Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Sickle

https://packages.ecosyste.ms/registries/pypi.org/packages/Sickle

A lightweight OAI client library for Python
11 versions
Latest release: over 4 years ago
8 dependent packages
8,030 downloads last month

Papers Mentioning Sickle 740

10.1038/s41598-020-60761-5
TREM-1 activation is a potential key regulator in driving severe pathogenesis of enterovirus A71 infection
Cited by: 10
Author(s): Siti Naqiah Amrun, Jeslin J. L. Tan, Natasha Y. Rickett, Jonathan Cox, Bernett Lee, Michael J. Griffiths, Tom Solomon, David Perera, Mong How Ooi, Julian A. Hiscox, Lisa F. P. Ng
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-68249-y
Complete genome sequences of Streptococcus pyogenes type strain reveal 100%-match between PacBio-solo and Illumina-Oxford Nanopore hybrid assemblies
Cited by: 2
Author(s): Francisco Salvà‐Serra, Daniel Jaén‐Luchoro, Hedvig E. Jakobsson, Lucia Gonzales-Silès, Roger Karlsson, Antonio Busquets, Margarita Gomila, Antonio Bennasar, Julie E. Russell, Mohammed Abbas Fazal, Sarah Alexander, Edward R. B. Moore
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-74085-x
Genetic analysis of the molecular regulation of electric fields-guided glia migration
Cited by: 2
Author(s): Li Yao, Teresa D. Shippy, Yongchao Li
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-020-76204-0
An unusual microbiome characterises a spatially-aggressive crustose alga rapidly overgrowing shallow Caribbean reefs
Cited by: 7
Author(s): Bryan Wilson, Chen‐Ming Fan, Peter J. Edmunds
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-78630-6
DNA metabarcoding of fungal diversity in air and snow of Livingston Island, South Shetland Islands, Antarctica
Cited by: 23
Author(s): Luiz Henrique Rosa, Otávio Henrique Bezerra Pinto, Tina Šantl-Temkiv, Peter Convey, Micheline Carvalho‐Silva, Carlos A. Rosa, Paulo Eduardo Aguiar Saraiva Câmara
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-020-80236-x
Metabarcoding profiling of microbial diversity associated with trout fish farming
Cited by: 11
Author(s): Mohamed A. A. Mahmoud, Mahmoud Magdy
Software Mentions: 2
Published: almost 4 years ago
10.1038/s41598-021-85927-7
Genome-wide identification of MIKC-type genes related to stamen and gynoecium development in Liriodendron
Cited by: 3
Author(s): Huanhuan Liu, Lixia Yang, Zhonghua Tu, Shenghua Zhu, Chengge Zhang, Huogen Li
Software Mentions: 2
Published: over 3 years ago
10.1038/s41598-021-91812-0
Cholesterol-dependent transcriptome remodeling reveals new insight into the contribution of cholesterol to Mycobacterium tuberculosis pathogenesis
Cited by: 14
Author(s): Jakub Pawełczyk, Anna Brzostek, Alina Minias, Przemysław Płociński, Anna Rumijowska-Galewicz, Dominik Strapagiel, Jolanta Zakrzewska‐Czerwińska, Jarosław Dziadek
Software Mentions: 2
Published: over 3 years ago
10.1186/1751-0473-9-8
Software for pre-processing Illumina next-generation sequencing short read sequences
Cited by: 169
Author(s): Chuming Chen, Sari Khaleel, Hongzhan Huang, Cathy H. Wu
Software Mentions: 2
Published: over 10 years ago
10.1128/mBio.01768-20
Pervasive Effects of <i>Wolbachia</i> on Host Temperature Preference
Cited by: 39
Author(s): Michael T. J. Hague, Chelsey N. Caldwell, Brandon S. Cooper
Software Mentions: 2
Published: about 4 years ago
10.1128/mBio.00350-21
Casting Light on the Adaptation Mechanisms and Evolutionary History of the Widespread Sumerlaeota
Cited by: 10
Author(s): Yun Fang, Yang Yuan, Jun Liu, Geng Wu, Jian Yang, Zheng-Shuang Hua, Jibin Han, Xiying Zhang, Wenjun Li, Hongchen Jiang
Software Mentions: 2
Published: over 3 years ago
10.1128/mSphereDirect.00325-17
Deep Sequencing of RNA from Blood and Oral Swab Samples Reveals the Presence of Nucleic Acid from a Number of Pathogens in Patients with Acute Ebola Virus Disease and Is Consistent with Bacterial Translocation across the Gut
Cited by: 27
Author(s): Miles W. Carroll, Sam Haldenby, Natasha Y. Rickett, Bernadett Pályi, Isabel García-Dorival, Xuan Li, Gary Barker, Joseph Akoi Boré, Fara Raymond Koundouno, E. Diane Williamson, Thomas R. Laws, Romy Kerber, Daouda Sissoko, Nóra Magyar, Antonino Di, Mirella Biava, Tom Fletcher, Armand Sprecher, Lisa F. P. Ng, Laurent Rénia, N’Faly Magassouba, Stephan Günther, Roman Wölfel, Kilian Stoecker, David A. Matthews, Julian A. Hiscox
