pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0225864

Prolonged fasting followed by refeeding modifies proteome profile and parvalbumin expression in the fast-twitch muscle of pacu (Piaractus mesopotamicus)
Cited by: 5
Author(s): Rafaela Nunes da Silva‐Gomes, Maria Laura Gabriel Kuniyoshi, Bruno Oliveira da Silva Duran, Bruna Tereza Thomazini Zanella, Paula Paccielli Freire, Tassiana Gutierrez de Paula, Bruno Evaristo de Almeida Fantinatti, Rondinelle Artur Simões Salomão, Robson Francisco Carvalho, Lucilene Delazari dos Santos, Maeli Dal-Pai-Silva
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0015960

Histone Variants and Their Post-Translational Modifications in Primary Human Fat Cells
Cited by: 32
Author(s): Åsa Jufvas, Peter Strålfors, Alexander V. Vener
Software Mentions: 1
Published: almost 14 years ago

10.1186/s40478-019-0660-3

The APMAP interactome reveals new modulators of APP processing and beta-amyloid production that are altered in Alzheimer’s disease
Cited by: 20
Author(s): Hermeto Gerber, Sébastien Mosser, Benjamin Boury-Jamot, Michael Stumpe, Alessandra Piersigilli, Christine Goepfert, Jörn Dengjel, Urs Albrecht, Fulvio Magara, Patrick C. Fraering
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0164993

A High-Yield Two-Hour Protocol for Extraction of Human Hair Shaft Proteins
Cited by: 22
Author(s): Sing Ying Wong, Ching Chin Lee, Ali Ashrafzadeh, Sarni Mat Junit, Noor Nazirahanie Abrahim, Onn Haji Hashim
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0028017

Role of Collagens and Perlecan in Microvascular Stability: Exploring the Mechanism of Capillary Vessel Damage by Snake Venom Metalloproteinases
Cited by: 70
Author(s): Teresa Escalante, Natalia Ortiz, Alexandra Rucavado, Eladio Flores Sánchez, Michael Richardson, Jay W. Fox, José Marı́a Gutiérrez
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0057282

Distinct Roles of Molecular Chaperones HSP90α and HSP90β in the Biogenesis of KCNQ4 Channels
Cited by: 33
Author(s): Yanhong Gao, Sergey Yechikov, Aitor Vázquez, Dongyang Chen, Liping Nie
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pgen.1001196

DNA Methylation and Normal Chromosome Behavior in Neurospora Depend on Five Components of a Histone Methyltransferase Complex, DCDC
Cited by: 92
Author(s): Zachary A. Lewis, Keyur K. Adhvaryu, Shinji Honda, Anthony L. Shiver, Marijn Knip, Ragna Sack, Eric U. Selker
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0061916

The Tyrosine Phosphatase PTPN14 Is a Negative Regulator of YAP Activity
Cited by: 73
Author(s): Chrysiis Michaloglou, Waltraut Lehmann, Typhaine Martin, Clara Delaunay, Andreas Hueber, Louise Barys, Honglin Niu, Éric Billy, Markus Wartmann, Moriko Ito, Christopher J. Wilson, Mary Ellen Digan, Andreas Bauer, Hans Voshol, Gerhard Christofori, William R. Sellers, Francesco Hofmann, Tobias Schmelzle
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0103326

SecDF as Part of the Sec-Translocase Facilitates Efficient Secretion of Bacillus cereus Toxins and Cell Wall-Associated Proteins
Cited by: 19
Author(s): Aniko Vörös, Roger Simm, Leyla Slamti, Matthew J. McKay, Ida K. Hegna, Christina Nielsen-LeRoux, Karl A. Hassan, Ian T. Paulsen, Didier Lereclus, Ole Andreas Økstad, Mark P. Molloy, Anne Brit Kolstø
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0199227

Influenza D virus M2 protein exhibits ion channel activity in Xenopus laevis oocytes
Cited by: 14
Author(s): Evan Kesinger, Jianing Liu, Aaron Jensen, Catherine P. Chia, Andrew Demers, Hideaki Moriyama
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1007011

Formation of a TBX20-CASZ1 protein complex is protective against dilated cardiomyopathy and critical for cardiac homeostasis
Cited by: 19
Author(s): Leslie Kennedy, Erin Kaltenbrun, Todd M. Greco, Brenda Temple, Laura E. Herring, Ileana M. Cristea, Frank L. Conlon
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0169552

Dispersion of Nanoparticles in Different Media Importantly Determines the Composition of Their Protein Corona
Cited by: 102
Author(s): Klemen Strojan, Adrijana Leonardi, Vladimir B. Bregar, Igor Križaj, Jurij Svete, Mojca Pavlin
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12936-015-0655-x

Effects of cyclin-dependent kinase inhibitor Purvalanol B application on protein expression and developmental progression in intra-erythrocytic Plasmodium falciparum parasites
Cited by: 5
Author(s): Kristen M. Bullard, Carolyn J. Broccardo, Susan M. Keenan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0083864

