pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0003923

Media Ion Composition Controls Regulatory and Virulence Response of Salmonella in Spaceflight
Cited by: 138
Author(s): James W. Wilson, C. Mark Ott, Laura Quick, Richard R. Davis, Kerstin Höner zu Bentrup, Aurélie Crabbé, Emily Richter, Shameema Sarker, Jennifer Barrila, Steffen Porwollik, Pui Cheng, Michael McClelland, George Tsaprailis, Timothy Radabaugh, Andrea Hunt, Miti Shah, Mayra Nelman-Gonzalez, Steve Hing, Macarena Parra, Paula Dumars, Kelly L. Norwood, Ramona Bober, Jennifer Devich, Ashleigh Ruggles, Autumn Cdebaca, Satro Narayan, J. D. Benjamin, Carla Goulart, Mark Rupert, Luke Catella, Michael J. Schurr, Kent L. Buchanan, Lisa A. Morici, James McCracken, Marc D. Porter, Duane L. Pierson, Scott M. Smith, Max Mergeay, Natalie Leys, Heidemarie M. Stefanyshyn-Piper, Dominic Gorie, Cheryl A. Nickerson
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0119350

Comparative Proteome Analysis of Brown Adipose Tissue in Obese C57BL/6J Mice Using iTRAQ-Coupled 2D LC-MS/MS
Cited by: 13
Author(s): Juan Li, Weigang Zhao, Zhufang Shen, Tao Yuan, Shuainan Liu, Quan Liu, Yong Fu, Wei Sun
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0181779

Microwave & magnetic proteomics of macrophages from patients with HIV-associated cognitive impairment
Cited by: 3
Author(s): Yisel M. Cantres-Rosario, Frances M. Acevedo-Mariani, Juliana Pérez-Laspiur, William E. Haskins, Marinés Plaud, Yadira M. Cantres-Rosario, Richard L. Skolasky, Israel J Méndez-Bermúdez, Valerie Wojna, Loyda M. Meléndez
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0082622

Proteomic Analysis of a NAP1 Clostridium difficile Clinical Isolate Resistant to Metronidazole
Cited by: 58
Author(s): Patrick Chong, Tarah Lynch, Stuart McCorrister, Pamela Kibsey, Mark A. Miller, Denise Gravel, Garrett Westmacott, Michael R. Mulvey
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0140826

Metabolic Interplay between the Asian Citrus Psyllid and Its Profftella Symbiont: An Achilles’ Heel of the Citrus Greening Insect Vector
Cited by: 62
Author(s): John S. Ramsey, Richard S. Johnson, Jason S. Hoki, Angela Kruse, Jaclyn Mahoney, Mark E. Hilf, Wayne B. Hunter, David G. Hall, Frank C. Schroeder, Michael J. MacCoss, Michelle Cilia
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0157895

The Eukaryotic-Specific ISD11 Is a Complex-Orphan Protein with Ability to Bind the Prokaryotic IscS
Cited by: 6
Author(s): Robert Yan, Martin Friemel, Claudia M. N. Aloisi, Martijn A. Huynen, Ian A. Taylor, Silke Leimkühler, Annalisa Pastore
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0020979

Positive Selection Shaped the Convergent Evolution of Independently Expanded Kallikrein Subfamilies Expressed in Mouse and Rat Saliva Proteomes
Cited by: 17
Author(s): Robert C. Karn, Christina M. Laukaitis
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0076108

Metaproteome Analysis of Endodontic Infections in Association with Different Clinical Conditions
Cited by: 36
Author(s): José C. Provenzano, José F. Siqueira, Isabela N. Rôças, Romênia R. Domingues, Adriana Franco Paes Leme, Márcia R. S. Silva
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0095507

In Vivo Substrates of the Lens Molecular Chaperones αA-Crystallin and αB-Crystallin
Cited by: 27
Author(s): Usha P. Andley, James P. Malone, R. Reid Townsend
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0227449

Pathologic properties of SOD3 variant R213G in the cardiovascular system through the altered neutrophils function
Cited by: 3
Author(s): Myung-Ja Kwon, Kyo‐Young Lee, Won-Gug Ham, Lee-Jung Tak, Gaurav Agrahari, Taeyoon Kim
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0220225

Genome annotation improvements from cross-phyla proteogenomics and time-of-day differences in malaria mosquito proteins using untargeted quantitative proteomics
Cited by: 2
Author(s): Lisa Imrie, Thierry Le Bihan, Áine O’Toole, Paul V. Hickner, William A. Dunn, Benjamin Alexander Weise, Samuel S. C. Rund
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0132949

Enterococcus faecalis Glycolipids Modulate Lipoprotein-Content of the Bacterial Cell Membrane and Host Immune Response
Cited by: 8
Author(s): Christian Theilacker, Ann-Kristin Diederich, Andreas Otto, Irina G. Sava, Dominique Wobser, Yinyin Bao, Katrin Hese, Melanie Broszat, Philipp Henneke, Dörte Becher, Johannes Hüebner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0037035

Peptide Array X-Linking (PAX): A New Peptide-Protein Identification Approach
Cited by: 16
Author(s): Hirokazu Okada, Akiyoshi Uezu, Erik J. Soderblom, M. Arthur Moseley, Frank B. Gertler, Scott H. Soderling
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0167086