Software Mentions: 2
Published: about 7 years ago
10.1128/mSphere.00346-18
Widespread Antibiotic, Biocide, and Metal Resistance in Microbial Communities Inhabiting a Municipal Waste Environment and Anthropogenically Impacted River
Cited by: 11
Author(s): Aneisha M. Collins-Fairclough, Rebecca Co, Melessa C. Ellis, Laura A. Hug
Software Mentions: 2
Published: about 6 years ago
10.1128/mSphere.00685-19
Weak Acid Resistance A (WarA), a Novel Transcription Factor Required for Regulation of Weak-Acid Resistance and Spore-Spore Heterogeneity in Aspergillus niger
Cited by: 12
Author(s): Ivey A. Geoghegan, Malcolm Stratford, Michael Bromley, David B. Archer, Simon V. Avery
Software Mentions: 2
Published: over 4 years ago
10.1128/mSystems.00221-18
Metatranscriptomic and Thermodynamic Insights into Medium-Chain Fatty Acid Production Using an Anaerobic Microbiome
Cited by: 58
Author(s): Matthew Scarborough, Christopher E. Lawson, Joshua J. Hamilton, Timothy J. Donohue, Daniel R. Noguera
Software Mentions: 2
Published: about 6 years ago
10.1128/mSystems.00639-19
Racial Differences in the Oral Microbiome: Data from Low-Income Populations of African Ancestry and European Ancestry
Cited by: 28
Author(s): Yaohua Yang, Zheng Wang, Qiuyin Cai, Martha J. Shrubsole, Zhiheng Pei, Robert M. Brucker, Mark Steinwandel, Seth R. Bordenstein, Zhigang Li, William J. Blot, Xiao‐Ou Shu, Jirong Long
Software Mentions: 2
Published: almost 5 years ago
10.1128/mSystems.00320-19
Uncovering the Diversity and Activity of Methylotrophic Methanogens in Freshwater Wetland Soils
Cited by: 26
Author(s): Adrienne B. Narrowe, Mikayla A. Borton, David Hoyt, Garrett J. Smith, Rebecca A. Daly, Jordan C. Angle, Elizabeth K. Eder, Allison R. Wong, Richard A. Wolfe, Alexandra Pappas, Gil Bohrer, Christopher S. Miller, Kelly Wrighton
Software Mentions: 2
Published: almost 5 years ago
10.1128/mSystems.00795-19
Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of <i>Hydrothermarchaeota</i> in Hydrothermal Sediment
Cited by: 70
Author(s): Zhichao Zhou, Yang Liu, Wei Xü, Jie Pan, Zengwei Luo, Meng Li
Software Mentions: 2
Published: almost 5 years ago
10.1038/s41396-019-0415-y
Insights into ecological role of a new deltaproteobacterial order Candidatus Acidulodesulfobacterales by metagenomics and metatranscriptomics
Cited by: 101
Author(s): Sha Tan, Jun Liu, Yun Fang, Brian P. Hedlund, Zheng‐Han Lian, Liying Huang, Jintian Li, Li-Nan Huang, Wenjun Li, Hongchen Jiang, Hailiang Dong, Wen‐Sheng Shu
Software Mentions: 2
Published: over 5 years ago
10.1038/s41396-017-0002-z
Metabolic versatility of small archaea Micrarchaeota and Parvarchaeota
Cited by: 82
Author(s): Lin-Xing Chen, Celia Méndez–García, Nina Dombrowski, Luis E. Servín-Garcidueñas, Emiley A. Eloe‐Fadrosh, Fang Bao, Zhen Luo, Sha Tan, Xiao Zhi, Zheng-Shuang Hua, Esperanza Martı́nez-Romero, Tanja Woyke, Li Huang, Jesús Sánchez, A Peláez, Manuel Ferrer, Brett J. Baker, W. S. Shu
Software Mentions: 2
Published: almost 7 years ago
10.1038/ismej.2017.170
Microbiome and infectivity studies reveal complex polyspecies tree disease in Acute Oak Decline
Cited by: 65
Author(s): Sandra Denman, James Doonan, Emma Ransom-Jones, Martin Broberg, Sarah J. Plummer, Susan Kirk, Kelly Scarlett, Andrew R Griffiths, Maciej Kaczmarek, Jack Forster, Andrew Peace, Peter N. Golyshin, Francis Hassard, Nigel L. Brown, John Kenny, James E. McDonald
Software Mentions: 2
Published: about 7 years ago
10.7554/eLife.35073
BRG1 governs glucocorticoid receptor interactions with chromatin and pioneer factors across the genome
Cited by: 52
Author(s): Jackson A. Hoffman, Kevin W. Trotter, James M. Ward, Trevor Archer
Software Mentions: 2
Published: over 6 years ago
10.3390/ijms17091416
Detection of Natural Resistance-Associated Substitutions by Ion Semiconductor Technology in HCV1b Positive, Direct-Acting Antiviral Agents-Naïve Patients
Cited by: 12
Author(s): Nadia Marascio, Grazia Pavia, Alessio Strazzulla, Tim Dierckx, Lize Cuypers, Bram Vrancken, Giorgio Settimo Barreca, Teresa Mirante, Donatella Malanga, Duarte Mendes Oliveira, Anne‐Mieke Vandamme, Carlo Torti, Maria Carla Liberto, Alfredo Focà
Software Mentions: 2
Published: about 8 years ago
10.3390/ijms21093257
