pypi: Sickle | Projects | Ecosyste.ms: Papers

10.3390/jof6040272

Functional Analysis of a Novel ABL (Abnormal Browning Related to Light) Gene in Mycelial Brown Film Formation of Lentinula edodes
Cited by: 6
Author(s): Chang Pyo Hong, Suyun Moon, Seung-il Yoo, Jong-Hyun Noh, Han-Gyu Ko, Hyun A Kim, Hyeon Su Ro, Hyunwoo Cho, Jong‐Wook Chung, Hwa-Yong Lee, Hojin Ryu
Software Mentions: 1
Published: about 4 years ago

10.1128/MRA.01066-18

Complete Genome Sequence of Potato Virus T from Bolivia, Obtained from a 33-Year-Old Sample
Cited by: 4
Author(s): Ian Adams, Jorge Abad, C. E. Fribourg, Neil Boonham, R. A. C. Jones
Software Mentions: 1
Published: about 6 years ago

10.1186/s12870-017-1155-7

Transcriptomic and metabolic responses of Calotropis procera to salt and drought stress
Cited by: 28
Author(s): Mohammed Z. Mutwakil, Nahid H. Hajrah, Ahmed Atef, Sherif Edris, Mernan J. Sabir, Areej K. Al-Ghamdi, Meshaal J. Sabir, Charlotte Nelson, Rania M. Makki, Haytham A. Ali, Fotouh M. El-Domyati, Abdulrahman S. M. Al-Hajar, Yoann Gloaguen, Hassan S. Al-Zahrani, Jamal S. M. Sabir, Robert K. Jansen, Ahmed Bahieldin, Neil Hall
Software Mentions: 1
Published: almost 7 years ago

10.1128/MRA.00044-20

Draft Genome Sequence of Bacillus marisflavi CK-NBRI-03, Isolated from Agricultural Soil
Cited by: 1
Author(s): Manish Gupta, Puneet Singh Chauhan, Sudhir K. Sopory, Sneh L. Singla‐Pareek, Nidhi Adlakha, Ashwani Pareek, Charanpreet Kaur
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41598-021-94251-z

Comparative transcriptomic analysis of two Saccharopolyspora spinosa strains reveals the relationships between primary metabolism and spinosad production
Cited by: 2
Author(s): Yunpeng Zhang, Xiaomeng Liu, Tie Yin, Qi Li, Qiulong Zou, Kai Huang, Dong‐Sheng Guo, Xiaolin Zhang
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-94997-6

Antimicrobial susceptibilities and comparative whole genome analysis of two isolates of the probiotic bacterium Lactiplantibacillus plantarum, strain ATCC 202195
Cited by: 5
Author(s): Lisa G Pell, Rachael Horne, Stuart Huntley, Hafizur Rahman, Sanchita Kar, Md. Shahidul Islam, Kara Evans, Samir K. Saha, Aaron Campigotto, Shaun K. Morris, Daniel Roth, Philip M. Sherman
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-96556-5

Benchmarking laboratory processes to characterise low-biomass respiratory microbiota
Cited by: 9
Author(s): Raiza Hasrat, Jolanda Kool, Wouter A A de Steenhuijsen Piters, Mei Ling J N Chu, Sjoerd Kuiling, James Groot, Elske M van Logchem, Susana Fuentes, Eelco Franz, Debby Bogaert, Thijs Bosch
Software Mentions: 1
Published: about 3 years ago

10.1128/AEM.00162-17

Novel Sampling Method for Assessing Human-Pathogen Interactions in the Natural Environment Using Boot Socks and Citizen Scientists, with Application to Campylobacter Seasonality
Cited by: 12
Author(s): Natalia R. Jones, Caroline Millman, Mike van der Es, Miroslava Hukelova, Ken J. Forbes, Catherine Glover, Sam Haldenby, Paul R. Hunter, Kathryn A. Jackson, Sarah J. O’Brien, Dan Rigby, Norval James Colin Strachan, Nicola Williams, Iain Lake
Software Mentions: 1
Published: over 7 years ago

10.1186/s12866-020-02030-z

Genome-based characterization of two Colombian clinical Providencia rettgeri isolates co-harboring NDM-1, VIM-2, and other β-lactamases
Cited by: 10
Author(s): Adriana Piza-Buitrago, Verónica Rincón, John C Donato, Sandra Yamile Saavedra, Carolina Duarte, Jaime Morero, Laurent Falquet, María Teresa Reguero, Emiliano Barreto-Hernández
Software Mentions: 1
Published: about 4 years ago

10.1534/g3.115.021436

Heterosis Increases Fertility, Fecundity, and Survival of Laboratory-Produced F1 Hybrid Males of the Malaria Mosquito Anopheles coluzzii
Cited by: 23
Author(s): Nkiru Esther Ekechukwu, Rowida Baeshen, Sékou F. Traorè, Mamadou B. Coulibaly, Abdoulaye Diabaté, Flaminia Catteruccia, Fréderic Tripet
Software Mentions: 1
Published: almost 9 years ago

10.1128/MRA.00692-19

Draft Genome Assembly of the Entomopathogenic Bacterium Photorhabdus luminescens subsp. sonorensis Caborca
Cited by: 3
Author(s): Duy An Duong, Patricia Espinosa-Artiles, Rousel A. Orozco, István Molnár, S. Patricia Stock
Software Mentions: 1
Published: about 5 years ago

