Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Sickle
https://packages.ecosyste.ms/registries/pypi.org/packages/Sickle
A lightweight OAI client library for Python
11 versions
Latest release: over 4 years ago
8 dependent packages
8,030 downloads last month
Papers Mentioning Sickle 740
10.1080/23802359.2017.1289346
The complete mitochondrial genome sequence of Populus davidiana DodeCited by: 7
Author(s): Mi Na Choi, Muho Han, Hyoshin Lee, Hong-Seog Park, Minyoung Kim, Jinhyun Kim, Yoon-Jeong Na, Seung-Woo Sim, Eung‐Jun Park
Software Mentions: 1
Published: almost 8 years ago
10.1099/mgen.0.000167
Transmission and lineage displacement drive rapid population genomic flux in cystic fibrosis airway infections of a Pseudomonas aeruginosa epidemic strainCited by: 17
Author(s): David Williams, Joanne L. Fothergill, Benjamin A. Evans, Jessica Caples, Sam Haldenby, Martin Walshaw, Michael A. Brockhurst, Craig Winstanley, Steve Paterson
Software Mentions: 1
Published: over 6 years ago
10.3390/microorganisms8040572
Resistome, Mobilome and Virulome Analysis of Shewanella algae and Vibrio spp. Strains Isolated in Italian Aquaculture CentersCited by: 25
Author(s): Vanessa Helena de Souza Zago, Laura Veschetti, Cristina Patuzzo, Giovanni Malerba, Maria M. Lleò
Software Mentions: 1
Published: over 4 years ago
10.3390/microorganisms8101599
Identification and Elimination of the Clinically Relevant Multi-Resistant Environmental Bacteria Ralstonia insidiosa in Primary Cell CultureCited by: 5
Author(s): Dennis Nurjadi, Sébastien Boutin, Katja Schmidt, Melinda Ahmels, Daniel Hasche
Software Mentions: 1
Published: about 4 years ago
10.3390/microorganisms9040849
Genetic Mutations That Confer Fluoride Resistance Modify Gene Expression and Virulence Traits of Streptococcus mutansCited by: 7
Author(s): Hyeon-Jeong Lee, Jihee Song, Jeong Nam Kim
Software Mentions: 1
Published: over 3 years ago
10.3390/microorganisms8091333
Sulfur and Methane-Oxidizing Microbial Community in a Terrestrial Mud Volcano Revealed by MetagenomicsCited by: 17
Author(s): Andrey V. Mardanov, Vitaly V. Kadnikov, Alexey V. Beletsky, Nikolai V. Ravin
Software Mentions: 1
Published: about 4 years ago
10.3390/microorganisms8060893
Genomic and Proteomic Characterization of the Extended-Spectrum β-Lactamase (ESBL)-Producing Escherichia coli Strain CCUG 73778: A Virulent, Nosocomial Outbreak StrainCited by: 5
Author(s): Daniel Jaén‐Luchoro, Antonio Busquets, Roger Karlsson, Francisco Salvà‐Serra, Christina Åhrén, Nahid Karami, Edward R. B. Moore
Software Mentions: 1
Published: over 4 years ago
10.3390/microorganisms9040688
Response of Pine Rhizosphere Microbiota to Foliar Treatment with Resistance-Inducing Bacteria against Pine Wilt DiseaseCited by: 8
Author(s): Gil Soo Han, Mohamed Mannaa, Namgyu Kim, Hee Won Jeon, Hyejung Jung, Hyun‐Hee Lee, Junheon Kim, Jung–Wook Park, Ae Ran Park, Jin-Cheol Kim, Young-Su Seo
Software Mentions: 1
Published: over 3 years ago
10.3390/microorganisms4010008
Extremophiles in an Antarctic Marine EcosystemCited by: 18
Author(s): Iain Dickinson, William P. Goodall‐Copestake, Michael A. S. Thorne, Thomas Schlitt, María Luisa Ávila-Jiménez, David A. Pearce
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12864-016-2717-z
Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorumCited by: 54