An Accessory Protease Inhibitor to Increase the Yield and Quality of a Tumour-Targeting mAb in Nicotiana benthamiana Leaves
Cited by: 27
Author(s): Philippe V. Jutras, Carla Marusic, Chiara Lonoce, Carole Deflers, Marie‐Claire Goulet, Eugenio Benvenuto, Dominique Michaud, Marcello Donini
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0011380

HOIL-1L Interacting Protein (HOIP) as an NF-κB Regulating Component of the CD40 Signaling Complex
Cited by: 27
Author(s): Bruce S. Hostager, Daniel K. Fox, Douglas Whitten, Curtis G. Wilkerson, Betty A. Eipper, Victor P. Francone, Paul B. Rothman, John Colgan
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0166883

Overexpressed Proteins in Hypervirulent Clade 8 and Clade 6 Strains of Escherichia coli O157:H7 Compared to E. coli O157:H7 EDL933 Clade 3 Strain
Cited by: 12
Author(s): Natalia Amigo, Qí Zhāng, Ariel Fernando Amadío, Qun‐Jie Zhang, Wanderson Marques da Silva, Baiyuan Cui, Zhongjian Chen, Mariano Larzábal, Jinlong Bei, Angel Cataldi
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0203708

The DEAD-box RNA-binding protein DDX6 regulates parental RNA decay for cellular reprogramming to pluripotency
Cited by: 11
Author(s): Daisuke Kami, Tomoya Kitani, Akihiro Nakamura, Naoki Wakui, Ryuta Mizutani, Masahito Ohue, Fuyuki Kametani, Nobuyoshi Akimitsu, Satoshi Gojo
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0047866

Venom Proteome of the Box Jellyfish Chironex fleckeri
Cited by: 56
Author(s): Diane L. Brinkman, Ammar Aziz, Alex Loukas, Jeremy Potriquet, Jamie Seymour, Jason Mulvenna
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0115454

Did Androgen-Binding Protein Paralogs Undergo Neo- and/or Subfunctionalization as the Abp Gene Region Expanded in the Mouse Genome?
Cited by: 9
Author(s): Robert C. Karn, Amanda Chung, Christina M. Laukaitis
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0040896

First Insight into the Kinome of Human Regulatory T Cells
Cited by: 14
Author(s): Sebastian König, Michaël Probst-Kepper, Tobias Reinl, Andreas Jeron, Jochen Huehn, Burkhart Schraven, Lothar Jänsch
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0228871

Variability in protein cargo detection in technical and biological replicates of exosome-enriched extracellular vesicles
Cited by: 13
Author(s): Suma Tiruvayipati, Donald J. Wolfgeher, Yue Ming, Fangfang Duan, Jorge Andrade, Hui Jiang, Lucia Schuger
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0074502

Identification of an Intrinsic Determinant Critical for Maspin Subcellular Localization and Function
Cited by: 18
Author(s): Sijana H. Dzinic, Alexander Kaplun, Xiao Hua Li, M. Margarida Bernardo, Yan Meng, Ivory Dean, David Krass, Paul M. Stemmer, Namhee Shin, Fulvio Lonardo, Sheng Shen
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0135973

Polysomes of Trypanosoma brucei: Association with Initiation Factors and RNA-Binding Proteins
Cited by: 33
Author(s): Claudius Klein, Monica Terrao, Diana Inchaustegui Gil, Christine Clayton
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0067513

The Cardiac Acetyl-Lysine Proteome
Cited by: 82
Author(s): D. Brian Foster, Ting Liu, Jasma Rucker, Robert N. O’Meally, Lauren DeVine, Robert N. Cole, Brian O’Rourke
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0119222

Quantitative Proteomics Reveal Distinct Protein Regulations Caused by Aggregatibacter actinomycetemcomitans within Subgingival Biofilms
Cited by: 36
Author(s): Kai Bao, Nagihan Bostancı, Nathalie Selevsek, Thomas Thurnheer, Georgios N. Belibasakis
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0100426

Four Escherichia coli O157:H7 Phages: A New Bacteriophage Genus and Taxonomic Classification of T1-Like Phages
Cited by: 49
Author(s): Yan D. Niu, Tim A. McAllister, John H. E. Nash, Andrew M. Kropinski, Kim Stanford
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0077484

Cell Survival Following Radiation Exposure Requires miR-525-3p Mediated Suppression of ARRB1 and TXN1
Cited by: 17
Author(s): Anne Kraemer, Žarko Barjaktarović, Hakan Sarioglu, Klaudia Winkler, Friederike Eckardt‐Schupp, Soile Tapio, Michael J. Atkinson, Simone Moertl
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0087613

Genome-Wide Analysis of Antiviral Signature Genes in Porcine Macrophages at Different Activation Statuses
Cited by: 35
Author(s): Yongming Sang, Wyatt Brichalli, Raymond R. R. Rowland, Frank Blecha
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0071769

Cofilin Oligomer Formation Occurs In Vivo and Is Regulated by Cofilin Phosphorylation
Cited by: 24
Author(s): Pankaj Goyal, Dharmendra Pandey, Daniela Brünnert, Elke Hammer, Marek Zygmunt, Wolfgang Siess
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0231114

