Ecosyste.ms: Papers

10.3390/cancers13143618

TRAF6 Phosphorylation Prevents Its Autophagic Degradation and Re-Shapes LPS-Triggered Signaling Networks
Cited by: 3
Author(s): Julia Busch, Rita Moreno, Laureano de la Vega, Vera V. Saul, Susanne Bacher, Felix von Zweydorf, Marius Ueffing, Axel Weber, Christian Johannes Gloeckner, Uwe Linne, Michael Kracht, M. Lienhard Schmitz
Software Mentions: 2
Published: over 3 years ago

10.1186/s12862-021-01910-w

Odorant-binding proteins in canine anal sac glands indicate an evolutionarily conserved role in mammalian chemical communication
Cited by: 5
Author(s): Sunita Janssenswillen, Kim Roelants, Sébastien Carpentier, H. de Rooster, Mieke Metzemaekers, Bram Vanschoenwinkel, Paul Proost, Franky Bossuyt
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0140650

Sperm Proteome Maturation in the Mouse Epididymis
Cited by: 83
Author(s): Sheri Skerget, Matthew Rosenow, Konstantinos Pétritis, Timothy L. Karr
Software Mentions: 2
Published: about 9 years ago

10.1186/s12964-016-0133-2

The arabidopsis cyclic nucleotide interactome
Cited by: 34
Author(s): Lara Donaldson, Stuart Meier, Chris Gehring
Software Mentions: 2
Published: over 8 years ago

10.3390/v13040675

Epstein-Barr Virus LMP1 Modulates the CD63 Interactome
Cited by: 9
Author(s): Mujeeb R. Cheerathodi, Dingani Nkosi, Allaura S. Cone, Sara B. York, David G. Meckes
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0115213

Microtubule-Dependent Modulation of Adhesion Complex Composition
Cited by: 37
Author(s): Daniel Ng, Jonathan D. Humphries, Adam Byron, Angélique Millon‐Frémillon
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0215267

Muscle fiber hypertrophy in response to 6 weeks of high-volume resistance training in trained young men is largely attributed to sarcoplasmic hypertrophy
Cited by: 52
Author(s): Cody T. Haun, Christopher G. Vann, Shelby C. Osburn, Petey W. Mumford, Paul A. Roberson, Matthew A. Romero, Carlton D. Fox, Christopher Johnson, Hailey A. Parry, Andreas N. Kavazis, Jordan R. Moon, Veera L.D. Badisa, Benjamin M. Mwashote, Victor Ibeanusi, Kaelin C. Young, Michael D. Roberts
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0221669

Cholinergic-like neurons carrying PSEN1 E280A mutation from familial Alzheimer’s disease reveal intraneuronal sAPPβ fragments accumulation, hyperphosphorylation of TAU, oxidative stress, apoptosis and Ca2+ dysregulation: Therapeutic implications
Cited by: 16
Author(s): Viviana Soto-Mercado, Miguel Mendivil-Perez, Carlos Vélez-Pardo, Francisco Lopera, Marlene Jiménez-Del-Río
Software Mentions: 2
Published: over 4 years ago

10.12688/wellcomeopenres.16072.1

Global proteomic analysis of insulin receptor interactors in glomerular podocytes
Cited by: 1
Author(s): Salman Hosawi, Jonathan D. Humphries, Richard J M Coward, David Knight, Rachel Lennon
Software Mentions: 2
Published: about 4 years ago

10.3390/microorganisms9081593

Glucosidase Inhibitors Screening in Microalgae and Cyanobacteria Isolated from the Amazon and Proteomic Analysis of Inhibitor Producing Synechococcus sp. GFB01
Cited by: 6
Author(s): Diana Gomes Gradíssimo, Vivian Cássia Oliveira da Silva, Luciana Pereira Xavier, Sidney Vasconcelos do Nascimento, Rafael Borges da Silva Valadares, Sílvia Maria Mathes Faustino, Maria Paula Cruz Schneider, Agenor Valadares Santos
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0188105

Profiling of proteins secreted in the bovine oviduct reveals diverse functions of this luminal microenvironment
Cited by: 36
Author(s): Viju Vijayan Pillai, Darren Weber, Brett S. Phinney, Vimal Selvaraj
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0220568

Delineating the role of FANCA in glucose-stimulated insulin secretion in β cells through its protein interactome
Cited by: 6
Author(s): Dragana Lagundžin, Wen Feng Hu, Henry C.-H. Law, Kimiko L. Krieger, Fangfang Qiao, Emalie J. Clement, Andjela Drincic, Olgica Nedić, Michael J. Naldrett, Sophie Alvarez, Nicholas T. Woods
Software Mentions: 2
Published: about 5 years ago

10.1038/cdd.2015.22

XLS (c9orf142) is a new component of mammalian DNA double-stranded break repair
Cited by: 61
Author(s): Andrew Craxton, Joanna Somers, Deeksha Munnur, Rebekah Jukes-Jones, Kelvin Cain, Michal Malewicz
Software Mentions: 2
Published: over 9 years ago