Molecular Characterization of Trypanosoma cruzi SAP Proteins with Host-Cell Lysosome Exocytosis-Inducing Activity Required for Parasite Invasion
Cited by: 13
Author(s): Tamiris Zanforlin, Ethel Bayer-Santos, Cristian Cortéz, Igor C. Almeida, Nobuko Yoshida, José Franco da Silveira
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1005837

Adaptive Remodeling of the Bacterial Proteome by Specific Ribosomal Modification Regulates Pseudomonas Infection and Niche Colonisation
Cited by: 45
Author(s): Richard Little, Lucia Grenga, Gerhard Saalbach, Alexandra M. Howat, Sebastian Pfeilmeier, Eleftheria Trampari, Jacob G. Malone
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0181910

iTRAQ protein profile analysis of developmental dynamics in soybean [Glycine max (L.) Merr.] leaves
Cited by: 8
Author(s): Jun Qin, Jianan Zhang, Fengmin Wang, Jinghua Wang, Zhi Zheng, Chang-Cheng Yin, Hao Chen, Ainong Shi, Bo Zhang, Pengyin Chen, Mengchen Zhang
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0127943

Proteomic Identification of DNA-PK Involvement within the RET Signaling Pathway
Cited by: 6
Author(s): Lyle Burdine, Marie Schluterman Burdine, Linley E. Moreland, Brad Fogel, Lisa Orr, Justin James, Richard H. Turnage, Alan J. Tackett
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1004987

Proteotoxic Stress Induces Phosphorylation of p62/SQSTM1 by ULK1 to Regulate Selective Autophagic Clearance of Protein Aggregates
Cited by: 237
Author(s): Junghyun Lim, M. Lenard Lachenmayer, Shuai Wu, Wenchao Li, Mondira Kundu, Rong Wang, Masaaki Komatsu, Young J. Oh, Yanxiang Zhao, Zhenyu Yue
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0109885

Enhancement of Synthetic Trichoderma-Based Enzyme Mixtures for Biomass Conversion with an Alternative Family 5 Glycosyl Hydrolase from Sporotrichum thermophile
Cited by: 12
Author(s): Zhuoliang Ye, Yun Zheng, Bingyao Li, Melissa S. Borrusch, Reginald Storms, Jonathan D. Walton
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0049506

Lactobacillus Proteins Are Associated with the Bactericidal Activity against E. coli of Female Genital Tract Secretions
Cited by: 53
Author(s): Sabah Kalyoussef, Edward Nieves, Ellen Dinerman, Colleen Carpenter, Viswanathan Shankar, Jamie Oh, Berta Burd, Ruth Hogue Angeletti, Karen W. Buckheit, David N. Fredricks, Rebecca Pellett Madan, Marla J. Keller, Betsy C. Herold
Software Mentions: 1
Published: about 12 years ago

10.1186/1475-2875-10-318

Mitochondrial NAD+-dependent malic enzyme from Anopheles stephensi: a possible novel target for malaria mosquito control
Cited by: 8
Author(s): Jennifer Pon, Eleonora Napoli, Shirley Luckhart, Cecilia R Giulivi
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pgen.1006238

Pfh1 Is an Accessory Replicative Helicase that Interacts with the Replisome to Facilitate Fork Progression and Preserve Genome Integrity
Cited by: 34
Author(s): Karin R. McDonald, Amanda J. Guise, Parham Pourbozorgi-Langroudi, Ileana M. Cristea, Virginia A. Zakian, John A. Capra, Nasim Sabouri
Software Mentions: 1
Published: about 8 years ago

10.26508/lsa.202000742

<i>Leishmania</i>-infected macrophages release extracellular vesicles that can promote lesion development
Cited by: 23
Author(s): Anna Gioseffi, Timothy Hamerly, Kha Van, Naixin Zhang, Rhoel R. Dinglasan, Phillip A. Yates, Peter E. Kima
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pgen.1003960

CRIS—A Novel cAMP-Binding Protein Controlling Spermiogenesis and the Development of Flagellar Bending
Cited by: 43
Author(s): Anke Miriam Krähling, Luis J. Álvarez, Katharina Debowski, Qui Van, Monika Gunkel, Stephan Irsen, Ashraf Al‐Amoudi, Timo Strünker, Elisabeth Kremmer, Eberhard Krause, Ingo Voigt, Simone Wörtge, Ari Waisman, Ingo Weyand, Reinhard Seifert, U. Benjamin Kaupp, Dagmar Wachten
Software Mentions: 1
Published: almost 11 years ago

10.26508/lsa.201900547

The iron–sulfur helicase DDX11 promotes the generation of single-stranded DNA for CHK1 activation
Cited by: 15
Author(s): Anna Katharina Simon, Sandra Kummer, Sonja Wild, Aleksandra Lezaja, Federico Teloni, Stanisław K. Jóźwiakowski, Matthias Altmeyer, Kerstin Gari
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-016-3472-x

The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions
Cited by: 10
Author(s): Pamela Vazquez-Gutierrez, Marc J. A. Stevens, Peter Gehrig, Simon Barkow-Oesterreicher, Christophe Lacroix, Christophe Chassard
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pgen.1005022