Drosophila MARF1 ensures proper oocyte maturation by regulating nanos expression
Cited by: 8
Author(s): Shinichi Kawaguchi, Mizuki Ueki, Toshie Kai
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0104316

Vaccine-Mediated Immune Responses to Experimental Pulmonary Cryptococcus gattii Infection in Mice
Cited by: 36
Author(s): A. K. Chaturvedi, Rumanasma S. Hameed, Karen L. Wozniak, Camaron R. Hole, Chrissy M. Leopold Wager, Susan T. Weintraub, José L. Lopez-Ribot, Floyd L. Wormley
Software Mentions: 1
Published: over 10 years ago

10.3390/cancers13174419

Defining the Tumor Microenvironment by Integration of Immunohistochemistry and Extracellular Matrix Targeted Imaging Mass Spectrometry
Cited by: 9
Author(s): Denys Rujchanarong, Julia Lefler, Janet Saunders, Sarah Pippin, Laura Spruill, Jennifer R. Bethard, Lauren E. Ball, Anand Mehta, Richard Drake, Michael C. Ostrowski, Peggi Angel
Software Mentions: 1
Published: about 3 years ago

10.3390/cancers13071660

Malignant Pleural Mesothelioma Interactome with 364 Novel Protein-Protein Interactions
Cited by: 8
Author(s): Kalyani B. Karunakaran, Naveena Yanamala, Gregory R. Boyce, Michael J. Becich, Madhavi K. Ganapathiraju
Software Mentions: 1
Published: over 3 years ago

10.3390/cancers13184521

Protein Ligands in the Secretome of CD36+ Fibroblasts Induce Growth Suppression in a Subset of Breast Cancer Cell Lines
Cited by: 8
Author(s): Kosar Jabbari, Garrett Winkelmaier, Cody Andersen, Paul Yaswen, David R. Quilici, Saori Furuta, Qingsu Cheng, Bahram Parvin
Software Mentions: 1
Published: about 3 years ago

10.3390/cancers8030037

Proteomics Analysis Reveals Novel RASSF2 Interaction Partners
Cited by: 7
Author(s): Thibaut Barnoud, Daniel W. Wilkey, Michael L. Merchant, Jennifer A. Clark, Howard Donninger
Software Mentions: 1
Published: over 8 years ago

10.3390/cancers12102923

Uveal Melanoma-Derived Extracellular Vesicles Display Transforming Potential and Carry Protein Cargo Involved in Metastatic Niche Preparation
Cited by: 24
Author(s): Thupten Tsering, Alexander Laskaris, Mohamed Abdouh, Prisca Bustamante, Sabrina Parent, Eva Jin, Sarah Tadhg Ferrier, Goffredo Arena, Julia V. Burnier
Software Mentions: 1
Published: about 4 years ago

10.3390/cancers11020188

Phosphorylation-Dependent Intra-Domain Interaction of the Cx37 Carboxyl-Terminus Controls Cell Survival
Cited by: 8
Author(s): Nicole L. Jacobsen, Tasha K. Pontifex, Paul Langlais, Janis M. Burt
Software Mentions: 1
Published: almost 6 years ago

10.3390/cancers13020251

DNA-Damage-Induced Alternative Splicing of p53
Cited by: 9
Author(s): Jing Chen, Dadong Zhang, Xiaodi Qin, Kouros Owzar, Jennifer J. McCann, Michael B. Kastan
Software Mentions: 1
Published: almost 4 years ago

10.3390/cancers13163938

Nuclear Pyruvate Kinase M2 (PKM2) Contributes to Phosphoserine Aminotransferase 1 (PSAT1)-Mediated Cell Migration in EGFR-Activated Lung Cancer Cells
Cited by: 10
Author(s): Rumeysa Biyik‐Sit, Traci Kruer, Susan Dougherty, James Bradley, Daniel W. Wilkey, Michael L. Merchant, John O. Trent, Brian F. Clem
Software Mentions: 1
Published: over 3 years ago

10.1016/j.chembiol.2018.05.013

Genetically Encoded Protein Phosphorylation in Mammalian Cells
Cited by: 45
Author(s): Václav Beránek, Christopher D. Reinkemeier, Michael S. Zhang, Alexandria Deliz Liang, Gene Kym, Jason W. Chin
Software Mentions: 1
Published: about 6 years ago

10.1186/s12964-019-0494-4

Extracellular vesicles originating from glioblastoma cells increase metalloproteinase release by astrocytes: the role of CD147 (EMMPRIN) and ionizing radiation
Cited by: 19
Author(s): Nicholas Colangelo, Edouard I. Azzam
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12964-019-0484-6

TRIM30 modulates Interleukin-22-regulated papillary thyroid Cancer cell migration and invasion by targeting Sox17 for K48-linked Polyubiquitination
Cited by: 4
Author(s): Wei Li, Fen Li, Weiwei Lei, Zezhang Tao
Software Mentions: 1
Published: almost 5 years ago

10.1038/s41418-018-0079-6

Post-translational modification of OCT4 in breast cancer tumorigenesis
Cited by: 55
Author(s): Yunhee Cho, Hang Won Kang, Seok-Jun Kim, Seul Lee, Sujin Jee, Sung Gwe Ahn, Min Jueng Kang, Joon Seon Song, Joon‐Yong Chung, Eugene C. Yi, Kyung–Hee Chun
Software Mentions: 1
Published: over 6 years ago