10.1242/dev.185421

Ykt6-dependent endosomal recycling is required for Wnt secretion in the <i>Drosophila</i> wing epithelium
Cited by: 13
Author(s): Karen Linnemannstöns, Leonie Witte, Pradhipa Karuna, Jeanette Clarissa Kittel, Adi Danieli, Denise Madeddu, Lena Nitsch, Mona Honemann‐Capito, Ferdi Grawe, Andreas Wodarz, Julia Christina Gross
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA119.012517

Phosphorylation of the overlooked tyrosine 310 regulates the structure, aggregation, and microtubule- and lipid-binding properties of Tau
Cited by: 27
Author(s): Nadine Ait-Bouziad, Anass Chiki, Galina Limorenko, Shifeng Xiao, David Eliezer, Hilal A. Lashuel
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0025561

Functional Analysis of the Magnetosome Island in Magnetospirillum gryphiswaldense: The mamAB Operon Is Sufficient for Magnetite Biomineralization
Cited by: 152
Author(s): Anna Lohße, Susanne Ullrich, Emanuel Katzmann, Sarah Borg, G. Wanner, Michael Richter, Birgit Voigt, Thomas Schweder, Dirk Schüler
Software Mentions: 1
Published: about 13 years ago

10.1186/s40168-020-00845-6

Gut microbiota-derived indole 3-propionic acid protects against radiation toxicity via retaining acyl-CoA-binding protein
Cited by: 93
Author(s): He Xiao, Ming Cui, Yuan Li, Jing Dong, Shuqin Zhang, Changchun Zhu, Mian Jiang, Tong Zhu, Bin Wang, Haichao Wang, Saijun Fan
Software Mentions: 1
Published: over 4 years ago

10.1186/s12866-020-01964-8

The role of the msaABCR operon in implant-associated chronic osteomyelitis in Staphylococcus aureus USA300 LAC
Cited by: 9
Author(s): Gyan S. Sahukhal, Michelle Tucci, Hamed Benghuzzi, Gerri Wilson, Mohamed O. Elasri
Software Mentions: 1
Published: about 4 years ago

10.1128/MRA.01280-18

The Foliar Endophyte <i>Phialocephala scopiformis</i> DAOMC 229536 Proteome When Grown on Wood Used as the Sole Carbon Source
Cited by: 2
Author(s): Jennifer M. Bhatnagar, Grzegorz Sabat, Daniel Cullen
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0114594

CRISPR-Cas9-Based Knockout of the Prion Protein and Its Effect on the Proteome
Cited by: 49
Author(s): Mohadeseh Mehrabian, Brethour Dylan, Sarah E MacIsaac, Jin Kyu Kim, C. Geeth Gunawardana, Hansen Wang, Gerold Schmitt‐Ulms
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2180-14-70

The CJIE1 prophage of Campylobacter jejuni affects protein expression in growth media with and without bile salts
Cited by: 16
Author(s): Clifford G. Clark, Patrick Chong, Stuart McCorrister, Philippe Simon, Matthew Walker, David M. Lee, Kimberly Nguy, Keding Cheng, Matthew W. Gilmour, Garrett Westmacott
Software Mentions: 1
Published: almost 11 years ago

10.1186/1472-6882-12-S1-P22

P01.22. Identification of a peptide biomarker from bromelain, an extract of ananas comosus merr, using LC-SRM/MS
Cited by: 0
Author(s): Eric R. Secor, Steven M. Szczepanek, Linda Guernsey, Lawrence K. Silbart, Roger S. Thrall, Dong Qi Han
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0214059

HTLV-1 Tax-1 interacts with SNX27 to regulate cellular localization of the HTLV-1 receptor molecule, GLUT1
Cited by: 17
Author(s): Jacob Al-Saleem, Wessel P. Dirksen, Michael P. Martinez, Nikoloz Shkriabai, Mamuka Kvaratskhelia, Lee Ratner, Patrick L. Green
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0149132

Characterization and Vaccine Potential of Outer Membrane Vesicles Produced by Haemophilus parasuis
Cited by: 39
Author(s): William D. McCaig, Crystal L. Loving, Holly R. Hughes, Susan L. Brockmeier
Software Mentions: 1
Published: over 8 years ago

10.1099/mic.0.070755-0

Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM
Cited by: 92
Author(s): Brant R. Johnson, Kurt Selle, Sarah O’Flaherty, Yong Jun Goh, Todd R. Klaenhammer
Software Mentions: 1
Published: about 11 years ago

10.1002/mbo3.1012

Proteomic analysis of <i>Aspergillus niger</i> 3.316 under heat stress
Cited by: 10
Author(s): Xiaogeng Deng, Bin Du, Fengmei Zhu, Yanan Gao, Jun Li
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0095007

Absence of Metalloprotease GP63 Alters the Protein Content of Leishmania Exosomes
Cited by: 89
Author(s): Kasra Hassani, Marina Tiemi Shio, Caroline Martel, Denis Faubert, Martin Olivier
Software Mentions: 1
Published: over 10 years ago