Seizures Are Regulated by Ubiquitin-specific Peptidase 9 X-linked (USP9X), a De-Ubiquitinase
Cited by: 62
Author(s): Lily Paemka, Vinit B. Mahajan, Salleh N. Ehaideb, Jessica M. Skeie, Men Chee Tan, Shu Wu, Allison Cox, Levi P. Sowers, Jozef Gécz, Lachlan A. Jolly, Polly J. Ferguson, Benjamin W. Darbro, Amy Schneider, Ingrid E. Scheffer, Gemma L. Carvill, Heather C Mefford, Hatem El‐Shanti, Stephen A. Wood, J. Robert Manak, Alexander G. Bassuk
Software Mentions: 1
Published: over 9 years ago

10.3390/life11010021

Arabidopsis Plant Natriuretic Peptide Is a Novel Interactor of Rubisco Activase
Cited by: 3
Author(s): Ilona Turek, Chris Gehring, Helen Ruth Irving
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pgen.1002652

Context-Dependent Dual Role of SKI8 Homologs in mRNA Synthesis and Turnover
Cited by: 28
Author(s): Eavan Dorcey, Antía Rodríguez-Villalón, Paula Salinas, Luca Santuari, Sylvain Pradervand, Keith Harshman, Christian S. Hardtke
Software Mentions: 1
Published: over 12 years ago

10.3390/life10120311

Erythromycin Treatment of Brassica campestris Seedlings Impacts the Photosynthetic and Protein Synthesis Pathways
Cited by: 3
Author(s): Young-Eun Yoon, Hyun Min Cho, Dong-Won Bae, Sung Joong Lee, Hyeonji Choe, Min Chul Kim, Mi Sun Cheong, Yong-Bok Lee
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-12-194

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes
Cited by: 14
Author(s): Niina Haiminen, F. Alex Feltus, Laxmi Parida
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pgen.1007696

Functional equivalence of germ plasm organizers
Cited by: 30
Author(s): Pritesh Krishnakumar, Stephan Riemer, Roshan Priyarangana Perera, Thomas Lingner, Alexander Goloborodko, Hazem Khalifa, Franck Bontems, Felix Kaufholz, Mohamed A. El-Brolosy, Roland Dosch
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pgen.1007693

Non-proteolytic activity of 19S proteasome subunit RPT-6 regulates GATA transcription during response to infection
Cited by: 9
Author(s): Abiola Olumuyiwa Olaitan, Alejandro Aballay
Software Mentions: 1
Published: about 6 years ago

10.1038/s41374-020-0403-x

Hemoglobin oxidation generates globin-derived peptides in atherosclerotic lesions and intraventricular hemorrhage of the brain, provoking endothelial dysfunction
Cited by: 30
Author(s): Niké Posta, Éva Csősz, Melinda Oros, Dávid Pethő, László Potor, Gergő Kalló, Zoltán Hendrik, Katalin Éva Sikura, Gábor Méhes, Csaba Tóth, József Posta, György Balla, József Balla
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1007051

Condensin II and GAIT complexes cooperate to restrict LINE-1 retrotransposition in epithelial cells
Cited by: 17
Author(s): Jacqueline R. Ward, K.I. Vasu, Emily Deutschman, Dalia Halawani, Peter A. Larson, Dongmei Zhang, Belinda Willard, Paul L. Fox, John V. Moran, Michelle S. Longworth
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1002786

FANCJ/BACH1 Acetylation at Lysine 1249 Regulates the DNA Damage Response
Cited by: 41
Author(s): Jenny Xie, Min Peng, Shawna Guillemette, Steven Quan, Stephanie Maniatis, Yuliang Wu, Aditya Venkatesh, Scott A. Shaffer, Robert M. Brosh, Sharon B. Cantor
Software Mentions: 1
Published: over 12 years ago

10.1155/2015/320120

Upper Gastrointestinal Bleeding from Gastric Amyloidosis in a Patient with Smoldering Multiple Myeloma
Cited by: 8
Author(s): Mihajlo Gjeorgjievski, Treta Purohit, Mitual Amin, Paul J. Kurtin, Mitchell S. Cappell
Software Mentions: 1
Published: almost 10 years ago

10.1186/1741-7007-10-5

Involvement of Plasmodium falciparum protein kinase CK2 in the chromatin assembly pathway
Cited by: 31
Author(s): Eeshita G Dastidar, Guillem Dayer, Zoe M Holland, Dominique Dorin‐Semblat, Aurélie Claës, Arnaud Chêne, Amit Sharma, Romain Hamelin, Marc Moniatte, José-Juan Lopez-Rubio, Artur Scherf, Christian Doerig
Software Mentions: 1
Published: almost 13 years ago

10.3390/ani11071942

Insect Protein-Based Diet as Potential Risk of Allergy in Dogs
Cited by: 16
Author(s): Blanka Premrov Bajuk, Petra Zrimšek, Tina Kotnik, Adrijana Leonardi, Igor Križaj, Breda Jakovac-Strajn
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pgen.1007487