10.1038/s41418-019-0407-5

Targeting PML in triple negative breast cancer elicits growth suppression and senescence
Cited by: 24
Author(s): Leire Arreal, Marco Piva, Sonia Fernández, Ajinkya Revandkar, Ariane Schaub-Clerigué, Josep Villanueva, Amaia Zabala-Letona, Mikel Pujana, Ianire Astobiza, Ana R. Cortazar, Ivana Heřmanová, Laura Bozal-Basterra, Amaia Arruabarrena-Aristorena, Alfons Crespo, Lorea Valcárcel-Jiménez, Patricia Zúñiga-García, Françesc Canals, Verónica Torrano, Rosa Barrio, James D. Sutherland, Andrea Alimonti, Natalia Martín-Martín, Arkaitz Carracedo
Software Mentions: 1
Published: about 5 years ago

10.1038/s41419-020-2493-1

Chk1-mediated phosphorylation of Cdh1 promotes the SCFβTRCP-dependent degradation of Cdh1 during S-phase and efficient cell-cycle progression
Cited by: 7
Author(s): Debjani Pal, Adrian Torres, Benjamin R. Stromberg, Abbey L. Messina, Andrew Dickson, Kuntal De, Belinda Willard, Monica Venere, Matthew K. Summers
Software Mentions: 1
Published: over 4 years ago

10.1038/cddis.2015.108

XBP1 mitigates aminoglycoside-induced endoplasmic reticulum stress and neuronal cell death
Cited by: 58
Author(s): Naoki Oishi, Stefan Duscha, Heithem Boukari, Martin Meyer, Junbo Xie, Wei Gao, Thomas Schrepfer, Bernd Roschitzki, Erik C. Boettger, Jochen Schacht
Software Mentions: 1
Published: over 9 years ago

10.1038/cddis.2015.21

Structural and biochemical changes underlying a keratoderma-like phenotype in mice lacking suprabasal AP1 transcription factor function
Cited by: 16
Author(s): Ellen A. Rorke, Gautam Adhikary, Christina A. Young, Robert H. Rice, Peter M. Elias, Debbie Crumrine, Jason M. Meyer, Miroslav Blumenberg, Richard L. Eckert
Software Mentions: 1
Published: almost 10 years ago

10.1038/cddis.2015.353

Loss of serum response factor induces microRNA-mediated apoptosis in intestinal smooth muscle cells
Cited by: 16
Author(s): Chanjae H. Park, Moon Young Lee, Orazio J. Slivano, Paul J. Park, Se Eun Ha, Robyn M. Berent, Robert Fuchs, Nicholas C. Collins, Tian Yu, Syn Hannah, J. K. Park, Kotaro Horiguchi, Joseph M. Miano, Kenton M. Sanders, Seungil Ro
Software Mentions: 1
Published: almost 9 years ago

10.1038/s41419-021-03531-z

Inhibiting β-catenin disables nucleolar functions in triple-negative breast cancer
Cited by: 9
Author(s): Shannon E. Weeks, Sarah C. Kammerud, Brandon J. Metge, Heba Allah Alsheikh, David A. Schneider, Dongquan Chen, Shi Wei, James A. Mobley, Akinyemi I. Ojesina, Lalita A. Shevde, Rajeev S. Samant
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-021-03871-w

The RNA-binding protein HuR is a novel target of Pirh2 E3 ubiquitin ligase
Cited by: 15
Author(s): Alexandra Daks, Alexey Petukhov, Olga Fedorova, Oleg Shuvalov, Alena Kizenko, Elizaveta Tananykina, Elena Vasileva, Oleg V. Semenov, Andrew R. Bottrill, Nickolai A. Barlev
Software Mentions: 1
Published: over 3 years ago

10.1038/s41419-020-2519-8

The USP10-HDAC6 axis confers cisplatin resistance in non-small cell lung cancer lacking wild-type p53
Cited by: 34
Author(s): Chen Hu, Mu Zhang, Niko Moses, Cong li Hu, Lisa Polin, Wei Chen, Hyejeong Jang, Joshua R. Heyza, Agnes Malysa, Joseph A. Caruso, Shengyan Xiang, Steve M. Patrick, Paul M. Stemmer, Zhenkun Lou, Wenlong Bai, Chuangui Wang, Gerold Bepler, Xiaohong Mary Zhang
Software Mentions: 1
Published: over 4 years ago

10.1038/s41419-018-0461-9

Stomatin-like protein 2 regulates survivin expression in non-small cell lung cancer cells through β-catenin signaling pathway
Cited by: 26
Author(s): Cheng‐Ta Yang, Jhy-Ming Li, Lifu Li, Yousang Ko, Jeng-Ting Chen
Software Mentions: 1
Published: over 6 years ago

10.1038/s41419-019-1878-5

TM4SF5-mediated CD44v8-10 splicing variant promotes survival of type II alveolar epithelial cells during idiopathic pulmonary fibrosis
Cited by: 8
Author(s): Ji Eon Kim, Hye-Jin Kim, Jae Woo Jung, Dae-Geun Song, Dasomi Park, Haesong Lee, Hyejin Um, Jinsoo Park, Seo Hee Nam, Moonjae Cho, Sang Eun Lee
Software Mentions: 1
Published: about 5 years ago

