10.3389/fphys.2018.00996

Comprehensive Transcriptome Analysis Reveals Competing Endogenous RNA Networks During Avian Leukosis Virus, Subgroup J-Induced Tumorigenesis in Chickens
Cited by: 8
Author(s): Lingling Qiu, Guobin Chang, Zhiteng Li, Yue Bi, Xiangping Liu, Guohong Chen
Software Mentions: 1
Published: about 8 years ago

10.1111/jcmm.13951

Efficient method for isolation of reticulocyte RNA from healthy individuals and hemolytic anaemia patients
Cited by: 5
Author(s): Michał Skulski, Rafał Bartoszewski, Michał Majkowski, Beata Machnicka, Kazimierz Kuliczkowski, Aleksander F. Sikorski, Dżamila M. Bogusławska
Software Mentions: 1
Published: almost 8 years ago

10.3389/fphys.2017.00322

Genome-Wide Characterization and Expression Profiling of Sugar Transporter Family in the Whitefly, Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae)
Cited by: 12
Author(s): Zezhong Yang, Jixing Xia, Huipeng Pan, Gong Chen, Wen Xie, Zhaojiang Guo, Huixin Zheng, Xin Yang, Yang Fang, Qingjun Wu, Shaoli Wang, Youjun Zhang
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2018.00310

Overexpression of OsNAC14 Improves Drought Tolerance in Rice
Cited by: 133
Author(s): Jae Sung Shim, Nuri Oh, Phil Hyun Chung, Youn Shic Kim, Yang Do Choi, Ju-Kon Kim
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2019.00637

Plants Grown in Parafilm-Wrapped Petri Dishes Are Stressed and Possess Altered Gene Expression Profile
Cited by: 12
Author(s): Le Xu, Shengjie Li, Sergey Shabala, Tao Jian, Wenying Zhang
Software Mentions: 1
Published: over 7 years ago

10.1186/s13075-018-1754-1

Aberrant expression of interleukin-23-regulated miRNAs in T cells from patients with ankylosing spondylitis
Cited by: 12
Author(s): Ning‐Sheng Lai, Hui-Chun Yu, Chien-Hsueh Tung, Kuang-Yung Huang, Huey W. Huang, Ming‐Chi Lu
Software Mentions: 1
Published: almost 8 years ago

10.1007/s00401-017-1687-9

Motor neuron intrinsic and extrinsic mechanisms contribute to the pathogenesis of FUS-associated amyotrophic lateral sclerosis
Cited by: 96
Author(s): Jelena Scekic‐Zahirovic, Hajer El Oussini, Sina Mersmann, Kevin Drenner, Marina Wagner, Ying Sun, Kira Allmeroth, Stéphane Dieterle, Jérôme Sinniger, Sylvie Dirrig‐Grosch, René Frydman, Dorothee Dormann, Christian Haass, Albert C. Ludolph, Clotilde Lagier‐Tourenne, Erik Storkebaum, Luc Dupuis
Software Mentions: 1
Published: over 9 years ago

10.1111/jcmm.14436

Cigarette smoke extract alters genome‐wide profiles of circular RNAs and mRNAs in primary human small airway epithelial cells
Cited by: 23
Author(s): Ni Zeng, Tao Wang, Mei Chen, Zhicheng Yuan, Jiangyue Qin, Yanqiu Wu, Lijuan Gao, Yongchun Shen, Lei Chen, Fuqiang Wen
Software Mentions: 1
Published: over 7 years ago

10.1007/s13238-019-0650-z

Long non-coding RNA LncKdm2b regulates cortical neuronal differentiation by cis-activating Kdm2b
Cited by: 28
Author(s): Wei Li, Wenchen Shen, Bo Zhang, Kuan Tian, Yamu Li, Lili Mu, Zhiyuan Luo, Xiaoling Zhong, Xudong Wu, Ying Liu, Yan Zhou
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2015.00957

Genome-specific differential gene expressions in resynthesized Brassica allotetraploids from pair-wise crosses of three cultivated diploids revealed by RNA-seq
Cited by: 17
Author(s): Dawei Zhang, Qi Pan, Cheng Cui, Chen Tan, Xianhong Ge, Yiming Shao, Zaiyun Li
Software Mentions: 1
Published: almost 11 years ago

10.3389/fpls.2020.00069

GhWRKY70D13 Regulates Resistance to Verticillium dahliae in Cotton Through the Ethylene and Jasmonic Acid Signaling Pathways
Cited by: 31
Author(s): Xiang-Peng Xiong, Shichao Sun, Xinyu Zhang, Yanjun Li, Feng Liu, Qian Zhu, Fei Xue
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2020.00876

Evolution of Plant Architecture in Oryza Driven by the PROG1 Locus
Cited by: 5
Author(s): Liying Huang, Hui Liu, Junjie Wu, Ruoping Zhao, Yanxia Li, Melaku Getachew, Shilai Zhang, Gui Chao Huang, Yachong Bao, Min Ning, Benjia Chen, Yurui Gong, Qingyi Hu, Jing Zhang, Yesheng Zhang
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2016.00191