Role of Bicaudal C1 in renal gluconeogenesis and its novel interaction with the CTLH complex
Cited by: 23
Author(s): Lucía C. Leal-Esteban, Benjamin Rothé, Simon Fortier, Manuela Isenschmid, Daniel Constam
Software Mentions: 1
Published: over 6 years ago

10.1002/cam4.1885

Exosome proteomic analyses identify inflammatory phenotype and novel biomarkers in African American prostate cancer patients
Cited by: 63
Author(s): Gatikrushna Panigrahi, Prakash Priyadarshi Praharaj, Hiroki Kittaka, Asit Ranjan Mridha, Olen M. Black, Ravi Singh, Roger S. Mercer, Adrie van Bokhoven, Kathleen C. Torkko, Chapla Agarwal, Rajesh Agarwal, Zakaria Y. Abd Elmageed, Hariom Yadav, Santosh K. Mishra, Gagan Deep
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pgen.1003977

Active Transport and Diffusion Barriers Restrict Joubert Syndrome-Associated ARL13B/ARL-13 to an Inv-like Ciliary Membrane Subdomain
Cited by: 90
Author(s): Sebiha Cevik, Anna A. W. M. Sanders, Erwin van Wijk, Karsten Boldt, Lara Clarke, Jeroen van Reeuwijk, Yuichi Hori, Nicola Horn, Lisette Hetterschijt, Anita Wdowicz, Andrea Mullins, Katarzyna Kaczyńska, Oktay I. Kaplan, Sylvia E. C. van Beersum, Kui Wu, Stef J.F. Letteboer, Dorus A. Mans, Toshiaki Katada, Kenji Kontani, Marius Ueffing, Ronald Roepman, Hannie Kremer, Oliver E. Blacque
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1008691

Mutation of CFAP57, a protein required for the asymmetric targeting of a subset of inner dynein arms in Chlamydomonas, causes primary ciliary dyskinesia
Cited by: 33
Author(s): Ximena M. Bustamante-Marin, Amjad Horani, Mihaela Stoyanova, Wu Lin Charng, Mathieu Bottier, Patrick R. Sears, Weining Yin, M. Leigh Anne Daniels, Hailey Bowen, Donald F. Conrad, Michael R. Knowles, Lawrence E. Ostrowski, Maimoona A. Zariwala, Susan K. Dutcher
Software Mentions: 1
Published: over 4 years ago

10.1002/cam4.2240

Dynamic urinary proteomic analysis in a Walker 256 intracerebral tumor model
Cited by: 14
Author(s): Linpei Zhang, Yuqiu Li, Wenqi Meng, Yanying Ni, Youhe Gao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1009126

Mutations in PIH proteins MOT48, TWI1 and PF13 define common and unique steps for preassembly of each, different ciliary dynein
Cited by: 16
Author(s): Ryôichi Yamamoto, Shiho Yanagi, Masahito Nagao, Yuya Yamasaki, Yoshinori Tanaka, Winfield S. Sale, Toshiki Yagi, Takahide Kon
Software Mentions: 1
Published: about 4 years ago

10.1002/cam4.1225

Dynamic changes of urine proteome in a Walker 256 tumor-bearing rat model
Cited by: 46
Author(s): Jianhuang Wu, Zhengguang Guo, Youhe Gao
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1004516

An Essential Nonredundant Role for Mycobacterial DnaK in Native Protein Folding
Cited by: 59
Author(s): Allison Fay, Michael S. Glickman
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pgen.1006996

Chlamydomonas DYX1C1/PF23 is essential for axonemal assembly and proper morphology of inner dynein arms
Cited by: 30
Author(s): Ryôichi Yamamoto, Jagan Mohan Obbineni, Lea M. Alford, Takahiro Ide, Mikito Owa, Juyeon Hwang, Takahide Kon, Kazuo Inaba, Noliyanda James, Stephen M. King, Takashi Ishikawa, Winfield S. Sale, Susan K. Dutcher
Software Mentions: 1
Published: about 7 years ago

10.1186/s12935-018-0625-9

Sulbactam-enhanced cytotoxicity of doxorubicin in breast cancer cells
Cited by: 43
Author(s): Shao-Hsuan Wen, Shey-Chiang Su, Bo-Huang Liou, Cheng-Yu Lin, Kuan‐Rong Lee
Software Mentions: 1
Published: about 6 years ago

10.1186/s12864-021-07858-x

Selection of functional EPHB2 genotypes from ENU mutated grass carp treated with GCRV
Cited by: 1
Author(s): Meher un Nissa, Zhuangzhuang Jiang, Guo‐Dong Zheng, Shu‐Ming Zou
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pgen.1005714

Branched-Chain Aminotransferases Control TORC1 Signaling in Saccharomyces cerevisiae
Cited by: 57
Author(s): Joanne M. Kingsbury, Neelam Dabas Sen, María E. Cárdenas
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13058-016-0741-1