Over-Expressing TaSPA-B Reduces Prolamin and Starch Accumulation in Wheat (Triticum aestivum L.) Grains
Cited by: 14
Author(s): Dandan Guo, Qiling Hou, Runqi Zhang, Hongyao Lou, Yinghui Li, Yufeng Zhang, Minsheng You, Chaojie Xie, Rongqi Liang, Baoyun Li
Software Mentions: 2
Published: over 4 years ago
10.3390/ijms21165675
Small Non-Coding RNAome of Ageing Chondrocytes
Cited by: 19
Author(s): Panagiotis Balaskas, Jonathan A. Green, Tariq M. Haqqi, Philip Dyer, Yalda Ashraf Kharaz, Yongxiang Fang, Xuan Li, Tim J. M. Welting, Mandy J. Peffers
Software Mentions: 2
Published: over 4 years ago
10.3390/ijms22105079
Implication of a Key Region of Six Bacillus cereus Genes Involved in Siroheme Synthesis, Nitrite Reductase Production and Iron Cluster Repair in the Bacterial Response to Nitric Oxide Stress
Cited by: 3
Author(s): Constance Porrini, Cyprien Guérin, Seav-Ly Tran, Rozenn Dervyn, Pierre Nicolas, Nalini Ramarao
Software Mentions: 2
Published: over 3 years ago
10.3390/ijms22189729
CD146 Delineates an Interfascicular Cell Sub-Population in Tendon That Is Recruited during Injury through Its Ligand Laminin-α4
Cited by: 12
Author(s): Neil Marr, Richard Meeson, Elizabeth F Kelly, Yongxiang Fang, Mandy J. Peffers, Andrew A. Pitsillides, Jayesh Dudhia, Chavaunne T. Thorpe
Software Mentions: 2
Published: about 3 years ago
10.18632/oncotarget.23623
Piperlongumine potentiates the effects of gemcitabine in <i>in vitro</i> and <i>in vivo</i> human pancreatic cancer models
Cited by: 21
Author(s): Jiyan Mohammad, Harsharan Dhillon, Shireen Chikara, Sujan Mamidi, Avinash Sreedasyam, Kishore Chittem, Megan Orr, John Wilkinson, Katie M. Reindl
Software Mentions: 2
Published: almost 7 years ago
10.1128/JVI.01246-17
Emergence of Double- and Triple-Gene Reassortant G1P[8] Rotaviruses Possessing a DS-1-Like Backbone after Rotavirus Vaccine Introduction in Malawi
Cited by: 52
Author(s): Khuzwayo C. Jere, Chrispin Chaguza, Naor Bar-Zeev, Jenna Lowe, Chikondi Peno, Benjamin Kumwenda, Osamu Nakagomi, Jacqueline E. Tate, Umesh D. Parashar, Robert S. Heyderman, Neil French, Nigel A. Cunliffe, Miren Iturriza‐Gómara
Software Mentions: 2
Published: almost 7 years ago
10.1128/JVI.00677-18
Low-Bias RNA Sequencing of the HIV-2 Genome from Blood Plasma
Cited by: 5
Author(s): Katherine James, Thushan I. de Silva, Katherine A. Brown, Hilton Whittle, Stephen Taylor, Gilean McVean, Joakim Esbjörnsson, Sarah Rowland‐Jones
Software Mentions: 2
Published: almost 6 years ago
10.3389/fmicb.2020.00330
A Novel “Microbial Bait” Technique for Capturing Fe(III)-Reducing Bacteria
Cited by: 3
Author(s): Babajide Milton Macaulay, Christopher Boothman, Bart E. van Dongen, Jonathan R. Lloyd
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2021.651631
A Metagenomic Insight Into the Hindgut Microbiota and Their Metabolites for Dairy Goats Fed Different Rumen Degradable Starch
Cited by: 9
Author(s): Xiaoying Han, Lei Xu, Yang Xuexin, Jing Shen, Zheng Li, Chunjia Jin, Yangchun Cao, Junhu Yao
Software Mentions: 1
Published: over 3 years ago
10.1038/s41598-020-68724-6
The complete mitochondrial genome of Indian gaur, Bos gaurus and its phylogenetic implications
Cited by: 13
Author(s): Ranganathan Kamalakkannan, Karippadakam Bhavana, Vandana R. Prabhu, Dhandapani Sureshgopi, Hijam Surachandra Singha, Muniyandi Nagarajan
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2019.02191
Diel Oscillation of Microbial Gene Transcripts Declines With Depth in Oligotrophic Ocean Waters
Cited by: 20
Author(s): Alice Vislova, Oscar A. Sosa, John M. Eppley, Anna E. Romano, Edward F. DeLong
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-020-70112-z
Entry of Panton–Valentine leukocidin-positive methicillin-resistant Staphylococcus aureus into the hospital: prevalence and population structure in Heidelberg, Germany 2015–2018
Cited by: 20
Author(s): Sabrina Klein, Julius Hannesen, Philipp Zanger, Klaus Heeg, Sébastien Boutin, Dennis Nurjadi
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2021.657379
Slow Protein Turnover Explains Limited Protein-Level Response to Diurnal Transcriptional Oscillations in Cyanobacteria
Cited by: 11
Author(s): Jan Karlsen, Johannes Asplund-Samuelsson, Michael Jahn, Dóra Vitay, Elton P. Hudson
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2017.00311
