pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0132949

Enterococcus faecalis Glycolipids Modulate Lipoprotein-Content of the Bacterial Cell Membrane and Host Immune Response
Cited by: 8
Author(s): Christian Theilacker, Ann-Kristin Diederich, Andreas Otto, Irina G. Sava, Dominique Wobser, Yinyin Bao, Katrin Hese, Melanie Broszat, Philipp Henneke, Dörte Becher, Johannes Hüebner
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0037035

Peptide Array X-Linking (PAX): A New Peptide-Protein Identification Approach
Cited by: 16
Author(s): Hirokazu Okada, Akiyoshi Uezu, Erik J. Soderblom, M. Arthur Moseley, Frank B. Gertler, Scott H. Soderling
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0167086

An Accessory Protease Inhibitor to Increase the Yield and Quality of a Tumour-Targeting mAb in Nicotiana benthamiana Leaves
Cited by: 27
Author(s): Philippe V. Jutras, Carla Marusic, Chiara Lonoce, Carole Deflers, Marie‐Claire Goulet, Eugenio Benvenuto, Dominique Michaud, Marcello Donini
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0011380

HOIL-1L Interacting Protein (HOIP) as an NF-κB Regulating Component of the CD40 Signaling Complex
Cited by: 27
Author(s): Bruce S. Hostager, Daniel K. Fox, Douglas Whitten, Curtis G. Wilkerson, Betty A. Eipper, Victor P. Francone, Paul B. Rothman, John Colgan
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0166883

Overexpressed Proteins in Hypervirulent Clade 8 and Clade 6 Strains of Escherichia coli O157:H7 Compared to E. coli O157:H7 EDL933 Clade 3 Strain
Cited by: 12
Author(s): Natalia Amigo, Qí Zhāng, Ariel Fernando Amadío, Qun‐Jie Zhang, Wanderson Marques da Silva, Baiyuan Cui, Zhongjian Chen, Mariano Larzábal, Jinlong Bei, Angel Cataldi
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0203708

The DEAD-box RNA-binding protein DDX6 regulates parental RNA decay for cellular reprogramming to pluripotency
Cited by: 11
Author(s): Daisuke Kami, Tomoya Kitani, Akihiro Nakamura, Naoki Wakui, Ryuta Mizutani, Masahito Ohue, Fuyuki Kametani, Nobuyoshi Akimitsu, Satoshi Gojo
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0047866

Venom Proteome of the Box Jellyfish Chironex fleckeri
Cited by: 56
Author(s): Diane L. Brinkman, Ammar Aziz, Alex Loukas, Jeremy Potriquet, Jamie Seymour, Jason Mulvenna
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0115454

Did Androgen-Binding Protein Paralogs Undergo Neo- and/or Subfunctionalization as the Abp Gene Region Expanded in the Mouse Genome?
Cited by: 9
Author(s): Robert C. Karn, Amanda Chung, Christina M. Laukaitis
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0040896

First Insight into the Kinome of Human Regulatory T Cells
Cited by: 14
Author(s): Sebastian König, Michaël Probst-Kepper, Tobias Reinl, Andreas Jeron, Jochen Huehn, Burkhart Schraven, Lothar Jänsch
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0228871

Variability in protein cargo detection in technical and biological replicates of exosome-enriched extracellular vesicles
Cited by: 13
Author(s): Suma Tiruvayipati, Donald J. Wolfgeher, Yue Ming, Fangfang Duan, Jorge Andrade, Hui Jiang, Lucia Schuger
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0074502

Identification of an Intrinsic Determinant Critical for Maspin Subcellular Localization and Function
Cited by: 18
Author(s): Sijana H. Dzinic, Alexander Kaplun, Xiao Hua Li, M. Margarida Bernardo, Yan Meng, Ivory Dean, David Krass, Paul M. Stemmer, Namhee Shin, Fulvio Lonardo, Sheng Shen
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0135973

Polysomes of Trypanosoma brucei: Association with Initiation Factors and RNA-Binding Proteins
Cited by: 33
Author(s): Claudius Klein, Monica Terrao, Diana Inchaustegui Gil, Christine Clayton
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0067513

The Cardiac Acetyl-Lysine Proteome
Cited by: 82
Author(s): D. Brian Foster, Ting Liu, Jasma Rucker, Robert N. O’Meally, Lauren DeVine, Robert N. Cole, Brian O’Rourke
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0119222

Quantitative Proteomics Reveal Distinct Protein Regulations Caused by Aggregatibacter actinomycetemcomitans within Subgingival Biofilms
Cited by: 36
Author(s): Kai Bao, Nagihan Bostancı, Nathalie Selevsek, Thomas Thurnheer, Georgios N. Belibasakis
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0100426

Four Escherichia coli O157:H7 Phages: A New Bacteriophage Genus and Taxonomic Classification of T1-Like Phages
Cited by: 49
Author(s): Yan D. Niu, Tim A. McAllister, John H. E. Nash, Andrew M. Kropinski, Kim Stanford
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0077484

