pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1186/2043-9113-1-23

Preferential expression of potential markers for cancer stem cells in large cell neuroendocrine carcinoma of the lung. An FFPE proteomic study
Cited by: 24
Author(s): Masatoshi Nomura, Tetsuya Fukuda, Kiyonaga Fujii, Takeshi Kawamura, Hiromasa Tojo, Makoto Kihara, Yoshio Bando, Adi F. Gazdar, Masahiro Tsuboi, Hisashi Oshiro, Toshitaka Nagao, Tetsuya Ohira, Norihiko Ikeda, Noriko Gotoh, Harubumi Kato, György Markó-Varga, Toshihide Nishimura
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0111160

Correction: SecDF as Part of the Sec-Translocase Facilitates Efficient Secretion of Bacillus cereus Toxins and Cell Wall-Associated Proteins
Cited by: 0
Author(s): NULL AUTHOR_ID
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0013938

Portrait of a Pathogen: The Mycobacterium tuberculosis Proteome In Vivo
Cited by: 180
Author(s): Nicole A. Kruh, JoLynn Troudt, Angelo A. Izzo, Jessica E. Prenni, Karen M. Dobos
Software Mentions: 1
Published: about 15 years ago

10.1371/journal.pone.0050929

Retinal Glycoprotein Enrichment by Concanavalin A Enabled Identification of Novel Membrane Autoantigen Synaptotagmin-1 in Equine Recurrent Uveitis
Cited by: 13
Author(s): Margarete E. Swadzba, Stefanie M. Hauck, Hassan Y. Naim, Barbara Amann, Cornelia A. Deeg
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0077331

Mutation in Integrin-Linked Kinase (ILKR211A) and Heat-Shock Protein 70 Comprise a Broadly Cardioprotective Complex
Cited by: 13
Author(s): Alexandra Traister, Mark A. Walsh, Shabana Aafaqi, Ming-Liang Lu, Xiaojing Dai, Mark R. Henkleman, Abdul Momen, Yu Quing Zhou, Mansoor Husain, Sara Arab, Sara Piran, Gregory E. Hannigan, John G. Coles
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0049021

Identification of Proteins Sensitive to Thermal Stress in Human Neuroblastoma and Glioma Cell Lines
Cited by: 24
Author(s): Guilian Xu, Stanley M. Stevens, Firas Kobiessy, Hilda Brown, Scott McClung, Mark S. Gold, David R. Borchelt
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0018302

The Ccr4-Not Complex Interacts with the mRNA Export Machinery
Cited by: 48
Author(s): Shana C. Kerr, Nowel Azzouz, Stephen M. Fuchs, Martine A. Collart, Brian D. Strahl, Anita H. Corbett, R. Nicholas Laribee
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0153560

Differential Expression of Vitreous Proteins in Young and Mature New Zealand White Rabbits
Cited by: 12
Author(s): Ying Liu, Rachida Bouhenni, Craig Dufresne, Richard D. Semba, Deepak P. Edward
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0137243

Differential Subcellular Localization of Leishmania Alba-Domain Proteins throughout the Parasite Development
Cited by: 33
Author(s): Aurélien Dupé, Carole Dumas, Barbara Papadopoulou
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0204673

N-dodecanoyl-homoserine lactone influences the levels of thiol and proteins related to oxidation-reduction process in Salmonella
Cited by: 11
Author(s): Felipe Alves de Almeida, Deisy Guimarães Carneiro, Tiago Antônio de Oliveira Mendes, Edvaldo Barros, Uelinton Manoel Pinto, Leandro Licursi de Oliveira, Maria Cristina Dantas Vanetti
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0088983

Photo-Activated Psoralen Binds the ErbB2 Catalytic Kinase Domain, Blocking ErbB2 Signaling and Triggering Tumor Cell Apoptosis
Cited by: 25
Author(s): Wenle Xia, David M. Gooden, Leihua Liu, Sumin Zhao, Erik J. Soderblom, Eric J. Toone, Wayne F. Beyer, Harold Walder, Neil L. Spector
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0029210

Phosphorylation and Activation of the Plasma Membrane Na+/H+ Exchanger (NHE1) during Osmotic Cell Shrinkage
Cited by: 13
Author(s): Robert R. Rigor, Catalina Damoc, Brett S. Phinney, Peter M Cala
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0094089

Proteomics of Secretory and Endocytic Organelles in Giardia lamblia
Cited by: 34
Author(s): Petra B. Wampfler, Vinko Toševski, Paolo Nanni, Cornelia Spycher, Adrian B. Hehl
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0065364

CD9-Positive Microvesicles Mediate the Transfer of Molecules to Bovine Spermatozoa during Epididymal Maturation
Cited by: 99
Author(s): Julieta Caballero, Gilles Frenette, Clémence Belleannée, Robert Sullivan
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0238591

