Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Sickle

https://packages.ecosyste.ms/registries/pypi.org/packages/Sickle

A lightweight OAI client library for Python
11 versions
Latest release: over 4 years ago
8 dependent packages
8,030 downloads last month

Papers Mentioning Sickle 740

10.1128/JVI.00861-19
Endogenous Avian Leukosis Virus in Combination with Serotype 2 Marek's Disease Virus Significantly Boosted the Incidence of Lymphoid Leukosis-Like Bursal Lymphomas in Susceptible Chickens
Cited by: 10
Author(s): Jody K. Mays, Alexis Black-Pyrkosz, Tamer Mansour, Brian C. Schutte, Shuang Chang, Kunzhe Dong, Henry D. Hunt, A. M. Fadly, Lei Zhang, Huanmin Zhang
Software Mentions: 1
Published: almost 5 years ago
10.1128/MRA.00946-19
Draft Genome Sequence of Comamonas testosteroni TA441, a Bacterium That Has a Cryptic Phenol Degradation Gene Cluster
Cited by: 3
Author(s): Hiroyuki Arai, Masaharu Ishii
Software Mentions: 1
Published: about 5 years ago
10.1186/s12864-018-5161-4
Development of polymorphic microsatellite markers by using de novo transcriptome assembly of Calanthe masuca and C. sinica (Orchidaceae)
Cited by: 3
Author(s): Chao Hu, Hongxing Yang, Kai Jiang, Ling Wang, Boyun Yang, Tung‐Yu Hsieh, Siren Lan, Wei-Chang Huang
Software Mentions: 1
Published: about 6 years ago
10.1186/s12977-018-0444-z
Next-generation sequencing analyses of the emergence and maintenance of mutations in CTL epitopes in HIV controllers with differential viremia control
Cited by: 8
Author(s): Diogo Gama Caetano, Fernanda Heloise Côrtes, Gonzalo Bello, Sylvia Lopes Maia Teixeira, Brenda Hoagland, Beatriz Grinsztejn, Valdiléa G. Veloso, Monick Lindenmeyer Guimarães, Mariza G. Morgado
Software Mentions: 1
Published: about 6 years ago
10.1186/s12284-016-0129-y
Rice Chloroplast Genome Variation Architecture and Phylogenetic Dissection in Diverse Oryza Species Assessed by Whole-Genome Resequencing
Cited by: 49
Author(s): Wei Tong, Taesung Kim, Yong‐Jin Park
Software Mentions: 1
Published: about 8 years ago
10.1186/s12864-015-2044-9
MicroRNA expression profiles of bovine milk exosomes in response to Staphylococcus aureus infection
Cited by: 151
Author(s): Jiajie Sun, Kshama Aswath, Steven G. Schroeder, John D. Lippolis, Timothy A. Reinhardt, Tad S. Sonstegard
Software Mentions: 1
Published: about 9 years ago
10.1186/s12864-017-4323-0
Differences in global gene expression in muscle tissue of Nellore cattle with divergent meat tenderness
Cited by: 25
Author(s): Larissa Fernanda Simielli Fonseca, Daniele Fernanda Jovino Gimenez, Danielly Beraldo dos Santos Silva, Roger A. Barthelson, Fernando Baldi, Jesus Aparecido Ferro, Lúcia Galvão de Albuquerque
Software Mentions: 1
Published: almost 7 years ago
10.1186/1471-2164-14-64
Comparison and contrast of genes and biological pathways responding to Marek’s disease virus infection using allele-specific expression and differential expression in broiler and layer chickens
Cited by: 32
Author(s): Sudeep Perumbakkam, William M. Muir, Alexis Black-Pyrkosz, Ron Okimoto, Hans H. Cheng
Software Mentions: 1
Published: almost 12 years ago
10.3390/ijms20071766
ytiB and ythA Genes Reduce the Uranium Removal Capacity of Bacillus atrophaeus
Cited by: 6
Author(s): Li Wang, Shen Xiao, Xiaoming Chen, Shilin Chen, Shanqiang Wang, Chao Wang, Yun Tang, Faqin Dong
Software Mentions: 1
Published: over 5 years ago
10.1038/srep27185
Efficient generation of transgenic cattle using the DNA transposon and their analysis by next-generation sequencing
Cited by: 24
Author(s): Soo‐Young Yum, Song Jeon Lee, Hyun Min Kim, Won Choi, Ji Hyun Park, Won Wu Lee, Hee Soo Kim, Hyeong Jong Kim, Seong Hun Bae, Je Hyeong Lee, Joo Yeong Moon, Ji Hyun Lee, Choong Il Lee, Bong Jun Son, Sang Hoon Song, Shuaifei Ji, Seong‐Jin Kim, Goo Jang
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0215505
Using eDNA to biomonitor the fish community in a tropical oligotrophic lake
Cited by: 35
Author(s): Martha Valdez‐Moreno, Natalia V. Ivanova, Manuel Elı́as-Gutiérrez, Stephanie Pedersen, Kyrylo Bessonov, Paul D. N. Hebert
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0245266
Integrated transcriptome, small RNA and degradome sequencing approaches proffer insights into chlorogenic acid biosynthesis in leafy sweet potato