10.1264/jsme2.ME15195

Proteome Analyses of Soil Bacteria Grown in the Presence of Potato Suberin, a Recalcitrant Biopolymer
Cited by: 6
Author(s): Amadou Sidibé, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Lauriane Giroux, Vicky Toussaint, Carole Beaulieu
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2180-11-245

Biofilm and planktonic pneumococci demonstrate disparate immunoreactivity to human convalescent sera
Cited by: 28
Author(s): Carlos J. Sánchez, Brady J. Hurtgen, Anel Lizcano, Pooja Shivshankar, Garry T. Cole, Carlos J. Orihuela
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2121-14-6

GxcC connects Rap and Rac signaling during Dictyostelium development
Cited by: 13
Author(s): Katarzyna Plak, Douwe M. Veltman, Fabrizia Fusetti, Jetze Beeksma, Fernando Rivero, Peter J.M. van Haastert, Arjan Kortholt
Software Mentions: 1
Published: almost 12 years ago

10.1264/jsme2.ME16110

Physical, Chemical and Proteomic Evidence of Potato Suberin Degradation by the Plant Pathogenic Bacterium &lt;i&gt;Streptomyces scabiei&lt;/i&gt;
Cited by: 17
Author(s): Carole Beaulieu, Amadou Sidibé, Raoudha Jabloune, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Ernest Monga, Mark A. Bernards
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0059462

Alix Serves as an Adaptor That Allows Human Parainfluenza Virus Type 1 to Interact with the Host Cell ESCRT System
Cited by: 13
Author(s): Jim Boonyaratanakornkit, Henrick Schomacker, Peter L. Collins, Alexander Schmidt
Software Mentions: 1
Published: over 11 years ago

10.1186/s12866-020-02065-2

Differential production and secretion of potentially toxigenic extracellular proteins from hypervirulent Aeromonas hydrophila under biofilm and planktonic culture
Cited by: 13
Author(s): Priscilla C. Barger, Mark R. Liles, Benjamin H. Beck, Joseph C. Newton
Software Mentions: 1
Published: almost 4 years ago

10.1186/1475-2859-11-79

Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli
Cited by: 47
Author(s): Adrienne E. McKee, Becky J. Rutherford, Dylan Chivian, Edward Baidoo, Darmawi Juminaga, Dwight Kuo, Peter I. Benke, Jeffrey A. Dietrich, Magali Suzanne, Adam P. Arkin, Young-Mo Kim, Paul D. Adams, Jay D. Keasling, Swapnil R. Chhabra
Software Mentions: 1
Published: over 12 years ago

10.1186/s12934-016-0564-x

Proteomic analysis of the signaling pathway mediated by the heterotrimeric Gα protein Pga1 of Penicillium chrysogenum
Cited by: 15
Author(s): Ulises Carrasco-Navarro, Rosario Vera-Estrella, Bronwyn J. Barkla, Eduardo Zúñiga-León, Horacio Reyes‐Vivas, F Fernandez, Francisco Fierro
Software Mentions: 1
Published: about 8 years ago

10.1186/s12920-018-0382-6

Differentially expressed proteins in positive versus negative HNSCC lymph nodes
Cited by: 6
Author(s): Alessandra Vidotto, Giovana Mussi Polachini, Marina de Paula-Silva, Sônia Maria Oliani, Tiago Henrique, Rossana Verónica Mendoza López, Patrı́cia Maluf Cury, Fábio Daumas Nunes, J.F Gois-filho, Marcos Brasilino de Carvalho, Andréia Machado Leopoldino, Eloíza H. Tajara
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-015-1473-9

Quantitative proteomic analysis shows differentially expressed HSPB1 in glioblastoma as a discriminating short from long survival factor and NOVA1 as a differentiation factor between low-grade astrocytoma and oligodendroglioma
Cited by: 36
Author(s): Marcela Gimenez, Suely Kazue Nagahashi Marie, Sueli Mieko Oba-Shinjo, Miyuki Uno, Clarice Izumi, João Bosco Oliveira, José César Rosa
Software Mentions: 1
Published: over 9 years ago

10.1186/s12934-020-01358-5

Secretion of a low and high molecular weight β-glycosidase by Yarrowia lipolytica
Cited by: 13
Author(s): Paul Swietalski, Frank Hetzel, Ines Seitl, Lutz Fischer
Software Mentions: 1
Published: over 4 years ago

10.1186/s12934-018-1006-8

Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
Cited by: 29
Author(s): Thomas Eng, Philipp Demling, Robin A. Herbert, Yan Chen, Veronica T. Benites, Joel Martin, Anna Lipzen, Edward E. K. Baidoo, Lars M. Blank, Young-Mo Kim, Aindrila Mukhopadhyay
Software Mentions: 1
Published: about 6 years ago

