pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.12688/wellcomeopenres.16072.1

Global proteomic analysis of insulin receptor interactors in glomerular podocytes
Cited by: 1
Author(s): Salman Hosawi, Jonathan D. Humphries, Richard J M Coward, David Knight, Rachel Lennon
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0168913

Conserved Lysine Acetylation within the Microtubule-Binding Domain Regulates MAP2/Tau Family Members
Cited by: 16
Author(s): Andrew Hwang, Hanna Trzeciakiewicz, Dave Friedmann, Chao Yuan, Ronen Marmorstein, Virginia M.‐Y. Lee, Todd J. Cohen
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0186461

Software-aided approach to investigate peptide structure and metabolic susceptibility of amide bonds in peptide drugs based on high resolution mass spectrometry
Cited by: 14
Author(s): Tatiana Radchenko, Andreas Brink, Yves Siegrist, Christopher J. Kochansky, Alison Bateman, Fabien Fontaine, Luca Morettoni, Ismael Zamora
Software Mentions: 2
Published: almost 9 years ago

10.1007/s00401-020-02178-y

SFPQ and Tau: critical factors contributing to rapid progression of Alzheimer’s disease
Cited by: 41
Author(s): Neelam Younas, Saima Zafar, Mohsin Shafiq, Aneeqa Noor, Anna Siegert, Amandeep Singh Arora, А. П. Галкин, Ayesha Zafar, Mathias Schmitz, Christine Stadelmann, Olivier Andréoletti, Isidre Ferrer, Inga Zerr
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.01397

The Role of Mass Spectrometry in Structural Studies of Flavin-Based Electron Bifurcating Enzymes
Cited by: 8
Author(s): Monika Tokmina‐Lukaszewska, Angela Patterson, Luke Berry, Liam W. Scott, Narayanaganesh Balasubramanian, Brian Bothner
Software Mentions: 2
Published: over 8 years ago

10.3390/microorganisms9081593

Glucosidase Inhibitors Screening in Microalgae and Cyanobacteria Isolated from the Amazon and Proteomic Analysis of Inhibitor Producing Synechococcus sp. GFB01
Cited by: 6
Author(s): Diana Gomes Gradíssimo, Vivian Cássia Oliveira da Silva, Luciana Pereira Xavier, Sidney Vasconcelos do Nascimento, Rafael Borges da Silva Valadares, Sílvia Maria Mathes Faustino, Maria Paula Cruz Schneider, Agenor Valadares Santos
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.00598

Elucidating the Regulon of a Fur-like Protein in Mycobacterium avium subsp. paratuberculosis (MAP)
Cited by: 6
Author(s): Fernanda Miyagaki Shoyama, Taveesak Janetanakit, John P. Bannantine, Raúl G. Barletta, Srinand Sreevatsan
Software Mentions: 2
Published: over 6 years ago

10.1242/bio.037937

Physiological profile of undifferentiated bovine blastocyst-derived trophoblasts
Cited by: 13
Author(s): Viju Vijayan Pillai, L. G. B. Siqueira, Moubani Das, Tiffany G. Kei, Lan N. Tu, Anthony W. Herren, Brett S. Phinney, Soon Hon Cheong, Peter J. Hansen, Vimal Selvaraj
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2017.01772

Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling
Cited by: 21
Author(s): Sergio Triana, Hans de Cock, Robin A. Ohm, Giovanna Danies, Han A. B. Wösten, Silvia Restrepo, Andrés Fernando González Barrios, Adriana Celis
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0250296

Sodium butyrate modulates chicken macrophage proteins essential for Salmonella Enteritidis invasion
Cited by: 3
Author(s): Anamika Gupta, Mohit Bansal, Rohana Liyanage, Abhinav Upadhyay, N. C. Rath, Annie Donoghue, Xiaolun Sun
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0075446

A Purine Analog Synergizes with Chloroquine (CQ) by Targeting Plasmodium falciparum Hsp90 (PfHsp90)
Cited by: 23
Author(s): Dea Shahinas, Asongna Folefoc, Tony Taldone, Gabriela Chiosis, Ian Crandall, Dylan R. Pillai
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0028949