10.1128/MRA.00548-21

Complete Genome Sequence of a Bacteroides fragilis Bacteriophage, vB_BfrS_NCTC
Cited by: 0
Author(s): Mohammad Tariq, Simon R. Carding
Software Mentions: 1
Published: over 3 years ago

10.1534/g3.118.200257

Comparative Transcriptomics Among Four White Pine Species
Cited by: 30
Author(s): Ethan Alexander García Baker, Jill L. Wegrzyn, U. Uzay Sezen, Taylor Falk, Patricia E. Maloney, Detlev R. Vogler, Annette Delfino-Mix, Camille Jensen, Jeffry B. Mitton, Jessica W. Wright, Brian J. Knaus, Hardeep Rai, Richard Cronn, Daniel González-Ibeas, Hans Vasquez-Gross, Randi Famula, Jun‐Jun Liu, Lara M. Kueppers, David B. Neale
Software Mentions: 1
Published: over 6 years ago

10.1128/MRA.01442-18

Metagenomics of the Viral Community in Three Cattle Slurry Samples
Cited by: 2
Author(s): Pavelas Sazinas, Slawomir Michniewski, Branko Rihtman, Tamsin Redgwell, Aurelija Grigonyte, Amelia Brett, Bethany Guck, Rebecca H. Smith, Steven P.T. Hooton, Jon L. Hobman, Andrew Millard
Software Mentions: 1
Published: almost 6 years ago

10.1128/MRA.00201-19

Draft Genome Sequences of Two Fusobacterium necrophorum Strains Isolated from the Uterus of Dairy Cows with Metritis
Cited by: 4
Author(s): Amye M. Francis, Seong-Jeub Jeon, Federico Cunha, KwangCheol Casey Jeong, Klibs N. Galvão
Software Mentions: 1
Published: over 5 years ago

10.1128/MRA.00245-20

Draft Genome Sequence of a Clostridioides difficile Sequence Type 97 Strain Belonging to Hypervirulent Clade 2
Cited by: 2
Author(s): Yukino Usui, Yoko Nukui, Ryuji Koike, Shuji Tohda, Ryoichi Saito
Software Mentions: 1
Published: over 4 years ago

10.1534/g3.119.400966

Genome-Wide Changes in Genetic Diversity in a Population of Myotis lucifugus Affected by White-Nose Syndrome
Cited by: 9
Author(s): Thomas M. Lilley, Ian Wilson, Kenneth A. Field, DeeAnn M. Reeder, Megan E. Vodzak, Gregory G. Turner, Allen Kurta, Anna Blomberg, Samantha Hoff, Carl Herzog, Brent J. Sewall, Steve Paterson
Software Mentions: 1
Published: over 4 years ago

10.1128/MRA.00169-19

Draft Genome Sequence of Agarivorans sp. Strain Toyoura001, Isolated from an Abalone Gut
Cited by: 4
Author(s): Hideomi Itoh, Kimiko Kawano, Minoru Kihara
Software Mentions: 1
Published: over 5 years ago

10.3390/genes7030010

Pseudo-Reference-Based Assembly of Vertebrate Transcriptomes
Cited by: 1
Author(s): Kyoungwoo Nam, Heesu Jeong, Jin Wu Nam
Software Mentions: 1
Published: over 8 years ago

10.3390/genes7070035

Transcriptomic Analysis of the Endangered Neritid Species Clithon retropictus: De Novo Assembly, Functional Annotation, and Marker Discovery
Cited by: 13
Author(s): So Young Park, Bharat Bhusan Patnaik, Se Won Kang, Hyeon‐Jong Hwang, Jong Min Chung, Dae Kwon Song, Miao Sang, Hongray Howrelia Patnaik, Jae Bong Lee, Mi Young Noh, Changmu Kim, Soonok Kim, Hong Seog Park, Yong Seok Lee, Yeon Soo Han, Yong Seok Lee
Software Mentions: 1
Published: over 8 years ago

10.1128/MRA.00879-19

Whole-Genome Sequence of High-Risk Clone Sequence Type 111 of Pseudomonas aeruginosa Strain NUBRI-P, Isolated from a Wounded Sudanese Patient
Cited by: 1
Author(s): Sofia B. Mohamed, Sumaya Kambal, Abdalla Munir, Nusiba I. Abdalla, Ahmed Hamad, Sara E. Mohammed, Fatima E. Ahmed, Omnia Hamid, Mohamed M. Hassan, Arshad Ismail, Mushal Allam
Software Mentions: 1
Published: about 5 years ago

10.3390/genes9040199

Alteration of Hepatic Gene Expression along with the Inherited Phenotype of Acquired Fatty Liver in Chicken
Cited by: 28
Author(s): Yonghong Zhang, Zhen Liu, Ranran Liu, Jie Wang, Maiqing Zheng, Qinghe Li, Huanxian Cui, Guiping Zhao, Jie Wen
Software Mentions: 1
Published: over 6 years ago

10.3390/genes10090688

Genomic Analysis of γ-Hexachlorocyclohexane-Degrading Sphingopyxis lindanitolerans WS5A3p Strain in the Context of the Pangenome of Sphingopyxis
Cited by: 13
Author(s): Michał A. Kaminski, Adam Sobczak, Andrzej Dziembowski, Leszek Lipiński
Software Mentions: 1
Published: about 5 years ago