Dual RNA-Sequencing of Eucalyptus nitens during Phytophthora cinnamomi Challenge Reveals Pathogen and Host Factors Influencing Compatibility
Cited by: 46
Author(s): Febe E. Meyer, Louise S. Shuey, Sitha Naidoo, Thandekile B. Mamni, David Kenneth Berger, Alexander Andrew Myburg, Noëlani van den Berg, Sanushka Naidoo
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2017.01035

The Interactions between the Long Non-coding RNA NERDL and Its Target Gene Affect Wood Formation in Populus tomentosa
Cited by: 10
Author(s): Wan Shi, Mingyang Quan, Qingzhang Du, Deqiang Zhang
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2016.01844

Identification of Flowering-Related Genes Responsible for Differences in Bolting Time between Two Radish Inbred Lines
Cited by: 18
Author(s): Won Yong Jung, Hyun Ji Park, Areum Lee, Sang Sook Lee, Youn-Sung Kim, Hye Sun Cho
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-020-6732-8

A chromosome-scale assembly of the smallest Dothideomycete genome reveals a unique genome compaction mechanism in filamentous fungi
Cited by: 6
Author(s): Bo Wang, Xiaofei Liang, Mark L. Gleason, Tom Hsiang, Rong Zhang
Software Mentions: 1
Published: over 6 years ago

10.1186/s12864-019-6244-6

Transcriptomic analysis of α-synuclein knockdown after T3 spinal cord injury in rats
Cited by: 5
Author(s): Hong Zeng, Bao‐Fu Yu, Nan Liu, Yanyan Yang, Huayi Xing, Xiao-xie Liu, Mouwang Zhou
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2017.00010

Transcriptomic Analysis Implies That GA Regulates Sex Expression via Ethylene-Dependent and Ethylene-Independent Pathways in Cucumber (Cucumis sativus L.)
Cited by: 31
Author(s): Yan Zhang, Guiye Zhao, Yushun Li, Ning Mo, Jie Zhang, Yan Liang
Software Mentions: 1
Published: over 9 years ago

10.1098/rsos.180912

Genetics of a de novo origin of undifferentiated multicellularity
Cited by: 10
Author(s): Matthew D. Herron, William C. Ratcliff, Jacob Boswell, Frank Rosenzweig
Software Mentions: 1
Published: about 8 years ago

10.1111/jcmm.14718

Transcriptome sequencing of adenomyosis eutopic endometrium: A new insight into its pathophysiology
Cited by: 29
Author(s): Xiangxian Ying, Yabing Sun, Bingxin Yang, Yeping Yang, Ying Zhang, Tiantian Yu, He‐Feng Huang, Junyu Zhang, Hong Xu
Software Mentions: 1
Published: about 7 years ago

10.1111/jcmm.14794

MicroRNA‐29b‐3p suppresses oral squamous cell carcinoma cell migration and invasion via IL32/AKT signalling pathway
Cited by: 8
Author(s): Jianya He, Yan Wen, Ni Kou, Kang Chen, Bai Cui, Xiaohong Zhang, Shuhai Hu, Tingjiao Liu, Lan Kang, Xiaojie Li
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-019-6095-1

Genomic characteristics and comparative genomics analysis of the endophytic fungus Sarocladium brachiariae
Cited by: 20
Author(s): Yang Yang, Xiaobao Liu, Jing Cai, Yipeng Chen, Boxun Li, Zhi‐Kai Guo, Huang Guixiu
Software Mentions: 1
Published: almost 7 years ago

10.3389/fpls.2019.00900

A Role for PICKLE in the Regulation of Cold and Salt Stress Tolerance in Arabidopsis
Cited by: 51
Author(s): Rong Yang, Yechun Hong, Zhizhong Ren, Kai Tang, Heng Zhang, Jian‐Kang Zhu, Chunzhao Zhao
Software Mentions: 1
Published: about 7 years ago

10.3390/proteomes4040032

A Proof of Concept to Bridge the Gap between Mass Spectrometry Imaging, Protein Identification and Relative Quantitation: MSI~LC-MS/MS-LF
Cited by: 12
Author(s): Laëtitia Théron, Delphine Centeno, Cécile Coudy‐Gandilhon, Estelle Pujos‐Guillot, Thierry Astruc, Didier Rémond, Jean‐Claude Barthélémy, Frédéric Roche, Léonard Féasson, Michel Hébraud, Daniel Béchet, Christophe Chambon
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2017.01783

Overexpression of OsRRK1 Changes Leaf Morphology and Defense to Insect in Rice
Cited by: 12
Author(s): Yinhua Ma, Yan Zhao, Xinxin Shangguan, Shaojie Shi, Yanwei Zeng, Yan Wu, Rongzhi Chen, Aiqing You, Lili Zhu, Bo Du, Guangming He
Software Mentions: 1
Published: almost 9 years ago