10.1038/s41419-019-2134-8

Intramitochondrial Src kinase links mitochondrial dysfunctions and aggressiveness of breast cancer cells
Cited by: 21
Author(s): Marie-Ange Djeungoue-Petga, Olivier Lurette, Stéphanie Jean, Geneviève Hamel-Côté, Rebeca Martín-Jiménez, Marine Bou, Astrid Cannich, Patrick Roy, Étienne Hébert-Chatelain
Software Mentions: 1
Published: almost 5 years ago

10.1038/cddis.2014.489

Characterization of novel markers of senescence and their prognostic potential in cancer
Cited by: 172
Author(s): Mohammad Althubiti, Larissa Lezina, Samantha Carrera, Rebekah Jukes-Jones, Susan Giblett, Alexey V. Antonov, Nikolai A. Barlev, Gerald Saldanha, Catrin Pritchard, Kelvin Cain, Salvador Macip
Software Mentions: 1
Published: about 10 years ago

10.1038/s41419-021-03569-z

An interaction between PRRT2 and Na+/K+ ATPase contributes to the control of neuronal excitability
Cited by: 12
Author(s): Bruno Sterlini, Alessandra Romei, Chiara Parodi, Davide Aprile, Michele Oneto, Anita Aperia, Pierluigi Valente, Flavia Valtorta, Anna Fassio, Pietro Baldelli, Fabio Benfenati, Anna Corradi
Software Mentions: 1
Published: over 3 years ago

10.1038/s41420-019-0185-3

CTDP1 regulates breast cancer survival and DNA repair through BRCT-specific interactions with FANCI
Cited by: 13
Author(s): Wen Feng Hu, Kimiko L. Krieger, Dragana Lagundžin, Xueli Li, Ronald S. Cheung, Toshiyasu Taniguchi, Keith R. Johnson, Tadayoshi Bessho, Alvaro N.A. Monteiro, Nicholas T. Woods
Software Mentions: 1
Published: over 5 years ago

10.1038/cddiscovery.2017.10

Galectin-1 inhibition attenuates profibrotic signaling in hypoxia-induced pulmonary fibrosis
Cited by: 29
Author(s): Jaymin J. Kathiriya, Niyati Nakra, Jenna Nixon, Puja S Patel, Vijay Vaghasiya, Ahmed A. Alhassani, Zhi Tian, Diane Allen‐Gipson, Vrushank Davé
Software Mentions: 1
Published: over 7 years ago

10.1038/celldisc.2015.25

Senataxin controls meiotic silencing through ATR activation and chromatin remodeling
Cited by: 27
Author(s): Abrey J. Yeo, Olivier J. Bécherel, John Luff, Mark E. Graham, Derek J. Richard, Martin F. Lavin
Software Mentions: 1
Published: about 9 years ago

10.1038/s41421-018-0071-9

The metacaspase Yca1 maintains proteostasis through multiple interactions with the ubiquitin system
Cited by: 14
Author(s): Amit Shrestha, Steve Brunette, William L. Stanford, Lynn A. Megeney
Software Mentions: 1
Published: almost 6 years ago

10.1111/j.1462-5822.2011.01582.x

Activation of a PAK-MEK signalling pathway in malaria parasite-infected erythrocytes
Cited by: 66
Author(s): Audrey Sicard, Jean-Phillipe Semblat, Caroline Doerig, Romain Hamelin, Marc Moniatte, Dominique Dorin‐Semblat, Julie A. Spicer, Anubhav Srivastava, Silke Retzlaff, Volker Heussler, Andrew P. Waters, Christian Doerig
Software Mentions: 1
Published: over 13 years ago

10.1111/cmi.13027

<scp><i>Eimeria tenella</i>ROP</scp>kinase<scp>EtROP1</scp>induces G0/G1 cell cycle arrest and inhibits host cell apoptosis
Cited by: 21
Author(s): Mamadou Diallo, Alix Sausset, Audrey Gnahoui‐David, Adeline Ribeiro E Silva, Aurélien Brionne, Yves Le Vern, Françoise Bussière, Julie Tottey, Sonia Lacroix‐Lamandé, Fabrice Laurent, Anne Silvestre
Software Mentions: 1
Published: over 5 years ago

10.1007/s00018-019-03267-2

Toxoplasma gondii ROP16 kinase silences the cyclin B1 gene promoter by hijacking host cell UHRF1-dependent epigenetic pathways
Cited by: 12
Author(s): Marcela Sabou, Cécile Doderer-Lang, Caroline Leyer, Ana Konjic, Sophie Kubina, Sarah Lennon, Olivier Rohr, Stéphane Viville, Sarah Cianférani, Ermanno Candolfi, Alexander W. Pfaff, Julie Brunet
Software Mentions: 1
Published: about 5 years ago

10.33594/000000164

A Novel Probe for Spliceosomal Proteins that Induces Autophagy and Death of Melanoma Cells Reveals New Targets for Melanoma Drug Discovery
Cited by: 12
Author(s): Manikandan Palrasu, Anna M. Knapinska, Juan Diez, Lyndsay Smith, Travis LaVoi, Marc A. Giulianotti, Richard A. Houghten, Gregg B. Fields, Dmitriy Minond
Software Mentions: 1
Published: about 5 years ago

