pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1186/s12862-021-01910-w

Odorant-binding proteins in canine anal sac glands indicate an evolutionarily conserved role in mammalian chemical communication
Cited by: 5
Author(s): Sunita Janssenswillen, Kim Roelants, Sébastien Carpentier, H. de Rooster, Mieke Metzemaekers, Bram Vanschoenwinkel, Paul Proost, Franky Bossuyt
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0134014

Flux Balance Analysis with Objective Function Defined by Proteomics Data—Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine
Cited by: 21
Author(s): Daniel Montezano, Laura Meek, Rashmi Gupta, Luiz E. Bermudez, J.C.M. Bermudez
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0007050

Barrier-to-Autointegration Factor Proteome Reveals Chromatin-Regulatory Partners
Cited by: 93
Author(s): Rocío Montes de, Christopher J. Shoemaker, Marjan Guček, Robert N. Cole, Katherine L. Wilson
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0100263

Insight into PreImplantation Factor (PIF*) Mechanism for Embryo Protection and Development: Target Oxidative Stress and Protein Misfolding (PDI and HSP) through Essential RIPK Binding Site
Cited by: 30
Author(s): Eytan R. Barnea, David M. Lubman, Yan Hui Liu, V. Absalon-Medina, Soren Hayrabedyan, Krassimira Todorova, R.O. Gilbert, Joy Guingab, Timothy J. Barder
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0018724

Temperature-Induced Protein Secretion by Leishmania mexicana Modulates Macrophage Signalling and Function
Cited by: 84
Author(s): Kasra Hassani, Elisabeth Antoniak, Armando Jardim, Martin Olivier
Software Mentions: 2
Published: about 14 years ago

10.1371/journal.pone.0185125

Biochemical and biomechanical properties of the pacemaking sinoatrial node extracellular matrix are distinct from contractile left ventricular matrix
Cited by: 19
Author(s): Jessica M. Gluck, Anthony W. Herren, Sergey Yechikov, Hillary K.J. Kao, Ambereen Khan, Brett S. Phinney, Nipavan Chiamvimonvat, James W. Chan, Deborah K. Lieu
Software Mentions: 2
Published: almost 8 years ago

10.3390/microorganisms9081593

Glucosidase Inhibitors Screening in Microalgae and Cyanobacteria Isolated from the Amazon and Proteomic Analysis of Inhibitor Producing Synechococcus sp. GFB01
Cited by: 6
Author(s): Diana Gomes Gradíssimo, Vivian Cássia Oliveira da Silva, Luciana Pereira Xavier, Sidney Vasconcelos do Nascimento, Rafael Borges da Silva Valadares, Sílvia Maria Mathes Faustino, Maria Paula Cruz Schneider, Agenor Valadares Santos
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pone.0040695

Integrated Metabolo-Proteomic Approach to Decipher the Mechanisms by Which Wheat QTL (Fhb1) Contributes to Resistance against Fusarium graminearum
Cited by: 212
Author(s): Raghavendra Gunnaiah, Ajjamada C. Kushalappa, Raj Duggavathi, S. L. Fox, Daryl J. Somers
Software Mentions: 2
Published: about 13 years ago

10.1093/pcp/pcaa170

A Novel Signaling Pathway Required for Arabidopsis Endodermal Root Organization Shapes the Rhizosphere Microbiome
Cited by: 11
Author(s): Julius Dürr, Guilhem Reyt, Stijn Spaepen, Sally Hilton, Cathal Meehan, Qi Wu, Takehiro Kamiya, Paulina Flis, H. G. Dickinson, Attila Fehér, Shivshankar Umashankar, Shruti Pavagadhi, Sanjay Swarup, David E. Salt, Gary D. Bending, José Gutierrez-Marcos
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0004501

Two Chromogranin A-Derived Peptides Induce Calcium Entry in Human Neutrophils by Calmodulin-Regulated Calcium Independent Phospholipase A2
Cited by: 87
Author(s): Dandan Zhang, Peiman Shooshtarizadeh, Benoît‐Joseph Laventie, Didier Colin, Jean-François Chich, Jasmina Vidić, Jean de Barry, Sylvette Chasserot‐Golaz, François Delalande, Alain Van Dorsselaer, Francis Schneider, Karen B. Helle, Dominique Aunis, Gilles Prévost, Marie‐Hélène Metz‐Boutigue
Software Mentions: 2
Published: over 16 years ago

10.1371/journal.pone.0018497

A Mighty Small Heart: The Cardiac Proteome of Adult Drosophila melanogaster
Cited by: 81
Author(s): Anthony Cammarato, Christian H. Ahrens, Nakissa N. Alayari, Ermir Qeli, Jasma Rucker, Mary C. Reedy, Christian M. Zmasek, Marjan Guček, Robert N. Cole, Jennifer E. Van Eyk, Rolf Bodmer, Brian O’Rourke, Sanford I. Bernstein, D. Brian Foster
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0218360