10.1111/jcmm.15105

Silencing of ATP2B1‐AS1 contributes to protection against myocardial infarction in mouse via blocking NFKBIA‐mediated NF‐κB signalling pathway
Cited by: 22
Author(s): Kaiyou Song, Xianzhao Zhang, Feng Li, Qing‐Rong Ji
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2020.617779

Heat-Induced Oxidation of the Nuclei and Cytosol
Cited by: 29
Author(s): Richa Babbar, Barbara Karpińska, Anil Grover, Christine H. Foyer
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2016.00939

Comparative Transcriptome Analysis Reveals Heat-Responsive Genes in Chinese Cabbage (Brassica rapa ssp. chinensis)
Cited by: 25
Author(s): Aihua Wang, Jihong Hu, Xiaoqiao Huang, Xia Li, Guolin Zhou, Zhixiang Yan
Software Mentions: 1
Published: over 10 years ago

10.1007/s00204-021-03084-2

Dynamic alteration in miRNA and mRNA expression profiles at different stages of chronic arsenic exposure-induced carcinogenesis in a human cell culture model of skin cancer
Cited by: 18
Author(s): Mayukh Banerjee, Ana Paula Ferragut Cardoso, Laila Al-Eryani, Jianmin Pan, Theodore S. Kalbfleisch, Sudhir Srivastava, N. Shesh, J. Christopher States
Software Mentions: 1
Published: over 5 years ago

10.1111/jcmm.15977

Loss of TG‐Interacting Factor 1 decreases survival in mouse models of myeloid leukaemia
Cited by: 3
Author(s): Yan Ling, Utpal P. Davé, Michael Engel, Stephen J. Brandt, Rizwan Hamid
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2016.01715

Transcriptional Responses in Root and Leaf of Prunus persica under Drought Stress Using RNA Sequencing
Cited by: 42
Author(s): Najla Ksouri, Sergio Jiménez, Christina E. Wells, Bruno Contreras‐Moreira, Yolanda Gogorcena
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2020.00929

Introgression Leads to Genomic Divergence and Responsible for Important Traits in Upland Cotton
Cited by: 15
Author(s): Shoupu He, Pengpeng Wang, Yuanming Zhang, Peng Dai, Mian Faisal Nazir, Yinhua Jia, Zhen Peng, Zhaoe Pan, Junling Sun, Liru Wang, Gaofei Sun, Xinying Du
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2016.00855

Transcriptome Profiling Revealed Stress-Induced and Disease Resistance Genes Up-Regulated in PRSV Resistant Transgenic Papaya
Cited by: 22
Author(s): Jingping Fang, Aiting Lin, Weijing Qiu, Hanyang Cai, Muhammad Umar, Chen Ru-kai, Ray Ming
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2019.01575

Distinct Metabolic Signals Underlie Clone by Environment Interplay in “Nebbiolo” Grapes Over Ripening
Cited by: 13
Author(s): Chiara Pagliarani, Paolo Boccacci, Walter Chitarra, Emanuela Cosentino, Marco Sandri, Irene Perrone, Alessia Mori, Danila Cuozzo, Luca Nerva, Marzia Rossato, Paola Zuccolotto, Mario Pezzotti, Massimo Delledonne, F. Mannini, Ivana Gribaudo, Giorgio Gambino
Software Mentions: 1
Published: almost 7 years ago

10.1111/jcmm.16271

Xanthatin synergizes with cisplatin to suppress homologous recombination through JAK2/STAT4/BARD1 axis in human NSCLC cells
Cited by: 8
Author(s): Jian Zhang, Sheng Yang, Haowen Guan, Ji Zhou, Yuan Gao
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2164-14-304

Functional transcriptomic analysis of the role of MAB-5/Hox in Q neuroblast migration in Caenorhabditis elegans
Cited by: 13
Author(s): Joel V. Tamayo, Mahekta R Gujar, Stuart J. Macdonald, Erik A. Lundquist
Software Mentions: 1
Published: over 13 years ago

10.3389/fpls.2017.01778

Transcriptome Analysis of Maize Immature Embryos Reveals the Roles of Cysteine in Improving Agrobacterium Infection Efficiency
Cited by: 7
Author(s): Yan Liu, Zhiqiang Zhang, Junjie Fu, Guoying Wang, Jianhua Wang, Yun-Jun Liu
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2164-15-226

Transcriptional profiling of mammary gland in Holstein cows with extremely different milk protein and fat percentage using RNA sequencing
Cited by: 109
Author(s): Xiaogang Cui, Yali Hou, Shaohua Yang, Yan Xie, Shengli Zhang, Yuan Zhang, Qin Zhang, Xuemei Lu, George E. Liu, Dongxiao Sun
Software Mentions: 1
Published: over 12 years ago