Cancer cell line-specific protein profiles in extracellular vesicles identified by proteomics
Cited by: 20
Author(s): Eduarda Guerreiro, Reidun Øvstebø, Bernd Thiede, Daniela Elena Costea, Tine M. Søland, Hilde Kanli Galtung
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0118725

Comparative Genomics of Cluster O Mycobacteriophages
Cited by: 21
Author(s): Steven G. Cresawn, Welkin H. Pope, Deborah Jacobs-Sera, Charles A. Bowman, Daniel A. Russell, Rebekah M. Dedrick, Tamarah L. Adair, Kirk R. Anders, Sarah Ball, David Bollivar, Caroline A. Breitenberger, Sandra H. Burnett, Kristen Butela, Deanna Byrnes, Sarah Carzo, Kathleen Cornely, Trevor Cross, Richard L. Daniels, David Dunbar, A. M. Findley, Chris R. Gissendanner, Urszula Golebiewska, Grant A. Hartzog, J. R. Hatherill, Lee E. Hughes, Chernoh S. Jalloh, Carla De Los Santos, Kevin Ekanem, Sphindile L. Khambule, Rodney A. King, Christina King‐Smith, Karen K. Klyczek, Greg P. Krukonis, Christian Laing, Jonathan S. Lapin, A. Javier Lopez, Sipho M. Mkhwanazi, Sally D. Molloy, Deborah Moran, Vanisha Munsamy, Eddie Pacey, Ruth Plymale, Marianne K. Poxleitner, Nathan S. Reyna, Joel F. Schildbach, Joseph Stukey, Sarah E. Taylor, Vassie C. Ware, Amanda L. Wellmann, Daniel E. Westholm, Donna Wodarski, Michelle Zajko, Thabiso S. Zikalala, Roger W. Hendrix, Graham F. Hatfull
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0133195

Heterogeneity of Borrelia burgdorferi Sensu Stricto Population and Its Involvement in Borrelia Pathogenicity: Study on Murine Model with Specific Emphasis on the Skin Interface
Cited by: 21
Author(s): Arthur B. Kern, Gilles Schnell, Quentin Bernard, Amandine Bœuf, B. Jaulhac, Elody Collin, Cathy Barthel, Laurence Ehret‐Sabatier, Nathalie Boulanger
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0079283

Proteomic Analysis of the Extracellular Matrix Produced by Mesenchymal Stromal Cells: Implications for Cell Therapy Mechanism
Cited by: 41
Author(s): Adam Harvey, Ten‐Yang Yen, Irina Aizman, Ciara C. Tate, Casey Case
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0004417

Putative Nanobacteria Represent Physiological Remnants and Culture By-Products of Normal Calcium Homeostasis
Cited by: 89
Author(s): John Ding‐E Young, Jan Martel, Lena Young, Chia-Huang Wu, Andrew Young, David Young
Software Mentions: 1
Published: almost 17 years ago

10.1371/journal.pone.0170285

Proteomic Analysis of Kveim Reagent Identifies Targets of Cellular Immunity in Sarcoidosis
Cited by: 39
Author(s): Christian Eberhardt, Muhunthan Thillai, Robert Parker, Nazneen Siddiqui, Lee Potiphar, Robert Goldin, John F. Timms, Adrian Wells, Onn Min Kon, Melissa Wickremasinghe, Donald Mitchell, Mark E. Weeks, Ajit Lalvani
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0138508

SNAREs Interact with Retinal Degeneration Slow and Rod Outer Segment Membrane Protein-1 during Conventional and Unconventional Outer Segment Targeting
Cited by: 25
Author(s): Rahel Zulliger, Shannon M. Conley, Maggie L. Mwoyosvi, Michael W. Stuck, Seifollah Azadi, Muna I. Naash
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0151254

Comparative Proteomic Identification of Mature and Immature Sperm in the Catfish Cranoglanis bouderius
Cited by: 5
Author(s): Jintao Chen, Aiguo Zhou, Shaolin Xie, Wang Chao, Zijun Lv
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0128585

Mitochondrial Dysfunction in Human Leukemic Stem/Progenitor Cells upon Loss of RAC2
Cited by: 16
Author(s): Marta E. Capala, Henny Maat, Francesco Bonardi, Vincent van den Boom, Jeroen Kuipers, Edo Vellenga, Ben N. G. Giepmans, Jan Jacob Schuringa
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0159867

11-Ketotestosterone and 11-Ketodihydrotestosterone in Castration Resistant Prostate Cancer: Potent Androgens Which Can No Longer Be Ignored
Cited by: 112
Author(s): Elzette Pretorius, Donita Africander, Maré Vlok, Meghan S. Perkins, Jonathan L. Quanson, Karl-Heinz Storbeck
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0064134

Tissue Specificity of Decellularized Rhesus Monkey Kidney and Lung Scaffolds
Cited by: 128
Author(s): Karina H. Nakayama, C. Chang I. Lee, Cynthia A. Batchelder, Alice F. Tarantal
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0180409