Proteome Changes Driven by Phosphorus Deficiency and Recovery in the Brown Tide-Forming Alga Aureococcus anophagefferens
Cited by: 60
Author(s): Louie L. Wurch, Erin M. Bertrand, Mak A. Saito, Benjamin A. S. Van Mooy, Sonya T. Dyhrman
Software Mentions: 2
Published: almost 15 years ago

10.3389/fmicb.2017.02586

Abundance of Secreted Proteins of Trichoderma reesei Is Regulated by Light of Different Intensities
Cited by: 25
Author(s): Eva Stappler, Jonathan D. Walton, Sabrina Beier, Monika Schmoll
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.dib.2014.09.006

Data set for the proteomic inventory and quantitative analysis of chicken uterine fluid during eggshell biomineralization
Cited by: 12
Author(s): Pauline Marie, Valérie Labas, Aurélien Brionne, Grégoire Harichaux, Christelle Hennequet-Antier, Yves Nys, Joël Gautron
Software Mentions: 2
Published: almost 12 years ago

10.7717/peerj.3350

Effects of arginine vasopressin on the urine proteome in rats
Cited by: 3
Author(s): Manxia An, Yanying Ni, Xundou Li, Youhe Gao
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2018.00755

The Membrane-Bound C Subunit of Reductive Dehalogenases: Topology Analysis and Reconstitution of the FMN-Binding Domain of PceC
Cited by: 19
Author(s): Géraldine Florence Buttet, Mathilde Stéphanie Willemin, Romain Hamelin, Aamani Rupakula, Julien Maillard
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.00384

Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”
Cited by: 14
Author(s): Samuel M. Luedin, Nicola Storelli, Francesco Danza, Samuele Roman, Matthias Wittwer, Joël F. Pothier, Mauro Tonolla
Software Mentions: 2
Published: over 7 years ago

10.3390/proteomes8030014

A Critical Review of Bottom-Up Proteomics: The Good, the Bad, and the Future of This Field
Cited by: 133
Author(s): Emmalyn J. Dupree, Madhuri Jayathirtha, Hannah Yorkey, Marius Mihăşan, Brîndușa Alina Petre, Costel C. Darie
Software Mentions: 2
Published: over 6 years ago

10.7717/peerj.7352

Comprehensive map and functional annotation of the mouse white adipose tissue proteome
Cited by: 7
Author(s): Xiaonan Tang, Juan Li, Weigang Zhao, Hui Sun, Jing Li, Zhu-Fang She, Tao Yuan, Shuainan Liu, Quan Liu, Yong Fu, Wei Sun
Software Mentions: 2
Published: about 7 years ago

10.7554/eLife.34803

Introgression of regulatory alleles and a missense coding mutation drive plumage pattern diversity in the rock pigeon
Cited by: 58
Author(s): Anna I. Vickrey, Rebecca Bruders, Zev Kronenberg, Emma J Mackey, Ryan J. Bohlender, Emily Maclary, Raquel Maynez, Edward J. Osborne, Kevin P. Johnson, Chad Huff, Mark Yandell, Michael D. Shapiro
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.11155

Polypyrimidine tract binding protein 1 protects mRNAs from recognition by the nonsense-mediated mRNA decay pathway
Cited by: 112
Author(s): Zhiyun Ge, Bao Lin Quek, Karen Beemon, J. Robert Hogg
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41398-020-00966-4

Integration of postmortem amygdala expression profiling, GWAS, and functional cell culture assays: neuroticism-associated synaptic vesicle glycoprotein 2A (SV2A) gene is regulated by miR-133a and miR-218
Cited by: 9
Author(s): Magdalena Jurkiewicz, Dirk Moser, Antonius Koller, Lei Yu, Emily I. Chen, David A. Bennett, Turhan Canli
Software Mentions: 2
Published: about 6 years ago

10.18632/oncotarget.16835

Upregulation of minichromosome maintenance complex component 3 during epithelial-to-mesenchymal transition in human prostate cancer
Cited by: 25
Author(s): Paul A. Stewart, Zahraa I. Khamis, Haiyen E. Zhau, Peng Duan, Quan‐Lin Li, Leland W.K. Chung, Qing‐Xiang Amy Sang
Software Mentions: 2
Published: over 9 years ago