10.3389/fpls.2020.00449

Over-Expression of a 14-3-3 Protein From Foxtail Millet Improves Plant Tolerance to Salinity Stress in Arabidopsis thaliana
Cited by: 15
Author(s): Jiaming Liu, Chengyao Jiang, Kang Lu, Hongchang Zhang, Yu Song, Zhirong Zou, Wenbin Zheng
Software Mentions: 1
Published: over 6 years ago

10.1242/jcs.144337

Impaired OMA1 dependent OPA1 cleavage and reduced DRP1 fission activity combine to prevent mitophagy in OXPHOS dependent cells
Cited by: 85
Author(s): Thomas MacVicar, Jon D. Lane
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12864-018-5316-3

Integrated microRNA and mRNA analysis in the pathogenic filamentous fungus Trichophyton rubrum
Cited by: 23
Author(s): Lingling Wang, Xingye Xu, Jian Yang, Lihong Chen, Bo Liu, Tao Liu, Qi Jin
Software Mentions: 1
Published: almost 8 years ago

10.3389/fpls.2021.663536

Brassica napus Mediator Subunit16 Induces BnMED25- and BnWRKY33-Activated Defense Signaling to Confer Sclerotinia sclerotiorum Resistance
Cited by: 6
Author(s): Huizhen Hu, Yi‐Wei Tang, Jian Wu, Feizhi Chen, Yidan Yang, Xuancheng Pan, Dong Xiang, Xianda Jin, Sheng Liu, Xuezhu Du
Software Mentions: 1
Published: about 5 years ago

10.3389/fpls.2017.01422

Comparative Transcriptome Analyses of Gene Expression Changes Triggered by Rhizoctonia solani AG1 IA Infection in Resistant and Susceptible Rice Varieties
Cited by: 49
Author(s): Jinfeng Zhang, Lei Chen, Chunyan Fu, Lingxia Wang, Huainian Liu, Yuanzhi Cheng, Shuangcheng Li, Qi Deng, Shiquan Wang, Jun Zhu, Yueyang Liang, Ping Li, Anqi Zheng
Software Mentions: 1
Published: about 9 years ago

10.18632/aging.202550

LncRNA Sirt1-AS upregulates Sirt1 to attenuate aging related deep venous thrombosis
Cited by: 12
Author(s): Zhenkai Lou, Jinwen Zhu, Xing Li, Xingguo Li, Kaili Du, Bing Wang, Fan Zhang, Chi Zhang
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-020-07014-x

Genome-wide analysis of long non-coding RNAs in adult tissues of the melon fly, Zeugodacus cucurbitae (Coquillett)
Cited by: 16
Author(s): Weijun Li, Yujia Song, Hong-Liang Han, Hui-Qian Xu, Dong Wei, Guy Smagghe, Jinjun Wang
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2164-15-159

Polysome profiling reveals broad translatome remodeling during endoplasmic reticulum (ER) stress in the pathogenic fungus Aspergillus fumigatus
Cited by: 20
Author(s): Karthik Krishnan, Zhaowei Ren, Liliana Losada, William C. Nierman, Long Lu, David Askew
Software Mentions: 1
Published: over 12 years ago

10.1242/jcs.212308

Giantin knockout models reveal a feedback loop between Golgi function and glycosyltransferase expression
Cited by: 41
Author(s): Nicola Stevenson, Dylan J. M. Bergen, Roderick E. H. Skinner, Érika Kague, Elizabeth Martin‐Silverstone, Kate Robson Brown, Chrissy L. Hammond, David Stephens
Software Mentions: 1
Published: almost 10 years ago

10.3389/fpls.2016.00093

Identification of WOX Family Genes in Selaginella kraussiana for Studies on Stem Cells and Regeneration in Lycophytes
Cited by: 37
Author(s): Yachao Ge, Jie Liu, Minhuan Zeng, Jianfeng He, Peng Qin, Hai Huang, Lin Xu
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2020.00867

Fine Mapping to Identify the Functional Genetic Locus for Red Coloration in Pyropia yezoensis Thallus
Cited by: 6
Author(s): Xinzi Yu, Lu Wang, Kuipeng Xu, Fanna Kong, Dongmei Wang, Xiufeng Tang, Bin Sun, Yunxiang Mao
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2015.00054

Laser capture microdissection in Ectocarpus siliculosus: the pathway to cell-specific transcriptomics in brown algae
Cited by: 9
Author(s): Denis Saint-Marcoux, Bernard Billoud, Jane A. Langdale, Bénédicte Charrier
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-020-6566-4

Presence–absence polymorphisms of single-copy genes in the stony coral Acropora digitifera
Cited by: 6
Author(s): Shiho Takahashi-Kariyazono, Kazuhiko Sakai, Yohey Terai
Software Mentions: 1
Published: over 6 years ago