Candida utilis yeast as a functional protein source for Atlantic salmon (Salmo salar L.): Local intestinal tissue and plasma proteome responses
Cited by: 14
Author(s): Felipe Eduardo Reveco-Urzua, Mette Hofossæter, Mallikarjuna Rao Kovi, Liv Torunn Mydland, Ragnhild Ånestad, Randi Sørby, Charles McL. Press, Leidy Lagos, Margareth Øverland
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-018-0423-2

A multi-omic analysis reveals the role of fumarate in regulating the virulence of enterohemorrhagic Escherichia coli
Cited by: 20
Author(s): Chengi Kuo, Sin Tian Wang, Chia Mei Lin, Hao-Chieh Chiu, Cheng Huang, Der Yen Lee, Geen Dong Chang, Tse‐Chuan Chou, Jenn Wei Chen, Chang Shi Chen
Software Mentions: 2
Published: over 7 years ago

10.3389/fvets.2020.584948

Protein Cargo of Extracellular Vesicles From Bovine Follicular Fluid and Analysis of Their Origin From Different Ovarian Cells
Cited by: 19
Author(s): Svetlana Uzbekova, Carmen Almiñana, Valérie Labas, Ana-Paula Teixeira-Gomes, Lucie Combes‐Soia, Guillaume Tsikis, Anaïs Vitorino Carvalho, Rustem Uzbekov, Г. Н. Сингина
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-019-53984-8

Integrated Transcriptomics, Proteomics, and Glycomics Reveals the Association between Up-regulation of Sialylated N-glycans/Integrin and Breast Cancer Brain Metastasis
Cited by: 21
Author(s): Wenjing Peng, Rui Zhu, Shiyue Zhou, Parvin Mirzaei, Yehia Mechref
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0025561

Functional Analysis of the Magnetosome Island in Magnetospirillum gryphiswaldense: The mamAB Operon Is Sufficient for Magnetite Biomineralization
Cited by: 152
Author(s): Anna Lohße, Susanne Ullrich, Emanuel Katzmann, Sarah Borg, G. Wanner, Michael Richter, Birgit Voigt, Thomas Schweder, Dirk Schüler
Software Mentions: 1
Published: almost 14 years ago

10.1186/s40168-020-00845-6

Gut microbiota-derived indole 3-propionic acid protects against radiation toxicity via retaining acyl-CoA-binding protein
Cited by: 93
Author(s): He Xiao, Ming Cui, Yuan Li, Jing Dong, Shuqin Zhang, Changchun Zhu, Mian Jiang, Tong Zhu, Bin Wang, Haichao Wang, Saijun Fan
Software Mentions: 1
Published: about 5 years ago

10.1186/s12866-020-01964-8

The role of the msaABCR operon in implant-associated chronic osteomyelitis in Staphylococcus aureus USA300 LAC
Cited by: 9
Author(s): Gyan S. Sahukhal, Michelle Tucci, Hamed Benghuzzi, Gerri Wilson, Mohamed O. Elasri
Software Mentions: 1
Published: almost 5 years ago

10.1128/MRA.01280-18

The Foliar Endophyte Phialocephala scopiformis DAOMC 229536 Proteome When Grown on Wood Used as the Sole Carbon Source
Cited by: 2
Author(s): Jennifer M. Bhatnagar, Grzegorz Sabat, Daniel Cullen
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0114594

CRISPR-Cas9-Based Knockout of the Prion Protein and Its Effect on the Proteome
Cited by: 49
Author(s): Mohadeseh Mehrabian, Brethour Dylan, Sarah E MacIsaac, Jin Kyu Kim, C. Geeth Gunawardana, Hansen Wang, Gerold Schmitt‐Ulms
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2180-14-70

The CJIE1 prophage of Campylobacter jejuni affects protein expression in growth media with and without bile salts
Cited by: 16
Author(s): Clifford G. Clark, Patrick Chong, Stuart McCorrister, Philippe Simon, Matthew Walker, David M. Lee, Kimberly Nguy, Keding Cheng, Matthew W. Gilmour, Garrett Westmacott
Software Mentions: 1
Published: over 11 years ago

10.1186/1472-6882-12-S1-P22

P01.22. Identification of a peptide biomarker from bromelain, an extract of ananas comosus merr, using LC-SRM/MS
Cited by: 0
Author(s): Eric R. Secor, Steven M. Szczepanek, Linda Guernsey, Lawrence K. Silbart, Roger S. Thrall, Dong Qi Han
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pone.0214059

HTLV-1 Tax-1 interacts with SNX27 to regulate cellular localization of the HTLV-1 receptor molecule, GLUT1
Cited by: 17
Author(s): Jacob Al-Saleem, Wessel P. Dirksen, Michael P. Martinez, Nikoloz Shkriabai, Mamuka Kvaratskhelia, Lee Ratner, Patrick L. Green
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0149132

Characterization and Vaccine Potential of Outer Membrane Vesicles Produced by Haemophilus parasuis
Cited by: 39
Author(s): William D. McCaig, Crystal L. Loving, Holly R. Hughes, Susan L. Brockmeier
Software Mentions: 1
Published: over 9 years ago