10.3390/genes10100748

Comparative Analysis of Fecal Microbiota Composition Between Rheumatoid Arthritis and Osteoarthritis Patients
Cited by: 57
Author(s): Jin Young Lee, Mohamed Mannaa, Yun-Kyung Kim, Jehun Kim, Geun-Tae Kim, Young-Su Seo
Software Mentions: 1
Published: about 5 years ago

10.3390/genes11070732

Detection of Novel QTLs for Late Blight Resistance Derived from the Wild Potato Species Solanum microdontum and Solanum pampasense
Cited by: 9
Author(s): Fergus Meade, R.C.B. Hutten, Silke Wagener, Vanessa Prigge, Emmet Dalton, Hanne Grethe Kirk, Denis Griffin, Dan Milbourne
Software Mentions: 1
Published: over 4 years ago

10.7150/thno.41534

Low-dose interleukin-2 alleviates dextran sodium sulfate-induced colitis in mice by recovering intestinal integrity and inhibiting AKT-dependent pathways
Cited by: 29
Author(s): Hana Lee, Ye Seul Son, Mi Ok Lee, Jea Woon Ryu, Kunhyang Park, Ohman Kwon, Kwang Bo Jung, Kwang‐Ho Kim, Tae Young Ryu, Areum Baek, Jang Hwan Kim, Cho Rok Jung, Choong-Min Ryu, Young-Jun Park, Tian Han, Dae Soo Kim, Hyun Soo Cho, Mi‐Young Son
Software Mentions: 1
Published: almost 5 years ago

10.1128/mBio.01969-16

The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis
Cited by: 17
Author(s): Matthew R. Olm, Cristina N. Butterfield, Alex Copeland, T. Christian Boles, Brian C. Thomas, Jillian F. Banfield
Software Mentions: 1
Published: over 7 years ago

10.1186/s12866-018-1191-y

Bacillus safensis FO-36b and Bacillus pumilus SAFR-032: a whole genome comparison of two spacecraft assembly facility isolates
Cited by: 12
Author(s): Madhan R. Tirumalai, В. П. Степанов, Andrea Wünsche, Saied Montazari, Racquel O. Gonzalez, K. Venkateswaran, George E. Fox
Software Mentions: 1
Published: over 6 years ago

10.1590/1678-4685-GMB-2020-0172

Genomic sequencing of different sequevars of Ralstonia solanacearum belonging to the Moko ecotype
Cited by: 4
Author(s): Ana Karolina Leite Pais, Jéssica Rodrigues da Silva, Leandro Victor Silva dos Santos, Greecy Mirian Rodrigues Albuquerque, Antônio Roberto Gomes de Farias, Wilson José Silva, Valdir de Queiroz Balbino, Adriano Márcio Freire Silva, Marco Aurélio Siqueira da Gama, Elineide Barbosa de Souza
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12711-018-0380-3

Early and late feathering in turkey and chicken: same gene but different mutations
Cited by: 9
Author(s): Martijn F.L. Derks, J.M. Herrero-Medrano, R.P.M.A. Crooijmans, Addie Vereijken, Julie A. Long, Hendrik Jan Megens, Martien A. M. Groenen
Software Mentions: 1
Published: over 6 years ago

10.1128/mBio.02575-19

Fluconazole Monotherapy Is a Suboptimal Option for Initial Treatment of Cryptococcal Meningitis Because of Emergence of Resistance
Cited by: 39
Author(s): William Hope, Neil Stone, Adam Johnson, Laura McEntee, Nicola Farrington, Anahi Santoro-Castelazo, Xuan Li, Anita Lucaci, Margaret Hughes, Jason D. Oliver, Charles Giamberardino, Sayoki Mfinanga, Thomas S. Harrison, John R. Perfect, Tihana Bicanic
Software Mentions: 1
Published: almost 5 years ago

10.1128/genomeA.00617-15

Draft Genome Sequences of Escherichia coli O157:H7 Strains Rafaela_II (Clade 8) and 7.1_Anguil (Clade 6) from Cattle in Argentina
Cited by: 0
Author(s): Ariel Fernando Amadío, Natalia Amigo, Andrea Fabiana Puebla, Marisa Diana Farber, Angel Cataldi
Software Mentions: 1
Published: over 9 years ago

10.1128/genomeA.00914-15

Draft Genome Sequence of a Staphylococcus aureus Strain Isolated from a Cow with Clinical Mastitis
Cited by: 2
Author(s): Paresh Sharma, D. Peddi Reddy, Pradeep Kumar, Ramya Gadicherla, Neena George, Vasundhra Bhandari
Software Mentions: 1
Published: about 9 years ago

10.1128/genomeA.01119-15

Draft Genome Sequence of Erwinia billingiae OSU19-1, Isolated from a Pear Tree Canker
Cited by: 3
Author(s): Jeannie M. Klein, Rhett W. Bennett, Logan MacFarland, Megan E. Abranches Da Silva, Britney M. Meza-Turner, Phillip M. Dark, Mackenzie E. Frey, Dulani P. Wellappili, Aron D. Beugli, Holman J. Jue, Joshua M. Mellander, Wei Wei, Walt Ream
Software Mentions: 1
Published: about 9 years ago

10.1128/genomeA.01266-15

Draft Genome Sequences of Facultative Methylotrophs, Gemmobacter sp. Strain LW1 and Mesorhizobium sp. Strain 1M-11, Isolated from Movile Cave, Romania
Cited by: 5
Author(s): Deepak Kumaresan, Daniela Wischer, Alexandra Hillebrand-Voiculescu, J. Colin Murrell
Software Mentions: 1
Published: almost 9 years ago

