Ecosyste.ms: Papers

10.1186/s13568-019-0826-1

Development of quantitative PCR for the detection of Alkalilimnicola ehrlichii, Thioalkalivibrio sulfidiphilus and Thioalkalibacter halophilus in gas biodesulfurization processes
Cited by: 4
Author(s): Karine Kiragosyan, H. Pieter J. van Veelen, Suyash Gupta, Agnieszka Tomaszewska-Porada, Pawel Roman, Peer H. A. Timmers
Software Mentions: 1
Published: over 5 years ago

10.1186/s13568-020-00998-5

Long-chain n-alkane biodegradation coupling to methane production in an enriched culture from production water of a high-temperature oil reservoir
Cited by: 11
Author(s): Jing Chen, Yifan Liu, Lei Zhou, Muhammad Irfan, Zhenshan Hou, Wei Li, Serge Maurice Mbadinga, Jinfeng Liu, Shi‐Zhong Yang, Xiaolin Wu, Ji‐Dong Gu, Bo‐Zhong Mu
Software Mentions: 1
Published: over 4 years ago

10.18632/aging.101439

Integrative analysis of gut microbiota composition, host colonic gene expression and intraluminal metabolites in aging C57BL/6J mice
Cited by: 44
Author(s): Benthe van der Lugt, Fenni Rusli, Carolien Lute, Andreas Lamprakis, Ethel Salazar, Mark V. Boekschoten, Guido Hooiveld, Michael Müller, Jacques Vervoort, Sander Kersten, Clara Belzer, Dieuwertje E. Kok, Wilma T. Steegenga
Software Mentions: 1
Published: over 6 years ago

10.1186/s42523-020-00035-7

The fecal microbiota of wild and captive raptors
Cited by: 26
Author(s): Bruno César Miranda Oliveira, Maureen Murray, Florina S. Tseng, Giovanni Widmer
Software Mentions: 1
Published: over 4 years ago

10.3390/ani9010028

Integrating 16S rRNA Sequencing and LC–MS-Based Metabolomics to Evaluate the Effects of Live Yeast on Rumen Function in Beef Cattle
Cited by: 37
Author(s): Ibukun M Ogunade, Hank Schweickart, Megan McCoun, Kyle Cannon, Christina J. McManus
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12898-014-0034-4

High-throughput sequencing of nematode communities from total soil DNA extractions
Cited by: 66
Author(s): Rumakanta Sapkota, Mogens Nicolaisen
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12898-016-0068-x

A metabarcoding framework for facilitated survey of endolithic phototrophs with tufA
Cited by: 53
Author(s): Thomas Sauvage, William E. Schmidt, Shoichiro Suda, Suzanne Fredericq
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2148-9-125

Cross-study analysis of genomic data defines the ciliate multigenic epiplasmin family: strategies for functional analysis in Paramecium tetraurelia
Cited by: 16
Author(s): Raghida Damaj, Sébastien Pomel, Geneviève Bricheux, Gérard Coffe, Bernard Viguès, Viviane Ravet, Philippe Bouchard
Software Mentions: 1
Published: over 15 years ago

10.1186/s12864-017-4307-0

Chromosome level assembly and secondary metabolite potential of the parasitic fungus Cordyceps militaris
Cited by: 22
Author(s): Glenna J. Kramer, Justin R. Nodwell
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-12-45

Comparative analysis of information contents relevant to recognition of introns in many species
Cited by: 32
Author(s): Hiroaki Iwata, Osamu Gotoh
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2180-10-261

Planctomycetes dominate biofilms on surfaces of the kelp Laminaria hyperborea
Cited by: 177
Author(s): Mia M. Bengtsson, Lise Øvreås
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12866-020-01740-8

Midgut microbiota diversity of potato tuber moth associated with potato tissue consumed
Cited by: 14
Author(s): Yaqiang Zheng, Guanli Xiao, Wenwu Zhou, Yulin Gao, Li ZhengYue, Guangzu Du, Bin Chen
Software Mentions: 1
Published: over 4 years ago

10.1136/bmjsem-2017-000244

An observational study of spectators’ step counts and reasons for attending a professional golf tournament in Scotland
Cited by: 7
Author(s): Andrew Murray, Kieran Turner, Daryll Archibald, C Schiphorst, Steffan Griffin, Hilary Scott, Roger Hawkes, Paul Kelly, Liz Grant, Nanette Mutrie
Software Mentions: 1
Published: over 7 years ago