Whole Genome Sequencing for Surveillance of Antimicrobial Resistance in Actinobacillus pleuropneumoniae
Cited by: 37
Author(s): Janine T. Bossé, Yanwen Li, Jon Rogers, Roberto Fernandez Crespo, Yinghui Li, Roy R. Chaudhuri, Matthew T. G. Holden, Duncan J. Maskell, Alexander W. Tucker, Brendan W. Wren, Andrew N. Rycroft, Paul Langford
Software Mentions: 1
Published: over 7 years ago
10.1128/MRA.00181-19
Draft Genome Sequence of Thiobacimonas sp. Strain D13, a Phthalate Ester-Degrading Bacterium Isolated from Deep-Sea Sediments
Cited by: 2
Author(s): Yang Liu, Tuyan Luo, Lin Qiu, Runying Zeng
Software Mentions: 1
Published: over 5 years ago
10.1128/MRA.01057-20
Draft Genome Sequences of Lysostaphin-Resistant (K07-204) and Lysostaphin-Susceptible (K07-561) Staphylococcus aureus Sequence Type 72 Strains Isolated from Patients in South Korea
Cited by: 2
Author(s): Nayab Batool, Kwan Soo Ko, Akhilesh Kumar Chaurasia, Kyeong Kyu Kim
Software Mentions: 1
Published: almost 4 years ago
10.1128/MRA.00861-18
Draft Genome Sequence of “Candidatus Izimaplasma sp.” Strain ZiA1, Obtained from a Toluene-Degrading and Iron-Reducing Enrichment Culture
Cited by: 2
Author(s): So-Jeong Kim, Soo-Je Park, Jong-Geol Kim, Man‐Young Jung, Joo-Han Gwak, Sung‐Keun Rhee
Software Mentions: 1
Published: about 6 years ago
10.1038/s41598-020-73123-y
Genomic analysis reveals high virulence and antibiotic resistance amongst phage susceptible Acinetobacter baumannii
Cited by: 17
Author(s): Udomluk Leungtongkam, Rapee Thummeepak, Thawatchai Kitti, Kannipa Tasanapak, Jintana Wongwigkarn, Kathryn M. Styles, Elizabeth M. H. Wellington, Andrew Millard, Antonia P. Sagona, Sutthirat Sitthisak
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2019.03076
Prevalence and Molecular Characteristics of Extended-Spectrum and AmpC β-Lactamase Producing Escherichia coli in Grazing Beef Cattle
Cited by: 7
Author(s): Shin-Young Lee, Lin Teng, Nicolás DiLorenzo, Thomas A. Weppelmann, KwangCheol Casey Jeong
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2021.641484
De novo Sequencing of Novel Mycoviruses From Fusarium sambucinum: An Attempt on Direct RNA Sequencing of Viral dsRNAs
Cited by: 7
Author(s): Yukiyoshi Mizutani, Kazuma Uesaka, Ayane Ota, Matteo Calassanzio, Claudio Ratti, Takamasa Suzuki, Fumihiro Fujimori, Sotaro Chiba
Software Mentions: 1
Published: over 3 years ago
10.1098/rsob.150239
<i>Moramonas marocensis</i> gen. nov., sp. nov.: a jakobid flagellate isolated from desert soil with a bacteria-like, but bloated mitochondrial genome
Cited by: 10
Author(s): Jürgen F. H. Strassert, Denis V. Tikhonenkov, Jean‐François Pombert, Martin Kolísko, Vera Tai, Alexander P. Mylnikov, Patrick J. Keeling
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-020-72726-9
Impact of varied combinatorial mixture of non-fishmeal ingredients on growth, metabolism, immunity and gut microbiota of Lates calcarifer (Bloch, 1790) fry
Cited by: 22
Author(s): Sanjay Kumar Gupta, Ravi Fotedar, Javed Foysal, Manisha Priyam, Muhammad A.B. Siddik, Reaz Chaklader, Thi Thanh Thuy Dao, Janet Howieson
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2020.01694
Diverse Microorganisms in Sediment and Groundwater Are Implicated in Extracellular Redox Processes Based on Genomic Analysis of Bioanode Communities
Cited by: 7
Author(s): Tyler Arbour, Benjamin Gilbert, Jillian F. Banfield
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2020.572252
Microbial Life in the Deep Subsurface Aquifer Illuminated by Metagenomics
Cited by: 45
Author(s): Vitaly V. Kadnikov, Andrey V. Mardanov, Alexey V. Beletsky, О. В. Карначук, Nikolai V. Ravin
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2021.648454
Genomic Analysis of Enterococcus spp. Isolated From a Wastewater Treatment Plant and Its Associated Waters in Umgungundlovu District, South Africa
Cited by: 6
Author(s): Joshua Mbanga, Daniel G. Amoako, Akebe Luther King Abia, Mushal Allam, Arshad Ismail, Sabiha Y. Essack
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2020.584380
Dietary Inulin Supplementation Modulates Short-Chain Fatty Acid Levels and Cecum Microbiota Composition and Function in Chickens Infected With Salmonella
Cited by: 16
Author(s): Jiao Song, Qinghe Li, Nadia Everaert, Ranran Liu, Maiqing Zheng, Guiping Zhao, Jie Wen