10.1128/genomeA.01364-15

Draft Genome Sequences of 14 Escherichia coli Phages Isolated from Cattle Slurry
Cited by: 19
Author(s): Rebecca H. Smith, M. J. O’Hara, Jon L. Hobman, Andrew Millard
Software Mentions: 1
Published: almost 9 years ago

10.1128/genomeA.01617-15

Draft Genome Sequence of Marinobacter sp. Strain P4B1, an Electrogenic Perchlorate-Reducing Strain Isolated from a Long-Term Mixed Enrichment Culture of Marine Bacteria
Cited by: 9
Author(s): В. П. Степанов, Yeyuan Xiao, April J. Lopez, Deborah J. Roberts, George E. Fox
Software Mentions: 1
Published: over 8 years ago

10.1128/genomeA.00019-16

Draft Genome Sequence of a Salmonella enterica subsp. enterica Serovar Gallinarum bv. Gallinarum Isolate Associated with Fowl Typhoid Outbreaks in Brazil
Cited by: 2
Author(s): Sílvia De Carli, Tiago Gräf, Fabiana Quoos Mayer, Samuel Paulo Cibulski, Fernanda Kieling Moreira Lehmann, André Salvador Kazantzi Fonseca, Nilo Ikuta, Vagner Ricardo Lunge
Software Mentions: 1
Published: over 8 years ago

10.1186/s13568-016-0182-3

Deep RNA-Seq profile reveals biodiversity, plant–microbe interactions and a large family of NBS-LRR resistance genes in walnut (Juglans regia) tissues
Cited by: 34
Author(s): Sandeep Chakraborty, Monica Britton, Pedro J. Martínez-García, Abhaya M. Dandekar
Software Mentions: 1
Published: almost 9 years ago

10.1128/genomeA.00326-16

Complete Genome Sequences of Three African Foot-and-Mouth Disease Viruses from Clinical Samples Isolated in 2009 and 2010
Cited by: 1
Author(s): Steven Van Borm, Toon Rosseel, Andy Haegeman, Mpolokang Elliot Fana, LaToya Seoke, Joseph Hyera, George Matlho, Frank Vandenbussche, Kris De Clercq
Software Mentions: 1
Published: over 8 years ago

10.1128/genomeA.00353-16

Genome Sequencing of Foot-and-Mouth Disease Virus Type O Isolate GRE/23/94
Cited by: 0
Author(s): David J. King, Nick J. Knowles, Graham Freimanis, Donald P. King
Software Mentions: 1
Published: over 8 years ago

10.1128/genomeA.00540-16

Complete Coding Sequences of One H9 and Three H7 Low-Pathogenic Influenza Viruses Circulating in Wild Birds in Belgium, 2009 to 2012
Cited by: 2
Author(s): Steven Van Borm, Toon Rosseel, Sylvie Marché, Mieke Steensels, Didier Vangeluwe, Annick Lindén, Thierry van den Berg, Bénédicte Lambrecht
Software Mentions: 1
Published: over 8 years ago

10.1186/s12866-018-1360-z

Role of phage ϕ1 in two strains of Salmonella Rissen, sensitive and resistant to phage ϕ1
Cited by: 7
Author(s): Marina Papaianni, Felice Contaldi, Andrea Fulgione, Sheridan L. Woo, Angela Casillo, Maria Michela Corsaro, Luca Marcolungo, Marzia Rossato, Massimo Delledonne, Marianna Garonzi, Domenico Iannelli, Rosanna Capparelli
Software Mentions: 1
Published: almost 6 years ago

10.1128/genomeA.01329-16

Genome Sequence of Corynebacterium pseudotuberculosis Strain XH02 Isolated from a Boer Goat in Xuanhan, China
Cited by: 3
Author(s): Zhixiong Zhou, Hexian Li, Mengsi Zhang, Zhiying Wang, Rongqiong Zhou, Shijun Hu, Xiaoxia Li, Xinyue Song, Zheng Zhu
Software Mentions: 1
Published: almost 8 years ago

10.1128/genomeA.01747-16

Draft Genome Sequence of Idiomarina sp. Strain 5.13, a Highly Stress-Resistant Bacterium Isolated from the Southwest Indian Ridge
Cited by: 3
Author(s): Rupesh Kumar Sinha, K. P. Krishnan, P. John Kurian
Software Mentions: 1
Published: over 7 years ago

10.1128/genomeA.01511-16

Draft Genome Sequences of Escherichia coli Strains Isolated at Calving from the Uterus, Vagina, Vulva, and Rectoanal Junction of a Dairy Cow That Later Developed Metritis
Cited by: 1
Author(s): Seong-Jeub Jeon, Federico Cunha, Amber Ginn, KwangCheol Casey Jeong, Klibs N. Galvão
Software Mentions: 1
Published: over 7 years ago

10.3390/antibiotics7010013

Efficacy of an Optimised Bacteriophage Cocktail to Clear Clostridium difficile in a Batch Fermentation Model
Cited by: 65
Author(s): Janet Y. Nale, Tamsin Redgwell, Andrew Millard, Martha R. J. Clokie
Software Mentions: 1
Published: almost 7 years ago