10.1242/jcs.246306

A heterodimeric SNX4:SNX7 SNX-BAR autophagy complex coordinates ATG9A trafficking for efficient autophagosome assembly
Cited by: 17
Author(s): Zuriñe Antón, Virginie M S Betin, Boris Simonetti, Colin J. Traer, Naomi Attar, Peter J. Cullen, Jon D. Lane
Software Mentions: 1
Published: almost 7 years ago

10.1177/0271678X18769180

Inflammatory pathways are central to posterior cerebrovascular artery remodelling prior to the onset of congenital hypertension
Cited by: 9
Author(s): Dawid Walas, Karol Nowicki-Osuch, Dominic Alibhai, Eva von Linstow Roloff, Jane A. Coghill, Christy Waterfall, Julian F. R. Paton
Software Mentions: 1
Published: over 8 years ago

10.5194/aab-64-53-2021

Molecular mechanisms of fat deposition: <i>IL-6</i> is a hub gene in fat lipolysis, comparing thin-tailed with fat-tailed sheep breeds
Cited by: 3
Author(s): Sana Farhadi, Jalil Shodja Ghias, Karim Hasanpur, Seyed Abolghasem Mohammadi, Esmaeil Ebrahimie
Software Mentions: 1
Published: over 5 years ago

10.1186/2043-9113-3-8

Characteristics of cross-hybridization and cross-alignment of expression in pseudo-xenograft samples by RNA-Seq and microarrays
Cited by: 5
Author(s): Camilo Valdes, Pearl H. Seo, Nicholas F. Tsinoremas, Jennifer Clarke
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12864-015-1931-4

Transcriptome-enabled marker discovery and mapping of plastochron-related genes in Petunia spp.
Cited by: 23
Author(s): Yufang Guo, Krystle Wiegert‐Rininger, Verónica Vallejo, Cornelius S. Barry, Ryan M. Warner
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1005921

Magnaporthe oryzae Glycine-Rich Secretion Protein, Rbf1 Critically Participates in Pathogenicity through the Focal Formation of the Biotrophic Interfacial Complex
Cited by: 30
Author(s): Takeshi Nishimura, Susumu Mochizuki, Naoko Ishii-Minami, Yukiko Fujisawa, Yoshihiro Kawahara, Yuri Yoshida, Kazunori Okada, Sugihiro Ando, Hideo Matsumura, Ryohei Terauchi, Eiichi Minami, Yuji Nishizawa
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-015-1440-5

Transcriptional profile of sweet orange in response to chitosan and salicylic acid
Cited by: 40
Author(s): Danila Souza Oliveira Coqueiro, Alessandra Alves de Souza, Marco Aurélio Takita, Carolina M. Rodrigues, Luciano Takeshi Kishi, Marcos Antônio Machado
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-017-3766-7

Evidence for transcriptome-wide RNA editing among Sus scrofa PRE-1 SINE elements
Cited by: 24
Author(s): Scott A Funkhouser, Juan P. Steibel, R. O. Bates, Nancy E. Raney, Darius Schenk, Catherine W. Ernst
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2020.617635

Functional Study of BpPP2C1 Revealed Its Role in Salt Stress in Betula platyphylla
Cited by: 11
Author(s): Baoyue Xing, Chao Gu, Tianxu Zhang, Qingzhu Zhang, Qibin Yu, Jing Jiang, Guifeng Liu
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2016.01654

The Mechanisms of Maize Resistance to Fusarium verticillioides by Comprehensive Analysis of RNA-seq Data
Cited by: 52
Author(s): Yanping Wang, Zijian Zhou, Juan Gao, Yabin Wu, Xia Zhang, Huiyong Zhang, Jianyu Wu
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12864-016-2901-1

Whole blood transcriptional profiling comparison between different milk yield of Chinese Holstein cows using RNA-seq data
Cited by: 21
Author(s): Xue Bai, Zhuqing Zheng, Bin Liu, Xiaoyang Ji, Yongsheng Bai, Wenguang Zhang
Software Mentions: 1
Published: about 10 years ago

10.3389/fpls.2016.01766

RNA-seq Transcriptome Response of Flax (Linum usitatissimum L.) to the Pathogenic Fungus Fusarium oxysporum f. sp. lini
Cited by: 56
Author(s): Leonardo Galindo‐González, Michael K. Deyholos
Software Mentions: 1
Published: almost 10 years ago

10.1093/aobpla/plz074

Gene copy number is associated with phytochemistry in Cannabis sativa
Cited by: 35
Author(s): Daniela Vergara, Ezra L. Huscher, Kyle G. Keepers, Robert M. Givens, Christian G. Cizek, Anthony R. Torres, Reggie Gaudino, Nolan C. Kane
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-14-520

Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling
Cited by: 31
Author(s): Shan Li, Dong Xia, Zhengchang Su
Software Mentions: 1
Published: about 13 years ago