Cited by: 5
Author(s): Yi Liu, Wen‐Jin Su, Lianjun Wang, Jian Lei, Shasha Chai, Wenying Zhang, Xinsun Yang
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0241793
Meningococcal B vaccine antigen FHbp variants among disease-causing Neisseria meningitidis B isolates, Italy, 2014–2017
Cited by: 5
Author(s): Anna Carannante, Cecilia Fazio, Arianna Neri, Florigio Lista, Silvia Fillo, Andrea Ciammaruconi, Paola Vacca, Paola Stefanelli
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0121237
Genome-Guided Analysis of Physiological Capacities of Tepidanaerobacter acetatoxydans Provides Insights into Environmental Adaptations and Syntrophic Acetate Oxidation
Cited by: 23
Author(s): Bettina Müller, Shahid Manzoor, Adnan Niazi, Erik Bongcam‐Rudloff, Anna Schnürer
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0179236
Impact of selected non-steroidal anti-inflammatory pharmaceuticals on microbial community assembly and activity in sequencing batch reactors
Cited by: 40
Author(s): Chenghua Jiang, Jinju Geng, Haidong Hu, Haijun Ma, Xingsheng Gao, Hongqiang Ren
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0148622
Sequencing, De Novo Assembly, and Annotation of the Transcriptome of the Endangered Freshwater Pearl Bivalve, Cristaria plicata, Provides Novel Insights into Functional Genes and Marker Discovery
Cited by: 53
Author(s): Bharat Bhusan Patnaik, Tae Hun Wang, Se Won Kang, Hyeon‐Jong Hwang, So Young Park, Eun Bi Park, Jong Min Chung, Dae Kwon Song, Changmu Kim, Soonok Kim, Yong Seok Lee, Yeon Soo Han, Hong Seog Park
Software Mentions: 1
Published: almost 9 years ago
10.1128/MRA.00801-19
16S rRNA Gene Amplicon Sequencing of Microbial Communities Involved in Anaerobic Bulking in a Mesophilic Expanded Granular Sludge Bed Reactor Treating Wastewater Discharged from a Japanese-Style Thickened Worcestershire Sauce-Producing Factory
Cited by: 1
Author(s): Takeshi Yamada, Jun Harada, Yuki Okazaki, Tsuyoshi Yamaguchi, Atsushi Nakano
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0164397
Genomic Epidemiology of Methicillin-Resistant Staphylococcus aureus in a Neonatal Intensive Care Unit
Cited by: 24
Author(s): Taj Azarian, Nizar Maraqa, Robert L. Cook, Judith A. Johnson, Christine Bailey, Sarah Wheeler, David J. Nolan, Mobeen H. Rathore, J. Glenn Morris, Marco Salemi
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0173186
Removing the needle from the haystack: Enrichment of Wolbachia endosymbiont transcripts from host nematode RNA by Cappable-seq™
Cited by: 6
Author(s): Ashley N. Luck, Barton E. Slatko, Jeremy M. Foster
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0188412
High Trypanosoma spp. diversity is maintained by bats and triatomines in Espírito Santo state, Brazil
Cited by: 34
Author(s): Maria Augusta Dario, Cristiane Varella Lisboa, Luciana Costa, Ricardo Moratelli, Monique Pereira Nascimento, Leonora Pires Costa, Yuri Luiz Reis Leite, Martin S. Llewellyn, Samanta Cristina das Chagas Xavier, André Luiz Rodrigues Roque, Ana María Jansen
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0225590
Phylogenetic position of the ‘extinct’ Fijian coconut moth, Levuana iridescens (Lepidoptera: Zygaenidae)
Cited by: 5
Author(s): Vazrick Nazari, Г. М. Тарманн, К. А. Ефетов
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0237546
Genetic diversity and population structure of the endangered orchid Pelatantheria scolopendrifolia (Orchidaceae) in Korea
Cited by: 13
Author(s): Seon A Yun, Hyun-Deok Son, Hyoung-Tak Im, Seung‐Chul Kim
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0164405
Century-Old DNA Barcodes Reveal Phylogenetic Placement of the Extinct Jamaican Sunset Moth, Urania sloanus Cramer (Lepidoptera: Uraniidae)
Cited by: 10
Author(s): Vazrick Nazari, B. Christian Schmidt, Sean W. J. Prosser, Paul D. N. Hebert
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0178855
Whole genome analysis of selected human and animal rotaviruses identified in Uganda from 2012 to 2014 reveals complex genome reassortment events between human, bovine, caprine and porcine strains
Cited by: 49
Author(s): Josephine Bwogi, Khuzwayo C. Jere, Charles Karamagi, Denis K. Byarugaba, Prossy Namuwulya, Frederick N. Baliraine, Ulrich Desselberger, Miren Iturriza‐Gómara
