roots to salt stress in a salinity-tolerant bread wheat cultivar
Cited by: 61
Author(s): Nazanin Amirbakhtiar, Ahmad Ismaili, Mohammad Reza Ghaffari, Farhad Nazarian Firouzabadi, Zahra‐Sadat Shobbar
Software Mentions: 1
Published: over 6 years ago

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Papers Mentioning TopHat 5,017