10.3389/fpls.2014.00743

Genome-wide identification of non-coding RNAs interacted with microRNAs in soybean
Cited by: 44
Author(s): Chu-Yu Ye, Hao Xu, Enhui Shen, Yang Liu, Yu Wang, Yifei Shen, Jie Qiu, Qian Zhu, Longjiang Fan
Software Mentions: 1
Published: almost 12 years ago

10.1186/1471-2164-15-871

Transcriptome sequencing of rhizome tissue of Sinopodophyllum hexandrum at two temperatures
Cited by: 35
Author(s): Anita Kumari, Harprit Singh, Ashwani Jha, Mohit Kumar Swarnkar, Ravi Shankar, Sanjay Kumar
Software Mentions: 1
Published: almost 13 years ago

10.3389/fpls.2020.00861

Genome-Wide Association Study Dissects the Genetic Architecture of Maize Husk Tightness
Cited by: 14
Author(s): Siqi Jiang, Haibo Zhang, Pengzun Ni, Shuai Yu, Han Dong, Ao Zhang, Huiying Cao, Lijun Zhang, Yijun Ruan, Zhenhai Cui
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2017.01023

Identification of Putative Transmembrane Proteins Involved in Salinity Tolerance in Chenopodium quinoa by Integrating Physiological Data, RNAseq, and SNP Analyses
Cited by: 43
Author(s): Sandra M. Schmöckel, Damien J. Lightfoot, Rozaimi Mohamad Razali, Mark Tester, David E. Jarvis
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2015.01183

Transcriptome Analysis of Brassica rapa Near-Isogenic Lines Carrying Clubroot-Resistant and –Susceptible Alleles in Response to Plasmodiophora brassicae during Early Infection
Cited by: 76
Author(s): Jingjing Chen, Wenxing Pang, Bing Chen, Chunyu Zhang, Zhongyun Piao
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2016.00106

Identification of Mild Freezing Shock Response Pathways in Barley Based on Transcriptome Profiling
Cited by: 13
Author(s): Xiaolei Wang, Dezhi Wu, Qian Yang, Jianbin Zeng, Gulei Jin, Zhong‐Hua Chen, Guoping Zhang, Fei Dai
Software Mentions: 1
Published: over 10 years ago

10.3389/fpls.2017.00889

Transcriptomic Analysis in Strawberry Fruits Reveals Active Auxin Biosynthesis and Signaling in the Ripe Receptacle
Cited by: 45
Author(s): Elizabeth Estrada-Johnson, Fabiana Csukasi, Carmen Martín‐Pizarro, José G. Vallarino, Yulia Kiryakova, Amalia Vioque, Javier Brumós, Nieves Medina‐Escobar, Miguel A. Botella, José M. Alonso, Alisdair R. Fernie, José F. Sánchez-Sevilla, Sonia Osorio, Victoriano Valpuesta
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-016-3014-6

Comparative transcriptome investigation of global gene expression changes caused by miR156 overexpression in Medicago sativa
Cited by: 51
Author(s): Ruimin Gao, Ryan E Austin, Lisa Amyot, Abdelali Hannoufa
Software Mentions: 1
Published: about 10 years ago

10.1186/s12864-015-1269-y

Transcriptome sequencing and analysis of the entomopathogenic fungus Hirsutella sinensis isolated from Ophiocordyceps sinensis
Cited by: 28
Author(s): Zhi‐Qiang Liu, Shan Lin, Peter J. Baker, Lingfang Wu, Xiaorui Wang, Hui Wu, Feng Xu, Hongyan Wang, Mgavi Elombe Brathwaite, Yu‐Guo Zheng
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-015-1528-y

Genome-wide next-generation DNA and RNA sequencing reveals a mutation that perturbs splicing of the phosphatidylinositol glycan anchor biosynthesis class H gene (PIGH) and causes arthrogryposis in Belgian Blue cattle
Cited by: 14
Author(s): Arnaud Sartelet, Wanbo Li, Eric Pailhoux, Christophe Richard, Nico Tamma, Latifa Karim, Corinne Fasquelle, Tom Druet, Wouter Coppieters, Michel Georges, Carole Charlier
Software Mentions: 1
Published: over 11 years ago

10.3390/antiox10071107

N-Acetylcysteine Reduces the Pro-Oxidant and Inflammatory Responses during Pancreatitis and Pancreas Tumorigenesis
Cited by: 1
Author(s): Marie-Albane Minati, Maxime Libert, Hajar Dahou, Patrick Jacquemin, Mohamad Assi
Software Mentions: 1
Published: about 5 years ago

10.1128/AAC.02793-14

Bacterial Drug Tolerance under Clinical Conditions Is Governed by Anaerobic Adaptation but not Anaerobic Respiration
Cited by: 29
Author(s): Claudia Hemsley, Jamie X. Luo, Clio A. Andreae, Catherine Butler, Orkun S. Soyer, Richard W. Titball
Software Mentions: 1
Published: about 12 years ago