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0156426
Authentication of Herbal Supplements Using Next-Generation Sequencing
Cited by: 89
Author(s): Natalia V. Ivanova, Maria L. Kuzmina, Thomas Braukmann, Alex Borisenko, Evgeny Zakharov
Software Mentions: 1
Published: over 8 years ago
10.1128/MRA.01064-18
Complete Genomic Sequence of the Potyvirus Mashua Virus Y , Obtained from a 33-Year-Old Mashua ( Tropaeaolum tuberosum ) Sample
Cited by: 5
Author(s): Ian Adams, Adrian Fox, Neil Boonham, R. A. C. Jones
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0189993
Hybrid genome assembly and annotation of Paenibacillus pasadenensis strain R16 reveals insights on endophytic life style and antifungal activity
Cited by: 10
Author(s): Alessandro Passera, Luca Marcolungo, P. Casati, Milena Brasca, F. Quaglino, Chiara Cantaloni, Massimo Delledonne
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pntd.0006492
Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS
Cited by: 33
Author(s): Godfrey Bwire, David A. Sack, Mathieu Almeida, Shan Li, Joseph B. Voeglein, Amanda K. Debes, Atek Kagirita, Ambrose Buyinza, Christopher Garimoi Orach, O. Colin Stine
Software Mentions: 1
Published: over 6 years ago
10.1128/MRA.01326-20
Complete Genome Sequence of Bradyrhizobium sp. Strain BDV5040, Representative of Widespread Genospecies B in Australia
Cited by: 1
Author(s): Christine Oger-Desfeux, Jérôme Briolay, Philippe Oger, Bénédicte Lafay
Software Mentions: 1
Published: almost 4 years ago
10.1038/srep43144
A comparison of host gene expression signatures associated with infection in vitro by the Makona and Ecran (Mayinga) variants of Ebola virus
Cited by: 21
Author(s): Andrew Bosworth, Stuart Dowall, Isabel García-Dorival, Natasha Y. Rickett, Christine Bruce, David A. Matthews, Yongxiang Fang, Waleed Aljabr, John Kenny, Charlotte Nelson, Thomas R. Laws, E. Diane Williamson, James P. Stewart, Miles W. Carroll, Roger Hewson, Julian A. Hiscox
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0175639
Streptococcal Adhesin P (SadP) contributes to Streptococcus suis adhesion to the human intestinal epithelium
Cited by: 17
Author(s): Maria Laura Ferrando, Niels Willemse, Edoardo Zaccaria, Yvonne Pannekoek, Arie van der Ende, Constance Schultsz
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0196278
Nitrogen limitation, toxin synthesis potential, and toxicity of cyanobacterial populations in Lake Okeechobee and the St. Lucie River Estuary, Florida, during the 2016 state of emergency event
Cited by: 75
Author(s): Benjamin J. Kramer, Timothy W. Davis, Kevin A. Meyer, Barry H. Rosen, Jennifer A. Goleski, Gregory J. Dick, Oh Genesok, Christopher J. Gobler
Software Mentions: 1
Published: over 6 years ago
10.1038/srep43344
A randomised clinical study to determine the effect of a toothpaste containing enzymes and proteins on plaque oral microbiome ecology
Cited by: 79
Author(s): S E Adams, David H. Arnold, Barry Murphy, Peter R. Carroll, A. K. Green, Adrian Smith, Philip Marsh, T. Chen, Robert E. Marriott, M G Brading
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pntd.0005790
Small subunit ribosomal metabarcoding reveals extraordinary trypanosomatid diversity in Brazilian bats
Cited by: 36
Author(s): Maria Augusta Dario, Ricardo Moratelli, Philipp Schwabl, Ana María Jansen, Martin S. Llewellyn
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0128773
Genomic Comparison of Non-Typhoidal Salmonella enterica Serovars Typhimurium, Enteritidis, Heidelberg, Hadar and Kentucky Isolates from Broiler Chickens
Cited by: 47
Author(s): Akhilesh S. Dhanani, Glenn Block, Ken Dewar, Vincenzo Forgetta, Edward Topp, Robert G. Beiko, Moussa S. Diarra
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0201853
Generation and characterisation of recombinant FMDV antibodies: Applications for advancing diagnostic and laboratory assays
Cited by: 3
Author(s): Gareth Shimmon, Abhay Kotecha, Jingshan Ren, Amin S. Asfor, Joseph Newman, Stephen Berryman, Eleanor M. Cottam, Sarah Gold, Toby Tuthill, Donald P. King, Emiliana Brocchi, Andrew M. Q. King, Ray Owens, Elizabeth E. Fry, David I. Stuart, Alison Burman, Terry Jackson
