Ecosyste.ms: Papers

10.3389/fmicb.2020.00666

Contribution of the Broiler Breeders’ Fecal Microbiota to the Establishment of the Eggshell Microbiota
Cited by: 27
Author(s): Sandrine Trudeau, Alexandre Thibodeau, Jean-Charles Côté, Marie-Lou Gaucher, Philippe Fravalo
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.01260

Seasonal Variation and Sexual Dimorphism of the Microbiota in Wild Blue Sheep (Pseudois nayaur)
Cited by: 12
Author(s): Zhaoling Zhu, Yewen Sun, Feng Zhu, Zhensheng Liu, Ruliang Pan, Liwei Teng, Songtao Guo
Software Mentions: 1
Published: over 4 years ago

10.3389/fnins.2015.00290

Retinal prostheses: progress toward the next generation implants
Cited by: 64
Author(s): Diego Ghezzi
Software Mentions: 1
Published: over 9 years ago

10.3389/fphar.2020.00633

A Novel Approach Based on Metabolomics Coupled With Intestinal Flora Analysis and Network Pharmacology to Explain the Mechanisms of Action of Bekhogainsam Decoction in the Improvement of Symptoms of Streptozotocin-Induced Diabetic Nephropathy in Mice
Cited by: 26
Author(s): Xianglong Meng, Junnan Ma, An Na Kang, Seok Yong Kang, Hyo Won Jung, Yong‐Ki Park
Software Mentions: 1
Published: over 4 years ago

10.3389/fphar.2021.632569

Ginger Alleviates DSS-Induced Ulcerative Colitis Severity by Improving the Diversity and Function of Gut Microbiota
Cited by: 32
Author(s): Shan-Shan Guo, Wenye Geng, Shan Chen, Li Wang, Xuli Rong, Shuocun Wang, Tingfang Wang, Liangshan Xiong, Junkai Huang, Xiaobin Pang, Yiming Lu
Software Mentions: 1
Published: over 3 years ago

10.1186/gb-2012-13-7-r60

A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples
Cited by: 118
Author(s): Serena Dollive, Gregory L. Peterfreund, Scott Sherrill-Mix, Kyle Bittinger, Rohini Sinha, Christian Hoffmann, Christopher S. Nabel, David R.C. Hill, David Artis, Michael A. Bachman, Rebecca Custers-Allen, Stephanie Grunberg, Gary D. Wu, James D. Lewis, Frederic D. Bushman
Software Mentions: 1
Published: almost 13 years ago

10.1080/19490976.2021.1897208

Running after ghosts: are dead bacteria the dark matter of the human gut microbiota?
Cited by: 17
Author(s): Sara Bellali, Jean-Christophe Lagier, Matthieu Million, Hussein Anani, Gabriel Haddad, Rania Francis, Edmond Kuete Yimagou, Saber Khelaifia, Anthony Levasseur, Didier Raoult, Jacques Bou Khalil
Software Mentions: 1
Published: almost 4 years ago

10.3390/insects12050416

Coexistence of Three Dominant Bacterial Symbionts in a Social Aphid and Implications for Ecological Adaptation
Cited by: 5
Author(s): Qian Liu, Hui Zhang, Lingda Zeng, Yuhua Yu, Xiaolan Lin, Xiaolei Huang
Software Mentions: 1
Published: over 3 years ago

10.3164/jcbn.19-87

Ketone production by ketogenic diet and by intermittent fasting has different effects on the gut microbiota and disease progression in an Alzheimer’s disease rat model
Cited by: 42
Author(s): Sunmin Park, Ting Zhang, Xuangao Wu, Jing Qiu
Software Mentions: 1
Published: almost 5 years ago

10.3390/jcm9030700

Interstitial Lung Disease Associated with Lung Cancer: A Case–Control Study
Cited by: 14
Author(s): Q. Gibiot, I. Monnet, Pierre Lévy, Anne-Laure Brun, Martine Antoine, C. Chouaïd, Jacques Cadranel, Jean‐Marc Naccache
Software Mentions: 1
Published: over 4 years ago

10.3390/polym13030372

Non-Furanic Humins-Based Non-Isocyanate Polyurethane (NIPU) Thermoset Wood Adhesives
Cited by: 12
Author(s): Xinyi Chen, A. Pizzi, Hisham Essawy, Emmanuel Fredon, Christine Gérardin, Nathanaël Guigo, Nicolas Sbirrazzuoli
Software Mentions: 1
Published: almost 4 years ago