10.3389/fpls.2020.01025

Response of Brassica napus to Plasmodiophora brassicae Involves Salicylic Acid-Mediated Immunity: An RNA-Seq-Based Study
Cited by: 36
Author(s): Leonardo Galindo‐González, Victor P. Manolii, Sheau‐Fang Hwang, Stephen E. Strelkov
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2016.00975

Nitric Oxide Mediated Transcriptome Profiling Reveals Activation of Multiple Regulatory Pathways in Arabidopsis thaliana
Cited by: 84
Author(s): Adil Hussain, Bong-Gyu Mun, Qari Muhammad Imran, Sang Uk Lee, Teferi Alem, Muhammad Shahid, Kyung Min Kim, Byung‐Wook Yun
Software Mentions: 1
Published: over 10 years ago

10.3390/ani9050269

Histological and Comparative Transcriptome Analyses Provide Insights into Small Intestine Health in Diarrheal Piglets after Infection with Clostridium Perfringens Type C
Cited by: 8
Author(s): Zunqiang Yan, Lijuan Cai, Xiaoyu Huang, Weibo Sun, Shouhu Li, Pengfei Wang, Qiaoli Yang, Tiantuan Jiang, Shuangbao Gun
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-15-815

Transcriptome profiling in imipenem-selected Acinetobacter baumannii
Cited by: 30
Author(s): Kai‐Chih Chang, Han-Yueh Kuo, Chuan Yi Tang, Cheng-Wei Chang, Chia-Wei Lu, Chih‐Chin Liu, Huei-Ru Lin, Kuan-Hsueh Chen, Ming-Li Liou
Software Mentions: 1
Published: about 12 years ago

10.3389/fpls.2021.663118

Genome-Wide Identification of Wheat WRKY Gene Family Reveals That TaWRKY75-A Is Referred to Drought and Salt Resistances
Cited by: 47
Author(s): Hong Ye, Liang Qiao, Haoyu Guo, Liping Guo, Fei Ren, Jianfang Bai, Yukun Wang
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2017.02199

Dissection of Insertion–Deletion Variants within Differentially Expressed Genes Involved in Wood Formation in Populus
Cited by: 16
Author(s): Chenrui Gong, Qingzhang Du, Jianbo Xie, Mingyang Quan, Beibei Chen, Deqiang Zhang
Software Mentions: 1
Published: over 8 years ago

10.3389/fpls.2017.00682

Time-Course Transcriptome Analysis of Compatible and Incompatible Pollen-Stigma Interactions in Brassica napus L.
Cited by: 18
Author(s): Tong Zhang, Changbin Gao, Yufeng Yao, Zhiquan Liu, Chaozhi Ma, Gaofeng Zhou, Yang Yong, Zhiqiang Duan, Bing Li, Jing Wen, Bin Yi, Jinxing Tu, Tingdong Fu
Software Mentions: 1
Published: over 9 years ago

10.1002/jcla.23020

Circulating microRNA expression profiling and bioinformatics analysis of patients with coronary artery disease by RNA sequencing
Cited by: 10
Author(s): Zhixiong Zhong, Wei Zhong, Zuo‐Feng Zhang, Qunji Zhang, Zhikang Yu, Heming Wu
Software Mentions: 1
Published: about 7 years ago

10.1186/s12864-020-07356-6

LncRNAs and their regulatory networks in breast muscle tissue of Chinese Gushi chickens during late postnatal development
Cited by: 13
Author(s): Yuanfang Li, Wenjiao Jin, Bin Zhai, Yi Chen, Guoxi Li, Yanhua Zhang, Yujie Guo, Guirong Sun, Ruili Han, Zhuanjian Li, Hong Li, Yadong Tian, Xiaojun Liu, Xiangtao Kang
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2017.01013

Identification of Genes Associated with Lemon Floral Transition and Flower Development during Floral Inductive Water Deficits: A Hypothetical Model
Cited by: 29
Author(s): Jinxue Li, Xiao-Jin Hou, Jiao Zhu, Jingjing Zhou, Huabin Huang, Yue Jian-qiang, Jia Gao, Yanxiu Du, Chengxiao Hu, Chun-Gen Hu, Jin‐Zhi Zhang
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-15-520

Global analysis of ZNF217 chromatin occupancy in the breast cancer cell genome reveals an association with ERalpha
Cited by: 29
Author(s): Seth Frietze, Henriette O’Geen, Laurie E. Littlepage, Catalina Simion, Colleen Sweeney, Peggy J. Farnham, Sheryl R. Krig
Software Mentions: 1
Published: almost 13 years ago

10.3390/jcm7120535

Systematic Analysis of Transcriptomic Profile of Chondrocytes in Osteoarthritic Knee Using Next-Generation Sequencing and Bioinformatics
Cited by: 14
Author(s): Yi Jen Chen, Wei‐An Chang, Ling Wu, Ya Ling Hsu, Chia-Hsin Chen, Po‐Lin Kuo
Software Mentions: 1
Published: almost 8 years ago