Differential protein expression profile in the hypothalamic GT1-7 cell line after exposure to anabolic androgenic steroids
Cited by: 0
Author(s): Freddyson J. Martínez-Rivera, Juliana Pérez-Laspiur, Maria Elisa Santiago-Gascot, Abner G. Alemán-Reyes, Emanuel García-Santiago, Yolanda Rodríguez-Pérez, Cristhian Calo‐Guadalupe, Inelia Otero-Pagán, Roxsana N. Ayala-Pagán, Magdiel Martínez, Yisel M. Cantres-Rosario, Loyda M. Meléndez, Jennifer L. Barreto-Estrada
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0085796

pTyr421 Cortactin Is Overexpressed in Colon Cancer and Is Dephosphorylated by Curcumin: Involvement of Non-Receptor Type 1 Protein Tyrosine Phosphatase (PTPN1)
Cited by: 30
Author(s): Vijayababu M. Radhakrishnan, Pawel Kojs, Gavin Young, Rajalakshmy Ramalingam, Bhumasamudram Jagadish, Eugene A. Mash, Jesse D. Martinez, Fayez K. Ghishan, Pawel R. Kiela
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0189307

EphrinA1-Fc attenuates myocardial ischemia/reperfusion injury in mice
Cited by: 15
Author(s): Augustin DuSablon, Justin C. Parks, K'Shylah S Whitehurst, Heather K Estes, R. Christopher Chase, Eleftherios Vlahos, Uma Sharma, David Wert, Jitka A. I. Virag
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0142082

Quantitative Proteomics Analysis of the Hepatitis C Virus Replicon High-Permissive and Low-Permissive Cell Lines
Cited by: 9
Author(s): Fei Ye, Zhongshuai Xin, Wei Han, Jingjing Fan, Bin Yin, Shuzhen Wu, Wei Yang, Jing Yuan, Boqin Qiang, Wei Sun, Xiaozhong Peng
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0074011

Quantitative Evaluation of the Mitochondrial Proteomes of Drosophila melanogaster Adapted to Extreme Oxygen Conditions
Cited by: 20
Author(s): Songyue Yin, Jin Xue, Hui Sun, Bo Wen, Quanhui Wang, Guy Perkins, Haifeng Zhao, Mark H. Ellisman, Yu‐hsin Hsiao, Yin Liang, Yingying Xie, Guixue Hou, Jian Zi, Liang Lin, Gabriel G. Haddad, Dan Zhou, Siqi Liu
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0021035

A Ribosomal Misincorporation of Lys for Arg in Human Triosephosphate Isomerase Expressed in Escherichia coli Gives Rise to Two Protein Populations
Cited by: 14
Author(s): Beatriz Aguirre, Miguel Costas, Nallely Cabrera, Guillermo Mendoza‐Hernández, Donald L. Helseth, Paulette Fernández, Marietta Tuena de Gómez‐Puyou, Ruy Pérez‐Montfort, Alfredo Torres‐Larios, Armando Gómez Puyou
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0128240

Biochemical and Proteomic Analysis of Ubiquitination of Hsc70 and Hsp70 by the E3 Ligase CHIP
Cited by: 23
Author(s): Sarah E. Soss, Kristie L. Rose, Salisha Hill, Sophie Jouan, Walter J. Chazin
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0071874

New Insight into Benign Tumours of Major Salivary Glands by Proteomic Approach
Cited by: 19
Author(s): Elena Donadio, Laura Giusti, Veronica Seccia, Federica Ciregia, Ylenia Da Valle, Iacopo Dallan, Tiziana Ventroni, Gino Giannaccini, Stefano Sellari–Franceschini, Antonio Lucacchini
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0050517

Proteomic Approaches Identify Members of Cofilin Pathway Involved in Oral Tumorigenesis
Cited by: 23
Author(s): Giovana Mussi Polachini, Lays Martin Sobral, A.M.C. Mercante, Adriana Franco Paes Leme, Flávia Caló Aquino Xavier, Tiago Henrique, Douglas Magno Guimarães, Alessandra Vidotto, Érica Erina Fukuyama, J.F Gois-filho, Patrı́cia Maluf Cury, Otávio Alberto Curioni, Pedro Michaluart, Adriana M. A. Silva, Victor Wunsch‐Filho, Fábio Daumas Nunes, Andréia Machado Leopoldino, Eloíza H. Tajara
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0123282

Magnetic Cell Labeling of Primary and Stem Cell-Derived Pig Hepatocytes for MRI-Based Cell Tracking of Hepatocyte Transplantation
Cited by: 5
Author(s): Dwayne R. Roach, Wesley M. Garrett, G. Rickey Welch, Thomas J. Caperna, Neil C. Talbot, Erik M. Shapiro
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0242919