10.1099/mic.0.070755-0

Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM
Cited by: 92
Author(s): Brant R. Johnson, Kurt Selle, Sarah O’Flaherty, Yong Jun Goh, Todd R. Klaenhammer
Software Mentions: 1
Published: over 11 years ago

10.1002/mbo3.1012

Proteomic analysis of Aspergillus niger 3.316 under heat stress
Cited by: 10
Author(s): Xiaogeng Deng, Bin Du, Fengmei Zhu, Yanan Gao, Jun Li
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0095007

Absence of Metalloprotease GP63 Alters the Protein Content of Leishmania Exosomes
Cited by: 89
Author(s): Kasra Hassani, Marina Tiemi Shio, Caroline Martel, Denis Faubert, Martin Olivier
Software Mentions: 1
Published: over 11 years ago

10.1264/jsme2.ME15195

Proteome Analyses of Soil Bacteria Grown in the Presence of Potato Suberin, a Recalcitrant Biopolymer
Cited by: 6
Author(s): Amadou Sidibé, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Lauriane Giroux, Vicky Toussaint, Carole Beaulieu
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2180-11-245

Biofilm and planktonic pneumococci demonstrate disparate immunoreactivity to human convalescent sera
Cited by: 28
Author(s): Carlos J. Sánchez, Brady J. Hurtgen, Anel Lizcano, Pooja Shivshankar, Garry T. Cole, Carlos J. Orihuela
Software Mentions: 1
Published: over 13 years ago

10.1186/1471-2121-14-6

GxcC connects Rap and Rac signaling during Dictyostelium development
Cited by: 13
Author(s): Katarzyna Plak, Douwe M. Veltman, Fabrizia Fusetti, Jetze Beeksma, Fernando Rivero, Peter J.M. van Haastert, Arjan Kortholt
Software Mentions: 1
Published: over 12 years ago

10.1264/jsme2.ME16110

Physical, Chemical and Proteomic Evidence of Potato Suberin Degradation by the Plant Pathogenic Bacterium Streptomyces scabiei
Cited by: 17
Author(s): Carole Beaulieu, Amadou Sidibé, Raoudha Jabloune, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Ernest Monga, Mark A. Bernards
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0059462

Alix Serves as an Adaptor That Allows Human Parainfluenza Virus Type 1 to Interact with the Host Cell ESCRT System
Cited by: 13
Author(s): Jim Boonyaratanakornkit, Henrick Schomacker, Peter L. Collins, Alexander Schmidt
Software Mentions: 1
Published: over 12 years ago

10.1186/s12866-020-02065-2

Differential production and secretion of potentially toxigenic extracellular proteins from hypervirulent Aeromonas hydrophila under biofilm and planktonic culture
Cited by: 13
Author(s): Priscilla C. Barger, Mark R. Liles, Benjamin H. Beck, Joseph C. Newton
Software Mentions: 1
Published: over 4 years ago

10.1186/1475-2859-11-79

Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli
Cited by: 47
Author(s): Adrienne E. McKee, Becky J. Rutherford, Dylan Chivian, Edward Baidoo, Darmawi Juminaga, Dwight Kuo, Peter I. Benke, Jeffrey A. Dietrich, Magali Suzanne, Adam P. Arkin, Young-Mo Kim, Paul D. Adams, Jay D. Keasling, Swapnil R. Chhabra
Software Mentions: 1
Published: about 13 years ago

10.1186/s12934-016-0564-x

Proteomic analysis of the signaling pathway mediated by the heterotrimeric Gα protein Pga1 of Penicillium chrysogenum
Cited by: 15
Author(s): Ulises Carrasco-Navarro, Rosario Vera-Estrella, Bronwyn J. Barkla, Eduardo Zúñiga-León, Horacio Reyes‐Vivas, F Fernandez, Francisco Fierro
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12920-018-0382-6

Differentially expressed proteins in positive versus negative HNSCC lymph nodes
Cited by: 6
Author(s): Alessandra Vidotto, Giovana Mussi Polachini, Marina de Paula-Silva, Sônia Maria Oliani, Tiago Henrique, Rossana Verónica Mendoza López, Patrı́cia Maluf Cury, Fábio Daumas Nunes, J.F Gois-filho, Marcos Brasilino de Carvalho, Andréia Machado Leopoldino, Eloíza H. Tajara
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12885-015-1473-9

Quantitative proteomic analysis shows differentially expressed HSPB1 in glioblastoma as a discriminating short from long survival factor and NOVA1 as a differentiation factor between low-grade astrocytoma and oligodendroglioma
Cited by: 36
Author(s): Marcela Gimenez, Suely Kazue Nagahashi Marie, Sueli Mieko Oba-Shinjo, Miyuki Uno, Clarice Izumi, João Bosco Oliveira, José César Rosa
Software Mentions: 1
Published: about 10 years ago

10.1186/s12934-020-01358-5

Secretion of a low and high molecular weight β-glycosidase by Yarrowia lipolytica
Cited by: 13
Author(s): Paul Swietalski, Frank Hetzel, Ines Seitl, Lutz Fischer
Software Mentions: 1
Published: about 5 years ago