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0164235
De Novo Sequencing and Assembly Analysis of the Pseudostellaria heterophylla Transcriptome
Cited by: 12
Author(s): Jun Li, Zhen Wei, Long Dengkai, Ling Ding, Anhui Gong, Chao Xiao, Wei-Ke Jiang, Xiaoqing Liu, Tao Zhou, Luqi Huang
Software Mentions: 1
Published: about 8 years ago
10.3390/ijms20174107
Plastid Genomes of Carnivorous Plants Drosera rotundifolia and Nepenthes × ventrata Reveal Evolutionary Patterns Resembling Those Observed in Parasitic Plants
Cited by: 12
Author(s): Eugeny V. Gruzdev, Vitaly V. Kadnikov, Alexey V. Beletsky, Е. З. Кочиева, Andrey V. Mardanov, K. G. Skryabin, Nikolai V. Ravin
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0189459
First insights into a type II toxin-antitoxin system from the clinical isolate Mycobacterium sp. MHSD3, similar to epsilon/zeta systems
Cited by: 6
Author(s): Daniel Jaén‐Luchoro, Francisco Aliaga-Lozano, Rosa M. Gomila, Margarita Gomila, Francisco Salvà‐Serra, Jorge Lalucat, Antonio Bennasar
Software Mentions: 1
Published: almost 7 years ago
10.1038/srep43327
Genetic variation architecture of mitochondrial genome reveals the differentiation in Korean landrace and weedy rice
Cited by: 12
Author(s): Wei Tong, Qiang He, Yong Jin Park
Software Mentions: 1
Published: over 7 years ago
10.1128/MRA.00420-21
Complete Genome Sequence of the Ammonia-Oxidizing Bacterium Nitrosospira sp. Strain NRS527, Isolated from the Rhizoplane of Paddy Rice
Cited by: 0
Author(s): Tatsunori Nakagawa, Y. Tsuchiya, Reiji Takahashi
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-017-01820-2
GIRK2 splice variants and neuronal G protein-gated K+ channels: implications for channel function and behavior
Cited by: 18
Author(s): Ezequiel Marrón Fernández de Velasco, Lei Zhang, Baovi N. Vo, Megan E. Tipps, Shannon Farris, Zhilian Xia, Allison Anderson, Nicholas Carlblom, C. David Weaver, Serena M. Dudek, Kevin Wickman
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pgen.1005141
Experimental Swap of Anopheles gambiae's Assortative Mating Preferences Demonstrates Key Role of X-Chromosome Divergence Island in Incipient Sympatric Speciation
Cited by: 34
Author(s): Fred Aboagye-Antwi, Nahla Alhafez, Gareth D. Weedall, Jessica Brothwood, Sharanjit Kandola, Douglas G. Paton, A. Fofana, Lisa Olohan, Mauro Pazmiño Betancourth, Nkiru Esther Ekechukwu, Rowida Baeshen, Sékou F. Traorè, Abdoulaye Diabaté, Fréderic Tripet
Software Mentions: 1
Published: over 9 years ago
10.1016/j.cell.2018.05.058
Anti-CRISPR Phages Cooperate to Overcome CRISPR-Cas Immunity
Cited by: 166
Author(s): Mariann Landsberger, Sylvain Gandon, Sean Meaden, Clare Rollie, Anne Chevallereau, Hélène Chabas, Angus Buckling, Edze R. Westra, Stineke van Houte
Software Mentions: 1
Published: over 6 years ago
10.1128/MRA.00189-19
Draft Genome Sequence of Urease-Producing <i>Pseudorhodobacter</i> sp. Strain E13, Isolated from the Yellow Sea in Gunsan, South Korea
Cited by: 1
Author(s): Si Chul Kim, Hyo‐Jung Lee
Software Mentions: 1
Published: over 5 years ago
10.1016/j.xcrm.2020.100153
Vascular Tumor Recapitulated in Endothelial Cells from hiPSCs Engineered to Express the SERPINE1-FOSB Translocation
Cited by: 5
Author(s): David G.P. van IJzendoorn, Daniela Salvatori, Xu Cao, Francijna van den Hil, Inge H. Briaire-de Bruijn, Daniëlle de Jong, Hailiang Mei, Christine L. Mummery, Károly Szuhai, Judith V.M.G. Bovée, Valeria V. Orlova
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pgen.1006191
The Landscape of A-to-I RNA Editome Is Shaped by Both Positive and Purifying Selection
Cited by: 69
Author(s): Yao Yu, Hongxia Zhou, Yawei Kong, Bohu Pan, Longxian Chen, Hongbing Wang, Pei Hao, Xuan Li
Software Mentions: 1
Published: over 8 years ago
10.1186/s13020-020-00364-4
Composition and function of rhizosphere microbiome of Panax notoginseng with discrepant yields
Cited by: 18
Author(s): Mengzhi Li, Zhongjian Chen, Jun Qian, Fang Wei, Guozhuang Zhang, Yong Wang, Guangfei Wei, Zhigang Hu, Lixin Dong, Shilin Chen
Software Mentions: 1
Published: over 4 years ago
10.3390/plants9070847
Transcriptome Sequencing and Chemical Analysis Reveal the Formation Mechanism of White Florets in Carthamus tinctorius L.