High levels of glucose alter Physcomitrella patens metabolism and trigger a differential proteomic response
Cited by: 0
Author(s): Alejandra Chamorro-Flores, Axel Tiessen-Favier, Josefat Gregorio-Jorge, Miguel Ángel Villalobos-López, Ángel Arturo Guevara-García, Melina López-Meyer, Analilia Arroyo-Becerra
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0017270

Interactions between the Nse3 and Nse4 Components of the SMC5-6 Complex Identify Evolutionarily Conserved Interactions between MAGE and EID Families
Cited by: 47
Author(s): Jessica J. R. Hudson, Kateřina Bednářová, Lucie Kozáková, Chunyan Liao, Marc Guérineau, Rita Colnaghi, Susanne Vidot, Jaromı́r Marek, Sreenivas Reddy Bathula, Alan R. Lehmann, Jan Paleček
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0090615

Nanog1 in NTERA-2 and Recombinant NanogP8 from Somatic Cancer Cells Adopt Multiple Protein Conformations and Migrate at Multiple M.W Species
Cited by: 13
Author(s): Bigang Liu, Mark Badeaux, Grace Choy, Dhyan Chandra, Irvin Shen, Collene Jeter, Kiera Rycaj, Chia-Fang Lee, Maria D. Person, Can Liu, Yueping Chen, Jianjun Shen, Sung Yun Jung, Jun-jun Qin, Dean G. Tang
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0037984

Cycling of Etk and Etp Phosphorylation States Is Involved in Formation of Group 4 Capsule by Escherichia coli
Cited by: 24
Author(s): Chen Nadler, Simi Koby, Adi Peleg, Austin C. Johnson, Krishna C. Suddala, Karthik Sathiyamoorthy, Bennett E. Smith, Mark A. Saper, Ilan Rosenshine
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0139829

Proteomics Analysis of Dorsal Striatum Reveals Changes in Synaptosomal Proteins following Methamphetamine Self-Administration in Rats
Cited by: 14
Author(s): Peter Bösch, Lifeng Peng, Bronwyn M. Kivell
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0075355

Distinguishing Ichthyoses by Protein Profiling
Cited by: 30
Author(s): Robert H. Rice, Katie M. Bradshaw, Blythe Durbin‐Johnson, David M. Rocke, Richard A. Eigenheer, Brett S. Phinney, Matthias Schmuth, Robert Gruber
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0033650

Identifying New Therapeutic Targets via Modulation of Protein Corona Formation by Engineered Nanoparticles
Cited by: 88
Author(s): Rochelle R. Arvizo, Karuna Giri, Daniel F. Moyano, Oscar R. Miranda, Benjamin J. Madden, Daniel J. McCormick, Resham Bhattacharya, Vincent M. Rotello, Jean Pierre A. Kocher, Priyabrata Mukherjee
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0049348

Two Adjacent cis-Regulatory Elements Are Required for Ecdysone Response of Ecdysone Receptor (EcR) B1 Transcription
Cited by: 13
Author(s): Hiroyuki Shirai, Manabu Kamimura, Junichi Yamaguchi, Shigeo Imanishi, Takao Kojima, Haruhiko Fujiwara
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0007670

Serum S100A6 Concentration Predicts Peritoneal Tumor Burden in Mice with Epithelial Ovarian Cancer and Is Associated with Advanced Stage in Patients
Cited by: 39
Author(s): Beiyang Wei, Shelley Hoover, Mark M. Ross, Weidong Zhou, Francesco Meani, Jeniffer B. Edwards, Elizabeth I. Spehalski, John I. Risinger, W. Gregory Alvord, Octavio A. Quiñones, Claudio Belluco, Luca Martella, E Campagnutta, Antonella Ravaggi, Rei Ming Dai, Paul K. Goldsmith, Kevin D. Woolard, Sërgio Pecorelli, Lance A. Liotta, Emanuel F. Petricoin, R. Mark Simpson
Software Mentions: 1
Published: about 16 years ago

10.1371/journal.pone.0107664

Antibody-Validated Proteins in Inflamed Islets of Fulminant Type 1 Diabetes Profiled by Laser-Capture Microdissection Followed by Mass Spectrometry
Cited by: 27
Author(s): Yoriko Nishida, Kaoru Aida, Makoto Kihara, Tetsuro Kobayashi
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0052147

New Model of Action for Mood Stabilizers: Phosphoproteome from Rat Pre-Frontal Cortex Synaptoneurosomal Preparations
Cited by: 26
Author(s): María CORENA-Mcleod, Consuelo Walss‐Bass, Alfredo Oliveros, Andres Gordillo Villegas, Carolina Wiesner Ceballos, Cristine Charlesworth, Benjamin J. Madden, Paul J. Linser, Leslie Van Ekeris, Kristin Smith, Elliott Richelson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0075868