CUB domain-containing protein 1 and the epidermal growth factor receptor cooperate to induce cell detachment
Cited by: 26
Author(s): Mary E. Law, Renan B. Ferreira, Bradley J. Davis, Paul J. Higgins, Jae-Sung Kim, Ronald K. Castellano, Sixue Chen, Hendrik Luesch, Brian K. Law
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1003943

Ribosome Synthesis and MAPK Activity Modulate Ionizing Radiation-Induced Germ Cell Apoptosis in Caenorhabditis elegans
Cited by: 27
Author(s): Ralf Eberhard, Lilli Stergiou, E. Hofmann, Jen Hofmann, Simon Haenni, Youjin Teo, André Furger, Michael O. Hengartner
Software Mentions: 1
Published: about 11 years ago

10.1186/bcr3207

17beta-hydroxysteroid dehydrogenase type 1 modulates breast cancer protein profile and impacts cell migration
Cited by: 27
Author(s): Juliette A. Aka, Mouna Zerradi, François Houle, Jacques Huot, Sheng‐Xiang Lin
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1006192

Tracking the Fragile X Mental Retardation Protein in a Highly Ordered Neuronal RiboNucleoParticles Population: A Link between Stalled Polyribosomes and RNA Granules
Cited by: 75
Author(s): Rachid El Fatimy, Laetitia Davidovic, Sarah Tremblay, Xavier H. Jaglin, Alain Y. Dury, Claude Robert, Paul De Koninck, Édouard W. Khandjian
Software Mentions: 1
Published: over 8 years ago

10.1186/s13058-016-0697-1

Activation of IGF1R/p110β/AKT/mTOR confers resistance to α-specific PI3K inhibition
Cited by: 61
Author(s): Cédric Leroy, Pedro Marques Ramos, Karen Cornille, Débora Bonenfant, Christine Fritsch, Hans Voshol, Mohamed Bentires‐Alj
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pgen.1005575

The Ciliopathy Protein CC2D2A Associates with NINL and Functions in RAB8-MICAL3-Regulated Vesicle Trafficking
Cited by: 62
Author(s): Ruxandra Bachmann‐Gagescu, Margo Dona, Lisette Hetterschijt, E.L.G.M. Tonnaer, Theo Peters, Erik de Vrieze, Dorus A. Mans, Sylvia E. C. van Beersum, Ian G. Phelps, Heleen H. Arts, Jan E.E. Keunen, Marius Ueffing, Ronald Roepman, Karsten Boldt, Dan Doherty, Cecilia B. Moens, Stephan C.F. Neuhauss, Hannie Kremer, Erwin van Wijk
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pgen.1006002

Sc65-Null Mice Provide Evidence for a Novel Endoplasmic Reticulum Complex Regulating Collagen Lysyl Hydroxylation
Cited by: 46
Author(s): Melissa E. Heard, Roberta Besio, Mary Ann Weis, J.P.N. Rai, David M. Hudson, Milena Dimori, Sarah M. Zimmerman, Jeffrey A. Kamykowski, William R. Hogue, Frances L. Swain, Marie Schluterman Burdine, Samuel G. Mackintosh, Alan J. Tackett, Larry J. Suva, David R. Eyre, Roy Morello
Software Mentions: 1
Published: over 8 years ago

10.1186/s13058-020-01373-9

Shotgun proteomics coupled to nanoparticle-based biomarker enrichment reveals a novel panel of extracellular matrix proteins as candidate serum protein biomarkers for early-stage breast cancer detection
Cited by: 10
Author(s): Claudia Fredolini, Khyatiben V. Pathak, Luisa Paris, Kristina Chapple, Kristine Tsantilas, Matthew Rosenow, Tony Tegeler, Krystine Garcia-Mansfield, Davide Tamburro, Weidong Zhou, Paul Russo, Samuele Massarut, Francesco Facchiano, Claudio Belluco, Ruggero De Maria, Enrico Garaci, Lance A. Liotta, Emanuel F. Petricoin, Patrick Pirrotte
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12864-020-07066-z

Proteome of larval metamorphosis induced by epinephrine in the Fujian oyster Crassostrea angulata
Cited by: 11
Author(s): Guilan Di, Xiaohuo Xiao, Ming Him Tong, Xinhua Chen, Li Li, Meng Huang, Long Zhou, Caihuan Ke
Software Mentions: 1
Published: about 4 years ago

10.1186/1471-2164-15-366

Dramatic expansion of the black widow toxin arsenal uncovered by multi-tissue transcriptomics and venom proteomics
Cited by: 74
Author(s): Robert A. Haney, Nadia A. Ayoub, Thomas H. Clarke, Cheryl Y. Hayashi, Jessica E. Garb
Software Mentions: 1
Published: over 10 years ago

10.1590/1984-3143-AR2020-0552

Uterine infusion of conceptus fragments changes the protein profile from cyclic mares
Cited by: 0
Author(s): Cesar Augusto Camacho, Gabriel de Oliveira Santos, Jorge Emilio Caballeros, N. Cazales, Camilo José Ramirez, Pedro Marcus Pereira Vidigal, Humberto Josué de Oliveira Ramos, Edvaldo Barros, Rodrigo Costa Mattos
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pgen.1009667