Author(s): Takao Kasuga, Mai Bui, Elizabeth A. Bernhardt, Tedmund J. Swiecki, Kamyar Aram, Liliana Cano, Joan Webber, C. M. Brasier, Caroline M. Press, Niklaus J. Grünwald, David M. Rizzo, Matteo Garbelotto
Software Mentions: 1
Published: over 8 years ago
10.3390/microorganisms8101529
Genome Analysis of a Marine Bacterium Halomonas sp. and Its Role in Nitrate Reduction under the Influence of PhotoelectronsCited by: 5
Author(s): Ying Liu, Haiyang Ding, Yuan Sun, Yan Li, Anhuai Lu
Software Mentions: 1
Published: about 4 years ago
10.3390/mi12050519
Techniques for the Detection of Sickle Cell Disease: A ReviewCited by: 33
Author(s): Wjdan A. Arishi, Hani A. Alhadrami, Mohammed Zourob
Software Mentions: 1
Published: over 3 years ago
10.1186/s40168-019-0732-4
A new family of uncultivated bacteria involved in methanogenesis from the ubiquitous osmolyte glycine betaine in coastal saltmarsh sedimentsCited by: 31
Author(s): Helen J. Jones, Eileen Kröber, Jason R. Stephenson, Michaela A. Mausz, Eleanor Jameson, Andrew Millard, Kevin J. Purdy, Yin Chen
Software Mentions: 1
Published: about 5 years ago
10.3389/fmicb.2015.00795
Transcriptome analysis of Enterococcus faecalis in response to alkaline stressCited by: 39
Author(s): Shujun Ran, Bin Liu, Wei Jiang, Zhe Sun, Liang Ji
Software Mentions: 1
Published: over 9 years ago
10.1264/jsme2.ME17015
Nitrogen Fixation Genes and Nitrogenase Activity of the Non-Heterocystous Cyanobacterium <i>Thermoleptolyngbya</i> sp. O-77Cited by: 21
Author(s): Ki Seok Yoon, Nga Nguyen, Kien Trung Tran, Kohei Tsuji, Seiji Ogo
Software Mentions: 1
Published: almost 8 years ago
10.1186/s40168-018-0548-7
A metagenomics roadmap to the uncultured genome diversity in hypersaline soda lake sedimentsCited by: 99
Author(s): Charlotte D. Vavourakis, Adrian‐Ștefan Andrei, Maliheh Mehrshad, Rohit Ghai, Dimitry Y. Sorokin, Gerard Muyzer
Software Mentions: 1
Published: about 6 years ago
10.1186/s40168-017-0253-y
Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface watersCited by: 25
Author(s): Xiaofen Wu, Karsten Pedersen, Johanna Edlund, Lena Eriksson, Mats E. Åström, Anders F. Andersson, Stefan Bertilsson, Mark Dopson
Software Mentions: 1
Published: over 7 years ago
10.1128/JVI.01159-17
Deep Sequencing of Foot-and-Mouth Disease Virus Reveals RNA Sequences Involved in Genome PackagingCited by: 17
Author(s): Greg Logan, Joseph Newman, Caroline F. Wright, Lidia Lasecka-Dykes, Daniel T. Haydon, Eleanor M. Cottam, Tobias J. Tuthill
Software Mentions: 1
Published: almost 7 years ago
10.1111/1751-7915.13035
Detection of novel syntrophic acetate-oxidizing bacteria from biogas processes by continuous acetate enrichment approachesCited by: 50
Author(s): Maria Westerholm, Bettina Müller, Abhijeet Singh, Oskar Karlsson Lindsjö, Anna Schnürer
Software Mentions: 1
Published: almost 7 years ago
10.3389/fmicb.2019.01409
Not Just a Pathogen? Description of a Plant-Beneficial Pseudomonas syringae StrainCited by: 47
Author(s): Alessandro Passera, Stéphane Compant, P. Casati, Maria Giovanna Maturo, Giovanna Battelli, F. Quaglino, Livio Antonielli, Domenico Salerno, Milena Brasca, Silvia Laura Toffolatti, Francesco Mantegazza, Massimo Delledonne, Birgit Mitter
Software Mentions: 1
Published: over 5 years ago
10.1186/s40168-017-0383-2
Aerobic proteobacterial methylotrophs in Movile Cave: genomic and metagenomic analysesCited by: 112