Ethanol Metabolism Modifies Hepatic Protein Acylation in Mice
Cited by: 46
Author(s): Kristofer S. Fritz, Michelle Green, Dennis R. Petersen, Matthew D. Hirschey
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0081583

Interaction Network of Proteins Associated with Human Cytomegalovirus IE2-p86 Protein during Infection: A Proteomic Analysis
Cited by: 9
Author(s): Guocheng Du, Mark F. Stinski
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0053179

Comprehensive Histone Phosphorylation Analysis and Identification of Pf14-3-3 Protein as a Histone H3 Phosphorylation Reader in Malaria Parasites
Cited by: 37
Author(s): Eeshita G Dastidar, Kristina Dzeyk, Jeroen Krijgsveld, Nicholas A. Malmquist, Christian Doerig, Artur Scherf, José-Juan Lopez-Rubio
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0091519

Comparative Expression Study of the Endo–G Protein Coupled Receptor (GPCR) Repertoire in Human Glioblastoma Cancer Stem-like Cells, U87-MG Cells and Non Malignant Cells of Neural Origin Unveils New Potential Therapeutic Targets
Cited by: 25
Author(s): Marie Fève, Jean‐Michel Saliou, Maria Zeniou, Sarah Lennon, Christine Carapito, Jihu Dong, Alain Van Dorsselaer, Marie‐Pierre Junier, Hervé Chneiweiss, Sarah Cianférani, Jacques Haiech, Marie‐Claude Kilhoffer
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0186003

Variability in the protein profiles in spermatozoa of two sturgeon species
Cited by: 11
Author(s): Ping Li, Qiwei Wei, Huamei Yue, Chuangju Li, Hao Du, Xinmei Qiao, Zhigang Liu, Qiong Zhou, Qiwei Wei
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0127750

Construction of High Density Sweet Cherry (Prunus avium L.) Linkage Maps Using Microsatellite Markers and SNPs Detected by Genotyping-by-Sequencing (GBS)
Cited by: 73
Author(s): Verónica Guajardo, Simón Solís, Boris Sagredo, Felipe Gainza, Carmen García Muñoz, Ksenija Gašić, Patricio Hinrichsen
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0071620

Genomic and Proteomic Analysis of Schizaphis graminum Reveals Cyclophilin Proteins Are Involved in the Transmission of Cereal Yellow Dwarf Virus
Cited by: 43
Author(s): Cécilia Tamborindeguy, Michael S. Bereman, Stacy L. DeBlasio, David Okeh Igwe, Dawn Smith, Frank F. White, Michael J. MacCoss, Stewart M. Gray, Michelle Cilia
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0154891

The Postpharyngeal Gland: Specialized Organ for Lipid Nutrition in Leaf-Cutting Ants
Cited by: 5
Author(s): Pâmela Décio, Alexsandro Santana Vieira, Nathalia Baptista Dias, Mário Sérgio Palma, Odair Corrêa Bueno
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0133994

Characterization of the Cardiac Overexpression of HSPB2 Reveals Mitochondrial and Myogenic Roles Supported by a Cardiac HspB2 Interactome
Cited by: 11
Author(s): Julianne H. Grose, Kelsey Murphey Langston, Xiaohui Wang, Shayne Squires, Soumyajit Banerjee Mustafi, Whitney Hayes, Jonathan Paul Neubert, Susan K. Fischer, Matthew Fasano, Gina Moore Saunders, Qiang Dai, Elisabeth Christians, E. Douglas Lewandowski, Peipei Ping, Ivor J. Benjamin
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0123841

Biochemical, Transcriptomic and Proteomic Analyses of Digestion in the Scorpion Tityus serrulatus: Insights into Function and Evolution of Digestion in an Ancient Arthropod
Cited by: 27
Author(s): Felipe J. Fuzita, Martijn W. H. Pinkse, José Salvatori Patané, María A. Juliano, Peter Verhaert, Adriana Rios Lopes
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0160660

A Proteomic Approach to Lipo-Chitooligosaccharide and Thuricin 17 Effects on Soybean GerminationUnstressed and Salt Stress
Cited by: 43
Author(s): Sowmyalakshmi Subramanian, Emily Ricci, Alfred Souleimanov, Donald L. Smith
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0048177

Discovery and Targeted LC-MS/MS of Purified Polerovirus Reveals Differences in the Virus-Host Interactome Associated with Altered Aphid Transmission
Cited by: 28
Author(s): Michelle Cilia, Kari A. Peter, Michael S. Bereman, Kevin J. Howe, Tara Fish, Dawn Smith, F. E. Gildow, Michael J. MacCoss, Theodore W. Thannhauser, Stewart M. Gray
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0020725

Nanopods: A New Bacterial Structure and Mechanism for Deployment of Outer Membrane Vesicles
Cited by: 65
Author(s): Ameesha R. Shetty, Shicheng Chen, Elitza I. Tocheva, Grant J. Jensen, William J. Hickey
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0039548