Cell Survival Following Radiation Exposure Requires miR-525-3p Mediated Suppression of ARRB1 and TXN1
Cited by: 17
Author(s): Anne Kraemer, Žarko Barjaktarović, Hakan Sarioglu, Klaudia Winkler, Friederike Eckardt‐Schupp, Soile Tapio, Michael J. Atkinson, Simone Moertl
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0087613

Genome-Wide Analysis of Antiviral Signature Genes in Porcine Macrophages at Different Activation Statuses
Cited by: 35
Author(s): Yongming Sang, Wyatt Brichalli, Raymond R. R. Rowland, Frank Blecha
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0071769

Cofilin Oligomer Formation Occurs In Vivo and Is Regulated by Cofilin Phosphorylation
Cited by: 24
Author(s): Pankaj Goyal, Dharmendra Pandey, Daniela Brünnert, Elke Hammer, Marek Zygmunt, Wolfgang Siess
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0231114

Drosophila MARF1 ensures proper oocyte maturation by regulating nanos expression
Cited by: 8
Author(s): Shinichi Kawaguchi, Mizuki Ueki, Toshie Kai
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0104316

Vaccine-Mediated Immune Responses to Experimental Pulmonary Cryptococcus gattii Infection in Mice
Cited by: 36
Author(s): A. K. Chaturvedi, Rumanasma S. Hameed, Karen L. Wozniak, Camaron R. Hole, Chrissy M. Leopold Wager, Susan T. Weintraub, José L. Lopez-Ribot, Floyd L. Wormley
Software Mentions: 1
Published: about 12 years ago

10.3390/cancers13174419

Defining the Tumor Microenvironment by Integration of Immunohistochemistry and Extracellular Matrix Targeted Imaging Mass Spectrometry
Cited by: 9
Author(s): Denys Rujchanarong, Julia Lefler, Janet Saunders, Sarah Pippin, Laura Spruill, Jennifer R. Bethard, Lauren E. Ball, Anand Mehta, Richard Drake, Michael C. Ostrowski, Peggi Angel
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers13071660

Malignant Pleural Mesothelioma Interactome with 364 Novel Protein-Protein Interactions
Cited by: 8
Author(s): Kalyani B. Karunakaran, Naveena Yanamala, Gregory R. Boyce, Michael J. Becich, Madhavi K. Ganapathiraju
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13184521

Protein Ligands in the Secretome of CD36+ Fibroblasts Induce Growth Suppression in a Subset of Breast Cancer Cell Lines
Cited by: 8
Author(s): Kosar Jabbari, Garrett Winkelmaier, Cody Andersen, Paul Yaswen, David R. Quilici, Saori Furuta, Qingsu Cheng, Bahram Parvin
Software Mentions: 1
Published: about 5 years ago

10.3390/cancers8030037

Proteomics Analysis Reveals Novel RASSF2 Interaction Partners
Cited by: 7
Author(s): Thibaut Barnoud, Daniel W. Wilkey, Michael L. Merchant, Jennifer A. Clark, Howard Donninger
Software Mentions: 1
Published: over 10 years ago

10.3390/cancers12102923

Uveal Melanoma-Derived Extracellular Vesicles Display Transforming Potential and Carry Protein Cargo Involved in Metastatic Niche Preparation
Cited by: 24
Author(s): Thupten Tsering, Alexander Laskaris, Mohamed Abdouh, Prisca Bustamante, Sabrina Parent, Eva Jin, Sarah Tadhg Ferrier, Goffredo Arena, Julia V. Burnier
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers11020188

Phosphorylation-Dependent Intra-Domain Interaction of the Cx37 Carboxyl-Terminus Controls Cell Survival
Cited by: 8
Author(s): Nicole L. Jacobsen, Tasha K. Pontifex, Paul Langlais, Janis M. Burt
Software Mentions: 1
Published: over 7 years ago

10.3390/cancers13020251

DNA-Damage-Induced Alternative Splicing of p53
Cited by: 9
Author(s): Jing Chen, Dadong Zhang, Xiaodi Qin, Kouros Owzar, Jennifer J. McCann, Michael B. Kastan
Software Mentions: 1
Published: over 5 years ago

10.3390/cancers13163938

Nuclear Pyruvate Kinase M2 (PKM2) Contributes to Phosphoserine Aminotransferase 1 (PSAT1)-Mediated Cell Migration in EGFR-Activated Lung Cancer Cells
Cited by: 10
Author(s): Rumeysa Biyik‐Sit, Traci Kruer, Susan Dougherty, James Bradley, Daniel W. Wilkey, Michael L. Merchant, John O. Trent, Brian F. Clem
Software Mentions: 1
Published: about 5 years ago

10.1016/j.chembiol.2018.05.013

Genetically Encoded Protein Phosphorylation in Mammalian Cells
Cited by: 45
Author(s): Václav Beránek, Christopher D. Reinkemeier, Michael S. Zhang, Alexandria Deliz Liang, Gene Kym, Jason W. Chin
Software Mentions: 1
Published: about 8 years ago