10.1038/srep32191

Gut microbiome and dietary patterns in different Saudi populations and monkeys
Cited by: 49
Author(s): E. Angelakis, Muhammad Yasir, Dipankar Bachar, Esam I. Azhar, Jean-Christophe Lagier, Fehmida Bibi, Asif A. Jiman-Fatani, Maha Alawi, Marwan A. Bakarman, Caroline Robert, Didier Raoult
Software Mentions: 1
Published: about 8 years ago

10.1038/srep38248

Complete genome sequence and transcriptomic analysis of a novel marine strain Bacillus weihaiensis reveals the mechanism of brown algae degradation
Cited by: 23
Author(s): Yueming Zhu, Peng Chen, Youmei Bao, Yan Men, Yan Zeng, Jiangang Yang, Jibin Sun, Yi Sun
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep41730

Population expansion and individual age affect endoparasite richness and diversity in a recolonising large carnivore population
Cited by: 33
Author(s): Ines Lesniak, Ilja Heckmann, Emanuel Heitlinger, Claudia A. Szentiks, Carsten Nowak, Verena Harms, Anne Jarausch, Ilka Reinhardt, Gesa Kluth, Heribert Hofer, Oliver Krone
Software Mentions: 1
Published: almost 8 years ago

10.1038/s41598-018-28733-y

The composition of the perinatal intestinal microbiota in cattle
Cited by: 121
Author(s): Mohammad Alipour, Jonna Jalanka, Tiina Pessa‐Morikawa, Tuomo Kokkonen, Reetta Satokari, Ulla Hynönen, Antti Iivanainen, Mikael Niku
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-018-33993-9

16S rRNA amplicon sequencing reveals a polymicrobial nature of complicated claw horn disruption lesions and interdigital phlegmon in dairy cattle
Cited by: 23
Author(s): Veysel Bay, Bethany E Griffiths, S. Carter, Nicholas J. Evans, Luca Lenzi, R.C. Bicalho, Georgios Oikonomou
Software Mentions: 1
Published: about 6 years ago

10.1038/s41598-019-40471-3

Common skin bacteria protect their host from oxidative stress through secreted antioxidant RoxP
Cited by: 40
Author(s): Tilde Andersson, Gizem Ertürk Bergdahl, Karim Saleh, Helga Magnúsdóttir, Kristian Stødkilde, Christian Brix Folsted Andersen, Katarina Lundqvist, A. S. Jensen, Holger Brüggemann, Rolf Lood
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-54702-0

Oral Microbiota Development in Early Childhood
Cited by: 30
Author(s): Beatrice Kennedy, Sari Peura, Ulf Hammar, Silvia Vicenzi, Anna M. Hedman, Catarina Almqvist, Ellika Andolf, Göran Pershagen, Johan Dicksved, Stefan Bertilsson, Tove Fall
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-020-63196-0

Microbial Dysbiosis During Simian Immunodeficiency Virus Infection is Partially Reverted with Combination Anti-retroviral Therapy
Cited by: 10
Author(s): Faith C. Blum, Britney L. Hardy, Kimberly A. Bishop‐Lilly, K. G. Frey, Theron Hamilton, James B. Whitney, Mark G. Lewis, D. Scott Merrell, Joseph J. Mattapallil
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-65792-6

Impact of pemetrexed chemotherapy on the gut microbiota and intestinal inflammation of patient-lung-derived tumor xenograft (PDX) mouse models
Cited by: 10
Author(s): Cindy Pensec, Florence Gillaizeau, Dominique Guénot, Anne Bessard, Thomas Carton, Sébastien Leuillet, Mario Campone, Michel Neunlist, Hervé M. Blottière, Françoise Le Vacon
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-77245-1

The impacts of acid suppression on duodenal microbiota during the early phase of severe acute pancreatitis
Cited by: 6
Author(s): Xiao Ma, Libin Huang, Zhiyin Huang, Jinsun Jiang, Chong Zhao, Huan Tong, Zhe Feng, Jinhang Gao, Rui Li, Mingguang Zhang, Ming Zhou, Qing Tan, Ling Liu, Chengwei Tang
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-021-94481-1

The change of gut microbiota in MDD patients under SSRIs treatment
Cited by: 25
Author(s): Yang Shen, Xiao Yang, Gaofei Li, Jiayu Gao, Ying Liang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-99342-5

Study of microbiocenosis of canine dental biofilms
Cited by: 5
Author(s): Jana Kačírová, Aladár Maďari, Rastislav Mucha, Lívia Kolesár Fecskeová, Izabela Mujakić, Michal Koblížek, Radomı́ra Nemcová, Marián Maďar
Software Mentions: 1
Published: about 3 years ago