Enzymatic Degradation of PrPSc by a Protease Secreted from Aeropyrum pernix K1
Cited by: 10
Author(s): Marko Šnajder, Tanja Vilfan, Maja Černilec, Ruth Rupreht, Mara Popović, Polona Juntes, Vladka Čurin Šerbec, Nataša Poklar Ulrih
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0075501

Bions: A Family of Biomimetic Mineralo-Organic Complexes Derived from Biological Fluids
Cited by: 40
Author(s): Chia-Huang Wu, Lena Young, David Young, Jan Martel, John Ding‐E Young
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0161035

Identification and Localization of the Cyclic Nucleotide Phosphodiesterase 10A in Bovine Testis and Mature Spermatozoa
Cited by: 6
Author(s): Serge Goupil, Loïze Maréchal, Hassan El Hajj, Marie‐Ève Tremblay, François J. Richard, Pierre Leclerc
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0031532

Comparison of Functional Proteomic Analyses of Human Breast Cancer Cell Lines T47D and MCF7
Cited by: 41
Author(s): Juliette A. Aka, Sheng‐Xiang Lin
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pone.0155724

Peptides in Bronchoalveolar Lavage in Chronic Obstructive Pulmonary Disease
Cited by: 12
Author(s): Chris H. Wendt, Gary L. Nelsestuen, Stephen B. Harvey, Makedonka Gulcev, Matthew D. Stone, Cavan Reilly
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0136707

Absence of sodA Increases the Levels of Oxidation of Key Metabolic Determinants of Borrelia burgdorferi
Cited by: 17
Author(s): Maria D. Esteve-Gassent, Trever C. Smith, Christina M. Small, Derek P. Thomas, J. Seshu
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0129275

Comparative Secretome Analysis of Trichoderma reesei and Aspergillus niger during Growth on Sugarcane Biomass
Cited by: 103
Author(s): Gustavo Pagotto Borin, Camila Cristina Sanchez, Amanda P. De Souza, Eliane Silva de Santana, Aline Tieppo de Souza, Adriana Franco Paes Leme, Fábio M. Squina, Marcos Silveira Buckeridge, Gustavo H. Goldman, Juliana Velasco de Castro Oliveira
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0088744

Quantitative Proteomics Study of Larval Settlement in the Barnacle Balanus amphitrite
Cited by: 28
Author(s): Zhangfan Chen, Huoming Zhang, Hao Wang, Keisuke Matsumura, Yue Him Wong, Timothy Ravasi, Pei‐Yuan Qian
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0009109

Shewanella spp. Genomic Evolution for a Cold Marine Lifestyle and In-Situ Explosive Biodegradation
Cited by: 57
Author(s): J ZHAO, Yinghai Deng, Dominic Manno, Jalal Hawari
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0208520

Quantification of enterohemorrhagic Escherichia coli O157:H7 protein abundance by high-throughput proteome
Cited by: 8
Author(s): Wanderson Marques da Silva, Jinlong Bei, Natalia Amigo, María Pía Valacco, Ariel Fernando Amadío, Qi Zhang, Xiaoli Wu, Ting Yu, Mariano Larzábal, Zhuang Chen, Angel Cataldi
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0177569

PGCA: An algorithm to link protein groups created from MS/MS data
Cited by: 1
Author(s): David Kepplinger, Mandeep Takhar, Mayu Sasaki, Zsuzsanna Hollander, Derek Smith, Bruce M. McManus, W. Robert McMaster, Raymond T. Ng, Gabriela V. Cohen Freue
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0011465

Themis2/ICB1 Is a Signaling Scaffold That Selectively Regulates Macrophage Toll-Like Receptor Signaling and Cytokine Production
Cited by: 31
Author(s): Matthew J. Peirce, Matthew Brook, Nicholas A. Morrice, Robert J. Snelgrove, Shajna Begum, Alessandra Lanfrancotti, Clare A. Notley, Tracy Hussell, Andrew P. Cope, Robin Wait
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0018150

Alpha-COPI Coatomer Protein Is Required for Rough Endoplasmic Reticulum Whorl Formation in Mosquito Midgut Epithelial Cells
Cited by: 14
Author(s): Guoli Zhou, Jun Isoe, W.A. Day, Roger L. Miesfeld
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0107408

Plasma Protein Corona Modulates the Vascular Wall Interaction of Drug Carriers in a Material and Donor Specific Manner
Cited by: 33
Author(s): Daniel J. Sobczynski, Phapanin Charoenphol, Michael J. Heslinga, Peter J. Onyskiw, Katawut Namdee, Alex J. Thompson, Omolola Eniola‐Adefeso
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0025280

Association of Calcineurin with the COPI Protein Sec28 and the COPII Protein Sec13 Revealed by Quantitative Proteomics
Cited by: 22
Author(s): Lukasz Kozubowski, J. Will Thompson, María E. Cárdenas, M. Arthur Moseley, Joseph Heitman
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0127180