Software Mentions: 1
Published: almost 4 years ago
10.3390/md12031419
Genomic Sequence and Experimental Tractability of a New Decapod Shrimp Model, Neocaridina denticulata
Cited by: 69
Author(s): Nathan J. Kenny, Simon Yung Wa Sin, Xin Shen, Zhe Qu, Wei Wang, Ting‐Fung Chan, Stephen S. Tobe, Sebastian M. Shimeld, Ka Hou Chu, Jerome H. L. Hui
Software Mentions: 1
Published: over 10 years ago
10.1038/s41598-020-77016-y
Predation impacts of invasive raccoons on rare native species
Cited by: 5
Author(s): Sakura Oe, Mariko Sashika, Ayako Fujimoto, Michito Shimozuru, Toshio Tsubota
Software Mentions: 1
Published: almost 4 years ago
10.3389/fmicb.2021.630345
The Relationship Between Lower Respiratory Tract Microbiome and Allergic Respiratory Tract Diseases in Children
Cited by: 5
Author(s): Jinghua Cui, Yuanyuan Zhang, Huiru Zhao, Xuemei Sun, Zhe Chen, Qun Zhang, Chao Yan, Guanhua Xue, Shaoli Li, Yanling Feng, Han Liu, Fangfang Chen, Jing Yuan
Software Mentions: 1
Published: over 3 years ago
10.1128/MRA.00398-21
Complete Genome Sequence of a Veterinary Pseudomonas aeruginosa Isolate, Pa12
Cited by: 0
Author(s): Keisuke Nakamura, Jumpei Fujiki, Takaaki Furusawa, Tomohiro Nakamura, Satoshi Gondaira, Michihito Sasaki, Masaru Usui, Hidetoshi Higuchi, Hirofumi Sawa, Yutaka Tsutsumi, Hidetomo Iwano
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2020.02094
Genomic Survey of E. coli From the Bladders of Women With and Without Lower Urinary Tract Symptoms
Cited by: 35
Author(s): Andrea Garretto, Taylor Miller-Ensminger, Adriana Ene, Zubia Merchant, Aashaka C Shah, Athina Gerodias, Anthony Biancofiori, Stacey Canchola, Stephanie Canchola, E. Carrasco Castillo, Tasnim Chowdhury, Nikita Gandhi, Sarah Hamilton, Kyla Hatton, Syed Waqar Hyder, Koty Krull, Demetrios Lagios, Thinh Lam, Kennedy Mitchell, Christine Mortensen, Amber Murphy, Joseph Richburg, Meghan Rokas, Suzanne Ryclik, Pauline Sulit, Thomas Szwajnos, Manuel Widuch, Jessica Willis, Mary Woloszyn, Bridget Brassil, Genevieve Johnson, Rita Mormando, Laura Maskeri, Mary Batrich, Nicole M. Stark, Jason W. Shapiro, Cesar Montelongo Hernandez, Swarnali Banerjee, Alan J. Wolfe, Catherine Putonti
Software Mentions: 1
Published: about 4 years ago
10.1128/MRA.01620-18
Draft Genome Sequence of Arthrobacter globiformis mrc11, an Antimicrobial Agent Isolated from a Khangkhui Cave Deposit
Cited by: 3
Author(s): Dinabandhu Sahoo, N. Jusna Devi, Ng Ngashangva, P. Momota, Y. Rojeena, Sarangthem Indira Devi
Software Mentions: 1
Published: over 5 years ago
10.1186/s12864-019-5672-7
Genetic diversity of avocado (Persea americana Mill.) germplasm using pooled sequencing
Cited by: 20
Author(s): Mor Rubinstein, Ravit Eshed, Ada Rozen, Tali Zviran, David N. Kuhn, Vered Irihimovitch, Amir Sherman, Ron Ophir
Software Mentions: 1
Published: over 5 years ago
10.3390/md19080426
Transcriptomics and Metabolomics Analyses Provide Novel Insights into Glucose-Induced Trophic Transition of the Marine Diatom Nitzschia laevis
Cited by: 3
Author(s): Xuemei Mao, Mengdie Ge, Xia Wang, Jianfeng Yu, Xiaojie Li, Bin Liu, Feng Chen
Software Mentions: 1
Published: over 3 years ago
10.1186/s12859-016-1159-6
Scalable metagenomics alignment research tool (SMART): a scalable, rapid, and complete search heuristic for the classification of metagenomic sequences from complex sequence populations
Cited by: 25
Author(s): Aaron Lee, Cecilia S. Lee, Russell N. Van Gelder
Software Mentions: 1
Published: over 8 years ago
10.1128/MRA.00679-19
Prokaryotic Community Structures in a Thermophilic Anaerobic Digestion Reactor Converting Poly( <scp>l</scp> -Lactic Acid) for a Long Period Revealed by 16S rRNA Gene Amplicon Sequencing
Cited by: 4
Author(s): Takeshi Yamada, Masato Hamada, Misaki Kurobe, Jun Harada, Surya Giri, Hideto Tsuji, Hiroyuki Daimon
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2020.607842
Integrative Analysis of Whole Genome Sequencing and Phenotypic Resistance Toward Prediction of Trimethoprim-Sulfamethoxazole Resistance in Staphylococcus aureus
Cited by: 14
Author(s): Dennis Nurjadi, Elfi Zizmann, Quan Chanthalangsy, Klaus Heeg, Sébastien Boutin
Software Mentions: 1
Published: almost 4 years ago
10.1128/MRA.00388-20
Draft Genome Sequence of Aeromonas caviae UFMG-H8, Isolated from Urine from a Healthy Bovine Heifer (Gyr Breed)