Cited by: 5
Author(s): Tingyan Qiang, Jiushi Liu, Yuqing Dong, Yinbo Ma, Bengang Zhang, Xueping Wei, Haitao Liu, Pei‐Gen Xiao
Software Mentions: 1
Published: over 4 years ago
10.1128/MRA.01104-20
Draft Genome Sequence of a Filamentous Anoxygenic Phototrophic Bacterium, “ <i>Candidatus</i> Roseilinea sp. Strain NK_OTU-006,” Recovered from Metagenomic Data of a Hot Spring Microbial Mat
Cited by: 2
Author(s): Joval N. Martinez, Shigeru Kawai, Mohit Saini, Marcus Tank, Satoshi Hanada, Vera Thiel
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-017-10335-9
Effects of toxic Microcystis aeruginosa on the silver carp Hypophthalmichtys molitrix revealed by hepatic RNA-seq and miRNA-seq
Cited by: 7
Author(s): Menghong Hu, Xiancheng Qu, Lisha Pan, Chunxue Fu, Peixuan Jia, Qigen Liu, Youji Wang
Software Mentions: 1
Published: about 7 years ago
10.1007/s00284-015-0846-2
Metagenomic Sequencing Unravels Gene Fragments with Phylogenetic Signatures of O2-Tolerant NiFe Membrane-Bound Hydrogenases in Lacustrine Sediment
Cited by: 1
Author(s): Jillian M. Couto, Umer Zeeshan Ijaz, Vernon R. Phoenix, Melanie Schirmer, William T. Sloan
Software Mentions: 1
Published: over 9 years ago
10.1016/j.dib.2018.12.045
Genomes of three bacteriophages from the deep subsurface aquifer
Cited by: 4
Author(s): Vitaly V. Kadnikov, Andrey V. Mardanov, Yulia A. Frank, Alexey V. Beletsky, О. В. Карначук, Nikolai V. Ravin
Software Mentions: 1
Published: almost 6 years ago
10.1016/j.dib.2018.06.095
The assembled transcriptome of the adult horn fly, Haematobia irritans
Cited by: 6
Author(s): Luísa N. Domingues, Felix D. Guerrero, Connor Cameron, Andrew Farmer, Kylie G. Bendele, Lane D. Foil
Software Mentions: 1
Published: over 6 years ago
10.1016/j.dib.2020.105143
Draft genome sequence data of Bacillus subtilis strain 9407, isolated from healthy apples in China
Cited by: 1
Author(s): Qingchao Zeng, Jianbo Xie, Yán Li, Xiaofei Gu, Qi Wang
Software Mentions: 1
Published: over 4 years ago
10.1016/j.dib.2018.03.001
Transcriptomic data of pre-meiotic stage of floret development in apomictic and sexual types of guinea grass (Panicum maximum Jacq.)
Cited by: 6
Author(s): A. Radhakrishna, Krishna Kumar Dwivedi, Manoj Srivastava, A. K. Roy, D. R. Malaviya, Pankaj Kaushal
Software Mentions: 1
Published: over 6 years ago
10.1186/s13007-014-0041-7
Mapping mutations in plant genomes with the user-friendly web application CandiSNP
Cited by: 22
Author(s): Graham J. Etherington, Jacqueline Monaghan, Cyril Zipfel, Dan MacLean
Software Mentions: 1
Published: almost 10 years ago
10.1016/j.dib.2019.103800
Metagenomic data of the microbial community of the chemocline layer of the meromictic subarctic Lake Bolshie Hruslomeny, North European Russia
Cited by: 2
Author(s): Vitaly V. Kadnikov, Alexander S Savvichev, Andrey V. Mardanov, Alexey V. Beletsky, Nikolai V. Ravin, Nikolai V. Pimenov
Software Mentions: 1
Published: over 5 years ago
10.1016/j.dib.2019.104722
Metagenomic data of the microbial community of lab-scale nitritation-anammox sequencing-batch bioreactor performing nitrogen removal from synthetic wastewater
Cited by: 5
Author(s): Andrey V. Mardanov, R.V. Kotlyarov, Alexey V. Beletsky, Yu. A. Nikolaev, A. Yu. Kallistova, В. А. Грачев, Yulia Y. Berestovskaya, Nikolai V. Pimenov, Nikolai V. Ravin
Software Mentions: 1
Published: almost 5 years ago
10.18632/oncotarget.14291
Heterogeneity in sarcoma cell lines reveals enhanced motility of tetraploid versus diploid cells
Cited by: 14
Author(s): Mohamed Jèmaà, Samer Abdallah, Gwendaline Lledo, Gaëlle Pérot, Tom Lesluyes, Catherine Teyssier, Pierre Roux, Juliette van Dijk, Frédéric Chibon, Ariane Abrieu, Nathalie Morin
Software Mentions: 1
Published: almost 8 years ago
10.7717/peerj.2222
Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria
Cited by: 33
Author(s): Edward W. Davis, Alexandra J. Weisberg, Javier F. Tabima, Niklaus J. Grünwald, Jeff H. Chang
Software Mentions: 1
Published: over 8 years ago
10.1128/MRA.00422-21
Complete Genome Sequence of Bacillus velezensis KOF112, an Antifungal Endophytic Isolate from Shoot Xylem of the Indigenous Japanese Wine Grape Vitis sp. cv. Koshu
Cited by: 1
Author(s): Kazuhiro Hamaoka, Shunji Suzuki
Software Mentions: 1
Published: over 3 years ago
10.7717/peerj.6871
Transcriptome analysis of<i>Chelidonium majus</i>elaiosomes and seeds provide insights into fatty acid biosynthesis
Cited by: 3
Author(s): Jian Wu, Linlin Peng, Shuang-Lin Dong, Xiaofei Xia, Liangcheng Zhao
Software Mentions: 1
Published: over 5 years ago
10.3390/pathogens9010060
Essential Gene Clusters Involved in Copper Tolerance Identified in Acinetobacter baumannii Clinical and Environmental Isolates
Cited by: 19
Author(s): Rapee Thummeepak, Renuka Pooalai, Charlotte Harrison, Lucy Gannon, Aunchalee Thanwisai, Narisara Chantratita, Andrew Millard, Sutthirat Sitthisak
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41426-018-0101-6
Have compensatory mutations facilitated the current epidemic of multidrug-resistant tuberculosis?