10.3390/biology10020115

The Dynamics of the Bacterial Community of the Photobioreactor-Cultivated Green Microalga Haematococcus lacustris during Stress-Induced Astaxanthin Accumulation
Cited by: 9
Author(s): Konstantin Chekanov, Anna Zaytseva, Ilgar Z. Mamedov, Alexei Solovchenko, Е. С. Лобакова
Software Mentions: 1
Published: almost 4 years ago

10.3390/biomedicines9091098

Lactococcus lactis Delivery of Surface Layer Protein A Protects Mice from Colitis by Re-Setting Host Immune Repertoire
Cited by: 2
Author(s): Ananta Prasad Arukha, Christian Furlan Freguia, Meerambika Mishra, J.K. Jha, Subhashinie Kariyawasam, Neil A. Fanger, Ellen M. Zimmermann, Gary R. Fanger, Bikash Sahay
Software Mentions: 1
Published: about 3 years ago

10.1186/s13068-020-01803-y

Performance and community structure dynamics of microbial electrolysis cells operated on multiple complex feedstocks
Cited by: 7
Author(s): Scott J. Satinover, Miguel Rodríguez, Maria Fernanda Campa, Terry C. Hazen, Abhijeet P. Borole
Software Mentions: 1
Published: about 4 years ago

10.1186/s13068-017-0863-4

Electricity-assisted production of caproic acid from grass
Cited by: 67
Author(s): Way Cern Khor, Stephen Andersen, Han Vervaeren, Korneel Rabaey
Software Mentions: 1
Published: over 7 years ago

10.1017/S0007114519002332

Inulin from Jerusalem artichoke tubers alleviates hyperglycaemia in high-fat-diet-induced diabetes mice through the intestinal microflora improvement
Cited by: 25
Author(s): Tao Shao, Qiuhong Yu, Tingshuo Zhu, Anhong Liu, Xiumei Gao, Xiaohua Long, Zhaopu Liu
Software Mentions: 1
Published: about 5 years ago

10.1007/s00227-016-2945-4

Where are the polyps? Molecular identification, distribution and population differentiation of Aurelia aurita jellyfish polyps in the southern North Sea area
Cited by: 23
Author(s): Lodewijk van Walraven, Floor M.F. Driessen, Judith van Bleijswijk, Anneke Bol, Pieternella C. Luttikhuizen, Joop W.P. Coolen, O.G. Bos, Adriaan Gittenberger, N. Schrieken, Victor Langenberg, Henk W. van der Veer
Software Mentions: 1
Published: over 8 years ago

10.1007/s10126-017-9766-4

Recovery of Previously Uncultured Bacterial Genera from Three Mediterranean Sponges
Cited by: 23
Author(s): Dennis Versluis, Kyle McPherson, Mark W. J. van Passel, Hauke Smidt, Detmer Sipkema
Software Mentions: 1
Published: over 7 years ago

10.3390/md17010060

Molecular Networking Reveals Two Distinct Chemotypes in Pyrroloiminoquinone-Producing Tsitsikamma favus Sponges
Cited by: 18
Author(s): Jarmo-Charles J. Kalinski, Samantha C. Waterworth, Xavier Siwe‐Noundou, Meesbah Jiwaji, Shirley Parker-Nance, Rui W. M. Krause, Kerry L. McPhail, Rosemary A. Dorrington
Software Mentions: 1
Published: almost 6 years ago

10.3390/md12020899

Bioprospecting from Marine Sediments of New Brunswick, Canada: Exploring the Relationship between Total Bacterial Diversity and Actinobacteria Diversity
Cited by: 35
Author(s): Katherine R. Duncan, Brad Haltli, Krista A Gill, Russell G. Kerr
Software Mentions: 1
Published: almost 11 years ago

10.3390/ma13102327

Electrochemical Bacterial Enrichment from Natural Seawater and Its Implications in Biocorrosion of Stainless-Steel Electrodes
Cited by: 2
Author(s): María José De La Fuente, Leslie K. Daille, Rodrigo De la Iglesia, Magdalena Walczak, Francisco Armijo, Gonzalo Pizarro, Ignacio T. Vargas
Software Mentions: 1
Published: over 4 years ago

10.1264/jsme2.ME13064

Differences in Bacterial Community Structure on <i>Hydrilla verticillata</i> and <i>Vallisneria americana</i> in a Freshwater Spring
Cited by: 31
Author(s): Nadine Gordon-Bradley, Despoina S. Lymperopoulou, Henry N. Williams
Software Mentions: 1
Published: almost 11 years ago

10.1264/jsme2.ME19021

Metabolic Potential of As-yet-uncultured Archaeal Lineages of <i>Candidatus</i> Hydrothermarchaeota Thriving in Deep-sea Metal Sulfide Deposits
Cited by: 10
Author(s): Shingo Kato, Shinsaku Nakano, Mariko Kouduka, Miho Hirai, Katsuhiko Suzuki, Takashi Itoh, Moriya Ohkuma, Yohey Suzuki
Software Mentions: 1
Published: almost 6 years ago