10.1186/s12920-019-0576-6

Population structure and transmission modes of indigenous typhoid in Taiwan
Cited by: 5
Author(s): Kaiyu Wang, De-Jen Lee, Shian-Sen Shie, Chih-Jung Chen
Software Mentions: 1
Published: about 5 years ago

10.15698/mic2017.09.589

Farnesol inhibits translation to limit growth and filamentation in C. albicans and S. cerevisiae
Cited by: 21
Author(s): Nkechi Eucharia Egbe, Tawni Dornelles, Caroline Mary Paget, Lydia M. Castelli, Mark P. Ashe
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0084471

Elevated Peptides in Lung Lavage Fluid Associated with Bronchiolitis Obliterans Syndrome
Cited by: 4
Author(s): Matthew D. Stone, Stephen B. Harvey, Gary L. Nelsestuen, Cavan Reilly, Marshall I. Hertz, Chris H. Wendt
Software Mentions: 1
Published: almost 11 years ago

10.1111/1751-7915.12706

Functional characterization of LotP from <i> <scp>L</scp> iberibacter asiaticus </i>
Cited by: 9
Author(s): Flavia del Valle Loto, Janelle F. Coyle, Kaylie A. Padgett, Fernando A. Pagliai, C. L. Gardner, Graciela L. Lorca, Claudio F. González
Software Mentions: 1
Published: over 7 years ago

10.1186/s12916-018-1136-1

An exploratory study examining how nano-liquid chromatography–mass spectrometry and phosphoproteomics can differentiate patients with advanced fibrosis and higher percentage collagen in non-alcoholic fatty liver disease
Cited by: 7
Author(s): Zobair M. Younossi, Azza Karrar, Mariaelena Pierobon, Aybike Birerdinc, Maria Stepanova, Dinan Abdelatif, Zahra Younoszai, Thomas L. Jeffers, Sean Felix, Kianoush Jeiran, Alex Hodge, Weidong Zhou, Fanny Monge, Lakshmi Alaparthi, Vikas Chandhoke, Zachary Goodman, Emanuel F. Petricoin
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-020-07111-w

Proteomics reveals a therapeutic vulnerability via the combined blockade of APE1 and autophagy in lung cancer A549 cells
Cited by: 11
Author(s): Shuting Pan, Jianguo Zhou, Fang Yang, Shu‐Feng Zhou, Tao Ren
Software Mentions: 1
Published: over 4 years ago

10.3390/antiox9090862

NHERF1 Loss Upregulates Enzymes of the Pentose Phosphate Pathway in Kidney Cortex
Cited by: 3
Author(s): Adrienne M. Bushau-Sprinkle, Michelle T. Barati, Kenneth B. Gagnon, Syed J. Khundmiri, Kathleen Kitterman, Bradford G. Hill, Amanda R. Sherwood, Michael L. Merchant, N. Shesh, Sudhir Srivastava, Barbara J. Clark, Leah J. Siskind, Michael E. Brier, Jessica Hata, Eleanor Lederer
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0126243

A Draft Map of Rhesus Monkey Tissue Proteome for Biomedical Research
Cited by: 2
Author(s): Jingyun Lee, Kimberly Q. McKinney, Yong-Yook Lee, Hae-Na Chung, Antonis J. Pavlopoulos, K. Y. Jung, Woong‐Ki Kim, Marcelo J. Kuroda, David K. Han, Sunil Hwang
Software Mentions: 1
Published: over 9 years ago

10.1039/c8mt00239h

Copper stress in <i>Staphylococcus aureus</i> leads to adaptive changes in central carbon metabolism
Cited by: 46
Author(s): Emma Tarrant, Gustavo Pelicioli Riboldi, Matthew R. McIlvin, Jack Alan Stevenson, Anna Barwinska-Sendra, Louisa J Stewart, Mak A. Saito, Kevin J. Waldron
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12865-017-0221-0

Mercury alters endogenous phosphorylation profiles of SYK in murine B cells
Cited by: 6
Author(s): Joseph A. Caruso, Nicholas J. Carruthers, Namhee Shin, Randall F. Gill, Paul M. Stemmer, Allen J. Rosenspire
Software Mentions: 1
Published: over 7 years ago

10.1590/0074-02760170340

Identification of the alpha-enolase P46 in the extracellular membrane vesicles of Bacteroides fragilis
Cited by: 3
Author(s): Thaís B. Ferreira, Camilla Nunes Dos Reis Trindade, Petra Bell, André Teixeira-Ferreira, Jonás Perales, Rossiane C. Vommaro, Regina Maria Cavalcanti Pilotto Domingues, Eliane de Oliveira Ferreira
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0006443

Aminopeptidase secreted by Chromobacterium sp. Panama inhibits dengue virus infection by degrading the E protein
Cited by: 40
Author(s): Raúl G. Saraiva, Jingru Fang, Sang‐Wook Kang, Yesseinia I. Angleró-Rodríguez, Yuemei Dong, George Dimopoulos
Software Mentions: 1
Published: over 6 years ago