10.1128/genomeA.00116-17

Genome Sequences of Two Naphthalene-Degrading Strains of Pseudomonas balearica, Isolated from Polluted Marine Sediment and from an Oil Refinery Site
Cited by: 3
Author(s): Francisco Salvà‐Serra, Hedvig E. Jakobsson, Antonio Busquets, Margarita Gomila, Daniel Jaén‐Luchoro, Carolina Seguí, Francisco Aliaga-Lozano, Elena Garcı́a-Valdés, Jorge Lalucat, Edward R. B. Moore, Antonio Bennasar
Software Mentions: 1
Published: over 7 years ago

10.1128/genomeA.00141-17

First Complete Genome Sequence of Arracacha virus A Isolated from a 38-Year-Old Sample from Peru
Cited by: 7
Author(s): Ian Adams, Neil Boonham, R. A. C. Jones
Software Mentions: 1
Published: over 7 years ago

10.1128/genomeA.00410-17

Draft Genome Sequences of Three Mycobacterium bovis Strains Identified in Cattle and Wildlife in France
Cited by: 0
Author(s): Maxime Branger, Amandine Hauer, Lorraine Michelet, Claudine Karoui, Thierry Cochard, Krystel de Cruz, Sylvie Hénault, María Laura Boschiroli, Franck Biet
Software Mentions: 1
Published: over 7 years ago

10.1128/genomeA.00501-17

Draft Genome Sequence of Bacteriophage vB_Eco_swan01
Cited by: 4
Author(s): Slawomir Michniewski, Tamsin Redgwell, David J. Scanlan, Andrew Millard
Software Mentions: 1
Published: over 7 years ago

10.1128/genomeA.00688-17

Complete Genome Sequence of an Avian Metapneumovirus Subtype A Strain Isolated from Chicken (Gallus gallus) in Brazil
Cited by: 4
Author(s): Laís Santos Rizotto, Guilherme Pereira Scagion, Tereza Cristina Cardoso, Raphael Mausbach Simão, Leonardo Cardia Caserta, Júlia Cristina Benassi, Lara Borges Keid, Trícia M. F. de S. Oliveira, Rodrigo Martins Soares, Clarice Weis Arns, Steven Van Borm, Helena Lage Ferreira
Software Mentions: 1
Published: over 7 years ago

10.1128/genomeA.01162-17

Three Draft Genome Sequences of Vibrio coralliilyticus Strains Isolated from Bivalve Hatcheries
Cited by: 4
Author(s): Hanna Kehlet-Delgado, Gary P. Richards, Claudia C. Häse, Robert F. Mueller
Software Mentions: 1
Published: about 7 years ago

10.1128/genomeA.01534-17

Draft Genome Sequence of Pseudomonas putida CA-3, a Bacterium Capable of Styrene Degradation and Medium-Chain-Length Polyhydroxyalkanoate Synthesis
Cited by: 1
Author(s): Eduardo L. Almeida, Lekha Menon Margassery, Niall O’Leary, Alan D. W. Dobson
Software Mentions: 1
Published: almost 7 years ago

10.1128/genomeA.00013-18

Genome Sequence of Corynebacterium pseudotuberculosis Strain KM01, Isolated from the Abscess of a Goat in Kunming, China
Cited by: 0
Author(s): Huafeng Gao, Yuxing Ma, Qingyong Shao, Qionghua Hong, Gen Zheng, Zhiming Li
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00295-18

Draft Genome Sequences of Four Clinical Legionella pneumophila Isolates from Ontario, Canada
Cited by: 0
Author(s): Alexander Fortuna, Ricardo Ramnarine, Aimin Li, Nahuel Fittipaldi, Christine Frantz, Gustavo V. Mallo
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00370-18

Draft Genome Sequence of Mercury-Resistant Pseudomonas putida Strain DRA525
Cited by: 5
Author(s): Kevin Drace, Stephanie Giangiuli, Claire LeSar, Adam M. Kiefer
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00411-18

Draft Genome Sequence of Staphylococcus aureus Strain HD1410, Isolated from a Persistent Nasal Carrier
Cited by: 4
Author(s): Dennis Nurjadi, Sébastien Boutin, Alexander H. Dalpke, Klaus Heeg, Philipp Zanger
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00465-18

Draft Genome Sequence of n -Alkane-Utilizing Acinetobacter sp. Strain BS1, Isolated from Ethane Oxidation Culture
Cited by: 0
Author(s): Yong-wei Yan, Panpan Zhang, Ting Zhu, Zhe‐Xue Quan
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00517-18

Draft Genome Sequence of Moorella sp. Strain Hama-1, a Novel Acetogenic Bacterium Isolated from a Thermophilic Digestion Reactor
Cited by: 4
Author(s): Jun Harada, Takeshi Yamada, Surya Giri, Masato Hamada, Masaru K. Nobu, Takashi Narihiro, Hideto Tsuji, Hiroyuki Daimon
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00538-18

Whole-Genome Sequences of Listeria monocytogenes Sequence Type 6 Isolates Associated with a Large Foodborne Outbreak in South Africa, 2017 to 2018
Cited by: 34
Author(s): Mushal Allam, Nomsa P. Tau, Shannon Lucrecia Smouse, Phillip Senzo Mtshali, Florah Mnyameni, Zamantungwa T. H. Khumalo, Arshad Ismail, Nevashan Govender, Juno Thomas, Anthony M. Smith
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00372-18

Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Typhimurium Strain WG49 and Escherichia coli Strain WG5 Used in South Africa for Phage Detection in Water Samples
Cited by: 0
Author(s): Leani Bothma, Daniel González-Ibeas, Charlotte Mienie, Cornelius Carlos Bezuidenhout, Rasheed Adeleke
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00601-18

Draft Genome Sequence of Bacillus altitudinis Lc5, a Biocontrol and Plant Growth-Promoting Endophyte Strain Isolated from Indigenous Black Rice of Manipur
Cited by: 15
Author(s): Momota Potshangbam, Dinabandhu Sahoo, Preveen Verma, Sandhya Verma, Mohan Chandra Kalita, Sarangthem Indira Devi
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00224-18

Complete Genome Sequences of a Diverse Group of 13 Propionibacterium acnes Bacteriophages Isolated from Urban Raw Sewage
Cited by: 1
Author(s): Gustavo Ybazeta, Jenna Graham, Jelena Trifković, Lyne Giroux, Mazen Saleh, Syed A. Sattar, Reza Nokhbeh
Software Mentions: 1
Published: over 6 years ago

10.1128/genomeA.00614-18

Draft Genome Sequence of Bioactive Strain Streptomyces sp. SMS_SU21, Isolated from Soil Sediment of the Sundarbans Mangrove Ecosystem
Cited by: 1
Author(s): Sohan Sengupta, Arnab Pramanik, Pijush Basak, Maitree Bhattacharyya
Software Mentions: 1
Published: over 6 years ago

10.1186/gb-2013-14-11-r128

Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum
Cited by: 129
Author(s): Evelien M. Bunnik, Duk-Won D. Chung, Michael Hamilton, Nadia Ponts, Anita Saraf, Jacques Prudhomme, Laurence Florens, Karine G. Le Roch
Software Mentions: 1
Published: almost 12 years ago

10.1128/MRA.00019-21

Complete Genome Sequence of Kaistia sp. Strain 32K, Isolated from Soil as a Mixed Single Colony with Methylobacterium sp. Strain ME121
Cited by: 1
Author(s): Masahiro Ito, Tetsu Shimizu, Akira Nakamura
Software Mentions: 1
Published: over 3 years ago

10.1128/mSphere.00300-17

Lignocellulose-Degrading Microbial Communities in Landfill Sites Represent a Repository of Unexplored Biomass-Degrading Diversity
Cited by: 41
Author(s): Emma Ransom-Jones, Alan J. McCarthy, Sam Haldenby, James Doonan, James E. McDonald
Software Mentions: 1
Published: about 7 years ago

10.1128/MRA.00402-19

Draft Genome Sequences of Helcococcus ovis Strains Isolated at Time of Metritis Diagnosis from the Uterus of Holstein Dairy Cows
Cited by: 4
Author(s): Federico Cunha, Seong-Jeub Jeon, Peter Kutzer, KwangCheol Casey Jeong, Klibs N. Galvão
Software Mentions: 1
Published: over 5 years ago

10.1128/MRA.01487-19

Complete High-Quality Genome Sequence of Clostridium limosum (Hathewaya limosa) Isolate 14S0207, Recovered from a Cow with Suspected Blackleg in Germany
Cited by: 0
Author(s): Prasad Thomas, Mostafa Y. Abdel-Glil, Anne Busch, Lothar H. Wieler, Inga Eichhorn, Anne Bodenthin-Drauschke, Heinrich Neubauer, Christian Seyboldt
Software Mentions: 1
Published: almost 5 years ago

10.1128/MRA.00479-19

High-Quality Draft Genome Sequence and Annotation of the Basidiomycete Yeast Sporisorium graminicola CBS10092, a Producer of Mannosylerythritol Lipids
Cited by: 6
Author(s): Stefany Solano-González, Alistair C. Darby, D. Cossar, Mark X. Caddick
Software Mentions: 1
Published: about 5 years ago

10.3390/antibiotics9050246

A Retrospective Whole-Genome Sequencing Analysis of Carbapenem and Colistin-Resistant Klebsiella pneumoniae Nosocomial Strains Isolated during an MDR Surveillance Program
Cited by: 11
Author(s): Bernardina Gentile, Antonella Grottola, Gabriella Orlando, Giulia Fregni Serpini, Claudia Venturelli, Marianna Meschiari, Anna Anselmo, Silvia Fillo, Antonella Fortunato, Florigio Lista, Monica Pecorari, Cristina Mussini
Software Mentions: 1
Published: over 4 years ago

10.1186/s12916-015-0483-4

An accurate and affordable test for the rapid diagnosis of sickle cell disease could revolutionize the outlook for affected children born in resource-limited settings
Cited by: 18
Author(s): Thomas N. Williams
Software Mentions: 1
Published: about 9 years ago

10.1128/MRA.00041-20

Complete Genome Sequence of Burkholderia sp. Strain THE68, a Bacterial Symbiont Isolated from Midgut Crypts of the Seed Bug Togo hemipterus
Cited by: 3
Author(s): Kazutaka Takeshita, Seonghan Jang, Yoshitomo Kikuchi
Software Mentions: 1
Published: over 4 years ago