10.3390/jcm10112446

Characteristics of the Urinary Proteome in Women with Overactive Bladder Syndrome: A Case-Control Study
Cited by: 1
Author(s): Marianne Koch, Pavel Lyatoshinsky, Goran Mitulović, Barbara Bodner‐Adler, Sören Lange, Engelbert Hanzal, Wolfgang Umek
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.32952

SIRT2 deacetylase regulates the activity of GSK3 isoforms independent of inhibitory phosphorylation
Cited by: 36
Author(s): Mohsen Sarikhani, Sneha Mishra, Sangeeta Maity, Chaithanya Kotyada, Donald J. Wolfgeher, Mahesh P. Gupta, Mahavir Singh, Nagalingam R. Sundaresan
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2020.01230

Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons
Cited by: 6
Author(s): Matthew Dommel, Jong‐Nam Oh, José C. Huguet‐Tapia, Endrick Guy, Hélène Boulain, Akiko Sugio, M. Murugan, Fabrice Legeai, Michelle Heck, Charlotte M. Smith, Frank F. White
Software Mentions: 2
Published: about 6 years ago

10.1038/hortres.2014.39

Dynamic changes in the date palm fruit proteome during development and ripening
Cited by: 35
Author(s): Claudius Marondedze, Chris Gehring, Ludivine Thomas
Software Mentions: 2
Published: about 12 years ago

10.7554/eLife.32866

Mfn2 ubiquitination by PINK1/parkin gates the p97-dependent release of ER from mitochondria to drive mitophagy
Cited by: 243
Author(s): Gian‐Luca McLelland, Thomas Goiran, Wei Yi, Geneviève Dorval, Carol X Chen, Nadine Lauinger, Andrea I Krahn, Sepideh Valimehr, Aleksandar Raković, Isabelle Rouiller, Thomas M. Durcan, Jean‐François Trempe, Edward A. Fon
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.RA119.007504

The priming factor CAPS1 regulates dense-core vesicle acidification by interacting with rabconnectin3β/WDR7 in neuroendocrine cells
Cited by: 7
Author(s): Ellen Crummy, Muralidharan Mani, John C. Thellman, Thomas F.J. Martin
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.25106

Proteomic screening identifies the zonula occludens protein ZO-1 as a new partner for ADAM12 in invadopodia-like structures
Cited by: 10
Author(s): Bassil Dekky, Michael W. Ruff, Dominique Bonnier, Vincent Legagneux, Nathalie Théret
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.49953

Kv2.1 mediates spatial and functional coupling of L-type calcium channels and ryanodine receptors in mammalian neurons
Cited by: 55
Author(s): Nicholas C. Vierra, Michael Kirmiz, Deborah van der List, Luis Fernando Santana, James S. Trimmer
Software Mentions: 2
Published: almost 7 years ago

10.1074/jbc.RA119.010486

Moonlighting matrix metalloproteinase substrates: Enhancement of proinflammatory functions of extracellular tyrosyl-tRNA synthetase upon cleavage
Cited by: 14
Author(s): Parker G. Jobin, Nestor Solis, Yoan Machado, Peter A. Bell, K. Simran, Nam Hoon Kwon, Sung Hoon Kim, Christopher M. Overall, Georgina S. Butler
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.RA119.012517

Phosphorylation of the overlooked tyrosine 310 regulates the structure, aggregation, and microtubule- and lipid-binding properties of Tau
Cited by: 27
Author(s): Nadine Ait-Bouziad, Anass Chiki, Galina Limorenko, Shifeng Xiao, David Eliezer, Hilal A. Lashuel
Software Mentions: 2
Published: over 6 years ago

10.1038/hortres.2016.29

Relative quantification of phosphoproteomic changes in grapevine (Vitis vinifera L.) leaves in response to abscisic acid
Cited by: 14
Author(s): Supakan Rattanakan, Iniga S. George, Paul A. Haynes, Grant R. Cramer
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.63538