The Successful Diagnosis and Typing of Systemic Amyloidosis Using A Microwave-Assisted Filter-Aided Fast Sample Preparation Method and LC/MS/MS Analysis
Cited by: 13
Author(s): Weiyi Sun, Jian Sun, Lili Zou, Kaini Shen, Dingrong Zhong, Daobin Zhou, Wei Sun, Jian Li
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0119335

Recombinant Pvs48/45 Antigen Expressed in E. coli Generates Antibodies that Block Malaria Transmission in Anopheles albimanus Mosquitoes
Cited by: 31
Author(s): Myriam Arévalo‐Herrera, Andrés Vallejo, Kelly Rubiano, Yezid Solarte, Catherin Marín, Alejandro Castellanos, Nora Céspedes
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0130288

Hey bHLH Proteins Interact with a FBXO45 Containing SCF Ubiquitin Ligase Complex and Induce Its Translocation into the Nucleus
Cited by: 8
Author(s): Daniela Salat, Anja Winkler, Henning Urlaub, Manfred Gessler
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0191307

Salivary proteomics of healthy dogs: An in depth catalog
Cited by: 21
Author(s): Sheila M. F. Torres, Eva Furrow, Clarissa Pimentel de Souza, Jennifer L. Granick, Ebbing P. de Jong, Timothy J. Griffin, Xiong Wang
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0148900

Mutagenicity in a Molecule: Identification of Core Structural Features of Mutagenicity Using a Scaffold Analysis
Cited by: 16
Author(s): Keh‐Ying Hsu, Bo‐Han Su, Yi-Shu Tu, Olivia A. Lin, Yufeng J. Tseng
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0116756

Proteomic Analysis of Pure Human Airway Gland Mucus Reveals a Large Component of Protective Proteins
Cited by: 38
Author(s): Nam Soo Joo, Idil A. Evans, Hyung‐Ju Cho, Il Ho Park, John F. Engelhardt, Jeffrey J. Wine
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0187981

Proteomics of Staphylococcus aureus biofilm matrix in a rat model of orthopedic implant-associated infection
Cited by: 26
Author(s): Mei-Guey Lei, Ravi Gupta, Chia Y. Lee
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0242381

Registered report protocol: Quantitative analysis of septin Cdc10-associated proteome in Cryptococcus neoformans
Cited by: 1
Author(s): Stephani Martinez Barrera, Stephanie D. Byrum, Samuel G. Mackintosh, Lukasz Kozubowski
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0213269

Adolescent idiopathic scoliosis associated POC5 mutation impairs cell cycle, cilia length and centrosome protein interactions
Cited by: 21
Author(s): Amani Hassan, Stefan Parent, Hélène Mathieu, Charlotte Zaouter, Sirinart Molidperee, Edward T. Bagu, Soraya Barchi, Isabelle Villemure, Shunmoogum A. Patten, Florina Moldovan
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0142650

Comparison of Different Buffers for Protein Extraction from Formalin-Fixed and Paraffin-Embedded Tissue Specimens
Cited by: 26
Author(s): Kaini Shen, Jian Sun, Xinxin Cao, Daobin Zhou, Jian Li
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0183261

Identification of putative QTLs for seedling stage phosphorus starvation response in finger millet (Eleusine coracana L. Gaertn.) by association mapping and cross species synteny analysis
Cited by: 44
Author(s): Muthusamy Ramakrishnan, S. Antony Ceasar, K. K. Vinod, V. Duraipandiyan, Thumadath Palayullaparambil Ajeesh Krishna, Hari D. Upadhyaya, Naïf Abdullah Al-Dhabi, S. Ignacimuthu
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0038061

Differences in Immunoglobulin Light Chain Species Found in Urinary Exosomes in Light Chain Amyloidosis (AL)
Cited by: 34
Author(s): Marina Ramı́rez-Alvarado, Christopher J. Ward, Bing Huang, Xun Gong, Marie C. Hogan, Benjamin J. Madden, M. Cristine Charlesworth, Nelson Leung
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0095118

Physcomitrella patens Has Kinase-LRR R Gene Homologs and Interacting Proteins
Cited by: 11
Author(s): Yusuke Tanigaki, Kenji Ito, Y. Obuchi, Akiko Kosaka, Katsuyuki T. Yamato, Masahiro Okanami, Mikko Lehtonen, Jari P. T. Valkonen, Motomu Akita
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0081758

Rab GTPase Prenylation Hierarchy and Its Potential Role in Choroideremia Disease
Cited by: 53
Author(s): Monika Köhnke, Christine Delon, Marcus L. Hastie, Uyen Nguyen, Yao‐Wen Wu, Herbert Waldmann, Roger S. Goody, Jeffrey J. Gorman, Kirill Alexandrov
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0179996