10.3390/medsci6010008

The Role of Cadaverine Synthesis on Pneumococcal Capsule and Protein Expression
Cited by: 10
Author(s): Mary F. Nakamya, Moses B. Ayoola, Seongbin Park, Leslie A. Shack, Edwin Swiatlo, Bindu Nanduri
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12865-016-0154-z

Cryptic protein-protein interaction motifs in the cytoplasmic domain of MHCI proteins
Cited by: 4
Author(s): Karla K. Frietze, Adlai Pappy, Jack W. Melson, Emily E. O’Driscoll, Carolyn M. Tyler, David H. Perlman, Lisa M. Boulanger
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pntd.0004988

Characterizing the Syphilis-Causing Treponema pallidum ssp. pallidum Proteome Using Complementary Mass Spectrometry
Cited by: 25
Author(s): Kara Osbak, Stanley Houston, Karen V. Lithgow, Conor J. Meehan, Michal Strouhal, David Šmajs, Caroline E. Cameron, Xaveer Van Ostade, Chris Kenyon, Geert A. Van Raemdonck
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pntd.0004085

Identification of Newly Synthesized Proteins by Echinococcus granulosus Protoscoleces upon Induction of Strobilation
Cited by: 21
Author(s): João Antônio Debarba, Karina Mariante Monteiro, Hércules Moura, John R. Barr, Henrique Bunselmeyer Ferreira, Arnaldo Zaha
Software Mentions: 1
Published: about 9 years ago

10.3390/medicines3030023

Characterisation of Bone Beneficial Components from Australian Wallaby Bone
Cited by: 0
Author(s): Weiguo Lao, Xiaoli Jin, Yi Tan, Linda Xiao, Matthew P. Padula, David Bishop, Brian Reedy, Madeleine Ong, Mohammad Amjad Kamal, Xianqin Qu
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pntd.0004688

Tegument Glycoproteins and Cathepsins of Newly Excysted Juvenile Fasciola hepatica Carry Mannosidic and Paucimannosidic N-glycans
Cited by: 30
Author(s): Garcia-Campos Andres, Ravidà Alessandra, Dieu Linh Nguyen, Krystyna Cwiklinski, John P. Dalton, Cornelis H. Hokke, Sandra M. O’Neill, Grace Mulcahy
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pntd.0002151

A Potential Role for the Interaction of Wolbachia Surface Proteins with the Brugia malayi Glycolytic Enzymes and Cytoskeleton in Maintenance of Endosymbiosis
Cited by: 36
Author(s): Elena Melnikow, Shulin Xu, Jing Liu, Aaron Bell, Elodie Ghedin, Thomas R. Unnasch, Sara Lustigman
Software Mentions: 1
Published: over 11 years ago

10.1155/2015/619480

Molecular and Biochemical Characterization of Recombinant Guinea Pig Tumor Necrosis Factor-Alpha
Cited by: 2
Author(s): Vijaya R. Dirisala, Amminikutty Jeevan, Lan H. Ly, David N. McMurray
Software Mentions: 1
Published: almost 10 years ago

10.1155/2019/7479107

Matrix Metalloproteinase-9-Dependent Release of IL-1<i>β</i>by Human Eosinophils
Cited by: 20
Author(s): Stéphane Esnault, Elizabeth A. Kelly, Sean H Johnson, Larissa P. Delain, Madeline J Haedt, Andrea Noll, Nathan Sandbo, Nizar N. Jarjour
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12885-016-2211-7

Mitogen-activated protein kinase signaling causes malignant melanoma cells to differentially alter extracellular matrix biosynthesis to promote cell survival
Cited by: 13
Author(s): Anna Afasizheva, Alexus Devine, Heather Tillman, King Leung Fung, Wilfred D. Vieira, Benjamin H. Blehm, Yorihisa Kotobuki, Ben Busby, Emily I. Chen, Kandice Tanner
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pntd.0003375

Peptidases Compartmentalized to the Ascaris suum Intestinal Lumen and Apical Intestinal Membrane
Cited by: 12
Author(s): Douglas P. Jasmer, Bruce A. Rosa, Makedonka Mitreva
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pntd.0004951

Differential Gel Electrophoresis (DIGE) Evaluation of Naphthoimidazoles Mode of Action: A Study in Trypanosoma cruzi Bloodstream Trypomastigotes
Cited by: 11
Author(s): Giselle Villa Flor Brunoro, Vítor Marcel Faça, Marcelle Almeida Caminha, André Teixeira da Silva Ferreira, Monique Ramos de Oliveira Trugilho, Kelly C. G. de Moura, Jonás Perales, Richard H. Valente, Rubem Figueiredo Sadok Menna-Barreto
Software Mentions: 1
Published: about 8 years ago

10.1016/j.matbio.2020.02.005

Basement membrane ligands initiate distinct signalling networks to direct cell shape
Cited by: 36
Author(s): Michael J. Randles, Franziska Lausecker, Jonathan D. Humphries, Adam Byron, Simon J. Clark, Jeffrey H. Miner, Roy Zent, Rachel Lennon
Software Mentions: 1
Published: over 4 years ago