10.1002/mbo3.417

Keeping it in the family: Coevolution of latrunculid sponges and their dominant bacterial symbionts
Cited by: 27
Author(s): Gwynneth F. Matcher, Samantha C. Waterworth, Tara A. Walmsley, Tendayi Matsatsa, Shirley Parker-Nance, Michael T. Davies‐Coleman, Rosemary A. Dorrington
Software Mentions: 1
Published: about 8 years ago

10.1186/s40168-017-0295-1

Longitudinal development of the gut microbiome and metabolome in preterm neonates with late onset sepsis and healthy controls
Cited by: 174
Author(s): Christopher J. Stewart, Nicholas D. Embleton, Emma C. L. Marrs, Daniel P. Smith, Tatiana Fofanova, Andrew Nelson, Tom Skeath, John D. Perry, Joseph F. Petrosino, Janet Berrington, Stephen Cummings
Software Mentions: 1
Published: over 7 years ago

10.1186/s40168-020-00884-z

The gut microbiota regulates autism-like behavior by mediating vitamin B6 homeostasis in EphB6-deficient mice
Cited by: 59
Author(s): Ying Liu, Zhiyong Luo, Yu-Ying Hu, Yuewei Bi, Jian‐Ming Yang, Wen-Jun Zou, Ying Song, Liang Shi, Tong Shen, Shu-Ji Li, Lang Huang, Anni Zhou, Tianming Gao, Jianming Li
Software Mentions: 1
Published: over 4 years ago

10.1186/2049-2618-2-27

The nasal cavity microbiota of healthy adults
Cited by: 134
Author(s): Christine M. Bassis, Alice Tang, Vincent B. Young, Melissa A. Pynnonen
Software Mentions: 1
Published: over 10 years ago

10.3390/microorganisms9020218

Prokaryotic Diversity of the Composting Thermophilic Phase: The Case of Ground Coffee Compost
Cited by: 11
Author(s): Maria Papale, Ida Romano, Ilaria Finore, Angelina Lo Giudice, Alessandro Piccolo, Silvana Cangemi, Vincenzo Di Meo, Barbara Nicolaus, Annarita Poli
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms6010016

Core Sulphate-Reducing Microorganisms in Metal-Removing Semi-Passive Biochemical Reactors and the Co-Occurrence of Methanogens
Cited by: 28
Author(s): Maryam Rezadehbashi, Susan A. Baldwin
Software Mentions: 1
Published: over 6 years ago

10.3390/microorganisms7090343

Microbiota Composition and Functional Profiling Throughout the Gastrointestinal Tract of Commercial Weaning Piglets
Cited by: 51
Author(s): Raphaële Gresse, Frédérique Chaucheyras Durand, Lysiane Dunière, Stéphanie Blanquet‐Diot, Evelyne Forano
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms7090283

Changes in Oral Microbial Ecology of C57BL/6 Mice at Different Ages Associated with Sampling Methodology
Cited by: 15
Author(s): Angélica Hernández-Arriaga, Anja Baumann, Otto W. Witte, Christiane Frahm, Ina Bergheim, Amélia Camarinha‐Silva
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms9040721

Metagenomic Analysis of the Respiratory Microbiome of a Broiler Flock from Hatching to Processing
Cited by: 9
Author(s): Kelly A. Mulholland, Monique G. Robinson, Sharon J. Keeler, Timothy J. Johnson, Bonnie W. Weber, Calvin L. Keeler
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms8050687

High-Throughput Sequencing Reveals a Potentially Novel Sulfurovum Species Dominating the Microbial Communities of the Seawater–Sediment Interface of a Deep-Sea Cold Seep in South China Sea
Cited by: 18
Author(s): Qinglei Sun, Jian Zhang, Minxiao Wang, Lei Cao, Zheng Du, Yuanyuan Sun, Shiqi Liu, Chaolun Li, Li Sun
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms8122047

Methane-Oxidizing Communities in Lichen-Dominated Forested Tundra Are Composed Exclusively of High-Affinity USCα Methanotrophs
Cited by: 8
Author(s): Svetlana E. Belova, Olga V. Danilova, Anastasia A. Ivanova, Alexander Y. Merkel, Svetlana N. Dedysh
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms9071348

Bacterial Distribution, Biogenic Amine Contents, and Functionalities of Traditionally Made Doenjang, a Long-Term Fermented Soybean Food, from Different Areas of Korea
Cited by: 11
Author(s): Su-Ji Jeong, Myeong-Seon Ryu, Hee-Jong Yang, Xuan-Hao Wu, Do-Youn Jeong, Sunmin Park
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms4030023