10.1186/s12964-019-0494-4

Extracellular vesicles originating from glioblastoma cells increase metalloproteinase release by astrocytes: the role of CD147 (EMMPRIN) and ionizing radiation
Cited by: 19
Author(s): Nicholas Colangelo, Edouard I. Azzam
Software Mentions: 1
Published: over 6 years ago

10.1186/s12964-019-0484-6

TRIM30 modulates Interleukin-22-regulated papillary thyroid Cancer cell migration and invasion by targeting Sox17 for K48-linked Polyubiquitination
Cited by: 4
Author(s): Wei Li, Fen Li, Weiwei Lei, Zezhang Tao
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41418-018-0079-6

Post-translational modification of OCT4 in breast cancer tumorigenesis
Cited by: 55
Author(s): Yunhee Cho, Hang Won Kang, Seok-Jun Kim, Seul Lee, Sujin Jee, Sung Gwe Ahn, Min Jueng Kang, Joon Seon Song, Joon‐Yong Chung, Eugene C. Yi, Kyung–Hee Chun
Software Mentions: 1
Published: over 8 years ago

10.1038/s41418-019-0407-5

Targeting PML in triple negative breast cancer elicits growth suppression and senescence
Cited by: 24
Author(s): Leire Arreal, Marco Piva, Sonia Fernández, Ajinkya Revandkar, Ariane Schaub-Clerigué, Josep Villanueva, Amaia Zabala-Letona, Mikel Pujana, Ianire Astobiza, Ana R. Cortazar, Ivana Heřmanová, Laura Bozal-Basterra, Amaia Arruabarrena-Aristorena, Alfons Crespo, Lorea Valcárcel-Jiménez, Patricia Zúñiga-García, Françesc Canals, Verónica Torrano, Rosa Barrio, James D. Sutherland, Andrea Alimonti, Natalia Martín-Martín, Arkaitz Carracedo
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41419-020-2493-1

Chk1-mediated phosphorylation of Cdh1 promotes the SCFβTRCP-dependent degradation of Cdh1 during S-phase and efficient cell-cycle progression
Cited by: 7
Author(s): Debjani Pal, Adrian Torres, Benjamin R. Stromberg, Abbey L. Messina, Andrew Dickson, Kuntal De, Belinda Willard, Monica Venere, Matthew K. Summers
Software Mentions: 1
Published: over 6 years ago

10.1038/cddis.2015.108

XBP1 mitigates aminoglycoside-induced endoplasmic reticulum stress and neuronal cell death
Cited by: 58
Author(s): Naoki Oishi, Stefan Duscha, Heithem Boukari, Martin Meyer, Junbo Xie, Wei Gao, Thomas Schrepfer, Bernd Roschitzki, Erik C. Boettger, Jochen Schacht
Software Mentions: 1
Published: over 11 years ago

10.1038/cddis.2015.21

Structural and biochemical changes underlying a keratoderma-like phenotype in mice lacking suprabasal AP1 transcription factor function
Cited by: 16
Author(s): Ellen A. Rorke, Gautam Adhikary, Christina A. Young, Robert H. Rice, Peter M. Elias, Debbie Crumrine, Jason M. Meyer, Miroslav Blumenberg, Richard L. Eckert
Software Mentions: 1
Published: over 11 years ago

10.1038/cddis.2015.353

Loss of serum response factor induces microRNA-mediated apoptosis in intestinal smooth muscle cells
Cited by: 16
Author(s): Chanjae H. Park, Moon Young Lee, Orazio J. Slivano, Paul J. Park, Se Eun Ha, Robyn M. Berent, Robert Fuchs, Nicholas C. Collins, Tian Yu, Syn Hannah, J. K. Park, Kotaro Horiguchi, Joseph M. Miano, Kenton M. Sanders, Seungil Ro
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41419-021-03531-z

Inhibiting β-catenin disables nucleolar functions in triple-negative breast cancer
Cited by: 9
Author(s): Shannon E. Weeks, Sarah C. Kammerud, Brandon J. Metge, Heba Allah Alsheikh, David A. Schneider, Dongquan Chen, Shi Wei, James A. Mobley, Akinyemi I. Ojesina, Lalita A. Shevde, Rajeev S. Samant
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-021-03871-w

The RNA-binding protein HuR is a novel target of Pirh2 E3 ubiquitin ligase
Cited by: 15
Author(s): Alexandra Daks, Alexey Petukhov, Olga Fedorova, Oleg Shuvalov, Alena Kizenko, Elizaveta Tananykina, Elena Vasileva, Oleg V. Semenov, Andrew R. Bottrill, Nickolai A. Barlev
Software Mentions: 1
Published: over 5 years ago

10.1038/s41419-020-2519-8

The USP10-HDAC6 axis confers cisplatin resistance in non-small cell lung cancer lacking wild-type p53
Cited by: 34
Author(s): Chen Hu, Mu Zhang, Niko Moses, Cong li Hu, Lisa Polin, Wei Chen, Hyejeong Jang, Joshua R. Heyza, Agnes Malysa, Joseph A. Caruso, Shengyan Xiang, Steve M. Patrick, Paul M. Stemmer, Zhenkun Lou, Wenlong Bai, Chuangui Wang, Gerold Bepler, Xiaohong Mary Zhang
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-018-0461-9