10.1016/j.mtbio.2020.100066

Comparative proteomic analysis of human mesenchymal stromal cell behavior on calcium phosphate ceramics with different osteoinductive potential
Cited by: 13
Author(s): Ziryan Othman, Ronny Mohren, Berta Cillero‐Pastor, Zhao-Qing Shen, Y.S.N.W. Lacroix, Alexander P. M. Guttenplan, Zeinab Tahmasebi Birgani, Lars Eijssen, Theo M. Luider, Sabine van Rijt, Pamela Habibović
Software Mentions: 1
Published: over 4 years ago

10.3390/ma13225187

Proteomic Analysis of Porcine-Derived Collagen Membrane and Matrix
Cited by: 9
Author(s): Jung Seok Lee, Goran Mitulović, Layla Panahipour, Reinhard Gruber
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-016-2456-1

Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)
Cited by: 31
Author(s): Klaus Neuhaus, Richard Landstorfer, Lea Fellner, Svenja Simon, Andrea Schafferhans, Tatyana Goldberg, Harald Marx, Olga N. Ozoline, Burkhard Rost, Bernhard Küster, Daniel A. Keim, Siegfried Scherer
Software Mentions: 1
Published: over 8 years ago

10.1186/s12885-016-2331-0

Expression of the cereblon binding protein argonaute 2 plays an important role for multiple myeloma cell growth and survival
Cited by: 33
Author(s): Qinqin Xu, Yue Xian Hou, Paul Langlais, Patrick Erickson, James Zhu, Chao Shi, Moulun Luo, Yuanxiao Zhu, Ye Xu, Lawrence J. Mandarino, Keith Stewart, Xiu Bao Chang
Software Mentions: 1
Published: over 8 years ago

10.3390/md17080436

Transcriptomic and Proteomic Analysis of the Tentacles and Mucus of Anthopleura dowii Verrill, 1869
Cited by: 18
Author(s): Santos Ramírez-Carreto, Rosario Vera-Estrella, Tobías Portillo-Bobadilla, Alexei F. Licea-Navarro, Johanna Bernáldez-Sarabia, E. Rudiño-Piñera, Jérôme Verleyen, Estefanía Rodríguez, Claudia Rodríguez-Almazán
Software Mentions: 1
Published: over 5 years ago

10.3390/md15080246

The Neuroprotective Marine Compound Psammaplysene A Binds the RNA-Binding Protein HNRNPK
Cited by: 8
Author(s): Marco Boccitto, Nayoung Lee, Satoshi Sakamoto, Lynn A. Spruce, Hiroshi Handa, Jon Clardy, Steven H. Seeholzer, Robert G. Kalb
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-11-685

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels
Cited by: 77
Author(s): Andreas O. Helbig, Sara Rosati, Pim W W M Pijnappel, Bas van Breukelen, Marc Timmers, Shabaz Mohammed, Monique Slijper, Albert J. R. Heck
Software Mentions: 1
Published: almost 14 years ago

10.3390/md17070413

Identification of A Novel Antibacterial Peptide from Atlantic Mackerel belonging to the GAPDH-Related Antimicrobial Family and Its In Vitro Digestibility
Cited by: 22
Author(s): Clément Offret, Ismaı̈l Fliss, Laurent Bazinet, André Marette, Lucie Beaulieu
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1004057

Molecular Characterization of Host-Specific Biofilm Formation in a Vertebrate Gut Symbiont
Cited by: 123
Author(s): Steven A. Frese, Donald MacKenzie, Daniel A. Peterson, Robert Schmaltz, Teresa Fangman, You Zhou, Chaomei Zhang, Andrew K. Benson, Liz A. Cody, Francis Mulholland, Nathalie Juge, Jens Walter
Software Mentions: 1
Published: almost 11 years ago

10.3390/md17010002

Spinochrome D Attenuates Doxorubicin-Induced Cardiomyocyte Death via Improving Glutathione Metabolism and Attenuating Oxidative Stress
Cited by: 31
Author(s): Chang Shin Yoon, Hyoung Kyu Kim, Natalia P. Mishchenko, Е. А. Васильева, Sergey A. Fedoreyev, Valentin A. Stonik, Jin Han
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2164-15-1058

Patterns of gene expression associated with recovery and injury in heat-stressed rats
Cited by: 29
Author(s): Jonathan D. Stallings, Danielle L. Ippolito, V. Rakesh, Christine E. Baer, William E. Dennis, Bryan G. Helwig, David A. Jackson, Lisa R. Leon, John A. Lewis, Jaques Reifman
Software Mentions: 1
Published: almost 11 years ago

10.1186/1472-6750-10-62

Engineering of N. benthamiana L. plants for production of N-acetylgalactosamine-glycosylated proteins - towards development of a plant-based platform for production of protein therapeutics with mucin type O-glycosylation
Cited by: 44
Author(s): Sasha M. Daskalova, Josiah E. Radder, Zbigniew A. Cichacz, Sam H Olsen, George Tsaprailis, Hugh S. Mason, Linda C. Lopez
Software Mentions: 1
Published: almost 15 years ago

