Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Theano
https://packages.ecosyste.ms/registries/pypi.org/packages/Theano
Optimizing compiler for evaluating mathematical expressions on CPUs and GPUs.
45 versions
Latest release: over 4 years ago
17 dependent packages
483,808 downloads last month
Papers Mentioning Theano 248
10.1002/mpr.1602
Automatic mining of symptom severity from psychiatric evaluation notesCited by: 23
Author(s): George Karystianis, Alejo J. Nevado, Chi Hun Kim, Azad Dehghan, John Keane, Goran Nenadić
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-020-72593-4
Collective dynamics of repeated inference in variational autoencoder rapidly find cluster structureCited by: 0
Author(s): Yoshihiro Nagano, Ryo Karakida, Masato Okada
Software Mentions: 1
Published: about 4 years ago
10.1038/s41598-021-96812-8
Evolutionary design of molecules based on deep learning and a genetic algorithmCited by: 12
Author(s): Youngchun Kwon, Seokho Kang, Yang‐Kyu Choi, Inkoo Kim
Software Mentions: 1
Published: about 3 years ago
10.1186/s12859-017-1842-2
Protein remote homology detection based on bidirectional long short-term memoryCited by: 57
Author(s): Shumin Li, Junjie Chen, Bin Liu
Software Mentions: 1
Published: about 7 years ago
10.15252/msb.20156651
Deep learning for computational biologyCited by: 1,023
Author(s): Christof Angermueller, Tanel Pärnamaa, Leopold Parts
Software Mentions: 1
Published: over 8 years ago
10.1186/s12859-018-2386-9
Deep learning architectures for prediction of nucleosome positioning from sequences dataCited by: 23
Author(s): Mattia Antonino Di Gangi, Giosué Lo Bosco, Riccardo Rizzo
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0228059
Towards a fully automated surveillance of well-being status in laboratory mice using deep learning: Starting with facial expression analysisCited by: 33
Author(s): Niek Andresen, Manuel Wöllhaf, Katharina Hohlbaum, Lars Lewejohann, Olaf Hellwich, Christa Thöne-Reineke, Vitaly Belik
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0209958
Using deep maxout neural networks to improve the accuracy of function prediction from protein interaction networksCited by: 9
Author(s): Chengsong Wan, Domenico Cozzetto, Rui Fa, David T. Jones
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0184059
Automated diagnosis of myositis from muscle ultrasound: Exploring the use of machine learning and deep learning methodsCited by: 84
Author(s): Philippe Burlina, Seth Billings, Neil Joshi, Jemima Albayda
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0187243
Nucleotide patterns aiding in prediction of eukaryotic promotersCited by: 18
Author(s): Martin Tříska, Victor Solovyev, Ancha Baranova, Alexander Kel, Tatiana V. Tatarinova
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0242858
Identifying transcriptomic correlates of histology using deep learningCited by: 10
Author(s): Liviu Badea, Emil Stănescu
Software Mentions: 1
Published: almost 4 years ago
10.3390/s18010178
Accurate Natural Trail Detection Using a Combination of a Deep Neural Network and Dynamic ProgrammingCited by: 13
Author(s): Shyam Prasad Adhikari, Changju Yang, Krzysztof Ślot, Hyongsuk Kim
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0208808
Learning from data to predict future symptoms of oncology patientsCited by: 14
Author(s): Nikolaos Papachristou, Daniel Puschmann, Payam Barnaghi, Bruce A. Cooper, Xiao Hu, Roma Maguire, Kathi Apostolidis, Yvette P. Conley, Marilyn J. Hammer, Stylianos Katsaragakis, Kord M. Kober, Jon D. Levine, Lisa McCann, Elisabeth Patiraki, Eileen Furlong, Patricia Fox, Steven M. Paul, Emma Ream, Fay Wright, Christine Miaskowski
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12859-017-1702-0
3D deep convolutional neural networks for amino acid environment similarity analysisCited by: 110
Author(s): Wen Torng, Russ B. Altman
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0215502
Machine learning to predict microbial community functions: An analysis of dissolved organic carbon from litter decompositionCited by: 64
Author(s): Jaron Thompson, Renee Johansen, John Dunbar, Brian Munsky
Software Mentions: 1
Published: over 5 years ago