Cited by: 3
Author(s): Silvia Giannattasio-Ferraz, Laura Maskeri, André Alves de Oliveira, Edel Figueiredo Barbosa-Stancioli, Catherine Putonti
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2021.660052
Protein Family Content Uncovers Lineage Relationships and Bacterial Pathway Maintenance Mechanisms in DPANN Archaea
Cited by: 15
Author(s): Cindy J. Castelle, Raphaël Méheust, Alexander L. Jaffe, Kiley W. Seitz, Xianzhe Gong, Brett J. Baker, Jillian F. Banfield
Software Mentions: 1
Published: over 3 years ago
10.3389/fmicb.2018.03039
Metabolism and Occurrence of Methanogenic and Sulfate-Reducing Syntrophic Acetate Oxidizing Communities in Haloalkaline Environments
Cited by: 36
Author(s): Peer H. A. Timmers, Charlotte D. Vavourakis, Robbert Kleerebezem, Jaap S Sinninghe Damsté, Gerard Muyzer, Alfons Johannes Maria Stams, Dimitry Y. Sorokin, Caroline M. Plugge
Software Mentions: 1
Published: almost 6 years ago
10.1128/MRA.00542-19
Whole-Genome Sequence of Acinetobacter baumannii Strain NUBRI-A, Isolated from a Hospitalized Patient in Khartoum, Sudan
Cited by: 3
Author(s): Sofia B. Mohamed, Mohamed M. Hassan, Abdalla Munir, Sumaya Kambal, Nusiba I. Abdalla, Ahmed Hamad, Sara E. Mohammed, Fatima E. Ahmed, Omnia Hamid, Arshad Ismail, Mushal Allam
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2018.02175
Discovery of Plant Viruses From Tea Plant (Camellia sinensis (L.) O. Kuntze) by Metagenomic Sequencing
Cited by: 27
Author(s): Xinyuan Hao, Weifu Zhang, Fei Zhao, Ying Liu, Wenjun Qian, Yuchun Wang, Lu Wang, Jianming Zeng, Yajun Yang, Xinchao Wang
Software Mentions: 1
Published: about 6 years ago
10.1186/s13068-020-01718-8
Improved lipid productivity in Nannochloropsis gaditana in nitrogen-replete conditions by selection of pale green mutants
Cited by: 21
Author(s): Michela Cecchin, Silvia Berteotti, Stefania Paltrinieri, Ivano Vigliante, Barbara Iadarola, Barbara Giovannone, Massimo E. Maffei, Massimo Delledonne, Matteo Ballottari
Software Mentions: 1
Published: over 4 years ago
10.1155/2014/493825
Comprehensive Transcriptome Study to Develop Molecular Resources of the CopepodCalanus sinicusfor Their Potential Ecological Applications
Cited by: 14
Author(s): Qing Yang, Fenyong Sun, Zhi Min Yang, Hongjun Liu
Software Mentions: 1
Published: almost 11 years ago
10.3389/fmicb.2020.560942
Evaluation of Two Primer Sets for Amplification of Comammox Nitrospira amoA Genes in Wetland Soils
Cited by: 7
Author(s): Changgui Lin, Hang Xu, Wei Qin, Shaoyi Xu, Xiufeng Tang, Lu Kuang, Xinxin Wang, Bin Jiang, Junhui Chen, Jun Shan, Jonathan M. Adams, Hua Qin, Baozhan Wang
Software Mentions: 1
Published: about 4 years ago
10.1186/s12859-015-0546-8
UrQt: an efficient software for the Unsupervised Quality trimming of NGS data
Cited by: 56
Author(s): Laurent Modolo, Emmanuelle Lerat
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-020-80176-6
Changes to the cervicovaginal microbiota and cervical cytokine profile following surgery for cervical intraepithelial neoplasia
Cited by: 7
Author(s): Rina Kawahara, Takuma Fujii, Iwao Kukimoto, Hiroyuki Nomura, Rie Kawasaki, Eiji Nishio, Ryoko Ichikawa, Tetsuya Tsukamoto, Aya Iwata
Software Mentions: 1
Published: almost 4 years ago
10.1128/MRA.00921-19
Draft Genome Sequence of Brevibacillus sp. Strain LEMMJ03, Isolated from an Antarctic Volcano
Cited by: 0
Author(s): Júnia Schultz, René Kallies, Ulisses Nunes da Rocha, Alexandre Soares Rosado
Software Mentions: 1
Published: about 5 years ago
10.1002/btm2.10209
Mitochondrial transplantation therapy inhibit carbon tetrachloride‐induced liver injury through scavenging free radicals and protecting hepatocytes
Cited by: 25
Author(s): Zizhen Zhao, Yixue Hou, Wei Zhou, Rajendiran Keerthiga, Ailing Fu
Software Mentions: 1
Published: almost 4 years ago
10.1136/bmjopen-2017-018867
Prospective cohort study to investigate the burden and transmission of acute gastroenteritis in care homes: a study protocol
Cited by: 2
Author(s): Thomas Inns, Anna Puławska-Czub, Jonathan Harris, Roberto Vivancos, Jonathan M. Read, Nicholas J. Beeching, David J. Allen, Miren Iturriza‐Gómara, Sarah J. O’Brien
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2020.553109
High-Throughput Sequencing for Deciphering the Virome of Alfalfa (Medicago sativa L.)