Highly Variable Bacterial Communities Associated with the Octocoral Antillogorgia elisabethae
Cited by: 22
Author(s): Veronica Robertson, Brad Haltli, Erin P. McCauley, David P. Overy, Russell G. Kerr
Software Mentions: 1
Published: over 8 years ago

10.3390/microorganisms8071027

Impact of Probiotic Combination in InR[E19]/TM2 Drosophila melanogaster on Longevity, Related Gene Expression, and Intestinal Microbiota: A Preliminary Study
Cited by: 7
Author(s): S. Ma, Hao Sun, Wei‐Cai Yang, Mingfu Gao, Hui Xu
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms9081728

The Abundance and Taxonomic Diversity of Filterable Forms of Bacteria during Succession in the Soils of Antarctica (Bunger Hills)
Cited by: 0
Author(s): A. G. Kudinova, Andrey V. Dolgih, Н. С. Мергелов, I. G. Shorkunov, О. А. Маслова, Magdalena Petrová
Software Mentions: 1
Published: over 3 years ago

10.3390/microorganisms8040484

Closely Located but Totally Distinct: Highly Contrasting Prokaryotic Diversity Patterns in Raised Bogs and Eutrophic Fens
Cited by: 21
Author(s): Anastasia A. Ivanova, Alexey V. Beletsky, Andrey L. Rakitin, Vitaly V. Kadnikov, Dmitriy Philippov, Andrey V. Mardanov, Nikolai V. Ravin, Svetlana N. Dedysh
Software Mentions: 1
Published: over 4 years ago

10.18699/VJ20.610

Fecal microbiome change in patients with ulcerative colitis after fecal microbiota transplantation
Cited by: 3
Author(s): Artem Tikunov, В. В. Морозов, Аlexander N. Shvalov, Alevtina Bardashevа, Е. В. Шрайнер, О. А. Максимова, И. О. Волошина, Vera Morozova, В. В. Власов, Nina Tikunova
Software Mentions: 1
Published: over 4 years ago

10.3390/v11060518

Effects of Intranasal Pseudorabies Virus AH02LA Infection on Microbial Community and Immune Status in the Ileum and Colon of Piglets
Cited by: 12
Author(s): Chuanjian Zhang, Yamei Liu, Saisai Chen, Qiao Ye, Yating Zheng, Miao Xu, Zhisheng Wang, Jun Hou, Jichun Wang, Hongjie Fan
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-017-2352-9

Bacterial microbiota associated with Rhipicephalus sanguineus (s.l.) ticks from France, Senegal and Arizona
Cited by: 34
Author(s): Magalie René‐Martellet, Guillaume Minard, Raphaël Massot, Van Trân Van, Claire Valiente Moro, Luc Chabanne, Patrick Mavingui
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.9418

Assessment of biomass potentials of microalgal communities in open pond raceways using mass cultivation
Cited by: 15
Author(s): Seung-Woo Jo, Jeong-Mi Do, Ho Na, Ji Won Hong, Il-Sup Kim, Ho-Sung Yoon
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.5468

Investigating diversity of pathogenic microbes in commercial bait trade water
Cited by: 14
Author(s): Andrew R. Mahon, Dean J. Horton, Deric R. Learman, Lucas R. Nathan, Christopher L. Jerde
Software Mentions: 1
Published: about 6 years ago

10.7717/peerj.3635

Taxonomic and chemical assessment of exceptionally abundant rock mine biofilm
Cited by: 4
Author(s): Karolina Tomczyk-Żak, Paweł Szczęsny, Robert Gromadka, Urszula Zielenkiewicz
Software Mentions: 1
Published: over 7 years ago

10.7717/peerj.8352

Bacterial inoculations can perturb the growth trajectory of diatoms with an existing microbiome
Cited by: 2
Author(s): L. Baker, Paul F. Kemp
Software Mentions: 1
Published: almost 5 years ago

10.7717/peerj.2803

Microbial communities mediating algal detritus turnover under anaerobic conditions
Cited by: 18
Author(s): J. Morrison, Chelsea L. Murphy, Kristina Baker, Richard M. Zamor, Steve Nikolai, Shawn M. Wilder, Mostafa S. Elshahed
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pbio.2003502

“Pomacytosis”—Semi-extracellular phagocytosis of cyanobacteria by the smallest marine algae
Cited by: 25
Author(s): Nina A. Kamennaya, Gabrielle Kennaway, Bernhard M. Fuchs, Mikhail V. Zubkov
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pntd.0003929