Stomatin-like protein 2 regulates survivin expression in non-small cell lung cancer cells through β-catenin signaling pathway
Cited by: 26
Author(s): Cheng‐Ta Yang, Jhy-Ming Li, Lifu Li, Yousang Ko, Jeng-Ting Chen
Software Mentions: 1
Published: over 8 years ago

10.1038/s41419-019-1878-5

TM4SF5-mediated CD44v8-10 splicing variant promotes survival of type II alveolar epithelial cells during idiopathic pulmonary fibrosis
Cited by: 8
Author(s): Ji Eon Kim, Hye-Jin Kim, Jae Woo Jung, Dae-Geun Song, Dasomi Park, Haesong Lee, Hyejin Um, Jinsoo Park, Seo Hee Nam, Moonjae Cho, Sang Eun Lee
Software Mentions: 1
Published: about 7 years ago

10.1038/s41419-019-2134-8

Intramitochondrial Src kinase links mitochondrial dysfunctions and aggressiveness of breast cancer cells
Cited by: 21
Author(s): Marie-Ange Djeungoue-Petga, Olivier Lurette, Stéphanie Jean, Geneviève Hamel-Côté, Rebeca Martín-Jiménez, Marine Bou, Astrid Cannich, Patrick Roy, Étienne Hébert-Chatelain
Software Mentions: 1
Published: almost 7 years ago

10.1038/cddis.2014.489

Characterization of novel markers of senescence and their prognostic potential in cancer
Cited by: 172
Author(s): Mohammad Althubiti, Larissa Lezina, Samantha Carrera, Rebekah Jukes-Jones, Susan Giblett, Alexey V. Antonov, Nikolai A. Barlev, Gerald Saldanha, Catrin Pritchard, Kelvin Cain, Salvador Macip
Software Mentions: 1
Published: almost 12 years ago

10.1038/s41419-021-03569-z

An interaction between PRRT2 and Na+/K+ ATPase contributes to the control of neuronal excitability
Cited by: 12
Author(s): Bruno Sterlini, Alessandra Romei, Chiara Parodi, Davide Aprile, Michele Oneto, Anita Aperia, Pierluigi Valente, Flavia Valtorta, Anna Fassio, Pietro Baldelli, Fabio Benfenati, Anna Corradi
Software Mentions: 1
Published: over 5 years ago

10.1038/s41420-019-0185-3

CTDP1 regulates breast cancer survival and DNA repair through BRCT-specific interactions with FANCI
Cited by: 13
Author(s): Wen Feng Hu, Kimiko L. Krieger, Dragana Lagundžin, Xueli Li, Ronald S. Cheung, Toshiyasu Taniguchi, Keith R. Johnson, Tadayoshi Bessho, Alvaro N.A. Monteiro, Nicholas T. Woods
Software Mentions: 1
Published: about 7 years ago

10.1038/cddiscovery.2017.10

Galectin-1 inhibition attenuates profibrotic signaling in hypoxia-induced pulmonary fibrosis
Cited by: 29
Author(s): Jaymin J. Kathiriya, Niyati Nakra, Jenna Nixon, Puja S Patel, Vijay Vaghasiya, Ahmed A. Alhassani, Zhi Tian, Diane Allen‐Gipson, Vrushank Davé
Software Mentions: 1
Published: over 9 years ago

10.1038/celldisc.2015.25

Senataxin controls meiotic silencing through ATR activation and chromatin remodeling
Cited by: 27
Author(s): Abrey J. Yeo, Olivier J. Bécherel, John Luff, Mark E. Graham, Derek J. Richard, Martin F. Lavin
Software Mentions: 1
Published: almost 11 years ago

10.1038/s41421-018-0071-9

The metacaspase Yca1 maintains proteostasis through multiple interactions with the ubiquitin system
Cited by: 14
Author(s): Amit Shrestha, Steve Brunette, William L. Stanford, Lynn A. Megeney
Software Mentions: 1
Published: over 7 years ago

10.1111/j.1462-5822.2011.01582.x

Activation of a PAK-MEK signalling pathway in malaria parasite-infected erythrocytes
Cited by: 66
Author(s): Audrey Sicard, Jean-Phillipe Semblat, Caroline Doerig, Romain Hamelin, Marc Moniatte, Dominique Dorin‐Semblat, Julie A. Spicer, Anubhav Srivastava, Silke Retzlaff, Volker Heussler, Andrew P. Waters, Christian Doerig
Software Mentions: 1
Published: over 15 years ago

10.1111/cmi.13027

<scp>Eimeria tenellaROP</scp>kinase<scp>EtROP1</scp>induces G0/G1 cell cycle arrest and inhibits host cell apoptosis
Cited by: 21
Author(s): Mamadou Diallo, Alix Sausset, Audrey Gnahoui‐David, Adeline Ribeiro E Silva, Aurélien Brionne, Yves Le Vern, Françoise Bussière, Julie Tottey, Sonia Lacroix‐Lamandé, Fabrice Laurent, Anne Silvestre
Software Mentions: 1
Published: over 7 years ago