Curcumin promotes AApoAII amyloidosis and peroxisome proliferation in mice by activating the PPARα signaling pathway
Cited by: 7
Author(s): Jian Dai, Ying Liu, Fuyuki Kametani, Xiaoran Cui, Yuichi Igarashi, Jia Huo, Hiroki Miyahara, Masayuki Mori, Kenichi Higuchi
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-66286-1

A new brilliantly blue-emitting luciferin-luciferase system from Orfelia fultoni and Keroplatinae (Diptera)
Cited by: 16
Author(s): Vadim R. Viviani, Jaqueline R. Silva, Danilo T. Amaral, Vanessa R. Bevilaqua, Fábio Camargo Abdalla, Bruce R. Branchini, Carl Hirschie Johnson
Software Mentions: 2
Published: over 6 years ago

10.3390/jpm10030083

Protein Expression Analysis of an In Vitro Murine Model of Prostate Cancer Progression: Towards Identification of High-Potential Therapeutic Targets
Cited by: 6
Author(s): Hisham F. Bahmad, Wenjing Peng, Rui Zhu, Farah Ballout, Alissar Monzer, Mohamad K. Elajami, Firas Kobeissy, Wassim Abou-Kheir, Yehia Mechref
Software Mentions: 2
Published: about 6 years ago

10.1128/mBio.02146-17

A Phosphorylation Switch on Lon Protease Regulates Bacterial Type III Secretion System in Host
Cited by: 23
Author(s): Xiaofeng Zhou, Doron Teper, Maxuel O. Andrade, Tong Zhang, Sixue Chen, Wenlei Song, Nian Wang
Software Mentions: 2
Published: over 8 years ago

10.4172/jpb.1000384

Proteome Dynamics of the Specialist Oxalate Degrader Oxalobacter formigenes
Cited by: 13
Author(s): Mellissa L Ellis, James A. Mobley, Ross P. Holmes, John Knight
Software Mentions: 2
Published: almost 11 years ago

10.7554/eLife.45916

In vivo identification of GTPase interactors by mitochondrial relocalization and proximity biotinylation
Cited by: 60
Author(s): Alison K. Gillingham, Jessie Bertram, Farida Begum, Sean Munro
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-68985-1

A benzimidazole inhibitor attenuates sterile inflammation induced in a model of systemic autoinflammation in female mice
Cited by: 4
Author(s): Federica Agliano, Keaton Karlinsey, Michael Ragazzi, Antoine Ménoret, Anthony T. Vella
Software Mentions: 2
Published: over 6 years ago

10.1098/rsob.170024

SUMOylation pathway alteration coupled with downregulation of SUMO E2 enzyme at mucosal epithelium modulates inflammation in inflammatory bowel disease
Cited by: 32
Author(s): Salman Ahmad Mustfa, Mukesh Kumar Singh, Aamir Suhail, Gayatree Mohapatra, Smriti Verma, Debangana Chakravorty, Sarika Rana, Ritika Rampal, Atika Dhar, Sudipto Saha, Vineet Ahuja, Chittur V. Srikanth
Software Mentions: 2
Published: over 9 years ago

10.1515/biol-2019-0070

RHOA and mDia1 promotes apoptosis of breast cancer cells via a high dose of doxorubicin treatment
Cited by: 12
Author(s): Peter Bober, Michal Alexovič, Zuzana Tomková, R Kilík, Ján Sabó
Software Mentions: 2
Published: almost 7 years ago

10.1128/mBio.01096-18

Migration of Type III Secretion System Transcriptional Regulators Links Gene Expression to Secretion
Cited by: 9
Author(s): Spyridoula N. Charova, Anastasia D. Gazi, Efstratios Mylonas, Charalambos Pozidis, Blanca Sabarit, D. Anagnostou, Konstantina Psatha, Michalis Aivaliotis, Carmen R. Beuzón, Nickolas J. Panopoulos, Michael Kokkinidis
Software Mentions: 2
Published: about 8 years ago