10.1111/cpr.12853

The up‐regulation of NDRG1 by HIF counteracts the cancer‐promoting effect of HIF in VHL‐deficient clear cell renal cell carcinoma
Cited by: 10
Author(s): Zhengyan Zhang, Shilong Zhang, Hui‐Ling Chen, Yuqin Mao, Zhan‐Ming Li, Chao‐Yue Kong, Bing Han, Jin Zhang, Yonghui Chen, Wei Xue, Wei Zhai, Li‐Shun Wang
Software Mentions: 1
Published: over 4 years ago

10.1016/j.cellsig.2020.109632

Characterisation of the biochemical and cellular roles of native and pathogenic amelogenesis imperfecta mutants of FAM83H
Cited by: 5
Author(s): Theresa Tachie-Menson, Ana Gázquez-Gutiérrez, Luke J. Fulcher, Thomas Macartney, Nicola T. Wood, Joby Varghese, Robert Gourlay, Renata Soares, Gopal P. Sapkota
Software Mentions: 1
Published: over 4 years ago

10.3390/cells10081854

Understanding Cervical Cancer through Proteomics
Cited by: 22
Author(s): Fátima Martínez-Rodríguez, Jared E. Limones-González, Brenda Mendoza-Almanza, Edgar Esparza‐Ibarra, Perla Gallegos-Flores, Jorge Luis Ayala-Luján, Susana Godina-González, Eva Salinas, Gretel Mendoza‐Almanza
Software Mentions: 1
Published: over 3 years ago

10.3390/cells10082120

Oleuropein Activates Neonatal Neocortical Proteasomes, but Proteasome Gene Targeting by AAV9 Is Variable in a Clinically Relevant Piglet Model of Brain Hypoxia-Ischemia and Hypothermia
Cited by: 2
Author(s): Nagat El Demerdash, May Chen, Caitlin E. O’Brien, Shawn Adams, Ewa Kulikowicz, Lee J. Martin, Jennifer K. Lee
Software Mentions: 1
Published: over 3 years ago

10.3390/cells8101115

CPT1A Supports Castration-Resistant Prostate Cancer in Androgen-Deprived Conditions
Cited by: 22
Author(s): Molishree Joshi, Gergana E Stoykova, Maren Salzmann-Sullivan, Monika Dzieciątkowska, Lauren Liebman, Gagan Deep, Isabel R. Schlaepfer
Software Mentions: 1
Published: about 5 years ago

10.3390/cells9010210

Hippocampal Neurogenesis Is Enhanced in Adult Tau Deficient Mice
Cited by: 17
Author(s): Marangelie Criado‐Marrero, Jonathan J. Sabbagh, Margaret R. Jones, Dale Chaput, Chad A. Dickey, Laura J. Blair
Software Mentions: 1
Published: almost 5 years ago

10.3390/cells9071672

MRIP Regulates the Myosin IIA Activity and DDR1 Function to Enable Collagen Tractional Remodeling
Cited by: 7
Author(s): Nuno M. Coelho, Andrew Wang, Petar Petrovic, Yongqiang Wang, Lionel Wilson, Christopher A. McCulloch
Software Mentions: 1
Published: over 4 years ago

10.3390/cells9010153

Network of Interactions between ZIKA Virus Non-Structural Proteins and Human Host Proteins
Cited by: 19
Author(s): Volha A. Golubeva, Thales C. Nepomuceno, Giuliana De Gregoriis, Rafael D. Mesquita, Xueli Li, Sweta Dash, Patrícia P. Garcez, Guilherme Suarez‐Kurtz, Victoria Izumi, John M. Koomen, Marcelo A. Carvalho, Alvaro N.A. Monteiro
Software Mentions: 1
Published: almost 5 years ago

10.1093/texcom/tgaa096

Behavioral Deficits in Mice with Postnatal Disruption of Ndel1 in Forebrain Excitatory Neurons: Implications for Epilepsy and Neuropsychiatric Disorders
Cited by: 4
Author(s): Cezar Gavrilovici, Yulan Jiang, Ivana Kiroski, Toni-Lee Sterley, Milène Vandal, Jaideep S. Bains, Sang Ki Park, Jong M. Rho, G. Campbell Teskey, Minh Dang Nguyen
Software Mentions: 1
Published: almost 4 years ago

10.1186/s41016-020-00190-5

Urinary biomarker discovery in gliomas using mass spectrometry-based clinical proteomics
Cited by: 18
Author(s): Jianhuang Wu, Jun Zhang, Jing Wei, Yuanli Zhao, Youhe Gao
Software Mentions: 1
Published: over 4 years ago

10.1186/2046-2530-3-2

Reduction of meckelin leads to general loss of cilia, ciliary microtubule misalignment and distorted cell surface organization
Cited by: 18
Author(s): Tyler Picariello, Megan S. Valentine, Junji Yano, Judith Van Houten
Software Mentions: 1
Published: almost 11 years ago