10.1007/s00018-019-03267-2

Toxoplasma gondii ROP16 kinase silences the cyclin B1 gene promoter by hijacking host cell UHRF1-dependent epigenetic pathways
Cited by: 12
Author(s): Marcela Sabou, Cécile Doderer-Lang, Caroline Leyer, Ana Konjic, Sophie Kubina, Sarah Lennon, Olivier Rohr, Stéphane Viville, Sarah Cianférani, Ermanno Candolfi, Alexander W. Pfaff, Julie Brunet
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2021.675507

Transition From Proto-Kranz-Type Photosynthesis to HCO3– Use Photosynthesis in the Amphibious Plant Hygrophila polysperma
Cited by: 6
Author(s): Genki Horiguchi, Kaori Matsumoto, Kyosuke Nemoto, Mayu Inokuchi, Naoki Hirotsu
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2019.00580

Elimination of Omega-1,2 Gliadins From Bread Wheat (Triticum aestivum) Flour: Effects on Immunogenic Potential and End-Use Quality
Cited by: 34
Author(s): Susan B. Altenbach, Han-Chang Chang, Xuechen Yu, Bradford W. Seabourn, Peter H.R. Green, Armin Alaedini
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2013.00065

Comparative Proteomics of Chloroplasts Envelopes from Bundle Sheath and Mesophyll Chloroplasts Reveals Novel Membrane Proteins with a Possible Role in C4-Related Metabolite Fluxes and Development
Cited by: 12
Author(s): Kalpana Manandhar-Shrestha, Banita Tamot, Evan P.S. Pratt, S. Saitie, Andrea Bräutigam, Andreas P.M. Weber, Susanne Hoffmann-Benning
Software Mentions: 1
Published: over 13 years ago

10.3389/fpls.2014.00661

Plant natriuretic peptides induce proteins diagnostic for an adaptive response to stress
Cited by: 21
Author(s): Ilona Turek, Claudius Marondedze, Janet Wheeler, Chris Gehring, Helen Ruth Irving
Software Mentions: 1
Published: almost 12 years ago

10.3389/fpls.2020.01053

Wheat Line “RYNO3936” Is Associated With Delayed Water Stress-Induced Leaf Senescence and Rapid Water-Deficit Stress Recovery
Cited by: 10
Author(s): Marlon-Schylor L. le Roux, N. Francois V. Burger, Maré Vlok, K. Kunert, Christopher A. Cullis, Anna‐Maria Botha
Software Mentions: 1
Published: about 6 years ago

10.3389/fpls.2021.663707

dsRNA Molecules From the Tobacco Mosaic Virus p126 Gene Counteract TMV-Induced Proteome Changes at an Early Stage of Infection
Cited by: 5
Author(s): Naga Charan Konakalla, Mukesh Nitin, Athanasios Kaldis, Hema Masarapu, Sébastien Carpentier, Andreas E. Voloudakis
Software Mentions: 1
Published: over 5 years ago

10.3389/fpls.2018.00860

Sex-Dependent Variation of Pumpkin (Cucurbita maxima cv. Big Max) Nectar and Nectaries as Determined by Proteomics and Metabolomics
Cited by: 16
Author(s): Elizabeth C. Chatt, Patrick von Aderkas, Clay J. Carter, Derek Smith, Monica L. Elliott, Basil J. Nikolau
Software Mentions: 1
Published: about 8 years ago

10.3389/fpls.2012.00164

MRMaid: The SRM Assay Design Tool for Arabidopsis and Other Species
Cited by: 14
Author(s): Jun Fan, Fady Mohareb, Alexandra M. E. Jones, Conrad Bessant
Software Mentions: 1
Published: over 14 years ago

10.3389/fpls.2019.00936

Tomato Dynamin Related Protein 2A Associates With LeEIX2 and Enhances PRR Mediated Defense by Modulating Receptor Trafficking
Cited by: 10
Author(s): Lorena Pizarro, Meirav Leibman‐Markus, Silvia Schuster, Maya Bar, Adi Avni
Software Mentions: 1
Published: about 7 years ago

10.3389/fpls.2020.569552

Putative Bifunctional Chorismate Mutase/Prephenate Dehydratase Contributes to the Virulence of Acidovorax citrulli
Cited by: 9
Author(s): Minyoung Kim, Jong-Chan Lee, Lynn Heo, Sang-Wook Han
Software Mentions: 1
Published: almost 6 years ago

10.3389/fpls.2016.02023

Proteome Analysis Reveals Extensive Light Stress-Response Reprogramming in the Seagrass Zostera muelleri (Alismatales, Zosteraceae) Metabolism
Cited by: 40
Author(s): Manoj Kumar, Matthew P. Padula, Peter A. Davey, Mathieu Pernice, Zhijian Jiang, Gaurav Sablok, Loretto Contreras–Porcia, Peter J. Ralph
Software Mentions: 1
Published: over 9 years ago