A Comparison between Transcriptome Sequencing and 16S Metagenomics for Detection of Bacterial Pathogens in Wildlife
Cited by: 55
Author(s): Maria Razzauti, Maxime Galan, Maria Bernard, Sarah Maman, Christophe Klopp, Nathalie Charbonnel, Muriel Vayssier‐Taussat, Marc Éloit, Jean‐François Cosson
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0040117

Ecology of Root Colonizing Massilia (Oxalobacteraceae)
Cited by: 225
Author(s): Maya Ofek, Yitzhak Hadar, Dror Minz
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0030273

Host Genetics and Environmental Factors Regulate Ecological Succession of the Mouse Colon Tissue-Associated Microbiota
Cited by: 45
Author(s): Philip Smith, Jay Siddharth, Ruth Pearson, Nicholas Holway, Mark Shaxted, Margaret H. Butler, Natalie Clark, Joanna Jamontt, Robert P. Watson, Devika Sanmugalingam, Scott J. Parkinson
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0188634

Effects of Lactobacillus acidophilus on gut microbiota composition in broilers challenged with Clostridium perfringens
Cited by: 63
Author(s): Zhui Li, Weiwei Wang, Dan Liu, Yuming Guo
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0025771

Influence of Uranium on Bacterial Communities: A Comparison of Natural Uranium-Rich Soils with Controls
Cited by: 63
Author(s): Laure Mondani, Karim Benzerara, Marie Carrière, Richard Christen, Yannick Mamindy-Pajany, Laureline Février, Nicolas Marmier, Wafa Achouak, Pascal Nardoux, Catherine Berthomieu, Virginie Chapon
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0051897

Pyrosequencing Reveals the Influence of Organic and Conventional Farming Systems on Bacterial Communities
Cited by: 156
Author(s): Ru Li, Ehsan Khafipour, Denis O. Krause, Martin H. Entz, Teresa R. de Kievit, W. G. Dilantha Fernando
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0017769

What's New Is Old: Resolving the Identity of Leptothrix ochracea Using Single Cell Genomics, Pyrosequencing and FISH
Cited by: 88
Author(s): Emily J. Fleming, Amy Langdon, Manuel Martínez‐García, Ramunas Stepanauskas, Nicole Poulton, E. Dashiell P. Masland, David Emerson
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0243760

Ecological niche differentiation in Chiroxiphia and Antilophia manakins (Aves: Pipridae)
Cited by: 4
Author(s): Mariana Villegas, Bette A. Loiselle, Rebecca T. Kimball, John G. Blake
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0089682

Diversity of Rumen Bacteria in Canadian Cervids
Cited by: 64
Author(s): Robert J. Gruninger, Christoph Wilhelm Sensen, Tim A. McAllister, Robert J. Forster
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0215029

[NiFe]-hydrogenases are constitutively expressed in an enriched Methanobacterium sp. population during electromethanogenesis
Cited by: 10
Author(s): Elisabet Perona-Vico, Ramiro Blasco-Gómez, Jesús Colprim, Sebastià Puig, Lluís Bañeras
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0018169

Eukaryotic Richness in the Abyss: Insights from Pyrotag Sequencing
Cited by: 174
Author(s): Jan Pawłowski, Richard Christen, Béatrice Lecroq, Dipankar Bachar, Hamid Reza Shahbazkia, Linda Amaral‐Zettler, Laure Guillou
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0058203

Dandruff Is Associated with Disequilibrium in the Proportion of the Major Bacterial and Fungal Populations Colonizing the Scalp
Cited by: 131
Author(s): Cécile Clavaud, Roland Jourdain, Avner Bar-Hen, Magali Tichit, Christiane Bouchier, Florence Pouradier, Charles El Rawadi, Jacques Guillot, Florence Ménard-Szczebara, Lionel Breton, Jean‐Paul Latgé, Isabelle Mouyna
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0223543

Extensive culturomics of 8 healthy samples enhances metagenomics efficiency
Cited by: 32
Author(s): Ami Diakite, Grégory Dubourg, Niokhor Dione, Pamela Afouda, Sara Bellali, Issa Isaac Ngom, Camille Valles, Matthieu Million, Anthony Levasseur, F. Cadoret, Jean-Christophe Lagier, Didier Raoult
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0068648

Prospecting Environmental Mycobacteria: Combined Molecular Approaches Reveal Unprecedented Diversity
Cited by: 34
Author(s): Alessandra Pontiroli, Tanya T. Khera, Brian B. Oakley, Sarah Mason, Scot E. Dowd, Emma R. Travis, Girum Erenso, Abraham Aseffa, Orin Courtenay, Elizabeth M. H. Wellington
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0084441