Author(s): Deepak Kumaresan, Jason R. Stephenson, Andrew C. Doxey, Hina Bandukwala, Elliot Brooks, Alexandra Hillebrand-Voiculescu, Andrew S. Whiteley, J. Colin Murrell
Software Mentions: 1
Published: almost 7 years ago
10.3389/fmicb.2018.02664
Conjugative Transfer of a Novel Staphylococcal Plasmid Encoding the Biocide Resistance Gene, qacACited by: 17
Author(s): Patrick T. LaBreck, Gregory K. Rice, Adrian C. Paskey, Emad M. Elassal, Regina Z. Cer, Natasha N. Law, Carey D. Schlett, Jason Bennett, Eugene V. Millar, Michael W. Ellis, Theron Hamilton, Kimberly A. Bishop‐Lilly, D. Scott Merrell
Software Mentions: 1
Published: about 6 years ago
10.1186/s42523-020-00065-1
Temporal changes in the gut microbiota in farmed Atlantic cod (Gadus morhua) outweigh the response to diet supplementation with macroalgaeCited by: 10
Author(s): Ciara Keating, M. Bolton‐Warberg, James Hinchcliffe, R. Davies, Sally Whelan, Alex H. L. Wan, Ross Fitzgerald, Simon J. Davies, Umer Zeeshan Ijaz, Cindy J. Smith
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2021.709051
Metagenomic Analysis of Antibiotic Resistance Genes in Untreated Wastewater From Three Different HospitalsCited by: 10
Author(s): Xiurong Guo, Nan Tang, Hui Lei, Qi Fang, Li Liu, Quan Zhou, Can Song
Software Mentions: 1
Published: about 3 years ago
10.1590/0074-02760200153
A novel Betacoronavirus characterised in collared peccaries from the Rio de Janeiro Zoo (Brazil) killed by unknown diseaseCited by: 2
Author(s): Mirela D’arc, Matheus Calvano Cosentino, Filipe Romero Rebello Moreira, Liliane T. F. Cavalcante, Anderson M. Augusto, Fernando Trocolli, Daniel G. Ubiali, Carlos Eduardo Verona, Marcelo A. Soares, André F. Santos
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-63707-z
Full genome sequencing of archived wild type and vaccine rinderpest virus isolates prior to their destructionCited by: 10
Author(s): Simon King, Paulina Rajko-Nenow, Honorata M. Ropiak, Paolo Ribeca, Carrie Batten, Michael D. Baron
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2020.01003
Metagenomic Analyses of Microbial and Carbohydrate-Active Enzymes in the Rumen of Dairy Goats Fed Different Rumen Degradable StarchCited by: 42
Author(s): Jing Shen, Zheng Li, Xiao Chen, Xiaoying Han, Yangchun Cao, Junhu Yao
Software Mentions: 1
Published: over 4 years ago
10.1128/MRA.00678-19
16S rRNA Gene Amplicon Profiling of Anaerobic Bulking-Associated Prokaryotic Microbiota in a Mesophilic Expanded Granular Sludge Bed Reactor for Beverage Wastewater TreatmentCited by: 1
Author(s): Takeshi Yamada, Jun Harada, Yuki Okazaki, Tsuyoshi Yamaguchi, Atsushi Nakano
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-020-63686-1
Circ-camk4 involved in cerebral ischemia/reperfusion induced neuronal injuryCited by: 29
Author(s): Zhaohuan Zhang, Yuerong Wang, Fĕi Li, Xiuling Liu, Hui Zhang, Zhongzheng Zhu, Hai Huang, Xiaohui Xu
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2017.00679
Guar Gum Stimulates Biogenic Sulfide Production at Elevated Pressures: Implications for Shale Gas ExtractionCited by: 10
Author(s): Sophie L. Nixon, Leanne Walker, Matthew Streets, Bob Eden, Christopher Boothman, Kevin G. Taylor, Jonathan R. Lloyd
Software Mentions: 1
Published: over 7 years ago
10.3390/ma9090742
Electricity Recovery from Municipal Sewage Wastewater Using a Hydrogel Complex Composed of Microbially Reduced Graphene Oxide and SludgeCited by: 25