Cited by: 17
Author(s): Qingyun Liu, Tianyu Zuo, Peng Xu, Qi Jing, Jie Wu, Mingyu Gan, Chongguang Yang, Ravi Prakash, Guofeng Zhu, Howard Takiff, Qian Gao
Software Mentions: 1
Published: over 6 years ago
10.1038/s41426-018-0048-7
Phylogenetic analysis and virulence determinant of the host-adapted <i>Staphylococcus aureus</i> lineage ST188 in China
Cited by: 32
Author(s): Yanan Wang, Qingyun Liu, Qian Liu, Qianqian Gao, Huiying Lü, Hongping Meng, Yihui Xie, Qian Huang, Xiaowei Ma, Hua Wang, Juanxiu Qin, Qiong Li, Tianming Li, Qiang Xia, Min Li
Software Mentions: 1
Published: over 6 years ago
10.1038/s41598-017-17405-y
Whole-genome sequencing and SNV genotyping of ‘Nebbiolo’ (Vitis vinifera L.) clones
Cited by: 52
Author(s): Giorgio Gambino, Alessandra Dal Molin, Paolo Boccacci, Andrea Minio, C. Avanzato, Paola Tononi, Irene Perrone, Stefano Raimondi, Anna Schneider, Mario Pezzotti, F. Mannini, Ivana Gribaudo, Massimo Delledonne
Software Mentions: 1
Published: almost 7 years ago
10.1186/s13071-020-04079-1
Remarkable genetic diversity of Trypanosoma cruzi and Trypanosoma rangeli in two localities of southern Ecuador identified via deep sequencing of mini-exon gene amplicons
Cited by: 9
Author(s): Jalil Maiguashca Sánchez, Salem Sueto, Philipp Schwabl, Mario J. Grijalva, Martin S. Llewellyn, Jaime A. Costales
Software Mentions: 1
Published: over 4 years ago
10.12688/wellcomeopenres.12176.2
Identification of Equid herpesvirus 2 in tissue-engineered equine tendon
Cited by: 2
Author(s): Roisin Wardle, Jane A. Pullman, Sam Haldenby, Lorenzo Ressel, Marion Pope, Peter Clegg, Alan Radford, James Stewart, Mohammed Al-Saadi, Philip Dyer, Mandy J. Peffers
Software Mentions: 1
Published: about 7 years ago
10.2807/1560-7917.ES.2019.24.4.1800183
Cocirculation of Hajj and non-Hajj strains among serogroup W meningococci in Italy, 2000 to 2016
Cited by: 11
Author(s): Cecilia Fazio, Arianna Neri, Paola Vacca, Andrea Ciammaruconi, Milena Arghittu, Anna Maria Barbui, Caterina Vocale, Paola Bernaschi, Patrizia Isola, Irene Galanti, Antonella Mencacci, Rosella De Nittis, Maria Chironna, Anna Giammanco, Elisabetta Pagani, Alessandro Bisbano, Paola Stefanelli
Software Mentions: 1
Published: almost 6 years ago
10.3390/v12090994
Identification of the Immediate-Early Genes of Cyprinid Herpesvirus 2
Cited by: 16
Author(s): Ruizhe Tang, Liqun Lu, Beiyang Wang, Jiao Yu, Hao Wang
Software Mentions: 1
Published: about 4 years ago
10.3390/v11090806
MiDRMpol: A High-Throughput Multiplexed Amplicon Sequencing Workflow to Quantify HIV-1 Drug Resistance Mutations against Protease, Reverse Transcriptase, and Integrase Inhibitors
Cited by: 3
Author(s): Shambhu G. Aralaguppe, Anoop T. Ambikan, Manickam Ashokkumar, M. Milner Kumar, Luke Elizabeth Hanna, Wondwossen Amogne, Anders Sönnerborg, Ujjwal Neogi
Software Mentions: 1
Published: about 5 years ago
10.1128/mSystems.00261-20
Secondary Metabolism in the Gill Microbiota of Shipworms (Teredinidae) as Revealed by Comparison of Metagenomes and Nearly Complete Symbiont Genomes
Cited by: 12
Author(s): Marvin A. Altamia, Zhenjian Lin, Amaro E. Trindade-Silva, Iris Diana Uy, J. Reuben Shipway, Diego Veras Wilke, Gisela P. Concepción, Daniel L. Distel, Eric W. Schmidt, Margo G. Haygood
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-018-26963-8
The biogeochemical fate of nickel during microbial ISA degradation; implications for nuclear waste disposal
Cited by: 13
Author(s): Gina Kuippers, Christopher Boothman, Heath Bagshaw, Michael B. Ward, Rebecca Beard, Nicholas Bryan, Jonathan R. Lloyd
Software Mentions: 1
Published: over 6 years ago
10.3390/v11080701
Metagenomic Next-Generation Sequencing Reveal Presence of a Novel Ungulate Bocaparvovirus in Alpacas
Cited by: 6
Author(s): Deepak Kumar, Suman Chaudhary, Nanyan Lu, Michael Duff, Mathew Heffel, Caroline A. McKinney, Daniela Bedenice, Douglas Marthaler
Software Mentions: 1
Published: over 5 years ago
10.1038/s41598-018-28305-0