10.3390/s18072110
LiReD: A Light-Weight Real-Time Fault Detection System for Edge Computing Using LSTM Recurrent Neural NetworksCited by: 92
Author(s): Park Donghyun, Seulgi Kim, Yelin An, Jae‐Yoon Jung
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0191939
Forecasting short-term data center network traffic load with convolutional neural networksCited by: 67
Author(s): Alberto Mozó, Bruno Ordozgoiti, Sandra Gómez-Canaval
Software Mentions: 1
Published: almost 7 years ago
10.1038/s42003-021-01699-w
DeepACSON automated segmentation of white matter in 3D electron microscopyCited by: 26
Author(s): Ali Abdollahzadeh, Ilya Belevich, Eija Jokitalo, Alejandra Sierra, Jussi Tohka
Software Mentions: 1
Published: over 3 years ago
10.1155/2017/2917536
Automatic Image-Based Plant Disease Severity Estimation Using Deep LearningCited by: 357
Author(s): Guan Wang, Yu Sun, Jianxin Wang
Software Mentions: 1
Published: almost 8 years ago
10.3390/s18092955
A New Structural Health Monitoring Strategy Based on PZT Sensors and Convolutional Neural NetworkCited by: 89
Author(s): Mário Anderson de Oliveira, André Monteiro, Jozué Vieira Filho
Software Mentions: 1
Published: about 6 years ago
10.1155/2017/7643065
Joint Extraction of Entities and Relations Using Reinforcement Learning and Deep LearningCited by: 16
Author(s): Yuntian Feng, Hongjun Zhang, Wenning Hao, Gang Chen
Software Mentions: 1
Published: almost 8 years ago
10.1155/2021/6678355
Predicting Slurry Pressure Balance with a Long Short-Term Memory Recurrent Neural Network in Difficult Ground ConditionCited by: 3
Author(s): Qiang Wang, Xu Xie, Hongjie Yu, Michael A. Mooney
Software Mentions: 1
Published: over 3 years ago
10.1155/2016/3289801
Deep Neural Networks Based Recognition of Plant Diseases by Leaf Image ClassificationCited by: 967
Author(s): Srdjan Sladojević, Marko Arsenović, Andraš Anderla, Dubravko Ćulibrk, Darko Stefanović
Software Mentions: 1
Published: almost 9 years ago
10.1155/2018/6747098
Handwritten Bangla Character Recognition Using the State-of-the-Art Deep Convolutional Neural NetworksCited by: 55
Author(s): Zahangir Alom, Paheding Sidike, Mahmudul Hasan, Tarek M. Taha, Vijayan K. Asari
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0220294
A modeling and machine learning approach to ECG feature engineering for the detection of ischemia using pseudo-ECGCited by: 22
Author(s): Carlos Ledezma, Xin Zhou, Blanca Rodríguez, P.J. Tan, Vanessa Díaz‐Zuccarini
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0210463
Sensitivity and specificity of computer vision classification of eyelid photographs for programmatic trachoma assessmentCited by: 9
Author(s): Matthew C. Kim, Kazunori Okada, Alexander M. Ryner, Abdou Amza, Zerihun Tadesse, Sun Y. Cotter, Bruce D. Gaynor, Jeremy D. Keenan, Thomas M. Lietman, Travis C. Porco
Software Mentions: 1
Published: over 5 years ago
10.1155/2018/2391925
Automated Whole-Body Bone Lesion Detection for Multiple Myeloma on <sup>68</sup>Ga-Pentixafor PET/CT Imaging Using Deep Learning MethodsCited by: 89
Author(s): Lina Xu, Giles Tetteh, Jana Lipková, Yu Zhao, Hongwei Li, Patrick Ferdinand Christ, Marie Piraud, Andreas K. Buck, Kuangyu Shi, Bjoern Menze
Software Mentions: 1
Published: almost 7 years ago
10.1016/j.cub.2017.03.074
“What Not” Detectors Help the Brain See in DepthCited by: 58
Author(s): Nuno Reis Goncalves, Andrew E. Welchman
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0084843
Deep Learning of Orthographic Representations in BaboonsCited by: 18
Author(s): Thomas Hannagan, Johannes C. Ziegler, Stéphane Dufau, Joël Fagot, Jonathan Grainger
Software Mentions: 1
Published: almost 11 years ago
10.1093/database/baw048
Exploiting syntactic and semantics information for chemical–disease relation extractionCited by: 57
Author(s): Huiwei Zhou, Hongda Deng, Long Chen, Yunlong Yang, Chen Jia, Degen Huang
Software Mentions: 1
Published: almost 9 years ago
10.3390/diagnostics11081373
Deep Learning Application for Analyzing of Constituents and Their Correlations in the Interpretations of Medical ImagesCited by: 6
Author(s): Tudor Florin Ursuleanu, Andreea Roxana Luca, Liliana Gheorghe, Roxana Grigorovici, Stefan Iancu, Maria Hlusneac, Cristina Preda, Alexandru Grigorovici