The RNA-binding protein Igf2bp3 is critical for embryonic and germline development in zebrafish
Cited by: 4
Author(s): Yin Ho Vong, Lavanya Sivashanmugam, Rebecca Leech, Andreas Zaucker, Alexandra M. E. Jones, Karuna Sampath
Software Mentions: 1
Published: over 3 years ago

10.1186/s13058-019-1228-7

Inhibition of the histone demethylase, KDM5B, directly induces re-expression of tumor suppressor protein HEXIM1 in cancer cells
Cited by: 16
Author(s): Monica M. Montano, I‐Ju Yeh, Yinghua Chen, Chris Hernandez, Janna Kiselar, María de la Fuente, Adriane M. Lawes, Marvin T. Nieman, Philip D. Kiser, James W. Jacobberger, Agata A. Exner, Matthew C. Lawes
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pgen.1002673

Principles of Carbon Catabolite Repression in the Rice Blast Fungus: Tps1, Nmr1-3, and a MATE–Family Pump Regulate Glucose Metabolism during Infection
Cited by: 104
Author(s): Jessie Fernandez, Janet Wright, David E. Hartline, Cristian F. Quispe, Nandakumar Madayiputhiya, Richard A. Wilson
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pgen.1004756

The Talin Head Domain Reinforces Integrin-Mediated Adhesion by Promoting Adhesion Complex Stability and Clustering
Cited by: 29
Author(s): Stephanie J. Ellis, Emily Lostchuck, Benjamin T. Goult, Mohamed Bouaouina, Michael J. Fairchild, Pablo López-Ceballos, David A. Calderwood, Guy Tanentzapf
Software Mentions: 1
Published: about 10 years ago

10.1186/s13058-020-01363-x

Extracellular vesicles from young women’s breast cancer patients drive increased invasion of non-malignant cells via the Focal Adhesion Kinase pathway: a proteomic approach
Cited by: 21
Author(s): Kimberly R. Jordan, Jill Hall, Troy Schedin, Michelle Borakove, Jenny J. Xian, Monika Dzieciątkowska, Traci R. Lyons, Pepper Schedin, Kirk C. Hansen, Virginia F. Borges
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pgen.1003305

Discovery of a Splicing Regulator Required for Cell Cycle Progression
Cited by: 39
Author(s): Elena S. Suvorova, Matthew McKnight Croken, Stella Kratzer, Li-Min Ting, Magnolia María Conde de Felipe, Bharath Balu, Meng L. Markillie, Louis M. Weiss, Kami Kim, Michael White
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pcbi.1004508

Systematic Prediction of Scaffold Proteins Reveals New Design Principles in Scaffold-Mediated Signal Transduction
Cited by: 13
Author(s): Jianfei Hu, Johnathan Neiswinger, Jin Zhang, Heng Zhu, Jiang Qian
Software Mentions: 1
Published: about 9 years ago

10.3390/brainsci8090167

The Healing Effect of Human Milk Fat Globule-EGF Factor 8 Protein (MFG-E8) in A Rat Model of Parkinson’s Disease
Cited by: 7
Author(s): Yoshiki Nakashima, Chika Miyagi-Shiohira, Hirofumi Noguchi, Takeshi Ômasa
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1007882

A fully joint Bayesian quantitative trait locus mapping of human protein abundance in plasma
Cited by: 18
Author(s): Hélène Ruffieux, Jérôme Carayol, Radu Popescu, Mary‐Ellen Harper, Robert Dent, Wim H. M. Saris, Arne Astrup, Jörg Hager, A. C. Davison, Armand Valsesia
Software Mentions: 1
Published: over 4 years ago

10.1016/j.bonr.2019.100238

Early urine proteome changes in an implanted bone cancer rat model
Cited by: 9
Author(s): Ting Wang, Lujun Li, Weiwei Qin, Youhe Gao
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-019-5836-5

Analysis of the equine “cumulome” reveals major metabolic aberrations after maturation in vitro
Cited by: 19
Author(s): Jasmin Walter, Fabian Huwiler, Claudia Fortes, Jonas Grossmann, Bernd Roschitzki, Jingyu Hu, Hanspeter Naegeli, Endre Laczkó, Ulrich Bleul
Software Mentions: 1
Published: over 5 years ago

10.1186/s12859-021-04237-x

On how to generalize species-specific conceptual schemes to generate a species-independent Conceptual Schema of the Genome
Cited by: 3
Author(s): Alberto García S., Juan Carlos Casamayor
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pbio.1000139

RIN4 Functions with Plasma Membrane H+-ATPases to Regulate Stomatal Apertures during Pathogen Attack
Cited by: 237
Author(s): Jun Li, James M. Elmore, Anja Thoe Fuglsang, Michael G. Palmgren, Brian J. Staskawicz, Gitta Coaker
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pbio.3000437

Conservation and divergence of protein pathways in the vertebrate heart
Cited by: 14
Author(s): Joel D. Federspiel, Panna Tandon, Caralynn M. Wilczewski, Lauren Wasson, Laura E. Herring, Samvida S. Venkatesh, Ileana M. Cristea, Frank L. Conlon
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.1001597