10.1186/s12934-018-1006-8

Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
Cited by: 29
Author(s): Thomas Eng, Philipp Demling, Robin A. Herbert, Yan Chen, Veronica T. Benites, Joel Martin, Anna Lipzen, Edward E. K. Baidoo, Lars M. Blank, Young-Mo Kim, Aindrila Mukhopadhyay
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12920-019-0576-6

Population structure and transmission modes of indigenous typhoid in Taiwan
Cited by: 5
Author(s): Kaiyu Wang, De-Jen Lee, Shian-Sen Shie, Chih-Jung Chen
Software Mentions: 1
Published: almost 6 years ago

10.15698/mic2017.09.589

Farnesol inhibits translation to limit growth and filamentation in C. albicans and S. cerevisiae
Cited by: 21
Author(s): Nkechi Eucharia Egbe, Tawni Dornelles, Caroline Mary Paget, Lydia M. Castelli, Mark P. Ashe
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0084471

Elevated Peptides in Lung Lavage Fluid Associated with Bronchiolitis Obliterans Syndrome
Cited by: 4
Author(s): Matthew D. Stone, Stephen B. Harvey, Gary L. Nelsestuen, Cavan Reilly, Marshall I. Hertz, Chris H. Wendt
Software Mentions: 1
Published: over 11 years ago

10.1111/1751-7915.12706

Functional characterization of LotP from <scp>L</scp> iberibacter asiaticus 
Cited by: 9
Author(s): Flavia del Valle Loto, Janelle F. Coyle, Kaylie A. Padgett, Fernando A. Pagliai, C. L. Gardner, Graciela L. Lorca, Claudio F. González
Software Mentions: 1
Published: over 8 years ago

10.1186/s12916-018-1136-1

An exploratory study examining how nano-liquid chromatography–mass spectrometry and phosphoproteomics can differentiate patients with advanced fibrosis and higher percentage collagen in non-alcoholic fatty liver disease
Cited by: 7
Author(s): Zobair M. Younossi, Azza Karrar, Mariaelena Pierobon, Aybike Birerdinc, Maria Stepanova, Dinan Abdelatif, Zahra Younoszai, Thomas L. Jeffers, Sean Felix, Kianoush Jeiran, Alex Hodge, Weidong Zhou, Fanny Monge, Lakshmi Alaparthi, Vikas Chandhoke, Zachary Goodman, Emanuel F. Petricoin
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12885-020-07111-w

Proteomics reveals a therapeutic vulnerability via the combined blockade of APE1 and autophagy in lung cancer A549 cells
Cited by: 11
Author(s): Shuting Pan, Jianguo Zhou, Fang Yang, Shu‐Feng Zhou, Tao Ren
Software Mentions: 1
Published: about 5 years ago

10.3390/antiox9090862

NHERF1 Loss Upregulates Enzymes of the Pentose Phosphate Pathway in Kidney Cortex
Cited by: 3
Author(s): Adrienne M. Bushau-Sprinkle, Michelle T. Barati, Kenneth B. Gagnon, Syed J. Khundmiri, Kathleen Kitterman, Bradford G. Hill, Amanda R. Sherwood, Michael L. Merchant, N. Shesh, Sudhir Srivastava, Barbara J. Clark, Leah J. Siskind, Michael E. Brier, Jessica Hata, Eleanor Lederer
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0126243

A Draft Map of Rhesus Monkey Tissue Proteome for Biomedical Research
Cited by: 2
Author(s): Jingyun Lee, Kimberly Q. McKinney, Yong-Yook Lee, Hae-Na Chung, Antonis J. Pavlopoulos, K. Y. Jung, Woong‐Ki Kim, Marcelo J. Kuroda, David K. Han, Sunil Hwang
Software Mentions: 1
Published: about 10 years ago

10.1039/c8mt00239h

Copper stress in Staphylococcus aureus leads to adaptive changes in central carbon metabolism
Cited by: 46
Author(s): Emma Tarrant, Gustavo Pelicioli Riboldi, Matthew R. McIlvin, Jack Alan Stevenson, Anna Barwinska-Sendra, Louisa J Stewart, Mak A. Saito, Kevin J. Waldron
Software Mentions: 1
Published: over 6 years ago

10.1186/s12865-017-0221-0

Mercury alters endogenous phosphorylation profiles of SYK in murine B cells
Cited by: 6
Author(s): Joseph A. Caruso, Nicholas J. Carruthers, Namhee Shin, Randall F. Gill, Paul M. Stemmer, Allen J. Rosenspire
Software Mentions: 1
Published: about 8 years ago

10.1590/0074-02760170340

Identification of the alpha-enolase P46 in the extracellular membrane vesicles of Bacteroides fragilis
Cited by: 3
Author(s): Thaís B. Ferreira, Camilla Nunes Dos Reis Trindade, Petra Bell, André Teixeira-Ferreira, Jonás Perales, Rossiane C. Vommaro, Regina Maria Cavalcanti Pilotto Domingues, Eliane de Oliveira Ferreira
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pntd.0006443