Nitrogen loading effects on nitrification and denitrification with functional gene quantity/transcription analysis in biochar packed reactors at 5 °C
Cited by: 21
Author(s): Shan He, Lili Ding, Yao Pan, Haidong Hu, Ye Lin, Hongqiang Ren
Software Mentions: 1
Published: over 6 years ago
10.3390/v10110584
Novel Mitoviruses and a Unique Tymo-Like Virus in Hypovirulent and Virulent Strains of the Fusarium Head Blight Fungus, Fusarium boothii
Cited by: 29
Author(s): Yukiyoshi Mizutani, Adane Abraham, Kazuma Uesaka, Hideki Kondō, Haruhisa Suga, Nobuhiro Suzuki, Sotaro Chiba
Software Mentions: 1
Published: about 6 years ago
10.29219/fnr.v63.1559
Ganoderma lucidum polysaccharide improves rat DSS-induced colitis by altering cecal microbiota and gene expression of colonic epithelial cells
Cited by: 72
Author(s): Jinli Xie, Yanghanxiu Liu, Bohui Chen, Guangwen Zhang, Shiyi Ou, Jianming Luo, Xichun Peng
Software Mentions: 1
Published: almost 6 years ago
10.1002/fsn3.1187
Alternating consumption of β‐glucan and quercetin reduces mortality in mice with colorectal cancer
Cited by: 23
Author(s): Jiamei Qi, Juntong Yu, Yuetong Li, Jianming Luo, Cheng Zhang, Shiyi Ou, Guangwen Zhang, Xinquan Yang, Xichun Peng
Software Mentions: 1
Published: about 5 years ago
10.1186/1743-422X-11-42
Genomic variation in macrophage-cultured European porcine reproductive and respiratory syndrome virus Olot/91 revealed using ultra-deep next generation sequencing
Cited by: 15
Author(s): Zen H. Lu, Alexander Brown, Alastair Wilson, Jay G. Calvert, M. Balasch, Pablo Fuentes-Utrilla, Julia Loecherbach, Frances Turner, Richard Talbot, Alan Archibald, Tahar Aït-Ali
Software Mentions: 1
Published: over 10 years ago
10.1128/MRA.00173-19
Draft Genome Sequence of Paraburkholderia sp. UYCP14C, a Rhizobium Strain Isolated from Root Nodules of Calliandra parvifolia
Cited by: 3
Author(s): Mauricio Langleib, Martín Beracochea, María Eléxpuru Zabaleta, Federico Battistoni, José Sotelo‐Silveira, Elena Fabiano, Andrés Iriarte, Raúl Platero
Software Mentions: 1
Published: over 5 years ago
10.1128/MRA.00418-21
Draft Genome Sequence of Sicyoidochytrium minutum DNA Virus Strain 001
Cited by: 0
Author(s): Yumi Murakoshi, Takayuki Shimeki, Daiske Honda, Yoshimi Takao
Software Mentions: 1
Published: over 3 years ago
10.1128/MRA.00468-19
Draft Genome Sequence of an Endophytic Biocontrol Bacterium, Bacillus velezensis PG12, Isolated from Apple Fruit
Cited by: 8
Author(s): Qingchao Zeng, Jianbo Xie, Yán Li, Xinyi Chen, Wang Qi
Software Mentions: 1
Published: about 5 years ago
10.1186/s12864-017-3868-2
Comparative transcriptomic analysis of the evolution and development of flower size in Saltugilia (Polemoniaceae)
Cited by: 17
Author(s): Jacob B. Landis, Douglas E. Soltis, Pamela S. Soltis
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2164-15-828
A universal protocol to generate consensus level genome sequences for foot-and-mouth disease virus and other positive-sense polyadenylated RNA viruses using the Illumina MiSeq
Cited by: 63
Author(s): Greg Logan, Graham Freimanis, David J. King, Begoña Valdazo-González, Katarzyna Bachanek‐Bankowska, Nicholas D. Sanderson, Nick J. Knowles, Donald P. King, Eleanor M. Cottam
Software Mentions: 1
Published: about 10 years ago
10.1128/MRA.00690-19
Mitochondrial Genome Sequences of Diorhabda carinata and Diorhabda carinulata , Two Beetle Species Introduced to North America for Biological Control
Cited by: 2
Author(s): Amanda R. Stahlke, A. Zeynep Özsoy, Dan W. Bean, Paul A. Hohenlohe
Software Mentions: 1
Published: about 5 years ago
10.1002/vms3.411
Ten cases of <i>Mycobacterium avium</i> subsp. <i>hominissuis</i> infections linked to equine abortions in Japan, 2018–2019
Cited by: 2
Author(s): Yuta Kinoshita, Mari Takechi, Eri Uchida‐Fujii, Kunio Miyazawa, Toshio Nukada, Hidekazu Niwa
Software Mentions: 1
Published: almost 4 years ago
10.1128/MRA.00423-21
Complete Genome Sequence of Cupriavidus necator KK10, an Azaarene-Degrading and Polyhydroxyalkanoate-Producing Soil Bacterium
Cited by: 3
Author(s): Jiro F. Mori, Miho Nagai, Robert A. Kanaly