10.1186/s13023-019-1192-4

New insights on congenital pulmonary airways malformations revealed by proteomic analyses
Cited by: 9
Author(s): Constance Barazzone-Argiroffo, J. Lascano Maillard, Isabelle Vidal, Marie‐Luce Bochaton‐Piallat, Sanja Blaskovic, Yves Donati, Barbara E. Wildhaber, Anne‐Laure Rougemont, Christophe Delacourt, Isabelle Ruchonnet-Métrailler
Software Mentions: 2
Published: almost 7 years ago

10.3390/genes10090650

Affinity Purification of NF1 Protein–Protein Interactors Identifies Keratins and Neurofibromin Itself as Binding Partners
Cited by: 11
Author(s): Rachel M. Carnes, Robert A. Kesterson, Bruce R. Korf, James A. Mobley, Deeann Wallis
Software Mentions: 2
Published: about 7 years ago

10.1038/s41598-020-70010-4

The AAA + ATPase valosin-containing protein (VCP)/p97/Cdc48 interaction network in Leishmania
Cited by: 3
Author(s): Bruno Aguiar, Carole Dumas, Halim Maaroufi, Prasad K. Padmanabhan, Barbara Papadopoulou
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.31807

Site-specific glycosylation regulates the form and function of the intermediate filament cytoskeleton
Cited by: 54
Author(s): Heather J Tarbet, Lee Dolat, Timothy J. Smith, Brett M Condon, E. Timothy O’Brien, Raphael H. Valdivia, Michael Boyce
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.59288

Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolism
Cited by: 41
Author(s): Robert J. Nichols, Benjamin LaFrance, Naiya R Phillips, Devon Radford, Luke M. Oltrogge, Luis E. Valentin-Alvarado, Amanda J. Bischoff, Eva Nogales, David F. Savage
Software Mentions: 2
Published: over 5 years ago

10.1186/1479-5876-10-35

Hyperglycemic conditions inhibit C3-mediated immunologic control of Staphylococcus aureus
Cited by: 37
Author(s): Pamela S. Hair, Charlene G. Echague, Reuben D. Rohn, Neel K. Krishna, Julius O. Nyalwidhe, Kenji M. Cunnion
Software Mentions: 2
Published: over 14 years ago

10.1128/IAI.00537-19

Proximity Labeling To Map Host-Pathogen Interactions at the Membrane of a Bacterium-Containing Vacuole in Chlamydia trachomatis-Infected Human Cells
Cited by: 21
Author(s): Macy G. Olson, Ray E. Widner, Lisa M. Jorgenson, Alyssa Lawrence, Dragana Lagundžin, Nicholas T. Woods, Scot P. Ouellette, Elizabeth A. Rucks
Software Mentions: 2
Published: almost 7 years ago

10.7554/eLife.60126

Autoregulatory control of microtubule binding in doublecortin-like kinase 1
Cited by: 14
Author(s): Regina L. Agulto, Melissa M Rogers, Tracy Tan, Amrita Ramkumar, Ashlyn M Downing, Hannah Bodin, Julia Castro, Dan W. Nowakowski, Kassandra M. Ori-McKenney
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.58795

Parallel global profiling of plant TOR dynamics reveals a conserved role for LARP1 in translation
Cited by: 53
Author(s): M Regina Scarpin, Samuel Leiboff, Jacob O. Brunkard
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.09073

An ancient Pygo-dependent Wnt enhanceosome integrated by Chip/LDB-SSDP
Cited by: 45
Author(s): Marc Fiedler, Michael Graeb, Juliusz Mieszczanek, Trevor J. Rutherford, Christopher M. Johnson, Mariann Bienz
Software Mentions: 2
Published: about 11 years ago

10.1128/mBio.01137-19

Identification of Extracellular DNA-Binding Proteins in the Biofilm Matrix
Cited by: 89
Author(s): J.S. Kavanaugh, Caralyn E. Flack, Jessica Lister, Erica B. Ricker, Carolyn B. Ibberson, Christian Jenul, Derek E. Moormeier, Elizabeth Delmain, Kenneth W. Bayles, Alexander R. Horswill
Software Mentions: 2
Published: over 7 years ago

10.7554/eLife.62047

Atomic structures of respiratory complex III2, complex IV, and supercomplex III2-IV from vascular plants
Cited by: 447
Author(s): María Maldonado, Fei Guo, James A. Letts
Software Mentions: 2
Published: almost 6 years ago