Aminopeptidase secreted by Chromobacterium sp. Panama inhibits dengue virus infection by degrading the E protein
Cited by: 40
Author(s): Raúl G. Saraiva, Jingru Fang, Sang‐Wook Kang, Yesseinia I. Angleró-Rodríguez, Yuemei Dong, George Dimopoulos
Software Mentions: 1
Published: over 7 years ago

10.3390/medsci6010008

The Role of Cadaverine Synthesis on Pneumococcal Capsule and Protein Expression
Cited by: 10
Author(s): Mary F. Nakamya, Moses B. Ayoola, Seongbin Park, Leslie A. Shack, Edwin Swiatlo, Bindu Nanduri
Software Mentions: 1
Published: over 7 years ago

10.1186/s12865-016-0154-z

Cryptic protein-protein interaction motifs in the cytoplasmic domain of MHCI proteins
Cited by: 4
Author(s): Karla K. Frietze, Adlai Pappy, Jack W. Melson, Emily E. O’Driscoll, Carolyn M. Tyler, David H. Perlman, Lisa M. Boulanger
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pntd.0004988

Characterizing the Syphilis-Causing Treponema pallidum ssp. pallidum Proteome Using Complementary Mass Spectrometry
Cited by: 25
Author(s): Kara Osbak, Stanley Houston, Karen V. Lithgow, Conor J. Meehan, Michal Strouhal, David Šmajs, Caroline E. Cameron, Xaveer Van Ostade, Chris Kenyon, Geert A. Van Raemdonck
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pntd.0004085

Identification of Newly Synthesized Proteins by Echinococcus granulosus Protoscoleces upon Induction of Strobilation
Cited by: 21
Author(s): João Antônio Debarba, Karina Mariante Monteiro, Hércules Moura, John R. Barr, Henrique Bunselmeyer Ferreira, Arnaldo Zaha
Software Mentions: 1
Published: almost 10 years ago

10.3390/medicines3030023

Characterisation of Bone Beneficial Components from Australian Wallaby Bone
Cited by: 0
Author(s): Weiguo Lao, Xiaoli Jin, Yi Tan, Linda Xiao, Matthew P. Padula, David Bishop, Brian Reedy, Madeleine Ong, Mohammad Amjad Kamal, Xianqin Qu
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pntd.0004688

Tegument Glycoproteins and Cathepsins of Newly Excysted Juvenile Fasciola hepatica Carry Mannosidic and Paucimannosidic N-glycans
Cited by: 30
Author(s): Garcia-Campos Andres, Ravidà Alessandra, Dieu Linh Nguyen, Krystyna Cwiklinski, John P. Dalton, Cornelis H. Hokke, Sandra M. O’Neill, Grace Mulcahy
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pntd.0002151

A Potential Role for the Interaction of Wolbachia Surface Proteins with the Brugia malayi Glycolytic Enzymes and Cytoskeleton in Maintenance of Endosymbiosis
Cited by: 36
Author(s): Elena Melnikow, Shulin Xu, Jing Liu, Aaron Bell, Elodie Ghedin, Thomas R. Unnasch, Sara Lustigman
Software Mentions: 1
Published: over 12 years ago

10.1155/2015/619480

Molecular and Biochemical Characterization of Recombinant Guinea Pig Tumor Necrosis Factor-Alpha
Cited by: 2
Author(s): Vijaya R. Dirisala, Amminikutty Jeevan, Lan H. Ly, David N. McMurray
Software Mentions: 1
Published: over 10 years ago

10.1155/2019/7479107

Matrix Metalloproteinase-9-Dependent Release of IL-1βby Human Eosinophils
Cited by: 20
Author(s): Stéphane Esnault, Elizabeth A. Kelly, Sean H Johnson, Larissa P. Delain, Madeline J Haedt, Andrea Noll, Nathan Sandbo, Nizar N. Jarjour
Software Mentions: 1
Published: over 6 years ago

10.1186/s12885-016-2211-7

Mitogen-activated protein kinase signaling causes malignant melanoma cells to differentially alter extracellular matrix biosynthesis to promote cell survival
Cited by: 13
Author(s): Anna Afasizheva, Alexus Devine, Heather Tillman, King Leung Fung, Wilfred D. Vieira, Benjamin H. Blehm, Yorihisa Kotobuki, Ben Busby, Emily I. Chen, Kandice Tanner
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pntd.0003375

Peptidases Compartmentalized to the Ascaris suum Intestinal Lumen and Apical Intestinal Membrane
Cited by: 12
Author(s): Douglas P. Jasmer, Bruce A. Rosa, Makedonka Mitreva
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0004951

Differential Gel Electrophoresis (DIGE) Evaluation of Naphthoimidazoles Mode of Action: A Study in Trypanosoma cruzi Bloodstream Trypomastigotes
Cited by: 11
Author(s): Giselle Villa Flor Brunoro, Vítor Marcel Faça, Marcelle Almeida Caminha, André Teixeira da Silva Ferreira, Monique Ramos de Oliveira Trugilho, Kelly C. G. de Moura, Jonás Perales, Richard H. Valente, Rubem Figueiredo Sadok Menna-Barreto
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.matbio.2020.02.005