10.1128/MRA.00518-19

Draft Genome Sequences of Novel Sequence Type 3559 Carbapenem-Resistant Klebsiella pneumoniae Isolates Recovered from the Environment
Cited by: 8
Author(s): Mutshiene Deogratias Ekwanzala, Phumudzo Budeli, John Barr Dewar, Ilunga Kamika, Maggy Ndombo Benteke Momba
Software Mentions: 1
Published: over 5 years ago

10.1186/s12916-015-0473-6

Validation of a novel point of care testing device for sickle cell disease
Cited by: 75
Author(s): Julie Kanter, Marilyn J. Telen, Carolyn Hoppe, Christopher L. Roberts, Jason Kim, Xiaoxi Yang
Software Mentions: 1
Published: about 9 years ago

10.1128/MRA.01323-18

Metagenomic Sequencing of Wastewater from a South African Research Farm
Cited by: 2
Author(s): Briallen Lobb, Anthony A. Adegoke, Kesen Ma, Andrew C. Doxey, Olayinka Ayobami Aiyegoro
Software Mentions: 1
Published: about 6 years ago

10.1093/gbe/evx275

Comparative Genomics of Bacteriophage of the Genus Seuratvirus
Cited by: 20
Author(s): Pavelas Sazinas, Tamsin Redgwell, Branko Rihtman, Aurelija Grigonyte, Slawomir Michniewski, David J. Scanlan, Jon L. Hobman, Andrew Millard
Software Mentions: 1
Published: almost 7 years ago

10.1093/gbe/evy190

Convergent Plastome Evolution and Gene Loss in Holoparasitic Lennoaceae
Cited by: 19
Author(s): Adam C. Schneider, Thomas Braukmann, Arjan Banerjee, Saša Stefanović
Software Mentions: 1
Published: about 6 years ago

10.1093/gbe/evz258

Functional Genomics of a Symbiotic Community: Shared Traits in the Olive Fruit Fly Gut Microbiota
Cited by: 15
Author(s): Frances Blow, Αnastasia Gioti, Ian Goodhead, Maria Kalyva, Anastasia Kampouraki, John Vontas, Alistair C. Darby
Software Mentions: 1
Published: almost 5 years ago

10.3390/antibiotics9120874

Metagenomic Analysis Reveals the Mechanism for the Observed Increase in Antibacterial Activity of Penicillin against Uncultured Bacteria Candidatus Liberibacter asiaticus Relative to Oxytetracycline in Planta
Cited by: 4
Author(s): Chuanyu Yang, Hanqing Hu, Yihong Wu, Xiong-jie Lin, Goucheng Fan, Yongping Duan, Charles A. Powell, Veronica Ancona, Muqing Zhang
Software Mentions: 1
Published: almost 4 years ago

10.1128/MRA.01250-20

Complete Genome Sequence of Sphingobium barthaii KK22, a High-Molecular-Weight Polycyclic Aromatic Hydrocarbon-Degrading Soil Bacterium
Cited by: 6
Author(s): Jiro F. Mori, Robert A. Kanaly
Software Mentions: 1
Published: almost 4 years ago

10.3390/antibiotics9040200

Investigating Bacteriophages Targeting the Opportunistic Pathogen Acinetobacter baumannii
Cited by: 23
Author(s): Kathryn M. Styles, Rapee Thummeepak, Udomluk Leungtongkam, Sophie E Smith, Gabrielle S Christie, Andrew Millard, John Moat, Christopher G. Dowson, Elizabeth M. H. Wellington, Sutthirat Sitthisak, Antonia P. Sagona
Software Mentions: 1
Published: over 4 years ago

10.1093/gigascience/giy063

A reference genome of the European beech (Fagus sylvatica L.)
Cited by: 49
Author(s): Bagdevi Mishra, Deepak Kumar Gupta, Markus Pfenninger, Thomas Hickler, Ewald Langer, Bora Nam, Juraj Paule, Rahul Sharma, Bartosz Ulaszewski, Joanna Warmbier, Jarosław Burczyk, Marco Thines
Software Mentions: 1
Published: over 6 years ago

10.1186/s12879-021-05905-2

Increased acquired protease inhibitor drug resistance mutations in minor HIV-1 quasispecies from infected patients suspected of failing on national second-line therapy in South Africa
Cited by: 4
Author(s): Adetayo Emmanuel Obasa, Anoop T. Ambikan, Soham Gupta, Ujjwal Neogi, Graeme Brendon Jacobs
Software Mentions: 1
Published: over 3 years ago

10.1128/MRA.01254-19

Draft Genome Sequence of Pseudoalteromonas sp. Strain A25, a Bacterium with Algicidal Activity against Diatoms
Cited by: 0
Author(s): Hirotaka Kitaguchi, Nanase Masu, Keiko Fujii, Atsushi Mitsutani
Software Mentions: 1
Published: about 5 years ago

10.1128/MRA.00963-20

Draft Genome Sequence of a Potential Commercial Biocellulose Producer, Strain Komagataeibacter europaeus GH1
Cited by: 1
Author(s): Gulden Nagmetova, Kalysh Berdimuratova, Asylulan Amirgazin, Vladislav Shevtsov, Aisulu Ismailova, Yerlan Ramankulov, Alexandr Shevtsov, A.A. Kurmanbayev
Software Mentions: 1
Published: about 4 years ago

10.1128/MRA.01000-19

Draft Genome Sequence of Kosakonia radicincitans UYSO10, an Endophytic Plant Growth-Promoting Bacterium of Sugarcane ( Saccharum officinarum )
Cited by: 8
Author(s): Martín Beracochea, Cecilia Taulé, Federico Battistoni
Software Mentions: 1
Published: about 5 years ago