10.3389/fpls.2017.01292

Stress-Related Mitogen-Activated Protein Kinases Stimulate the Accumulation of Small Molecules and Proteins in Arabidopsis thaliana Root Exudates
Cited by: 13
Author(s): Nadine Strehmel, Wolfgang Hoehenwarter, Susann Mönchgesang, Petra Majovsky, Sylvia Krüger, Dierk Scheel, Justin Lee
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.20882

Constitutive scaffolding of multiple Wnt enhanceosome components by Legless/BCL9
Cited by: 61
Author(s): Laurens M. van Tienen, Juliusz Mieszczanek, Marc Fiedler, Trevor J. Rutherford, Mariann Bienz
Software Mentions: 2
Published: over 9 years ago

10.1016/j.jbc.2021.100912

Cryo-EM reveals conformational flexibility in apo DNA polymerase ζ
Cited by: 4
Author(s): Chloe D. Truong, Theodore A. Craig, Gaofeng Cui, Maria Victoria Botuyan, Rachel A. Serkasevich, Kayi Y. Chan, Georges Mer, Po-Lin Chiu, Rajiv Kumar
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2018.00661

Genotype-Specific Growth and Proteomic Responses of Maize Toward Salt Stress
Cited by: 20
Author(s): Ana L C Soares, Christoph‐Martin Geilfus, Sébastien Carpentier
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.01299

A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 Å resolution
Cited by: 47
Author(s): Xing Zhang, Haixun Guo, Lei Jin, Elizabeth Czornyj, Asher Hodes, Wong H. Hui, Angela W Nieh, Jeff F. Miller, Z. Hong Zhou
Software Mentions: 2
Published: almost 13 years ago

10.7554/eLife.39140

Rif1 inhibits replication fork progression and controls DNA copy number in Drosophila
Cited by: 36
Author(s): Alexander Munden, Zhan Rong, Amanda Sun, Rama Gangula, Simon Mallal, Jared Nordman
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.32660

Intracellular antibody signalling is regulated by phosphorylation of the Fc receptor TRIM21
Cited by: 53
Author(s): Claire F. Dickson, Adam J. Fletcher, Marina Vaysburd, Ji‐Chun Yang, Donna L. Mallery, Jingwei Zeng, Christopher M. Johnson, Stephen H. McLaughlin, Mark Skehel, Sarah Maslen, James Cruickshank, Nicolas Huguenin‐Dezot, Jason W. Chin, David Neuhaus, Leo C. James
Software Mentions: 2
Published: over 8 years ago

10.3389/fnsyn.2017.00013

Activity-Dependent Phosphorylation by CaMKIIδ Alters the Ca2+ Affinity of the Multi-C2-Domain Protein Otoferlin
Cited by: 12
Author(s): Sandra Meese, A. Cepeda, Felix Gahlen, Christopher M. Adams, Ralf Ficner, Anthony J. Ricci, Stefan Heller, Ellen Reisinger, Meike Herget
Software Mentions: 2
Published: about 9 years ago

10.7554/eLife.04525

Mucosal effects of tenofovir 1% gel
Cited by: 40
Author(s): Florian Hladik, Adam Burgener, Lamar Ballweber, Raphaël Gottardo, Lucia Vojtech, Slim Fourati, Jiyan Dai, Mark J. Cameron, Johanna Strobl, Sean M. Hughes, Craig Hoesley, P. Andrew, Sherri Johnson, Jeanna Piper, David R. Friend, T. Blake Ball, Ross D. Cranston, Kenneth H. Mayer, M. Juliana McElrath, Ian McGowan
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-020-76052-y

Human perinatal stem cell derived extracellular matrix enables rapid maturation of hiPSC-CM structural and functional phenotypes
Cited by: 21
Author(s): Travis J. Block, Jeffery Creech, A.M. Rocha, Milos Marinkovic, Daniela Ponce-Balbuena, Eric N. Jiménez-Vázquez, Sy Griffey, Todd J. Herron
Software Mentions: 2
Published: almost 6 years ago