Basement membrane ligands initiate distinct signalling networks to direct cell shape
Cited by: 36
Author(s): Michael J. Randles, Franziska Lausecker, Jonathan D. Humphries, Adam Byron, Simon J. Clark, Jeffrey H. Miner, Roy Zent, Rachel Lennon
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.mtbio.2020.100066

Comparative proteomic analysis of human mesenchymal stromal cell behavior on calcium phosphate ceramics with different osteoinductive potential
Cited by: 13
Author(s): Ziryan Othman, Ronny Mohren, Berta Cillero‐Pastor, Zhao-Qing Shen, Y.S.N.W. Lacroix, Alexander P. M. Guttenplan, Zeinab Tahmasebi Birgani, Lars Eijssen, Theo M. Luider, Sabine van Rijt, Pamela Habibović
Software Mentions: 1
Published: about 5 years ago

10.3390/ma13225187

Proteomic Analysis of Porcine-Derived Collagen Membrane and Matrix
Cited by: 9
Author(s): Jung Seok Lee, Goran Mitulović, Layla Panahipour, Reinhard Gruber
Software Mentions: 1
Published: over 4 years ago

10.1186/s12864-016-2456-1

Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)
Cited by: 31
Author(s): Klaus Neuhaus, Richard Landstorfer, Lea Fellner, Svenja Simon, Andrea Schafferhans, Tatyana Goldberg, Harald Marx, Olga N. Ozoline, Burkhard Rost, Bernhard Küster, Daniel A. Keim, Siegfried Scherer
Software Mentions: 1
Published: over 9 years ago

10.1186/s12885-016-2331-0

Expression of the cereblon binding protein argonaute 2 plays an important role for multiple myeloma cell growth and survival
Cited by: 33
Author(s): Qinqin Xu, Yue Xian Hou, Paul Langlais, Patrick Erickson, James Zhu, Chao Shi, Moulun Luo, Yuanxiao Zhu, Ye Xu, Lawrence J. Mandarino, Keith Stewart, Xiu Bao Chang
Software Mentions: 1
Published: about 9 years ago

10.3390/md17080436

Transcriptomic and Proteomic Analysis of the Tentacles and Mucus of Anthopleura dowii Verrill, 1869
Cited by: 18
Author(s): Santos Ramírez-Carreto, Rosario Vera-Estrella, Tobías Portillo-Bobadilla, Alexei F. Licea-Navarro, Johanna Bernáldez-Sarabia, E. Rudiño-Piñera, Jérôme Verleyen, Estefanía Rodríguez, Claudia Rodríguez-Almazán
Software Mentions: 1
Published: about 6 years ago

10.3390/md15080246

The Neuroprotective Marine Compound Psammaplysene A Binds the RNA-Binding Protein HNRNPK
Cited by: 8
Author(s): Marco Boccitto, Nayoung Lee, Satoshi Sakamoto, Lynn A. Spruce, Hiroshi Handa, Jon Clardy, Steven H. Seeholzer, Robert G. Kalb
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-11-685

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels
Cited by: 77
Author(s): Andreas O. Helbig, Sara Rosati, Pim W W M Pijnappel, Bas van Breukelen, Marc Timmers, Shabaz Mohammed, Monique Slijper, Albert J. R. Heck
Software Mentions: 1
Published: over 14 years ago

10.3390/md17070413

Identification of A Novel Antibacterial Peptide from Atlantic Mackerel belonging to the GAPDH-Related Antimicrobial Family and Its In Vitro Digestibility
Cited by: 22
Author(s): Clément Offret, Ismaı̈l Fliss, Laurent Bazinet, André Marette, Lucie Beaulieu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pntd.0001002

A Proteomic and Cellular Analysis of Uropods in the Pathogen Entamoeba histolytica
Cited by: 32
Author(s): Jacques Marquay Markiewicz, Sylvie Syan, Chung-Chau Hon, Christian Weber, Daniela M. Faust, Nancy Guillén
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pgen.1004057

Molecular Characterization of Host-Specific Biofilm Formation in a Vertebrate Gut Symbiont
Cited by: 123
Author(s): Steven A. Frese, Donald MacKenzie, Daniel A. Peterson, Robert Schmaltz, Teresa Fangman, You Zhou, Chaomei Zhang, Andrew K. Benson, Liz A. Cody, Francis Mulholland, Nathalie Juge, Jens Walter
Software Mentions: 1
Published: over 11 years ago

10.3390/md17010002

Spinochrome D Attenuates Doxorubicin-Induced Cardiomyocyte Death via Improving Glutathione Metabolism and Attenuating Oxidative Stress
Cited by: 31
Author(s): Chang Shin Yoon, Hyoung Kyu Kim, Natalia P. Mishchenko, Е. А. Васильева, Sergey A. Fedoreyev, Valentin A. Stonik, Jin Han
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-15-1058