10.3389/fpls.2020.00232

The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes
Cited by: 7
Author(s): R. N. Singh, Rohana Liyanage, Chirag Gupta, Jackson O. Lay, Andy Pereira, Clemencia M. Rojas
Software Mentions: 1
Published: over 6 years ago

10.3389/fpls.2016.01314

Proteomic Studies on the Effects of Lipo-Chitooligosaccharide and Thuricin 17 under Unstressed and Salt Stressed Conditions in Arabidopsis thaliana
Cited by: 45
Author(s): Sowmyalakshmi Subramanian, Alfred Souleimanov, Donald L. Smith
Software Mentions: 1
Published: about 10 years ago

10.3389/frobt.2018.00081

Immersive VR and Education: Embodied Design Principles That Include Gesture and Hand Controls
Cited by: 150
Author(s): Mina C. Johnson-Glenberg
Software Mentions: 1
Published: about 8 years ago

10.3389/fsurg.2016.00005

Elevated Serum Levels of Alpha-Fetoprotein in Patients with Infantile Hemangioma Are Not Derived from within the Tumor
Cited by: 8
Author(s): Tinte Itinteang, Alice M. Chibnall, Reginald Marsh, Jonathan C. Dunne, Sophie de Jong, Paul F. Davis, Philip Leadbitter, Swee T. Tan
Software Mentions: 1
Published: over 10 years ago

10.3389/fsurg.2015.00026

Expression of Cathepsins B, D, and G in Infantile Hemangioma
Cited by: 21
Author(s): Tinte Itinteang, Daria A. Chudakova, Jonathan C. Dunne, Paul F. Davis, Swee T. Tan
Software Mentions: 1
Published: over 11 years ago

10.3389/fnsyn.2015.00020

Physical Interactions and Functional Relationships of Neuroligin 2 and Midbrain Serotonin Transporters
Cited by: 10
Author(s): Ran Ye, Meagan A. Quinlan, Hideki Iwamoto, Hao Wu, Noah H. Green, Christopher S. Jetter, Douglas G. McMahon, Jeremy Veestra-VanderWeele, Pat Levitt, Randy D. Blakely
Software Mentions: 1
Published: over 10 years ago

10.3389/fvets.2019.00418

Salivary Scavenger and Agglutinin (SALSA) Is Expressed in Mucosal Epithelial Cells and Decreased in Bronchial Epithelium of Asthmatic Horses
Cited by: 4
Author(s): Gary Kwok Cheong Lee, Laurence Tessier, Dorothee Bienzle
Software Mentions: 1
Published: almost 7 years ago

10.3389/fvets.2018.00141

Development of a Multidimensional Proteomic Approach to Detect Circulating Immune Complexes in Cattle Experimentally Infected With Mycobacterium bovis
Cited by: 6
Author(s): Syeda A. Hadi, W. Ray Waters, Mitchell V. Palmer, Konstantin P. Lyashchenko, Srinand Sreevatsan
Software Mentions: 1
Published: about 8 years ago

10.3389/fvets.2018.00040

Trypanosoma equiperdum Low Molecular Weight Proteins As Candidates for Specific Serological Diagnosis of Dourine
Cited by: 10
Author(s): Mirella Luciani, Tiziana Di Febo, Massimiliano Orsini, Ivanka Krasteva, Angela Cattaneo, Michele Podaliri Vulpiani, Chiara Di Pancrazio, Ángela Bachi, Manuela Tittarelli
Software Mentions: 1
Published: over 8 years ago

10.1186/1742-9994-11-41

Litter size manipulation in laboratory mice: an example of how proteomic analysis can uncover new mechanisms underlying the cost of reproduction
Cited by: 17
Author(s): Marine Plumel, Antoine Stier, Danièle Thiersé, Alain Van Dorsselaer, François Criscuolo, Fabrice Bertile
Software Mentions: 1
Published: over 12 years ago

10.1007/s10142-019-00694-z

Exploiting the reference genome sequence of hexaploid wheat: a proteomic study of flour proteins from the cultivar Chinese Spring
Cited by: 22
Author(s): Susan B. Altenbach, Han-Chang Chang, Annamaria Simon-Buss, Toni Mohr, Naxin Huo, Yong Gu
Software Mentions: 1
Published: about 7 years ago

10.1016/j.funbio.2012.07.004

Expression and secretion of Aspergillus fumigatus proteases are regulated in response to different protein substrates
Cited by: 50
Author(s): Edward John Farnell, Karine Rousseau, David J. Thornton, Paul Bowyer, Sarah E. Herrick
Software Mentions: 1
Published: about 14 years ago

10.1534/g3.114.012625

Histone H2B Ubiquitination Promotes the Function of the Anaphase-Promoting Complex/Cyclosome inSchizosaccharomyces pombe
Cited by: 12
Author(s): Zachary C. Elmore, Janel R. Beckley, Jun‐Song Chen, Kathleen L. Gould
Software Mentions: 1
Published: about 12 years ago