Cited by: 20
Author(s): Nicolás Bejerman, Philippe Roumagnac, Lev G. Nemchinov
Software Mentions: 1
Published: about 4 years ago
10.1128/MRA.00552-19
First Whole-Genome Sequence of a Highly Resistant Klebsiella pneumoniae Sequence Type 14 Strain Isolated from Sudan
Cited by: 3
Author(s): Sofia B. Mohamed, Sumaya Kambal, Abdalla Munir, Nusiba I. Abdalla, Mohamed M. Hassan, Ahmed Hamad, Sara E. Mohammed, Fatima E. Ahmed, Omnia Hamid, Arshad Ismail, Mushal Allam
Software Mentions: 1
Published: over 5 years ago
10.1128/MRA.00742-19
Whole-Genome Sequence of the Ammonia-Oxidizing Bacterium Nitrosomonas stercoris Type Strain KYUHI-S, Isolated from Composted Cattle Manure
Cited by: 1
Author(s): Tatsunori Nakagawa, Y. Tsuchiya, Reiji Takahashi
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2020.00515
Radiation Tolerance of Pseudanabaena catenata, a Cyanobacterium Relevant to the First Generation Magnox Storage Pond
Cited by: 10
Author(s): Lynn Foster, Howbeer Muhamadali, Christopher Boothman, David C. Sigee, Jon K. Pittman, Royston Goodacre, Katherine Morris, Jonathan R. Lloyd
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-021-84305-7
High genomic diversity of novel phages infecting the plant pathogen Ralstonia solanacearum, isolated in Mauritius and Reunion islands
Cited by: 9
Author(s): Angélina Trotereau, Claudine Boyer, Isabelle Bornard, Max Jean Bernard Pécheur, Catherine Schouler, Clara Torres‐Barceló
Software Mentions: 1
Published: over 3 years ago
10.1002/aps3.1156
Fluidigm2 <scp>PURC</scp> : Automated processing and haplotype inference for double‐barcoded <scp>PCR</scp> amplicons
Cited by: 13
Author(s): Paul D. Blischak, Maribeth Latvis, Diego F. Morales‐Briones, Jens C Johnson, Verónica S. Di Stilio, Andrea D. Wolfe, David C. Tank
Software Mentions: 1
Published: over 6 years ago
10.3389/fmicb.2020.583378
Genome Characterization of a Novel Wastewater Bacteroides fragilis Bacteriophage (vB_BfrS_23) and its Host GB124
Cited by: 4
Author(s): Mohammad Tariq, Fiona Newberry, Rik Haagmans, Catherine Booth, Tom Wileman, Lesley Hoyles, Martha R. J. Clokie, James Ebdon, Simon R. Carding
Software Mentions: 1
Published: about 4 years ago
10.1128/MRA.01359-19
Whole-Genome Sequencing Confirms the Coexistence of Different Colonizing Group B <i>Streptococcus</i> Isolates Underscored by CRISPR Typing
Cited by: 3
Author(s): Clémence Beauruelle, Maxime Branger, Thierry Cochard, Adeline Pastuszka, Franck Biet, Philippe Lanotte
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2017.01652
Biology and Genomics of an Historic Therapeutic Escherichia coli Bacteriophage Collection
Cited by: 11
Author(s): Abiyad Baig, Joan Colom, Paul Barrow, Catherine Schouler, Arshnee Moodley, Rob Lavigne, Robert J. Atterbury
Software Mentions: 1
Published: about 7 years ago
10.3389/fmicb.2017.00435
Safety Evaluation of a Novel Strain of Bacteroides fragilis
Cited by: 22
Author(s): Ye Wang, Huimin Deng, Zhengchao Li, Yafang Tan, Yanping Han, Xiaoyi Wang, Zongmin Du, Yangyang Liu, Ruifu Yang, Yang Bai, Yujing Bi, Fachao Zhi
Software Mentions: 1
Published: over 7 years ago
10.1128/MRA.00096-19
Complete Genome Sequence of Halorubrum ezzemoulense Strain Fb21
Cited by: 2
Author(s): Yutian Feng, Artemis S. Louyakis, Andrea M. Makkay, Ray O. Guerrero, R. Thane Papke, J. Peter Gogarten
Software Mentions: 1
Published: over 5 years ago
10.3389/fonc.2020.01622
Tn Antigen Expression Contributes to an Immune Suppressive Microenvironment and Drives Tumor Growth in Colorectal Cancer
Cited by: 36
Author(s): Lenneke A. M. Cornelissen, Athanasios Blanas, Anouk Zaal, Joost C. van der Horst, Laura Kruijssen, Tom O’Toole, Yvette van Kooyk, Sandra J. van Vliet
Software Mentions: 1
Published: over 4 years ago
10.1186/s13104-018-3908-2
Detection of an amplification bias associated to Leuconostocaceae family with a universal primer routinely used for monitoring microbial community structures within food products
Cited by: 5
Author(s): Simon Poirier, Olivier Rué, Gwendoline Coeuret, Marie‐Christine Champomier‐Vergès, Valentin Loux, Stéphane Chaillou
Software Mentions: 1
Published: about 6 years ago
10.3389/fphys.2018.00381
Liver Transcriptome and miRNA Analysis of Silver Carp (Hypophthalmichthys molitrix) Intraperitoneally Injected With Microcystin-LR