Patterns of gene expression associated with recovery and injury in heat-stressed rats
Cited by: 29
Author(s): Jonathan D. Stallings, Danielle L. Ippolito, V. Rakesh, Christine E. Baer, William E. Dennis, Bryan G. Helwig, David A. Jackson, Lisa R. Leon, John A. Lewis, Jaques Reifman
Software Mentions: 1
Published: over 11 years ago

10.1186/1472-6750-10-62

Engineering of N. benthamiana L. plants for production of N-acetylgalactosamine-glycosylated proteins - towards development of a plant-based platform for production of protein therapeutics with mucin type O-glycosylation
Cited by: 44
Author(s): Sasha M. Daskalova, Josiah E. Radder, Zbigniew A. Cichacz, Sam H Olsen, George Tsaprailis, Hugh S. Mason, Linda C. Lopez
Software Mentions: 1
Published: over 15 years ago

10.3390/ani11051338

Early Heat Exposure Effects on Proteomic Changes of the Broiler Liver under Acute Heat Stress
Cited by: 1
Author(s): Darae Kang, Kwan Seob Shim
Software Mentions: 1
Published: about 4 years ago

10.1186/s40478-019-0660-3

The APMAP interactome reveals new modulators of APP processing and beta-amyloid production that are altered in Alzheimer’s disease
Cited by: 20
Author(s): Hermeto Gerber, Sébastien Mosser, Benjamin Boury-Jamot, Michael Stumpe, Alessandra Piersigilli, Christine Goepfert, Jörn Dengjel, Urs Albrecht, Fulvio Magara, Patrick C. Fraering
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0001442

Novel Structural Components of the Ventral Disc and Lateral Crest in Giardia intestinalis
Cited by: 58
Author(s): Kari D. Hagen, Matthew P. Hirakawa, Susan A. House, Cindi L. Schwartz, Jonathan K Pham, Michael J. Cipriano, Moises J. De La Torre, Albert C. Sek, Gary Du, Brystal M. Forsythe, Scott C. Dawson
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pgen.1001196

DNA Methylation and Normal Chromosome Behavior in Neurospora Depend on Five Components of a Histone Methyltransferase Complex, DCDC
Cited by: 92
Author(s): Zachary A. Lewis, Keyur K. Adhvaryu, Shinji Honda, Anthony L. Shiver, Marijn Knip, Ragna Sack, Eric U. Selker
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pntd.0007960

Annexin A2 depletion exacerbates the intracerebral microhemorrhage induced by acute rickettsia and Ebola virus infections
Cited by: 7
Author(s): Zhengchen Su, Qing Chang, Aleksandra Drelich, Thomas R. Shelite, Barbara M. Judy, Yakun Liu, Jie Xiao, Changchen Zhou, Xi He, Yang Jin, Taís B. Saito, Shao-Jun Tang, Lynn Soong, Maki Wakamiya, Xiang Fang, Alexander Bukreyev, Thomas G. Ksiazek, William K. Russell, Bin Gong
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pntd.0009638

Sandfly Fever Sicilian Virus-Leishmania major co-infection modulates innate inflammatory response favoring myeloid cell infections and skin hyperinflammation
Cited by: 10
Author(s): Ellen Heirwegh, Emily MacLean, Jinlei He, Shaden Kamhawi, Selena M. Sagan, Martin Olivier
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pgen.1007011

Formation of a TBX20-CASZ1 protein complex is protective against dilated cardiomyopathy and critical for cardiac homeostasis
Cited by: 19
Author(s): Leslie Kennedy, Erin Kaltenbrun, Todd M. Greco, Brenda Temple, Laura E. Herring, Ileana M. Cristea, Frank L. Conlon
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pntd.0002939

Proteomic Analysis of Adult Ascaris suum Fluid Compartments and Secretory Products
Cited by: 53
Author(s): James F. Chehayeb, Alan P. Robertson, R. J. Martin, Timothy G. Geary
Software Mentions: 1
Published: about 11 years ago

10.1186/s12936-015-0655-x

Effects of cyclin-dependent kinase inhibitor Purvalanol B application on protein expression and developmental progression in intra-erythrocytic Plasmodium falciparum parasites
Cited by: 5
Author(s): Kristen M. Bullard, Carolyn J. Broccardo, Susan M. Keenan
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pntd.0001370

Proteomic Analysis of Excretory-Secretory Products of Heligmosomoides polygyrus Assessed with Next-Generation Sequencing Transcriptomic Information
Cited by: 76
Author(s): Yovany Moreno, P Gros, Mifong Tam, Mariela Segura, Rajesh M. Valanparambil, Timothy G. Geary, Mary M. Stevenson
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pntd.0009442

Aedes aegypti SNAP and a calcium transporter ATPase influence dengue virus dissemination
Cited by: 6
Author(s): Alejandro Marín-López, Junjun Jiang, Yuchen Wang, Yongguo Cao, Tyler MacNeil, Andrew K. Hastings, Erol Fikrig
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pntd.0001643