Software Mentions: 1
Published: over 3 years ago
10.3390/molecules23123329
RNA–Protein Interactions Prevent Long RNA Duplex Formation: Implications for the Design of RNA-Based Therapeutics
Cited by: 0
Author(s): Eckart Bindewald, Li-Shang Dai, Wojciech K. Kasprzak, Tae-Jin Kim, Shuo Gu, Bruce A. Shapiro
Software Mentions: 1
Published: almost 6 years ago
10.3389/fcimb.2020.00222
A Pangenome Approach for Discerning Species-Unique Gene Markers for Identifications of Streptococcus pneumoniae and Streptococcus pseudopneumoniae
Cited by: 15
Author(s): Lucia Gonzales-Silès, Roger Karlsson, Patrik Schmidt, Francisco Salvà‐Serra, Daniel Jaén‐Luchoro, Susann Skovbjerg, Edward R. B. Moore, Margarita Gomila
Software Mentions: 1
Published: over 4 years ago
10.1016/j.molcel.2018.11.025
Helicase Subunit Cdc45 Targets the Checkpoint Kinase Rad53 to Both Replication Initiation and Elongation Complexes after Fork Stalling
Cited by: 24
Author(s): Geylani Can, Anastasia Christine Kauerhof, Dominik Macak, Philip Zegerman
Software Mentions: 1
Published: almost 6 years ago
10.3389/fcimb.2020.595709
Prophage-Related Gene VpaChn25_0724 Contributes to Cell Membrane Integrity and Growth of Vibrio parahaemolyticus CHN25
Cited by: 16
Author(s): Lianzhi Yang, Yaping Wang, Yuhong Pan, Shuling Ren, Zhuoying Zhu, Yin‐Zhe Jin, Jizhou Yan, Xu Peng, Lanming Chen
Software Mentions: 1
Published: almost 4 years ago
10.1186/1759-8753-5-6
Whole genome sequencing in Drosophila virilis identifies Polyphemus, a recently activated Tc1-like transposon with a possible role in hybrid dysgenesis
Cited by: 15
Author(s): Justin P. Blumenstiel
Software Mentions: 1
Published: almost 11 years ago
10.1128/MRA.00871-19
Complete Coding Sequence of Andean Potato Mottle Virus from a 40-Year-Old Sample from Peru
Cited by: 1
Author(s): Ian Adams, C. E. Fribourg, Adrian Fox, Neil Boonham, R. A. C. Jones
Software Mentions: 1
Published: about 5 years ago
10.1186/s12864-015-1499-z
Novel insights into the insect trancriptome response to a natural DNA virus
Cited by: 25
Author(s): Seanna J. McTaggart, Tidbury Hannah, Stephen Bridgett, Jennie S. Garbutt, Gaganjot Kaur, Mike Boots
Software Mentions: 1
Published: over 9 years ago
10.3389/fncel.2021.605030
Gene Expression Profiles of Human Cerebral Organoids Identify PPAR Pathway and PKM2 as Key Markers for Oxygen-Glucose Deprivation and Reoxygenation
Cited by: 5
Author(s): Naoki Iwasa, Takeshi K. Matsui, Naohiko Iguchi, Kaoru Kinugawa, Naritaka Morikawa, Yoshihiko Sakaguchi, T. Shiota, Shinko Kobashigawa, Mari Nakanishi, Masaya Matsubayashi, Riko Nagata, Satoru Kikuchi, Tatsuhide Tanaka, Nobuyuki Eura, Takao Kiriyama, Tohru Izumi, Kozue Saito, Hiroshi Kataoka, Yuichi Saito, Wataru Kimura, Akio Wanaka, Yuhei Nishimura, Eiichiro Mori, Kazuma Sugie
Software Mentions: 1
Published: over 3 years ago
10.1186/s12864-015-1751-6
Transcriptional analysis of susceptible and resistant European corn borer strains and their response to Cry1F protoxin
Cited by: 25
Author(s): Neetha Nanoth Vellichirammal, Haichuan Wang, Seong‐il Eyun, Etsuko N. Moriyama, Brad S. Coates, Nicholas J. Miller, Blair D. Siegfried
Software Mentions: 1
Published: over 9 years ago
10.1080/23802359.2021.1942268
Complete mitochondrial genome sequence for the Thrips hawaiiensis (Thysanoptera: Thripidae)
Cited by: 0
Author(s): Yunyu Wang, Chunying Wu, Yunying Xie, Hui Liu, Hongrui Zhang
Software Mentions: 1
Published: over 3 years ago
10.1080/23802359.2016.1219634
The complete chloroplast genome sequence of Populus davidiana Dode
Cited by: 2
Author(s): Mi Na Choi, Muho Han, Hong-Seog Park, Minyoung Kim, Jinhyun Kim, Yoon-Jeong Na, Seung-Woo Sim, Eung‐Jun Park
Software Mentions: 1
Published: almost 9 years ago
10.1080/23802359.2018.1464411
The complete mitochondrial genome of the longfin dragonfish Tactostoma macropus (Stomiiformes: Stomiidae)
Cited by: 2
Author(s): Minoru Ijichi, Tsuyoshi Takano, Masamitsu Hasegawa, Haruka Yashiki, Kazuhiro Kogure, Soichi Kojima, Susumu Yoshizawa
Software Mentions: 1
Published: over 6 years ago