Software Mentions: 1
Published: over 3 years ago
10.3390/s18092929
Ship Classification in High-Resolution SAR Images Using Deep Learning of Small DatasetsCited by: 67
Author(s): Yuan‐Yuan Wang, Chao Wang, Hong Zhang
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0205636
Deep language space neural network for classifying mild cognitive impairment and Alzheimer-type dementiaCited by: 28
Author(s): Sylvester Olubolu Orimaye, Jojo Sze-Meng Wong, Chin Chin Wong
Software Mentions: 1
Published: about 6 years ago
10.3390/e22070714
Optimal Encoding in Stochastic Latent-Variable ModelsCited by: 5
Author(s): Michael E Rule, Martino Sorbaro, Matthias H. Hennig
Software Mentions: 1
Published: over 4 years ago
10.3390/e22111296
Convolutional Neural Network Approach for Multispectral Facial Presentation Attack Detection in Automated Border Control SystemsCited by: 5
Author(s): Manuel Sánchez‐Sánchez, Cristina Conde, Beatriz Gómez-Ayllón, David Ortega-delCampo, Aristeidis Tsitiridis, Daniel Palacios-Alonso, Enrique Cabello
Software Mentions: 1
Published: almost 4 years ago
10.3390/e22070792
MADFU: An Improved Malicious Application Detection Method Based on Features UncertaintyCited by: 2
Author(s): Hongli Yuan, Yongchuan Tang
Software Mentions: 1
Published: over 4 years ago
10.2196/15708
Machine Learning and Natural Language Processing in Mental Health: Systematic ReviewCited by: 115
Author(s): Aziliz Le Glaz, Yannis Haralambous, Deok-Hee Kim-Dufor, Philippe Lenca, Romain Billot, Taylor C. Ryan, Jonathan Marsh, Jordan DeVylder, Michel Walter, Sofian Berrouiguet, Christophe Lemey
Software Mentions: 1
Published: over 3 years ago
10.1186/s41747-019-0085-6
3D convolutional neural networks applied to CT angiography in the detection of acute ischemic strokeCited by: 44
Author(s): Olli Öman, Teemu Mäkelä, Eero Salli, Sauli Savolainen, Marko Kangasniemi
Software Mentions: 1
Published: over 5 years ago
10.1145/3027063.3053103
ShapeShopCited by: 20
Author(s): Fred Hohman, Nathan O. Hodas, Duen Horng Chau
Software Mentions: 1
Published: over 7 years ago
10.3389/fnagi.2018.00212
Predicting Aging of Brain Metabolic Topography Using Variational AutoencoderCited by: 23
Author(s): Hongyoon Choi, Hyejin Kang, Dong Hoon Lee
Software Mentions: 1
Published: over 6 years ago
10.3389/frai.2020.578613
Prognostics and Health Management of Industrial Assets: Current Progress and Road AheadCited by: 29
Author(s): Luca Biggio, Iason Kastanis
Software Mentions: 1
Published: almost 4 years ago
10.3390/s18124458
Development of Limited-Angle Iterative Reconstruction Algorithms with Context Encoder-Based Sinogram Completion for Micro-CT ApplicationsCited by: 9
Author(s): Shih Chun Jin, Chia Jui Hsieh, Jyh Cheng Chen, Shih Huan Tu, Ya Chen Chen, Tzu-Chien Hsiao, Angela Liu, Wen Hsiang Chou, Woei Chyn Chu, Chih Wei Kuo
Software Mentions: 1
Published: almost 6 years ago
10.3390/molecules23081923
Deep Neural Network Based Predictions of Protein Interactions Using Primary SequencesCited by: 80
Author(s): Hang Li, Xiujun Gong, Hua Yu, Chang Zhou
Software Mentions: 1
Published: over 6 years ago
10.3389/fchem.2019.00809
Deep Learning for Deep Chemistry: Optimizing the Prediction of Chemical PatternsCited by: 99
Author(s): Tânia F.G.G. Cova, Alberto Pais
Software Mentions: 1
Published: almost 5 years ago
10.3390/bios11090336
Recent Advances in Electrochemical Biosensors: Applications, Challenges, and Future ScopeCited by: 129
Author(s): Anoop Singh, Asha Sharma, Aamir Ahmed, Ashok K. Sundramoorthy, Hidemitsu Furukawa, Sandeep Arya, Ajit Khosla
Software Mentions: 1
Published: about 3 years ago
10.1371/journal.pone.0205355
Multi-resolution speech analysis for automatic speech recognition using deep neural networks: Experiments on TIMITCited by: 25
Author(s): Doroteo T. Toledano, María Pilar Fernández-Gallego, Alicia Lozano-Díez
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0188129
On the prediction of DNA-binding proteins only from primary sequences: A deep learning approachCited by: 43
Author(s): Yuan Qu, Hua Yu, Xiujun Gong, Jiahui Xu, Hong-Shun Lee
Software Mentions: 1
Published: almost 7 years ago