Effect of Metal Oxide Nanoparticles on Microbial Community Structure and Function in Two Different Soil Types
Cited by: 181
Author(s): Carlos S. Frenk, Tal Ben-Moshe, Ishai Dror, Brian Berkowitz, Dror Minz
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0079061

Brood Ball-Mediated Transmission of Microbiome Members in the Dung Beetle, Onthophagus taurus (Coleoptera: Scarabaeidae)
Cited by: 68
Author(s): Anne M. Estes, David J. Hearn, Emilie C. Snell‐Rood, Feindler Michele, Karla Feeser, Abebe Tselotie, Julie C. Dunning Hotopp, Armin P. Moczek
Software Mentions: 1
Published: about 11 years ago

10.1038/s41419-019-1638-6

Gegen Qinlian decoction enhances the effect of PD-1 blockade in colorectal cancer with microsatellite stability by remodelling the gut microbiota and the tumour microenvironment
Cited by: 109
Author(s): Ji Lv, Yitao Jia, Jing Li, Wentao Kuai, Yang Li, Fang Guo, Xinjian Xu, Zhaolong Zhao, Jian Lv, Zhongxin Li
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9122597

Adaptive Immunity and Pathogenesis of Diabetes: Insights Provided by the α4–Integrin Deficient NOD Mouse
Cited by: 3
Author(s): Salim Oulghazi, Sarah K Wegner, Gabriele Spohn, Nina Müller, Sabine Harenkamp, Albrecht Stenzinger, Thalia Papayannopoulou, Halvard Bönig
Software Mentions: 1
Published: almost 4 years ago

10.3390/diagnostics11081461

Next-Generation Sequencing Analysis of Root Canal Microbiota Associated with a Severe Endodontic-Periodontal Lesion
Cited by: 5
Author(s): Alessio Buonavoglia, Gianvito Lanave, Michele Camero, Marialaura Corrente, Antonio Parisi, Vito Martella, Carlo Prati
Software Mentions: 1
Published: over 3 years ago

10.1002/edm2.190

Gut microbiota and metabolic marker alteration following dietary isoflavone‐photoperiod interaction
Cited by: 6
Author(s): Mario G. Oyola, Ryan C. Johnson, Bradly M. Bauman, K. G. Frey, Ashley L. Russell, Madelaine Cho‐Clark, Katelyn N. Buban, Kimberly A. Bishop‐Lilly, D. Scott Merrell, Robert J. Handa, Tao Wu
Software Mentions: 1
Published: about 4 years ago

10.1186/s40793-021-00385-y

North Sea spring bloom-associated Gammaproteobacteria fill diverse heterotrophic niches
Cited by: 23
Author(s): Ben Francis, Tim Urich, Annett Mikolasch, Hanno Teeling, Rudolf Amann
Software Mentions: 1
Published: over 3 years ago

10.1186/s12302-018-0179-4

Does the antidiabetic drug metformin affect embryo development and the health of brown trout (Salmo trutta f. fario)?
Cited by: 24
Author(s): Stefanie Jacob, Andreas Dötsch, Sarah Knoll, Heinz‐R. Köhler, Eike Thorben Rogall, Dominic A. Stoll, Selina Tisler, Carolin Hühn, Thomas Schwartz, Christian Zwiener, Rita Triebskorn
Software Mentions: 1
Published: almost 6 years ago

10.1002/fsn3.1955

Effects of dietary energy levels on rumen fermentation, microbiota, and gastrointestinal morphology in growing ewes
Cited by: 9
Author(s): Qiye Wang, Yancan Wang, Xin Wang, Chunpeng Dai, Wensheng Tang, Jianzhong Li, Pengfei Huang, Yali Li, Xueqin Ding, Jing Huang, Tarique Hussain, Huansheng Yang, Mingzhi Zhu
Software Mentions: 1
Published: about 4 years ago

10.3389/fcimb.2019.00381

FAM96A Protects Mice From Dextran Sulfate Sodium (DSS)-Induced Colitis by Preventing Microbial Dysbiosis
Cited by: 14
Author(s): Ang Yin, Yang Luo, Wei Chen, Mengqi He, Jin Deng, Ning Zhao, Lulu Cao, Lu Wang
Software Mentions: 1
Published: about 5 years ago

10.3389/fcimb.2020.00376

High-Fat Diet Induced Alteration of Mice Microbiota and the Functional Ability to Utilize Fructooligosaccharide for Ethanol Production
Cited by: 30
Author(s): Raju Singh, Diana Abu Halaka, Zvi Hayouka, Oren Tirosh
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2020.589338