Quantitative Control of Protein S-Palmitoylation Regulates Meiotic Entry in Fission Yeast
Cited by: 59
Author(s): Mingzi M. Zhang, Pei-Yun Jenny Wu, Felice D. Kelly, Paul Nurse, Howard C. Hang
Software Mentions: 1
Published: over 11 years ago

10.1038/bcj.2015.39

A novel antibody–drug conjugate targeting SAIL for the treatment of hematologic malignancies
Cited by: 15
Author(s): S Y Kim, J.M.J. Theunissen, J Balibalos, Sindy Liao-Chan, Michael Babcock, Tiffany Wong, Belinda Cairns, Deyarina González, Edward Htun van der Horst, Michel Perez, Zoia Levashova, Lawrence Chinn, Joseph A. D’Alessio, Mark R. Flory, Abel Bermudez, David Y. Jackson, Edward Ha, Jorge Monteon, Maureen Bruhns, G Chen, T-S Migone
Software Mentions: 1
Published: over 9 years ago

10.1186/s13068-021-01945-7

Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600
Cited by: 10
Author(s): Fernanda Lopes de Figueiredo, Ana Carolina Piva de Oliveira, César Rafael Fanchini Terrasan, Thiago Augusto Gonçalves, Jaqueline Aline Gerhardt, Geizecler Tomazetto, Gabriela Félix Persinoti, Marcelo Ventura Rubio, Jennifer Andrea Tamayo Peña, Michelle Fernandes Araújo, Maria Augusta de Carvalho Silvello, Telma Teixeira Franco, Sarita Cândida Rabelo, Rosana Goldbeck, Fábio M. Squina, André Damásio
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pbio.1000291

Modulation of Heat Shock Transcription Factor 1 as a Therapeutic Target for Small Molecule Intervention in Neurodegenerative Disease
Cited by: 165
Author(s): Daniel W. Neef, Michelle L. Turski, Dennis J. Thiele
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pbio.3000590

Lack of the MHC class II chaperone H2-O causes susceptibility to autoimmune diseases
Cited by: 15
Author(s): Robin A Welsh, Nianbin Song, Catherine A. Foss, Tatiana Boronina, Robert N. Cole, Scheherazade Sadegh‐Nasseri
Software Mentions: 1
Published: almost 5 years ago

10.1186/1754-6834-5-54

Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions
Cited by: 79
Author(s): Shara McClendon, Tanveer S. Batth, Young-Mo Kim, Paul D. Adams, Blake A. Simmons, Steven W. Singer
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-15-839

iTRAQ-proteomics and bioinformatics analyses of mammary tissue from cows with clinical mastitis due to natural infection with Staphylococci aureus
Cited by: 54
Author(s): Jinming Huang, Guanghong Luo, Zijing Zhang, Xiuge Wang, Zhihua Ju, Chao Qi, Yan Zhang, Changfa Wang, Rongling Li, Jianbin Li, Wanzhong Yin, Yinxue Xu, Sonia J. Moisá, Juan J. Loor, Jun Zhong
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.ab.2011.05.005

Mapping protein interactions by combining antibody affinity maturation and mass spectrometry
Cited by: 22
Author(s): Michael R. Dyson, Yong Zheng, Cunjie Zhang, Karen Colwill, Kritika Pershad, Brian K. Kay, Tony Pawson, John McCafferty
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pbio.1000276

2-D Structure of the A Region of Xist RNA and Its Implication for PRC2 Association
Cited by: 213
Author(s): Sylvain Maenner, Magali Blaud, Laëtitia Fouillen, Anne Savoye, Virginie Marchand, Agnès Dubois, Sarah Sanglier‐Cianférani, Alain Van Dorsselaer, Philippe Clerc, Philip Avner, Athanase Visvikis, Christiane Branlant
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pbio.1001648

A Meiosis-Specific Form of the APC/C Promotes the Oocyte-to-Embryo Transition by Decreasing Levels of the Polo Kinase Inhibitor Matrimony
Cited by: 36
Author(s): Zachary J. Whitfield, Jennifer Chisholm, R. Scott Hawley, Terry L. Orr‐Weaver
Software Mentions: 1
Published: about 11 years ago

10.1186/s13068-016-0476-3

Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass
Cited by: 57
Author(s): Willian Daniel Hahn Schneider, Thiago Augusto Gonçalves, Cristiane Uchima, Matthew Brian Couger, Rolf A. Prade, Fábio M. Squina, Aldo José Pinheiro Dillon, Marli Camassola
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pbio.3000308

Phosphorylation of the VAR2CSA extracellular region is associated with enhanced adhesive properties to the placental receptor CSA
Cited by: 12
Author(s): Dominique Dorin‐Semblat, Marilou Tétard, Aurélie Claës, Jean-Philippe Semblat, Sébastien Dechavanne, Z. Fourati, Romain Hamelin, Florence Armand, Graziella Matesic, Sofia Nunes-Silva, Anand Srivastava, Stéphane Gangnard, José-Juan Lopez-Rubio, Marc Moniatte, Christian Doerig, Artur Scherf, B Gamain
Software Mentions: 1
Published: over 5 years ago