10.3390/s17091979

Automatic Registration of TLS-TLS and TLS-MLS Point Clouds Using a Genetic Algorithm
Cited by: 15
Author(s): Yan Li, Junxiang Tan, Liu Hua, Hong Xie, Changjun Chen
Software Mentions: 1
Published: about 7 years ago

10.1186/2193-1801-3-138

Host-specific assemblages typify gut microbial communities of related insect species
Cited by: 45
Author(s): Zakee L. Sabree, Nancy A. Moran
Software Mentions: 1
Published: over 10 years ago

10.1128/mBio.02129-16

Viruses in the Oceanic Basement
Cited by: 45
Author(s): Olivia D. Nigro, Sean P. Jungbluth, Hsiang Ju Lin, Chia Chien Hsieh, Jaclyn A. Miranda, Christopher R. Schvarcz, Michael S. Rappé, Grieg F. Steward
Software Mentions: 1
Published: over 7 years ago

10.1128/mSphere.00028-16

Artificial Seawater Media Facilitate Cultivating Members of the Microbial Majority from the Gulf of Mexico
Cited by: 58
Author(s): Michael W. Henson, David M. Pitre, Jessica Lee Weckhorst, V. Celeste Lanclos, Austen T. Webber, J. Cameron Thrash
Software Mentions: 1
Published: over 8 years ago

10.1128/mSphere.00006-17

Next-Generation Sequencing Combined with Specific PCR Assays To Determine the Bacterial 16S rRNA Gene Profiles of Middle Ear Fluid Collected from Children with Acute Otitis Media
Cited by: 34
Author(s): Saara Sillanpää, Lenka Kramná, Sami Oikarinen, Markku Sipilä, Markus Rautiainen, Janne Aittoniemi, Jussi Laranne, Heikki Hyöty, Ondřej Cinek
Software Mentions: 1
Published: over 7 years ago

10.1128/mSystems.00773-21

Characterizing the Uncultivated Microbial Minority: towards Understanding the Roles of the Rare Biosphere in Microbial Communities
Cited by: 7
Author(s): Jimmy H. Saw
Software Mentions: 1
Published: about 3 years ago

10.1038/ismej.2014.56

Efficient CO2 fixation by surface Prochlorococcus in the Atlantic Ocean
Cited by: 35
Author(s): Manuela Hartmann, Paola R. Gómez-Pereira, Carolina Grob, Martin Ostrowski, David J. Scanlan, Mikhail V. Zubkov
Software Mentions: 1
Published: over 10 years ago

10.1038/s41396-019-0490-0

Baltic Sea methanogens compete with acetogens for electrons from metallic iron
Cited by: 32
Author(s): Paola Andrea Palacios, Oona Snoeyenbos-West, Carolin R. Löscher, Bo Thamdrup, Amelia-Elena Rotaru
Software Mentions: 1
Published: about 5 years ago

10.1097/PGP.0000000000000735

The Silva Pattern-based Classification for HPV-associated Invasive Endocervical Adenocarcinoma and the Distinction Between In Situ and Invasive Adenocarcinoma: Relevant Issues and Recommendations From the International Society of Gynecological Pathologists
Cited by: 16
Author(s): Isabel Alvarado‐Cabrero, Carlos Parra‐Herran, Simona Stolnicu, Andres A. Roma, Esther Oliva, Anaís Malpica
Software Mentions: 1
Published: almost 4 years ago

10.1097/PGP.0000000000000757

Online Training and Self-assessment in the Histopathologic Classification of Endocervical Adenocarcinoma and Diagnosis of Pattern of Invasion: Evaluation of Participant Performance
Cited by: 2
Author(s): Kay J. Park, Isabel Alvarado Cabrero, Oluwole Fadare, Lynn Hoang, Takako Kiyokawa, Esther Oliva, Carlos Parra‐Herran, Joseph T. Rabban, Andres A. Roma, Naveena Singh, Robert A. Soslow, Simona Stolnicu, Jutta Huvila, Samuel Leung, C. Blake Gilks
Software Mentions: 1
Published: almost 4 years ago

10.1097/PGP.0000000000000741

Grading of Endocervical Adenocarcinomas: Review of the Literature and Recommendations From the International Society of Gynecological Pathologists
Cited by: 9
Author(s): Karen L. Talia, Esther Oliva, Joseph T. Rabban, Naveena Singh, Simona Stolnicu, W. Glenn McCluggage
Software Mentions: 1
Published: almost 4 years ago

10.1155/2020/8884070

Metabarcoding Analysis of Bacterial Communities Associated with Media Grow Bed Zones in an Aquaponic System
Cited by: 6
Author(s): Nasser Kasozi, Horst Kaiser, Brendan Wilhelmi
Software Mentions: 1
Published: about 4 years ago