Cited by: 17
Author(s): Xiancheng Qu, Menghong Hu, Yingxin Shang, Lisha Pan, Peixuan Jia, Chunxue Fu, Qigen Liu, Youji Wang
Software Mentions: 1
Published: over 6 years ago
10.3389/fphys.2018.00777
Sensilla Morphology and Complex Expression Pattern of Odorant Binding Proteins in the Vetch Aphid Megoura viciae (Hemiptera: Aphididae)
Cited by: 30
Author(s): Daniele Bruno, Gerarda Grossi, Rosanna Salvia, Andrea Scala, Donatella Farina, Annalisa Grimaldi, Jing‐Jiang Zhou, Sabino Aurelio Bufo, Heiko Vogel, Ewald Grosse‐Wilde, Bill S. Hansson, Patrizia Falabella
Software Mentions: 1
Published: over 6 years ago
10.3389/fphys.2020.01111
Expression Profiling of Plant Cell Wall-Degrading Enzyme Genes in Eucryptorrhynchus scrobiculatus Midgut
Cited by: 3
Author(s): Peng Gao, Zhenkai Liu, Junbao Wen
Software Mentions: 1
Published: about 4 years ago
10.3389/fphys.2020.01110
Hepatopancreas Transcriptome Profiling Analysis Reveals Physiological Responses to Acute Hypoxia and Reoxygenation in Juvenile Qingtian Paddy Field Carp Cyprinus carpio var qingtianensis
Cited by: 14
Author(s): Ming Qi, Qianqian Wu, Tao Liu, Yiling Hou, Yixin Miao, Menghong Hu, Qigen Liu
Software Mentions: 1
Published: about 4 years ago
10.1128/MRA.00262-21
Metagenomes, Metatranscriptomes, and Metagenome-Assembled Genomes from Chesapeake and Delaware Bay (USA) Water Samples
Cited by: 6
Author(s): Minhajuddin Ahmed, Shen Jean Lim, Barbara J. Campbell
Software Mentions: 1
Published: over 3 years ago
10.1186/s12870-020-02724-6
Loss function of SL (sekiguchi lesion) in the rice cultivar Minghui 86 leads to enhanced resistance to (hemi)biotrophic pathogens
Cited by: 15
Author(s): Dagang Tian, Fang Yang, Yuqing Niu, Yan Lin, Zaijie Chen, Gang Li, Qiong Luo, Feng Wang, Mo Wang
Software Mentions: 1
Published: about 4 years ago
10.3389/fpls.2021.756795
Suppression of Phytochrome-Interacting Factors Enhances Photoresponses of Seedlings and Delays Flowering With Increased Plant Height in Brachypodium distachyon
Cited by: 5
Author(s): Quyen T. N. Hoang, Sharanya Tripathi, Jae-Yong Cho, Da-Min Choi, Ah-Young Shin, Suk‐Yoon Kwon, Yun‐Jeong Han, Jeong-Il Kim
Software Mentions: 1
Published: about 3 years ago
10.3389/fpls.2016.01106
Shallow Whole Genome Sequencing for the Assembly of Complete Chloroplast Genome Sequence of Arachis hypogaea L.
Cited by: 12
Author(s): Sudheesh K. Prabhudas, Sowjanya Prayaga, Madasamy Parani, Purushothaman Natarajan
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2016.01961
Proso Millet (Panicum miliaceum L.) and Its Potential for Cultivation in the Pacific Northwest, U.S.: A Review
Cited by: 106
Author(s): Cedric Habiyaremye, Janet B. Matanguihan, Jade d’Alpoim Guedes, Girish M. Ganjyal, Michael R. Whiteman, K. K. Kidwell, Kevin M. Murphy
Software Mentions: 1
Published: almost 8 years ago
10.1128/MRA.01392-18
A 33-Year-Old Plant Sample Contributes the First Complete Genomic Sequence of <i>Potato Virus U</i>
Cited by: 4
Author(s): Ian Adams, Neil Boonham, R. A. C. Jones
Software Mentions: 1
Published: almost 6 years ago
10.3389/fpls.2015.00637
The origin and evolution of phototropins
Cited by: 59
Author(s): Fay‐Wei Li, Carl J. Rothfels, Michael Melkonian, Juan Carlos Villarreal, Dennis Wm. Stevenson, Sean W. Graham, Gane Ka‐Shu Wong, Sarah Mathews, Kathleen M. Pryer
Software Mentions: 1
Published: over 9 years ago
10.3389/fpls.2019.00024
RNA Sequencing Characterizes Transcriptomes Differences in Cold Response Between Northern and Southern Alternanthera philoxeroides and Highlight Adaptations Associated With Northward Expansion
Cited by: 9
Author(s): Dasheng Liu, David P. Horvath, Peng Li, Wenmin Liu
Software Mentions: 1
Published: almost 6 years ago
10.1128/MRA.01141-18
Draft Genome Sequence of <i>Escherichia</i> Phage PGN829.1, Active against Highly Drug-Resistant Uropathogenic Escherichia coli
Cited by: 5
Author(s): Naveen Chaudhary, Balvinder Mohan, Neelam Taneja
Software Mentions: 1
Published: about 6 years ago
10.1128/MRA.00528-19
Draft Genome Sequence of the Yeast <i>Pichia manshurica</i> YM63, a Participant in Secondary Fermentation of Ishizuchi-Kurocha, a Japanese Fermented Tea
Cited by: 3
Author(s): Takahito Toyotome, Miyu Yamamoto, Masanori Horie
Software Mentions: 1
Published: over 5 years ago