Dysbacteriosis of the Intestinal Flora Is an Important Reason for the Death of Adult House Flies Caused by Beauveria bassiana
Cited by: 5
Author(s): Ruiling Zhang, Shuo Feng, Xiaochen Xie, Zhongdong Huang, Qianbing Wan, Shumin Wang, Zhang Zhong
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2019.02224

Thermoanaerosceptrum fracticalcis gen. nov. sp. nov., a Novel Fumarate-Fermenting Microorganism From a Deep Fractured Carbonate Aquifer of the US Great Basin
Cited by: 14
Author(s): Scott D. Hamilton-Brehm, Laura E. Stewart, Mavrik Zavarin, Matt Caldwell, Paul A. Lawson, Tullis C. Onstott, Joseph J. Grzymski, Iva Neveux, Barbara Sherwood Lollar, Cynthia Russell, Duane P. Moser
Software Mentions: 1
Published: about 5 years ago

10.3389/fmicb.2018.00858

Low-Light Anoxygenic Photosynthesis and Fe-S-Biogeochemistry in a Microbial Mat
Cited by: 18
Author(s): Sebastian Haas, Dirk de Beer, Judith M. Klatt, Artur Fink, Rebecca McCauley Rench, Trinity L. Hamilton, Volker Meyer, Brian Kakuk, Jennifer L. Macalady
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2013.00299

Quantitative and phylogenetic study of the Deep Sea Archaeal Group in sediments of the Arctic mid-ocean spreading ridge
Cited by: 41
Author(s): Steffen Leth Jørgensen, Ingunn H. Thorseth, Rolf B. Pedersen, Tamara Baumberger, Christa Schleper
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2013.00160

A comparative study of microbial diversity and community structure in marine sediments using poly(A) tailing and reverse transcription-PCR
Cited by: 11
Author(s): Takao Hoshino, Fumio Inagaki
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2017.00131

Identity, Abundance, and Reactivation Kinetics of Thermophilic Fermentative Endospores in Cold Marine Sediment and Seawater
Cited by: 27
Author(s): Marta Volpi, Bente Aagaard Lomstein, Andreas Sichert, Hans Røy, Bo Barker Jørgensen, Kasper Urup Kjeldsen
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2017.00451

Lack of Evidence That Selenium-Yeast Improves Chicken Health and Modulates the Caecal Microbiota in the Context of Colonization by Campylobacter jejuni
Cited by: 19
Author(s): Alexandre Thibodeau, Ann Letellier, Étienne Yergeau, Guillaume Larrivière-Gauthier, Philippe Fravalo
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.01945

Microbial Processes and Microbial Communities in the Water Column of the Polar Meromictic Lake Bol’shie Khruslomeny at the White Sea Coast
Cited by: 9
Author(s): Alexander S Savvichev, Vitaly V. Kadnikov, Igor I Rusanov, Alexey V. Beletsky, E. D. Krasnova, Dmitry A. Voronov, A. Yu. Kallistova, E F Veslopolova, Е. Е. Захарова, N. M. Kokryatskaya, G. N. Losyuk, Nikolai A Demidenko, Nikolai A Belyaev, Pavel Sigalevich, Andrey V. Mardanov, Nikolai V. Ravin, Nikolai V. Pimenov
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2016.00650

Performance of 16s rDNA Primer Pairs in the Study of Rhizosphere and Endosphere Bacterial Microbiomes in Metabarcoding Studies
Cited by: 179
Author(s): Bram Beckers, Michiel Op De Beeck, Sofie Thijs, Sascha Truyens, Nele Weyens, Wout Boerjan, Jaco Vangronsveld
Software Mentions: 1
Published: over 8 years ago

10.3389/fmicb.2018.01714

Resistance and Recovery of Methane-Oxidizing Communities Depends on Stress Regime and History; A Microcosm Study
Cited by: 24
Author(s): Henri van Kruistum, Paul L. E. Bodelier, Adrian Ho, Marion Meima-Franke, Annelies J. Veraart
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2015.00138

Plant genotype-specific archaeal and bacterial endophytes but similar Bacillus antagonists colonize Mediterranean olive trees
Cited by: 130
Author(s): Henry Müller, Christian Berg, Blanca B. Landa, Anna Auerbach, Christine Moissl-Eichinger, Gabriele Berg
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2015.00307

Microbial diversity on Icelandic glaciers and ice caps
Cited by: 74
Author(s): Stefanie Lutz, Alexandre M. Anesio, Arwyn Edwards, Liane G. Benning
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2020.593056

Dietary Montmorillonite Improves the Intestinal Mucosal Barrier and Optimizes the Intestinal Microbial Community of Weaned Piglets
Cited by: 10
Author(s): Han Liang, Congmin Wang, Xueling Gu, Jing Zhao, Cunxi Nie, Wenju Zhang, Xi Ma
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2015.00863