10.1534/g3.116.035675

Candida albicans Is Resistant to Polyglutamine Aggregation and Toxicity
Cited by: 6
Author(s): Michelle Leach, TaeHyung Kim, Sonja E. DiGregorio, Cathy Collins, Zhaolei Zhang, Martin L. Duennwald, Leah E. Cowen
Software Mentions: 1
Published: over 9 years ago

10.1534/g3.118.200877

Identifying Pseudomonas syringae Type III Secreted Effector Function via a Yeast Genomic Screen
Cited by: 15
Author(s): Ahwon Lee, D. Patrick Bastedo, Ji‐Young Youn, Timothy Lo, Maggie A. Middleton, Inga Kireeva, Jee Yeon Lee, Sara Sharifpoor, Anastasia Baryshnikova, Jianfeng Zhang, Pauline W. Wang, Sergio G. Peisajovich, Michael Constanzo, Brenda Andrews, Charles Boone, Darrell Desveaux, David S. Guttman
Software Mentions: 1
Published: over 7 years ago

10.1534/g3.119.400863

Nonsynonymous Mutations in Linker-2 of the Pdr5 Multidrug Transporter Identify a New RNA Stability Element
Cited by: 3
Author(s): Hadiar Rahman, Andrew Rudrow, Joshua Carneglia, Sister Stephen Patrick Joly, Dante Nicotera, Michael J. Naldrett, John S. Choy, Suresh V. Ambudkar, John Golin
Software Mentions: 1
Published: over 6 years ago

10.1093/gastro/gou066

Bile proteomics for differentiation of malignant from benign biliary strictures: a pilot study
Cited by: 37
Author(s): Udayakumar Navaneethan, Vennisvasanth Lourdusamy, Preethi G.K. Venkatesh, Belinda Willard, Madhusudhan R. Sanaka, Mansour A. Parsi
Software Mentions: 1
Published: almost 12 years ago

10.3390/genes11040449

Ecological Processes Affecting Long-Term Eukaryote and Prokaryote Biofilm Persistence in Nitrogen Removal from Sewage
Cited by: 3
Author(s): Inga Leena Angell, Linda Bergaust, Jon Fredrik Hanssen, Else Marie Aasen, Knut Rudi
Software Mentions: 1
Published: over 6 years ago

10.3390/genes12030397

Expansion and Diversification of Fluorescent Protein Genes in Fifteen Acropora Species during the Evolution of Acroporid Corals
Cited by: 4
Author(s): Rio Kashimoto, Kanako Hisata, Chuya Shinzato, Noriyuki Satoh, Eiichi Shoguchi
Software Mentions: 1
Published: over 5 years ago

10.1534/genetics.119.302558

Germ Cell Lineage Homeostasis in Drosophila Requires the Vasa RNA Helicase
Cited by: 13
Author(s): Zeljko Durdevic, Anne Ephrussi
Software Mentions: 1
Published: almost 7 years ago

10.1186/gb-2007-8-3-r34

Hawkeye: an interactive visual analytics tool for genome assemblies
Cited by: 80
Author(s): Michael C. Schatz, Adam M. Phillippy, Ben Shneiderman, Steven L. Salzberg
Software Mentions: 1
Published: over 19 years ago

10.1186/gb-2013-14-10-r119

A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation
Cited by: 267
Author(s): Mario Iurlaro, Gabriella Ficz, David Oxley, Eun‐Ang Raiber, Martin Bachman, Michael J. Booth, Simon Andrews, Shankar Balasubramanian, Wolf Reik
Software Mentions: 1
Published: over 13 years ago

10.1186/s13059-015-0582-8

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome
Cited by: 231
Author(s): Jarrod Chapman, Martin Mascher, Aydın Buluç, Kerrie Barry, Evangelos Georganas, Adam M. Session, Veronika Strnadova, Jerry Jenkins, Sunish K. Sehgal, Leonid Oliker, Jeremy Schmutz, Katherine Yelick, Uwe Scholz, Robbie Waugh, Jesse Poland, Gary J. Muehlbauer, Nils Stein, Daniel S. Rokhsar
Software Mentions: 1
Published: over 11 years ago

10.1093/gigascience/giaa045

Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal
Cited by: 15
Author(s): Graham Etherington, Darren Heavens, David Baker, Ashleigh Lister, Rose McNelly, G Accinelli Garcia, Bernardo Clavijo, Iain C. Macaulay, Wilfried Haerty, Federica Di Palma
Software Mentions: 1
Published: over 6 years ago

10.1093/glycob/cwz029

Characterizing the selectivity of ER α-glucosidase inhibitors
Cited by: 14
Author(s): Sarah O’Keefe, Quentin P. Roebuck, Namiki Izumi, Shuichi Hirono, Atsushi Kato, Robert J. Nash, Stephen High
Software Mentions: 1
Published: over 7 years ago

10.1007/s13577-012-0053-4

Proteomic analysis of differential protein expression by brain metastases of gynecological malignancies
Cited by: 34
Author(s): Ayako Yoshida, Naoki Okamoto, Akiko Tozawa-Ono, Hirotaka Koizumi, Kazushige Kiguchi, Bunpei Ishizuka, Toshio Kumai, Nao Suzuki
Software Mentions: 1
Published: over 13 years ago