Proteomic Analysis of the Cyst Stage of Entamoeba histolytica
Cited by: 40
Author(s): Ibne Karim M. Ali, Rashidul Haque, A. K. Siddique, Nicholas E. Sherman, Sean A. Gray, Gerard A. Cangelosi, William A. Petri
Software Mentions: 1
Published: about 13 years ago

10.1371/journal.pgen.1005837

Adaptive Remodeling of the Bacterial Proteome by Specific Ribosomal Modification Regulates Pseudomonas Infection and Niche Colonisation
Cited by: 45
Author(s): Richard Little, Lucia Grenga, Gerhard Saalbach, Alexandra M. Howat, Sebastian Pfeilmeier, Eleftheria Trampari, Jacob G. Malone
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1004987

Proteotoxic Stress Induces Phosphorylation of p62/SQSTM1 by ULK1 to Regulate Selective Autophagic Clearance of Protein Aggregates
Cited by: 237
Author(s): Junghyun Lim, M. Lenard Lachenmayer, Shuai Wu, Wenchao Li, Mondira Kundu, Rong Wang, Masaaki Komatsu, Young J. Oh, Yanxiang Zhao, Zhenyu Yue
Software Mentions: 1
Published: over 10 years ago

10.1186/1475-2875-10-318

Mitochondrial NAD+-dependent malic enzyme from Anopheles stephensi: a possible novel target for malaria mosquito control
Cited by: 8
Author(s): Jennifer Pon, Eleonora Napoli, Shirley Luckhart, Cecilia R Giulivi
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pntd.0009027

Major antigen and paramyosin proteins as candidate biomarkers for serodiagnosis of canine infection by zoonotic Onchocerca lupi
Cited by: 3
Author(s): Maria Stefanía Latrofa, Giuseppe Palmisano, Giada Annoscia, Ciro Leonardo Pierri, Ramaswamy Chandrashekar, Domenico Otranto
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1006238

Pfh1 Is an Accessory Replicative Helicase that Interacts with the Replisome to Facilitate Fork Progression and Preserve Genome Integrity
Cited by: 34
Author(s): Karin R. McDonald, Amanda J. Guise, Parham Pourbozorgi-Langroudi, Ileana M. Cristea, Virginia A. Zakian, John A. Capra, Nasim Sabouri
Software Mentions: 1
Published: almost 9 years ago

10.26508/lsa.202000742

Leishmania-infected macrophages release extracellular vesicles that can promote lesion development
Cited by: 23
Author(s): Anna Gioseffi, Timothy Hamerly, Kha Van, Naixin Zhang, Rhoel R. Dinglasan, Phillip A. Yates, Peter E. Kima
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1003960

CRIS—A Novel cAMP-Binding Protein Controlling Spermiogenesis and the Development of Flagellar Bending
Cited by: 43
Author(s): Anke Miriam Krähling, Luis J. Álvarez, Katharina Debowski, Qui Van, Monika Gunkel, Stephan Irsen, Ashraf Al‐Amoudi, Timo Strünker, Elisabeth Kremmer, Eberhard Krause, Ingo Voigt, Simone Wörtge, Ari Waisman, Ingo Weyand, Reinhard Seifert, U. Benjamin Kaupp, Dagmar Wachten
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pntd.0003731

Tissue Localization and Extracellular Matrix Degradation by PI, PII and PIII Snake Venom Metalloproteinases: Clues on the Mechanisms of Venom-Induced Hemorrhage
Cited by: 77
Author(s): Cristina Herrera, Teresa Escalante, Mathieu Benoit Voisin, Alexandra Rucavado, Diego Morazán, Jéssica K. A. Macêdo, Juan J. Calvete, Libia Sanz, Sussan Nourshargh, José Marı́a Gutiérrez, Jay W. Fox
Software Mentions: 1
Published: over 10 years ago

10.26508/lsa.201900547

The iron–sulfur helicase DDX11 promotes the generation of single-stranded DNA for CHK1 activation
Cited by: 15
Author(s): Anna Katharina Simon, Sandra Kummer, Sonja Wild, Aleksandra Lezaja, Federico Teloni, Stanisław K. Jóźwiakowski, Matthias Altmeyer, Kerstin Gari
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pntd.0002442

Comparison of Phylogeny, Venom Composition and Neutralization by Antivenom in Diverse Species of Bothrops Complex
Cited by: 127
Author(s): Leijiane F. Sousa, Carolina Alves Nicolau, Pedro S. Peixoto, Juliana L. Bernardoni, Sâmella Silva de Oliveira, José Antônio Portes-Junior, Rosa Helena Veras Mourão, Isa Lima-dos-Santos, Ida Sigueko Sano-Martins, Hipócrates de Menezes Chalkidis, Richard H. Valente, Ana Maria Moura-da-Silva
Software Mentions: 1
Published: almost 12 years ago

10.1186/s12864-016-3472-x

The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions
Cited by: 10
Author(s): Pamela Vazquez-Gutierrez, Marc J. A. Stevens, Peter Gehrig, Simon Barkow-Oesterreicher, Christophe Lacroix, Christophe Chassard
Software Mentions: 1
Published: over 8 years ago

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