10.3390/ani11051338

Early Heat Exposure Effects on Proteomic Changes of the Broiler Liver under Acute Heat Stress
Cited by: 1
Author(s): Darae Kang, Kwan Seob Shim
Software Mentions: 1
Published: over 3 years ago

10.1186/s40478-019-0660-3

The APMAP interactome reveals new modulators of APP processing and beta-amyloid production that are altered in Alzheimer’s disease
Cited by: 20
Author(s): Hermeto Gerber, Sébastien Mosser, Benjamin Boury-Jamot, Michael Stumpe, Alessandra Piersigilli, Christine Goepfert, Jörn Dengjel, Urs Albrecht, Fulvio Magara, Patrick C. Fraering
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12936-015-0655-x

Effects of cyclin-dependent kinase inhibitor Purvalanol B application on protein expression and developmental progression in intra-erythrocytic Plasmodium falciparum parasites
Cited by: 5
Author(s): Kristen M. Bullard, Carolyn J. Broccardo, Susan M. Keenan
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1004987

Proteotoxic Stress Induces Phosphorylation of p62/SQSTM1 by ULK1 to Regulate Selective Autophagic Clearance of Protein Aggregates
Cited by: 237
Author(s): Junghyun Lim, M. Lenard Lachenmayer, Shuai Wu, Wenchao Li, Mondira Kundu, Rong Wang, Masaaki Komatsu, Young J. Oh, Yanxiang Zhao, Zhenyu Yue
Software Mentions: 1
Published: over 9 years ago

10.1186/1475-2875-10-318

Mitochondrial NAD+-dependent malic enzyme from Anopheles stephensi: a possible novel target for malaria mosquito control
Cited by: 8
Author(s): Jennifer Pon, Eleonora Napoli, Shirley Luckhart, Cecilia R Giulivi
Software Mentions: 1
Published: about 13 years ago

10.26508/lsa.202000742

<i>Leishmania</i>-infected macrophages release extracellular vesicles that can promote lesion development
Cited by: 23
Author(s): Anna Gioseffi, Timothy Hamerly, Kha Van, Naixin Zhang, Rhoel R. Dinglasan, Phillip A. Yates, Peter E. Kima
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pgen.1003960

CRIS—A Novel cAMP-Binding Protein Controlling Spermiogenesis and the Development of Flagellar Bending
Cited by: 43
Author(s): Anke Miriam Krähling, Luis J. Álvarez, Katharina Debowski, Qui Van, Monika Gunkel, Stephan Irsen, Ashraf Al‐Amoudi, Timo Strünker, Elisabeth Kremmer, Eberhard Krause, Ingo Voigt, Simone Wörtge, Ari Waisman, Ingo Weyand, Reinhard Seifert, U. Benjamin Kaupp, Dagmar Wachten
Software Mentions: 1
Published: almost 11 years ago

10.26508/lsa.201900547

The iron–sulfur helicase DDX11 promotes the generation of single-stranded DNA for CHK1 activation
Cited by: 15
Author(s): Anna Katharina Simon, Sandra Kummer, Sonja Wild, Aleksandra Lezaja, Federico Teloni, Stanisław K. Jóźwiakowski, Matthias Altmeyer, Kerstin Gari
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-016-3472-x

The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions
Cited by: 10
Author(s): Pamela Vazquez-Gutierrez, Marc J. A. Stevens, Peter Gehrig, Simon Barkow-Oesterreicher, Christophe Lacroix, Christophe Chassard
Software Mentions: 1
Published: almost 8 years ago

10.3390/life11010021

Arabidopsis Plant Natriuretic Peptide Is a Novel Interactor of Rubisco Activase
Cited by: 3
Author(s): Ilona Turek, Chris Gehring, Helen Ruth Irving
Software Mentions: 1
Published: almost 4 years ago

10.3390/life10120311

Erythromycin Treatment of Brassica campestris Seedlings Impacts the Photosynthetic and Protein Synthesis Pathways
Cited by: 3
Author(s): Young-Eun Yoon, Hyun Min Cho, Dong-Won Bae, Sung Joong Lee, Hyeonji Choe, Min Chul Kim, Mi Sun Cheong, Yong-Bok Lee
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2164-12-194

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes
Cited by: 14
Author(s): Niina Haiminen, F. Alex Feltus, Laxmi Parida
Software Mentions: 1
Published: over 13 years ago

10.1038/s41374-020-0403-x

Hemoglobin oxidation generates globin-derived peptides in atherosclerotic lesions and intraventricular hemorrhage of the brain, provoking endothelial dysfunction
Cited by: 30
Author(s): Niké Posta, Éva Csősz, Melinda Oros, Dávid Pethő, László Potor, Gergő Kalló, Zoltán Hendrik, Katalin Éva Sikura, Gábor Méhes, Csaba Tóth, József Posta, György Balla, József Balla
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1002786