10.1128/IAI.00255-15

Persistent Staphylococcus aureus Isolates from Two Independent Cases of Bacteremia Display Increased Bacterial Fitness and Novel Immune Evasion Phenotypes
Cited by: 29
Author(s): Rebecca Richards, Richard D. Haigh, Ben Pascoe, Samuel K. Sheppard, Francis W. Price, David R. Jenkins, Kumar Rajakumar, Julie A. Morrissey
Software Mentions: 1
Published: about 11 years ago

10.1128/IAI.00386-17

Salmonella enterica Serovar Typhimurium Alters the Extracellular Proteome of Macrophages and Leads to the Production of Proinflammatory Exosomes
Cited by: 61
Author(s): Winnie W. Hui, Kamil Hercík, Sayali Belsare, Navatha Alugubelly, Beata Clapp, Carlos Rinaldi, Mariola J. Edelmann
Software Mentions: 1
Published: over 8 years ago

10.1128/IAI.00673-20

The Yersinia pestis GTPase BipA Promotes Pathogenesis of Primary Pneumonic Plague
Cited by: 4
Author(s): Samantha D Crane, Srijon Kaushik Banerjee, Kara R. Eichelberger, Richard C. Kurten, William E. Goldman, Roger D. Pechous
Software Mentions: 1
Published: over 5 years ago

10.1007/s10753-019-00957-8

Chinese Birch Pollen Allergy and Immunotherapy in Mice
Cited by: 10
Author(s): Zhibo Xie, Jie Yin
Software Mentions: 1
Published: over 7 years ago

10.3390/insects10090282

The Effect of Diet on the Composition and Stability of Proteins Secreted by Honey Bees in Honey
Cited by: 18
Author(s): Oleg Lewkowski, Carmen Ioana Mureşan, Dirk Dobritzsch, Matthew Fuszard, Silvio Erler
Software Mentions: 1
Published: about 7 years ago

10.1590/S1677-5538.IBJU.2020.02.07

Editorial Comment: New Insights on the Mechanisms Affecting Fertility in Men with Non-Seminoma Testicular Cancer before Cancer Therapy.
Cited by: 0
Author(s): Gustavo Cardoso Guimarães
Software Mentions: 1
Published: over 6 years ago

10.1172/jci.insight.96184

Nox4 reprograms cardiac substrate metabolism via protein O-GlcNAcylation to enhance stress adaptation
Cited by: 43
Author(s): Adam Nabeebaccus, Anna Zoccarato, Anne Dragøy Hafstad, Célio X.C. Santos, Ellen Aasum, Alison C. Brewer, Min Zhang, Matteo Beretta, Xiaoke Yin, James A. West, Katrin Schröder, Julian L. Griffin, Thomas R. Eykyn, E. Dale Abel, Manuel Mayr, Ajay M. Shah
Software Mentions: 1
Published: over 8 years ago

10.1172/jci.insight.135923

Elevating EGFR-MAPK program by a nonconventional Cdc42 enhances intestinal epithelial survival and regeneration
Cited by: 16
Author(s): Xiao Zhang, Sheila Bandyopadhyay, Leandro Araújo, Kevin Tong, Juan Flores, Daniel Laubitz, Yanlin Zhao, George Yap, Jingren Wang, Qingze Zou, Ronaldo P. Ferraris, Lanjing Zhang, Wenwei Hu, Edward M. Bonder, Pawel R. Kiela, Robert J. Coffey, Michael P. Verzi, Ivaylo I. Ivanov, Nan Gao
Software Mentions: 1
Published: about 6 years ago

10.1172/jci.insight.142073

Early defects in mucopolysaccharidosis type IIIC disrupt excitatory synaptic transmission
Cited by: 7
Author(s): Camila Pará, Poulomee Bose, L. Travi Bruno, Erika Freemantle, Mahsa Taherzadeh, Xuefang Pan, Chanshuai Han, Peter S. McPherson, Jean-Claude Lacaille, Éric Bonneil, Pierre Thibault, Claire O’Leary, Brian Bigger, Carlos R. Morales, Graziella Di Cristo, Alexey V. Pshezhetsky
Software Mentions: 1
Published: about 5 years ago

10.1016/j.jaci.2017.01.039

Proteomic analysis of filaggrin deficiency identifies molecular signatures characteristic of atopic eczema
Cited by: 42
Author(s): Martina S. Elias, Heather A. Long, Carla F. Newman, P. David Wilson, Andrew B. West, Paul McGill, Keith Wu, Michael Donaldson, Nick J. Reynolds
Software Mentions: 1
Published: almost 9 years ago

10.1128/JB.00099-20

YjbH Requires Its Thioredoxin Active Motif for the Nitrosative Stress Response, Cell-to-Cell Spread, and Protein-Protein Interactions in Listeria monocytogenes
Cited by: 4
Author(s): Brittany R. Ruhland
Software Mentions: 1
Published: over 6 years ago

Projects: pypi: Scaffold

Enhanced Analysis

Science Score: 65/100

Penalties:

Papers Mentioning Scaffold 1,866