10.3390/jcm8020191

Indoxyl Sulfate Induces Apoptosis Through Oxidative Stress and Mitogen-Activated Protein Kinase Signaling Pathway Inhibition in Human Astrocytes
Cited by: 29
Author(s): Yi-Ting Lin, Ping-Hsun Wu, Yi‐Chun Tsai, Ya‐Ling Hsu, Han Ying Wang, Mei‐Chuan Kuo, Po‐Lin Kuo, Shang‐Jyh Hwang
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-015-1623-0

Characterization of a novel chicken muscle disorder through differential gene expression and pathway analysis using RNA-sequencing
Cited by: 198
Author(s): Marie Mutryn, Erin M. Brannick, Weixuan Fu, William R. Lee, Behnam Abasht
Software Mentions: 1
Published: over 11 years ago

10.3389/fpls.2017.01261

The Transcriptional Responses and Metabolic Consequences of Acclimation to Elevated Light Exposure in Grapevine Berries
Cited by: 25
Author(s): Kari du Plessis, Philip R. Young, Hans A. Eyéghè-Bickong, Melané A. Vivier
Software Mentions: 1
Published: about 9 years ago

10.3390/ani10010102

Transcriptomic Analysis of Testicular Gene Expression in Normal and Cryptorchid Horses
Cited by: 4
Author(s): Haoyuan Han, Hong Dai, Qiuming Chen, Yuan Gao, Jun Li, Wantao Li, Ruihua Dang, Chuzhao Lei
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-13-473

Whole transcriptome analyses of six thoroughbred horses before and after exercise using RNA-Seq
Cited by: 73
Author(s): Kyung-Do Park, Jongsun Park, Junsu Ko, Byung Chul Kim, Heui‐Soo Kim, Kung Ahn, Kyoung-Tag Do, Hansol Choi, Hak-Min Kim, Sanghoon Song, Sung-Hoon Lee, Sungwoong Jho, Hong Sik Kong, Young Mok Yang, Byung-Hak Jhun, Chulhong Kim, Tae-Hyung Kim, Seungwoo Hwang, Jong Bhak, Hak-Kyo Lee, Byung-Wook Cho
Software Mentions: 1
Published: about 14 years ago

10.3389/fpls.2021.628521

Improving Nitrogen Use Efficiency Through Overexpression of Alanine Aminotransferase in Rice, Wheat, and Barley
Cited by: 23
Author(s): Jingwen Tiong, Niharika Sharma, Ramya Sampath, Nenah Mackenzie, Sayuri Watanabe, Claire Metot, Zhongjin Lu, Wayne S. Skinner, Yingzhi Lu, Jean C. Kridl, Ute Baumann, Sigrid Heuer, Brent N. Kaiser, Mamoru Okamoto
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2018.00068

MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis
Cited by: 95
Author(s): Jer-Sheng Lin, Chia‐Chia Kuo, I-Chu Yang, Wei‐An Tsai, Yu-Hsing Shen, Chih‐Wei Lin, Yi-Chen Liang, Yuchi Li, Yun‐Wei Kuo, Yu‐Chi King, Hsi‐Mei Lai, Shih‐Tong Jeng
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-13-464

A draft of the genome and four transcriptomes of a medicinal and pesticidal angiosperm Azadirachta indica
Cited by: 82
Author(s): Neeraja M. Krishnan, Swetansu Pattnaik, Promil Jain, Prakhar Gaur, Rakshit Choudhary, Srividya Vaidyanathan, S. A. Deepak, Arun K Hariharan, P B Krishna, Jayalakshmi Nair, Linu Varghese, Naveen K Valivarthi, Kunal Dhas, Krishna Ramaswamy, Binay Panda
Software Mentions: 1
Published: about 14 years ago

10.3389/fpls.2019.00689

Expanding Alternative Splicing Identification by Integrating Multiple Sources of Transcription Data in Tomato
Cited by: 18
Author(s): Sarah Louise Clark, Feng Yu, Lianfeng Gu, Xiang Jia Min
Software Mentions: 1
Published: over 7 years ago

10.1186/s12864-015-1430-7

The Alternaria genomes database: a comprehensive resource for a fungal genus comprised of saprophytes, plant pathogens, and allergenic species
Cited by: 88
Author(s): Ha X. Dang, Barry M. Pryor, Tobin L. Peever, Christopher B. Lawrence
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2164-13-529

Analysis of a native whitefly transcriptome and its sequence divergence with two invasive whitefly species
Cited by: 53
Author(s): Xiaowei Wang, Qiongyi Zhao, Jing Luan, Yujun Wang, Gen-Hong Yan, Shu‐Sheng Liu
Software Mentions: 1
Published: almost 15 years ago