10.3390/ijerph16234857

Detectable Levels of Bacterial Pathogens in the Rivers of the Lake Chaohu Basin, China
Cited by: 1
Author(s): Kwang‐Tsao Shao, Xin Yao, Guobo Xie, Yuanyuan Wu, Yang Hu, Xiangming Tang, Guang Gao
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.07966

Abundant toxin-related genes in the genomes of beneficial symbionts from deep-sea hydrothermal vent mussels
Cited by: 46
Author(s): Lizbeth Sayavedra, Manuel Kleiner, Ruby Ponnudurai, Silke Wetzel, Éric Pelletier, Valérie Barbe, Nori Satoh, Eiichi Shoguchi, Dennis Fink, Corinna Breusing, Thorsten B.H. Reusch, Philip Rosenstiel, Markus B. Schilhabel, Dörte Becher, Thomas Schweder, Stephanie Markert, Nicole Dubilier, Jillian M. Petersen
Software Mentions: 1
Published: about 9 years ago

10.3390/ijms20153636

Exploring the Potential of Overexpressed OsCIPK2 Rice as a Nitrogen Utilization Efficient Crop and Analysis of Its Associated Rhizo-Compartmental Microbial Communities
Cited by: 12
Author(s): Muhammad Umar Khan, Penghui Li, Hira Amjad, Ali Qaiser Khan, Yasir Arafat, Muhammad Waqas, Zhong Li, Ali Noman, Waqar Islam, Linkun Wu, Zhixing Zhang, Wenxiong Lin
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21082900

Tetragonia tetragonioides Protected against Memory Dysfunction by Elevating Hippocampal Amyloid-β Deposition through Potentiating Insulin Signaling and Altering Gut Microbiome Composition
Cited by: 14
Author(s): Da Sol Kim, Byoung‐Seob Ko, Jin Ah Ryuk, Sunmin Park
Software Mentions: 1
Published: over 4 years ago

10.18632/oncotarget.23073

Effect of calcium salt of long-chain fatty acids and alfalfa supplementation on performance of Holstein bulls
Cited by: 15
Author(s): Yang He, Wen-jing Niu, Qinghua Qiu, Chuanqi Xia, Tao Shao, Haibo Wang, Qianwen Li, Zhantao Yu, Zhibiao Gao, MA Rahman, Huawei Su, Binghai Cao
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12967-021-02788-4

Association of exacerbation phenotype with the sputum microbiome in chronic obstructive pulmonary disease patients during the clinically stable state
Cited by: 25
Author(s): Chia Yu Yang, Shiao-Wen Li, Chia-Yin Chin, Chia-Wei Hsu, Chi-Ching Lee, Yuan-Ming Yeh, Kun Wu
Software Mentions: 1
Published: over 3 years ago

10.3390/nu12061802

In Vitro Fermentation of Sheep and Cow Milk Using Infant Fecal Bacteria
Cited by: 8
Author(s): Natalie G. Ahlborn, Wayne Young, Jane A. Mullaney, Linda M. Samuelsson
Software Mentions: 1
Published: over 4 years ago

10.3390/nu13010042

Effects of Maternal Fiber Intake on Intestinal Morphology, Bacterial Profile and Proteome of Newborns Using Pig as Model
Cited by: 10
Author(s): Ying He, Peng Xie, Yang Liu, Qing Wu, Qiang Zhou, Liang Hu, Zhengfeng Fang, Yan Lin, Shengyu Xu, Bin Feng, Jian Li, Yong Zhuo, De Wu, Lianqiang Che
Software Mentions: 1
Published: almost 4 years ago

10.3390/nu13072182

AB-Kefir Reduced Body Weight and Ameliorated Inflammation in Adipose Tissue of Obese Mice Fed a High-Fat Diet, but Not a High-Sucrose Diet
Cited by: 12
Author(s): Yung-Tsung Chen, Ai-Hua Hsu, Shiou-Yun Chiou, Yu‐Chun Lin, Jin‐Seng Lin
Software Mentions: 1
Published: over 3 years ago

10.1186/s13568-020-01156-7

A microbial ecosystem: agricultural Jiaosu achieves effective and lasting antifungal activity against Botrytis cinerea
Cited by: 5
Author(s): Yue Zhang, Youhui Gao, Zicheng Zheng, Xingyao Meng, Yafan Cai, Jianbin Liu, Yuegao Hu, Shuangdui Yan, Xiaofen Wang
Software Mentions: 1
Published: almost 4 years ago