FANCJ/BACH1 Acetylation at Lysine 1249 Regulates the DNA Damage Response
Cited by: 41
Author(s): Jenny Xie, Min Peng, Shawna Guillemette, Steven Quan, Stephanie Maniatis, Yuliang Wu, Aditya Venkatesh, Scott A. Shaffer, Robert M. Brosh, Sharon B. Cantor
Software Mentions: 1
Published: over 12 years ago

10.1155/2015/320120

Upper Gastrointestinal Bleeding from Gastric Amyloidosis in a Patient with Smoldering Multiple Myeloma
Cited by: 8
Author(s): Mihajlo Gjeorgjievski, Treta Purohit, Mitual Amin, Paul J. Kurtin, Mitchell S. Cappell
Software Mentions: 1
Published: almost 10 years ago

10.1186/1741-7007-10-5

Involvement of Plasmodium falciparum protein kinase CK2 in the chromatin assembly pathway
Cited by: 31
Author(s): Eeshita G Dastidar, Guillem Dayer, Zoe M Holland, Dominique Dorin‐Semblat, Aurélie Claës, Arnaud Chêne, Amit Sharma, Romain Hamelin, Marc Moniatte, José-Juan Lopez-Rubio, Artur Scherf, Christian Doerig
Software Mentions: 1
Published: almost 13 years ago

10.3390/ani11071942

Insect Protein-Based Diet as Potential Risk of Allergy in Dogs
Cited by: 16
Author(s): Blanka Premrov Bajuk, Petra Zrimšek, Tina Kotnik, Adrijana Leonardi, Igor Križaj, Breda Jakovac-Strajn
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pgen.1007487

Role of Bicaudal C1 in renal gluconeogenesis and its novel interaction with the CTLH complex
Cited by: 23
Author(s): Lucía C. Leal-Esteban, Benjamin Rothé, Simon Fortier, Manuela Isenschmid, Daniel Constam
Software Mentions: 1
Published: over 6 years ago

10.1002/cam4.1885

Exosome proteomic analyses identify inflammatory phenotype and novel biomarkers in African American prostate cancer patients
Cited by: 63
Author(s): Gatikrushna Panigrahi, Prakash Priyadarshi Praharaj, Hiroki Kittaka, Asit Ranjan Mridha, Olen M. Black, Ravi Singh, Roger S. Mercer, Adrie van Bokhoven, Kathleen C. Torkko, Chapla Agarwal, Rajesh Agarwal, Zakaria Y. Abd Elmageed, Hariom Yadav, Santosh K. Mishra, Gagan Deep
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pgen.1003977

Active Transport and Diffusion Barriers Restrict Joubert Syndrome-Associated ARL13B/ARL-13 to an Inv-like Ciliary Membrane Subdomain
Cited by: 90
Author(s): Sebiha Cevik, Anna A. W. M. Sanders, Erwin van Wijk, Karsten Boldt, Lara Clarke, Jeroen van Reeuwijk, Yuichi Hori, Nicola Horn, Lisette Hetterschijt, Anita Wdowicz, Andrea Mullins, Katarzyna Kaczyńska, Oktay I. Kaplan, Sylvia E. C. van Beersum, Kui Wu, Stef J.F. Letteboer, Dorus A. Mans, Toshiaki Katada, Kenji Kontani, Marius Ueffing, Ronald Roepman, Hannie Kremer, Oliver E. Blacque
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pgen.1008691

Mutation of CFAP57, a protein required for the asymmetric targeting of a subset of inner dynein arms in Chlamydomonas, causes primary ciliary dyskinesia
Cited by: 33
Author(s): Ximena M. Bustamante-Marin, Amjad Horani, Mihaela Stoyanova, Wu Lin Charng, Mathieu Bottier, Patrick R. Sears, Weining Yin, M. Leigh Anne Daniels, Hailey Bowen, Donald F. Conrad, Michael R. Knowles, Lawrence E. Ostrowski, Maimoona A. Zariwala, Susan K. Dutcher
Software Mentions: 1
Published: over 4 years ago

10.1002/cam4.2240

Dynamic urinary proteomic analysis in a Walker 256 intracerebral tumor model
Cited by: 14
Author(s): Linpei Zhang, Yuqiu Li, Wenqi Meng, Yanying Ni, Youhe Gao
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1007051

Condensin II and GAIT complexes cooperate to restrict LINE-1 retrotransposition in epithelial cells
Cited by: 17
Author(s): Jacqueline R. Ward, K.I. Vasu, Emily Deutschman, Dalia Halawani, Peter A. Larson, Dongmei Zhang, Belinda Willard, Paul L. Fox, John V. Moran, Michelle S. Longworth
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pgen.1007693

Non-proteolytic activity of 19S proteasome subunit RPT-6 regulates GATA transcription during response to infection
Cited by: 9
Author(s): Abiola Olumuyiwa Olaitan, Alejandro Aballay
Software Mentions: 1
Published: about 6 years ago