10.1161/CIRCULATIONAHA.116.023381

Extracellular Matrix Proteomics Reveals Interplay of Aggrecan and Aggrecanases in Vascular Remodeling of Stented Coronary Arteries
Cited by: 70
Author(s): Gonca Suna, Wojciech Wojakowski, Magnus Lynch, Javier Barallobre-Barreiro, Xiaoke Yin, Ursula Mayr, Ferheen Baig, Ruifang Lu, Marika Fava, Robert Hayward, Chris Molenaar, Stephen J. White, Tomasz Roleder, Krzysztof Milewski, Paweł Gąsior, Piotr P. Buszman, Paweł Buszman, Marjan Jahangiri, Catherine M. Shanahan, Jonathan Hill, Manuel Mayr
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12014-015-9091-8

A proteomic profile of synoviocyte lesions microdissected from formalin-fixed paraffin-embedded synovial tissues of rheumatoid arthritis
Cited by: 16
Author(s): Junji Hayashi, Makoto Kihara, Harubumi Kato, Toshihide Nishimura
Software Mentions: 1
Published: over 9 years ago

10.1186/s12014-015-9085-6

Comparative proteomic analysis of hypertrophic chondrocytes in osteoarthritis
Cited by: 47
Author(s): Konstantinos C. Tsolis, Ekaterini S. Bei, Ioanna V. Papathanasiou, F. Kostopoulou, Vasiliki Gkretsi, K. Kalantzaki, Konstantinos N. Malizos, Michalis Zervakis, Aspasia Tsezou, Anastassios Economou
Software Mentions: 1
Published: over 9 years ago

10.1186/1559-0275-9-2

Characterization of the seminal plasma proteome in men with prostatitis by mass spectrometry
Cited by: 33
Author(s): Daniel J. Kagedan, Irene Lecker, Ihor Batruch, Christopher Smith, Ilia Kaploun, Kirk Lo, Ethan Grober, Eleftherios P. Diamandis, Keith Jarvi
Software Mentions: 1
Published: almost 13 years ago

10.1186/1559-0275-11-30

A feasibility study to identify proteins in the residual Pap test fluid of women with normal cytology by mass spectrometry-based proteomics
Cited by: 14
Author(s): Kristin L.M. Boylan, Somaieh Afiuni-Zadeh, Melissa A. Geller, Kayla Hickey, Timothy J. Griffin, Stefan E. Pambuccian, Amy P.N. Skubitz
Software Mentions: 1
Published: over 10 years ago

10.1186/s12014-017-9154-0

The serum protein responses to treatment with Xiaoke Pill and Glibenclamide in type 2 diabetes patients
Cited by: 6
Author(s): Xiuying Zhang, Hui Sun, Sanjoy K. Paul, Quanhui Wang, Xiaomin Lou, Guixue Hou, Bo Wen, Linong Ji, Siqi Liu
Software Mentions: 1
Published: over 7 years ago

10.1186/1559-0275-11-19

Disrupting KATP channels diminishes the estrogen-mediated protection in female mutant mice during ischemia-reperfusion
Cited by: 20
Author(s): Jianjiong Gao, Dong Xu, Grzegorz Sabat, Héctor H. Valdivia, Wei Xu, Nian‐Qing Shi
Software Mentions: 1
Published: over 10 years ago

10.1186/s12014-020-09309-3

Evaluation of the potential of Pap test fluid and cervical swabs to serve as clinical diagnostic biospecimens for the detection of ovarian cancer by mass spectrometry-based proteomics
Cited by: 7
Author(s): Kristin L.M. Boylan, Somaieh Afiuni-Zadeh, Melissa A. Geller, Peter A. Argenta, Timothy J. Griffin, Amy P.N. Skubitz
Software Mentions: 1
Published: almost 4 years ago

10.1186/1559-0275-12-4

Impact of precise modulation of reactive oxygen species levels on spermatozoa proteins in infertile men
Cited by: 40
Author(s): Ahmet Ayaz, Ashok Agarwal, Rakesh Sharma, Mohamed Arafa, Haitham Elbardisi, Zhihong Cui
Software Mentions: 1
Published: almost 10 years ago

10.1186/1559-0275-11-40

Proteomic analysis of human placental syncytiotrophoblast microvesicles in preeclampsia
Cited by: 75
Author(s): Sonia Baig, Narasimhan Kothandaraman, Jayapal Manikandan, Rong Li, Kim Huey Ee, Jeffrey Hill, Chin Wee Lai, Wan Yu Tan, Felicia Yeoh, Anita Sugam Kale, Lin Su, Arijit Biswas, S Vasoo, Mahesh Choolani
Software Mentions: 1
Published: about 10 years ago

10.1186/1559-0275-10-1

Proteomic analysis of ERK1/2-mediated human sickle red blood cell membrane protein phosphorylation
Cited by: 15
Author(s): Erik J. Soderblom, J. Will Thompson, Eric M. Schwartz, Edward Chiou, Laura G. Dubois, M. Arthur Moseley, Rahima Zennadi
Software Mentions: 1
Published: almost 12 years ago

10.1186/1559-0275-11-13

Deciphering the ovarian cancer ascites fluid peptidome
Cited by: 34
Author(s): Anand K. Bery, Felix Leung, Christopher R. Smith, Eleftherios P. Diamandis, Vathany Kulasingam
Software Mentions: 1
Published: over 10 years ago

10.1186/s12014-015-9094-5

Comparative proteomic network signatures in seminal plasma of infertile men as a function of reactive oxygen species
Cited by: 44
Author(s): Ashok Agarwal, Ahmet Ayaz, Luna Samanta, Rakesh Sharma, Mourad Assidi, Adel M. Abuzenadah, Edmund Sabanegh
Software Mentions: 1
Published: about 9 years ago