Response of bacterioplankton to iron fertilization of the Southern Ocean, Antarctica
Cited by: 15
Author(s): Sanjay Singh, Kotakonda Arunasri, Raj Kishor Kapardar, Hara Kishore Kankipati, Pasupuleti Sreenivasa Rao, Pratibha Mambatta Sankaranarayanan, Sundareswaran R. Vetaikorumagan, Sathyanarayana Reddy Gundlapally, N. Ramaiah, Sisinthy Shivaji
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2015.00901

Bacterial diversity and successional patterns during biofilm formation on freshly exposed basalt surfaces at diffuse-flow deep-sea vents
Cited by: 24
Author(s): Lara K. Gulmann, Stace E. Beaulieu, Timothy M. Shank, Kan Ding, William E. Seyfried, Stefan M. Sievert
Software Mentions: 1
Published: about 9 years ago

10.3389/fmicb.2020.564376

Modulation of the Gut Microbiota by Shen-Yan-Fang-Shuai Formula Improves Obesity Induced by High-Fat Diets
Cited by: 3
Author(s): Zhen Wang, Jun Lu, Jingwei Zhou, Wei Sun, Qin Yang, Weihong Chen, Yabin Gao, Ruibing Yang, Sinan Ai, Zhongjie Liu, Yingbo Guo, Wei Jing Liu, Yaoxian Wang, Liang Peng
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2020.01489

Diversity and Bioactivity of Endophytes From Angelica sinensis in China
Cited by: 8
Author(s): Xinguo Zhang, Si-Jia Guo, Wenna Wang, Guo-Xing Wei, Guo-Yan Ma, Xiangyuan Ma
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2017.01294

Unraveling Core Functional Microbiota in Traditional Solid-State Fermentation by High-Throughput Amplicons and Metatranscriptomics Sequencing
Cited by: 150
Author(s): Zhewei Song, Hai Du, Yan Zhang, Yan Xu
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2018.01166

Marked Response in Microbial Community and Metabolism in the Ileum and Cecum of Suckling Piglets After Early Antibiotics Exposure
Cited by: 48
Author(s): Miao Yu, Chunlong Mu, Chuanjian Zhang, Yu‐Xiang Yang, Yong Su, Weiyun Zhu
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2018.00384

Assessment of Fecal Indicator Bacteria and Potential Pathogen Co-Occurrence at a Shellfish Growing Area
Cited by: 31
Author(s): A. Leight, Byron C. Crump, Raleigh R. Hood
Software Mentions: 1
Published: over 6 years ago

10.3389/fmicb.2020.585066

Naringin Attenuates High Fat Diet Induced Non-alcoholic Fatty Liver Disease and Gut Bacterial Dysbiosis in Mice
Cited by: 85
Author(s): Hongna Mu, Qi Zhou, Ruiyue Yang, Jie Zeng, Xianghui Li, Ranran Zhang, Weiqing Tang, Hongxia Li, Siming Wang, Tao Shen, Xiuqing Huang, Lin Dou, Juan Dong
Software Mentions: 1
Published: about 4 years ago

10.3389/fmicb.2017.01346

Isolation of Uncultured Bacteria from Antarctica Using Long Incubation Periods and Low Nutritional Media
Cited by: 61
Author(s): André Arashiro Pulschen, Amanda Gonçalves Bendia, Ashwana D. Fricker, Vivian H. Pellizari, Douglas Galante, Fábio Rodrigues
Software Mentions: 1
Published: over 7 years ago

10.3389/fmicb.2020.608293

Feeding Limosilactobacillus fermentum K9-2 and Lacticaseibacillus casei K9-1, or Limosilactobacillus reuteri TMW1.656 Reduces Pathogen Load in Weanling Pigs
Cited by: 10
Author(s): Weilan Wang, R. T. Zijlstra, Michael G. Gänzle
Software Mentions: 1
Published: almost 4 years ago

10.3389/fmicb.2021.715601

Transmission of Bacterial Symbionts With and Without Genome Erosion Between a Beetle Host and the Plant Environment
Cited by: 8
Author(s): Jürgen C. Wierz, Paul Gaube, Dagmar Klebsch, Martin Kaltenpoth, Laura Flórez
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2017.01227

Microbial Populations of Stony Meteorites: Substrate Controls on First Colonizers
Cited by: 17
Author(s): Alastair W. Tait, Emma J. Gagen, Siobhan A. Wilson, Andrew G. Tomkins, Gordon Southam
Software Mentions: 1
Published: over 7 years ago