Author(s): Naoko Yoshida, Yasushi Miyata, Ai Mugita, Kazuki Iida
Software Mentions: 1
Published: about 8 years ago
10.3389/fmicb.2018.01412
Lab to Field Assessment of the Ecotoxicological Impact of Chlorpyrifos, Isoproturon, or Tebuconazole on the Diversity and Composition of the Soil Bacterial CommunityCited by: 41
Author(s): Storck, Sofia Nikolaki, Chiara Perruchon, C Chabanis, Angela Sacchi, Giorgia Pertile, Céline Baguelin, Karas Pa, Aymé Spor, Marion Devers‐Lamrani, Papadopoulou Es, Olivier Sibourg, Cédric Malandain, Marco Trevisan, Federico Ferrari, Dimitrios G. Karpouzas, George Tsiamis, Fabrice Martin-Laurent
Software Mentions: 1
Published: over 6 years ago
10.1128/MRA.00091-21
Draft Genome Sequence of a Burkholderia cepacia Complex Strain Isolated from a Human Intra-abdominal AbscessCited by: 1
Author(s): Yuting Zhai, Kathryn DeSear, Kartikeya Cherabuddi, J. Glenn Morris, KwangCheol Casey Jeong
Software Mentions: 1
Published: over 3 years ago
10.3390/md17040200
Microbial Population Changes in Decaying Ascophyllum nodosum Result in Macroalgal-Polysaccharide-Degrading Bacteria with Potential Applicability in Enzyme-Assisted Extraction TechnologiesCited by: 17
Author(s): Maureen W. Ihua, Freddy Guihéneuf, Halimah O. Mohammed, Lekha Menon Margassery, Stephen A. Jackson, Dagmar B. Stengel, David J. Clarke, Alan D. W. Dobson
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2020.587556
Identification of a Stable Hydrogen-Driven Microbiome in a Highly Radioactive Storage Facility on the Sellafield SiteCited by: 10
Author(s): Sharon Ruiz-Lopez, Lynn Foster, Christopher Boothman, Nick Cole, Katherine Morris, Jonathan R. Lloyd
Software Mentions: 1
Published: almost 4 years ago
10.1128/MRA.01326-18
Complete Genome Sequence of the Hydrocarbon-Degrading Strain Achromobacter sp. B7, Isolated during Petroleum Hydrocarbon Bioremediation in the Valparaiso Region, ChileCited by: 5
Author(s): Valentina Méndez, Lisette Hernández, Francisco Salvà‐Serra, Daniel Jaén‐Luchoro, Roberto E. Durán, Bárbara Barra, Beatriz Piñeiro-Iglesias, Edward R. B. Moore, Michael Seeger
Software Mentions: 1
Published: about 6 years ago
10.3389/fmicb.2017.01156
An emm5 Group A Streptococcal Outbreak Among Workers in a Factory Manufacturing Telephone AccessoriesCited by: 11
Author(s): Mingliang Chen, Wenqing Wang, Lihong Tu, Yaoxian Zheng, Hào Pān, Wang Gang-yi, Yanxin Chen, Xi Zhang, Li-Yuan Zhu, Jian Chen, Min Chen
Software Mentions: 1
Published: over 7 years ago
10.1128/MRA.00030-21
Complete Genome Sequence of Escherichia coli Bacteriophage U136BCited by: 1
Author(s): Alita R. Burmeister, Denish Piya, Paul Turner
Software Mentions: 1
Published: over 3 years ago
10.1128/MRA.01113-19
Draft Genome Sequence of a Potential Plant Growth-Promoting Rhizobacterium, <i>Pseudomonas</i> sp. Strain CK-NBRI-02Cited by: 2
Author(s): Manish Gupta, Puneet Singh Chauhan, Sudhir K. Sopory, Sneh L. Singla‐Pareek, Ashwani Pareek, Nidhi Adlakha, Charanpreet Kaur
Software Mentions: 1
Published: about 5 years ago
10.1038/ismej.2015.259
Rapid evolution of microbe-mediated protection against pathogens in a worm hostCited by: 151
Author(s): Kayla C. King, Michael A. Brockhurst, Olga Vasieva, Steve Paterson, Alexander Betts, Suzanne A. Ford, Crystal L. Frost, Malcolm J. Horsburgh, Sam Haldenby, Gregory D. D. Hurst
Software Mentions: 1
Published: over 8 years ago