Whole transcriptomic and proteomic analyses of an isogenic M. tuberculosis clinical strain with a naturally occurring 15 Kb genomic deletion
Cited by: 6
Author(s): Carla Duncan, Frances Jamieson, JoLynn Troudt, Linda Izzo, Helle Bielefeldt‐Ohmann, Angelo A. Izzo, Carolina Mehaffy
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0094831

Proteomic Analysis of Cattle Tick Rhipicephalus (Boophilus) microplus Saliva: A Comparison between Partially and Fully Engorged Females
Cited by: 136
Author(s): Lucas Tirloni, José Reck, Renata Maria Soares Terra, João Ricardo Martins, Albert Mulenga, Nicholas E. Sherman, Jay W. Fox, John R. Yates, Carlos Termignoni, Antônio Frederico Michel Pinto, Itabajara da Silva Vaz
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0071859

Comparative Proteomics Reveals Novel Components at the Plasma Membrane of Differentiated HepaRG Cells and Different Distribution in Hepatocyte- and Biliary-Like Cells
Cited by: 21
Author(s): Catalina Petrareanu, Alina Macovei, Izabela Sokolowska, Alisa G. Woods, Catalin Lazar, Gabriel Lucian Radu, Costel C. Darie, Norica Branza‐Nichita
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0257338

The effects of fossil taxa, hypothetical predicted ancestors, and a molecular scaffold on pseudoextinction analyses of extant placental orders
Cited by: 2
Author(s): Peggy L. Brady, Mark S. Springer
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0174771

Time- and radiation-dose dependent changes in the plasma proteome after total body irradiation of non-human primates: Implications for biomarker selection
Cited by: 24
Author(s): Stephanie D. Byrum, Marie Schluterman Burdine, Lisa Orr, Samuel G. Mackintosh, Simon Authier, Mylène Pouliot, Martin Hauer‐Jensen, Alan J. Tackett
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0047845

Quantitative Proteomic Analysis of Niemann-Pick Disease, Type C1 Cerebellum Identifies Protein Biomarkers and Provides Pathological Insight
Cited by: 60
Author(s): Stephanie M. Cologna, Xiao Jiang, Peter S. Backlund, Céline Cluzeau, Michelle K. Dail, Nicole M. Yanjanin, Stephan Siebel, Cynthia L. Toth, Hyun Sik Jun, Christopher A. Wassif, Alfred L. Yergey, Forbes D. Porter
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0110443

Rapid Isolation of Extracellular Vesicles from Cell Culture and Biological Fluids Using a Synthetic Peptide with Specific Affinity for Heat Shock Proteins
Cited by: 141
Author(s): Anirban Ghosh, Michelle Davey, Ian C. Chute, Steven G. Griffiths, Scott A. Lewis, Simi Chacko, David A. Barnett, Nicolas Crapoulet, Sébastien Fournier, Andrew P. Joy, Michelle C. Caissie, Amanda D. Ferguson, Mélissa Daigle, Maria‐Victoria Meli, Stephen M. Lewis, Rodney J. Ouellette
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0056780

Systematic Screens for Proteins That Interact with the Mucolipidosis Type IV Protein TRPML1
Cited by: 15
Author(s): Ellen Spooner, Brooke M. McLaughlin, Talya S. Lepow, Tyler Durns, Justin R. Randall, Cameron P. Upchurch, Katherine Miller, Erin M. Campbell, Hanna Fares
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0009075

Comprehensive Identification and Modified-Site Mapping of S-Nitrosylated Targets in Prostate Epithelial Cells
Cited by: 76
Author(s): Ying‐Wai Lam, Yong Yuan, J.E. Isaac, C. V. Suresh Babu, Jarosław Meller, Shuk‐Mei Ho
Software Mentions: 1
Published: almost 16 years ago

10.1371/journal.pone.0074187

The Suppressor of AAC2 Lethality SAL1 Modulates Sensitivity of Heterologously Expressed Artemia ADP/ATP Carrier to Bongkrekate in Yeast
Cited by: 7
Author(s): Monika Wysocka-Kapcińska, Beáta Törőcsik, Lilla Turiák, George Tsaprailis, Cynthia L. David, Andrea Hunt, Károly Vékey, Vera Ádám-Vizi, Róża Kucharczyk, Christos Chinopoulos
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0054942

Identification of GPCR-Interacting Cytosolic Proteins Using HDL Particles and Mass Spectrometry-Based Proteomic Approach
Cited by: 25
Author(s): Ka Young Chung, Peter W. Day, Gisselle Velez-Ruiz, Roger K. Sunahara, Brian K. Kobilka
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0114476

Computational and Experimental Analysis of the Secretome of Methylococcus capsulatus (Bath)
Cited by: 7
Author(s): Stine Indrelid, Geir Mathiesen, Morten Jacobsen, Tor Lea, C Kleiveland
Software Mentions: 1
Published: almost 11 years ago

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