10.1186/1754-6834-5-52

A time course analysis of the extracellular proteome of Aspergillus nidulans growing on sorghum stover
Cited by: 64
Author(s): Sayali Saykhedkar, Anamika Ray, Patricia Ayoubi-Canaan, Steven D. Hartson, Rolf A. Prade, Andrew J. Mort
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pbio.1000559

High-Throughput Chemical Screen Identifies a Novel Potent Modulator of Cellular Circadian Rhythms and Reveals CKIα as a Clock Regulatory Kinase
Cited by: 212
Author(s): Tsuyoshi Hirota, Jae Woo Lee, Warren G. Lewis, Eric Erquan Zhang, Ghislaı̀n Breton, Xianzhong Liu, Michael Garcia, Eric C. Peters, Jean Pierre Etchegaray, David Traver, Peter G. Schultz, Steve A. Kay
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pbio.3000425

Targeting oxidative pentose phosphate pathway prevents recurrence in mutant Kras colorectal carcinomas
Cited by: 15
Author(s): Wenchao Gao, Yuting Xu, Tao Chen, Zunguo Du, Xiujuan Liu, Zhiqian Hu, Wei Dong, Chunfang Gao, Wei Zhang, Qingquan Li
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.2000733

The Machado–Joseph Disease Deubiquitinase Ataxin-3 Regulates the Stability and Apoptotic Function of p53
Cited by: 59
Author(s): Hongmei Li, Xiaoling Li, Ning Guan, Shu Zhu, Xinwen Ma, Xiuli Liu, Chunying Liu, Min Huang, Imke Schmitt, Ullrich Wüllner, Yamei Niu, Caixia Guo, Qiang Wang, Tie-Shan Tang
Software Mentions: 1
Published: about 8 years ago

10.1186/s13068-016-0518-x

Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199
Cited by: 55
Author(s): Rubén López-Mondejar, Daniela Zühlke, Tomáš Větrovský, Dörte Becher, Katharina Riedel, Petr Baldrián
Software Mentions: 1
Published: over 8 years ago

10.1186/s13068-016-0525-y

Exploring glycoside hydrolases and accessory proteins from wood decay fungi to enhance sugarcane bagasse saccharification
Cited by: 37
Author(s): Fernanda Valadares, Thiago Augusto Gonçalves, Dayelle S. P. O. Gonçalves, Fernando Segato, Elisson Romanel, Adriane M. F. Milagres, Fábio M. Squina, André Ferraz
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pbio.1000105

Stress-Dependent Coordination of Transcriptome and Translatome in Yeast
Cited by: 131
Author(s): Regula E. Halbeisen, André P. Gerber
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pbio.3001247

Fungal and host protein persulfidation are functionally correlated and modulate both virulence and antifungal response
Cited by: 6
Author(s): Mónica Sueiro-Olivares, Jennifer Scott, Sara Gago, Dunja Petrovic, Emilia Kouroussis, Jasmina Živanović, Yidong Yu, Marlene Strobel, Cristina Cunha, Darren D Thomson, Rachael Fortune‐Grant, Sina Thusek, Paul Bowyer, Andreas Beilhack, Agostinho Carvalho, Elaine Bignell, Miloš R. Filipović, Jorge Amich
Software Mentions: 1
Published: over 3 years ago

10.1186/1754-6834-3-22

Rapid optimization of enzyme mixtures for deconstruction of diverse pretreatment/biomass feedstock combinations
Cited by: 142
Author(s): Goutami Banerjee, Suzana Car, John S. Scott-Craig, Melissa S. Borrusch, Jonathan D. Walton
Software Mentions: 1
Published: about 14 years ago

10.1186/s13068-016-0580-4

Mapping N-linked glycosylation of carbohydrate-active enzymes in the secretome of Aspergillus nidulans grown on lignocellulose
Cited by: 21
Author(s): Marcelo Ventura Rubio, Mariane Paludetti Zubieta, João Paulo L. Franco Cairo, Felipe Calzado, Adriana Franco Paes Leme, Fábio M. Squina, Rolf A. Prade, André Damásio
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pbio.1000418

Highly Divergent Mitochondrial ATP Synthase Complexes in Tetrahymena thermophila
Cited by: 74
Author(s): Praveen Balabaskaran Nina, Natalya V. Dudkina, Lesley A. Kane, Jennifer E. Van Eyk, Egbert J. Boekema, Michael W. Mather, Akhil B. Vaidya
Software Mentions: 1
Published: over 14 years ago

10.3390/plants9020172

Stimulation of Insect Herbivory by Elevated Temperature Outweighs Protection by the Jasmonate Pathway
Cited by: 10
Author(s): Nathan E. Havko, George Kapali, Michael R. Das, Gregg A. Howe
Software Mentions: 1
Published: almost 5 years ago

Projects: pypi: Scaffold

Papers Mentioning Scaffold 1,866