10.1186/1559-0275-8-13

Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery
Cited by: 13
Author(s): Joel A. Kooren, Nelson L. Rhodus, Chuanning Tang, Pratik Jagtap, Bryan J Horrigan, Timothy J. Griffin
Software Mentions: 1
Published: about 13 years ago

10.1186/s12014-020-09308-4

Identification of differentially expressed proteins and clinicopathological significance of HMGB2 in cervical cancer
Cited by: 2
Author(s): Xiao Han, Siyi Zhong, Pengnan Zhang, Yanmei Liu, Sangsang Shi, Congquan Wu, Shujun Gao
Software Mentions: 1
Published: almost 4 years ago

10.1186/1559-0275-10-5

Semiquantitative proteomic analysis of human hippocampal tissues from Alzheimer’s disease and age-matched control brains
Cited by: 49
Author(s): Ilijana Begcevic, Hari Kosanam, Eduardo Martínez‐Morillo, Apostolos Dimitromanolakis, Phedias Diamandis, Uroš Kuzmanov, Lili‐Naz Hazrati, Eleftherios P. Diamandis
Software Mentions: 1
Published: over 11 years ago

10.1038/s42003-021-02258-z

Macropinocytosis requires Gal-3 in a subset of patient-derived glioblastoma stem cells
Cited by: 12
Author(s): Laetitia Seguin, Soline Odouard, Francesca Corlazzoli, S. Haddad, Laurine Moindrot, Marta Calvo Tardón, Mayra Yebra, Alexey Koval, Eliana Marinari, Viviane Bes, Alexandre Guérin, Mathilde Allard, Sten Ilmjärv, Vladimir L. Katanaev, Paul R Walker, Karl Heinz Krause, Valérie Dutoit, Jann N. Sarkaria, Pierre Yves Dietrich, Érika Cosset
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-021-02302-y

Reduced C9orf72 function leads to defective synaptic vesicle release and neuromuscular dysfunction in zebrafish
Cited by: 24
Author(s): Zoé Butti, Yingzhou Edward Pan, Jean Giacomotto, Shunmoogum A. Patten
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-021-02054-9

ARP-T1-associated Bazex–Dupré–Christol syndrome is an inherited basal cell cancer with ciliary defects characteristic of ciliopathies
Cited by: 6
Author(s): Hyun‐Sook Park, Eirini Papanastasi, Gabriela Blanchard, Elena Chiticariu, Daniel Bachmann, Giuseppe Battaglia, Fanny Morice‐Picard, P. Vabres, Asma Smahi, Marcel Huber, Christine Pich-Bavastro, Daniel Hohl
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-020-1102-2

ATM-associated signalling triggers the unfolded protein response and cell death in response to stress
Cited by: 17
Author(s): Yuka Hotokezaka, Ikuo Katayama, Takashi Nakamura
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-021-02066-5

CellectSeq: In silico discovery of antibodies targeting integral membrane proteins combining in situ selections and next-generation sequencing
Cited by: 6
Author(s): Abdellali Kelil, Eugenio Gallo, Sunandan Banerjee, Jarrett Adams, Sachdev S. Sidhu
Software Mentions: 1
Published: over 3 years ago

10.1038/s42003-019-0313-x

Quantitative intrinsic auto-cathodoluminescence can resolve spectral signatures of tissue-isolated collagen extracellular matrix
Cited by: 7
Author(s): Marcin Zieliński, Elif Vardar, Ganesh Vythilingam, Eva Engelhardt, Jeffrey A. Hubbell, Peter Frey, Hans M. Larsson
Software Mentions: 1
Published: almost 6 years ago

10.1038/s42003-019-0598-9

Alpha-synuclein stepwise aggregation reveals features of an early onset mutation in Parkinson’s disease
Cited by: 79
Author(s): Guilherme A. P. de Oliveira, Jerson L. Silva
Software Mentions: 1
Published: about 5 years ago

10.1038/s42003-020-0851-2

Sjögren syndrome/scleroderma autoantigen 1 is a direct Tankyrase binding partner in cancer cells
Cited by: 5
Author(s): Harmonie Perdreau‐Dahl, Cinzia Progida, Stefan J Barfeld, Hanne Guldsten, Bernd Thiede, Magnus Ø. Arntzen, Oddmund Bakke, Ian G. Mills, Stefan Krauß, J. Preben Morth
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-020-1092-0

STK11 (LKB1) missense somatic mutant isoforms promote tumor growth, motility and inflammation
Cited by: 17
Author(s): Paula Granado-Martínez, Sara García-Ortega, Elena González‐Sánchez, Kimberley McGrail, Rafael Selgas, Judit Grueso, R. Sánchez Gil, Neia Naldaiz-Gastesi, Ana Carolina Rhodes, Javier Hernández‐Losa, Berta Ferrer, Françesc Canals, Josep Villanueva, Olga Méndez, Sergio Espinosa-Gil, José M. Lizcano, Eva Muñoz‐Couselo, Vicenç García-Patos, Juán A. Recio
Software Mentions: 1
Published: over 4 years ago

Projects: pypi: Scaffold

Papers Mentioning Scaffold 1,866