10.1080/19490976.2021.1884517

YjbH mediates the oxidative stress response and infection by regulating SpxA1 and the phosphoenolpyruvate-carbohydrate phosphotransferase system (PTS) in Listeria monocytogenes
Cited by: 4
Author(s): Cheng Cui, Xiao Han, Jiali Xu, Jing Sun, Kang Li, Yue Han, Mianmian Chen, Houhui Song
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41438-020-0272-x

Investigation of the transcriptomic and metabolic changes associated with superficial scald physiology impaired by lovastatin and 1-methylcyclopropene in pear fruit (cv. “Blanquilla”)
Cited by: 16
Author(s): Jordi Giné-Bordonaba, Nicola Busatto, Christian Larrigaudière, Violeta Lindo-García, Gemma Echeverría, Urška Vrhovšek, Brian Farneti, Franco Biasioli, Concetta De Quattro, Marzia Rossato, Massimo Delledonne, Fabrizio Costa
Software Mentions: 1
Published: over 4 years ago

10.1128/mSystems.00027-15

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton
Cited by: 29
Author(s): Samuel Bryson, Zhou Li, Jennifer Pett‐Ridge, Robert L. Hettich, Xavier Mayali, Chongle Pan, Robert F. Mueller
Software Mentions: 1
Published: over 8 years ago

10.1128/mSystems.00063-17

Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes
Cited by: 118
Author(s): Matthew L. Jenior, Jhansi L. Leslie, Vincent B. Young, Patrick D. Schloss
Software Mentions: 1
Published: about 7 years ago

10.1001/jamanetworkopen.2021.24938

Surveillance for Colonization, Transmission, and Infection With Methicillin-Susceptible Staphylococcus aureus in a Neonatal Intensive Care Unit
Cited by: 16
Author(s): Dennis Nurjadi, Vanessa Eichel, Patrik Tabatabai, Sabrina Klein, Nico T. Mutters, Johannes Pöschl, Philipp Zanger, Klaus Heeg, Sébastien Boutin
Software Mentions: 1
Published: about 3 years ago

10.1074/jbc.M117.809053

MicroRNA-155 induction via TNF-α and IFN-γ suppresses expression of programmed death ligand-1 (PD-L1) in human primary cells
Cited by: 98
Author(s): Daniel Yee, Kunal M. Shah, Mark Coles, Tyson V. Sharp, Dimitrios Lagos
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12879-017-2760-7

Whole genome sequencing for the molecular characterization of carbapenem-resistant Klebsiella pneumoniae strains isolated at the Italian ASST Fatebenefratelli Sacco Hospital, 2012–2014
Cited by: 33
Author(s): Sara Giordana Rimoldi, Bernardina Gentile, Cristina Pagani, Annamaria Di Gregorio, Anna Anselmo, Anna Maria Palozzi, Antonella Fortunato, Valentina Pittiglio, Anna Lisa Ridolfo, Maria Rita Gismondo, Giuliano Rizzardini, Florigio Lista
Software Mentions: 1
Published: about 7 years ago

10.1128/mSystems.00025-18

Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses
Cited by: 53
Author(s): Evelien M. Adriaenssens, Kata Farkas, Charlotte Harrison, Davey L. Jones, Heather E. Allison, Alan J. McCarthy
Software Mentions: 1
Published: over 6 years ago

10.1093/jxb/erx240

Rapid mapping and cloning of the virescent-1 gene in cotton by bulked segregant analysis–next generation sequencing and virus-induced gene silencing strategies
Cited by: 40
Author(s): Jiankun Zhu, Jiedan Chen, Fengkai Gao, Chenyu Xu, Huaitong Wu, Kun Chen, Zhanfeng Si, Yan Hu, Tianzhen Zhang
Software Mentions: 1
Published: over 7 years ago

10.1093/jxb/ery093

Mutation of SELF-PRUNING homologs in cotton promotes short-branching plant architecture
Cited by: 41
Author(s): Zhanfeng Si, Hui Liu, Jiankun Zhu, Jiedan Chen, Qiong Wang, Lei Fang, Fengkai Gao, Yue Tian, Yali Chen, Liming Chang, Bingliang Liu, Zegang Han, Baoliang Zhou, Yan Hu, Xianzhong Huang, Tianzhen Zhang
Software Mentions: 1
Published: over 6 years ago

10.1128/MRA.01295-19

16S rRNA Gene Amplicon Sequencing of Microbiota in Polybutylene Succinate Adipate-Packed Denitrification Reactors Used for Water Treatment of Land-Based Recirculating Aquaculture Systems
Cited by: 4
Author(s): Takeshi Yamada, Masato Hamada, Miku Nakagawa, Nobukazu Sato, Akinori Ando, Jun Ogawa, Masato Yasuda, Tomoki Kawagishi
Software Mentions: 1
Published: about 5 years ago

10.1128/MRA.01043-19

Draft Genome Sequences of Bacteroides pyogenes Strains Isolated from the Uterus of Holstein Dairy Cows with Metritis
Cited by: 1
Author(s): Federico Cunha, Seong-Jeub Jeon, KwangCheol Casey Jeong, Klibs N. Galvão
Software Mentions: 1
Published: about 5 years ago

Projects: pypi: Sickle

Papers Mentioning Sickle 740