10.1128/mBio.00603-21

Toxoplasma gondii Matrix Antigen 1 Is a Secreted Immunomodulatory Effector
Cited by: 14
Author(s): Tadakimi Tomita, Debanjan Mukhopadhyay, Bing Han, Rama R. Yakubu, Vincent Tu, Joshua Mayoral, Tatsuki Sugi, Yanfen Ma, Jeroen P. J. Saeij, Louis M. Weiss
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2018.01882

Development of a Rapid in planta BioID System as a Probe for Plasma Membrane-Associated Immunity Proteins
Cited by: 37
Author(s): Brendon Conlan, Thomas Stoll, Jeffrey J. Gorman, Isabel M. L. Saur, John P. Rathjen
Software Mentions: 2
Published: almost 8 years ago

10.1128/mBio.01129-21

Gene Erosion Can Lead to Gain-of-Function Alleles That Contribute to Bacterial Fitness
Cited by: 4
Author(s): Julien Mortier, Elisa Gayán, Ronald Van Eyken, Oscar Enrique Torres Montaguth, Laleh Khodaparast, Laleh Khodaparast, Bert Houben, Sébastien Carpentier, Frédéric Rousseau, Joost Schymkowitz, Abram Aertsen
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-020-77346-x

Acute pathophysiological myocardial changes following intra-cardiac electrical shocks using a proteomic approach in a sheep model
Cited by: 4
Author(s): Alexandre Bodin, Valérie Labas, Arnaud Bisson, Ana-Paula Teixeira-Gomes, Hélène Blasco, Daniel Tomas, Lucie Combes‐Soia, Paulo Marcelo, Élodie Miquelestorena-Standley, Christophe Baron, Denis Angoulvant, Dominique Babuty, Nicolas Clémenty
Software Mentions: 2
Published: almost 6 years ago

10.1534/genetics.119.302851

Imipridone Anticancer Compounds Ectopically Activate the ClpP Protease and Represent a New Scaffold for Antibiotic Development
Cited by: 30
Author(s): Samuel Jacques, Almer M. van der Sloot, Caroline Huard, Jasmin Coulombe-Huntington, Sarah Tsao, Sylvain Tollis, Thierry Bertomeu, Elizabeth Culp, Daniel Pallant, Michael A. Cook, Éric Bonneil, Pierre Thibault, Gerard D. Wright, Mike Tyers
Software Mentions: 2
Published: over 6 years ago

10.1128/mSphere.00135-17

Heparin Mimics Extracellular DNA in Binding to Cell Surface-Localized Proteins and Promoting Staphylococcus aureus Biofilm Formation
Cited by: 31
Author(s): Sharad Mishra, Alexander R. Horswill
Software Mentions: 2
Published: over 9 years ago

10.1128/mSphere.00100-20

MAG2, a Toxoplasma gondii Bradyzoite Stage-Specific Cyst Matrix Protein
Cited by: 8
Author(s): Vincent Tu, Joshua Mayoral, Rama R. Yakubu, Tadakimi Tomita, Tatsuki Sugi, Bing Han, Tere Williams, Yanfen Ma, Louis M. Weiss
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms18071440

Semi-Quantitative Mass Spectrometry in AML Cells Identifies New Non-Genomic Targets of the EZH2 Methyltransferase
Cited by: 6
Author(s): Yordan Sbirkov, Colin Kwok, Amandeep Bhamra, Andrew J. Thompson, Veronica Gil, Arthur Zelent, Kevin Petrie
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-79545-y

Surface hydrophobics mediate functional dimerization of CYP121A1 of Mycobacterium tuberculosis
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Author(s): Amit Kumar, Christopher S. Campomizzi, Natalie Jay, Shaun Ferguson, Emelie‐Jo Scheffler, James Lioi, Chengjian Tu, Jun Qu, Claire Simons, D. Fernando Estrada
Software Mentions: 2
Published: almost 6 years ago

10.1534/g3.115.017053

The Mosaic Mutants of Cucumber: A Method to Produce Knock-Downs of Mitochondrial Transcripts
Cited by: 9
Author(s): Angel R. Del Valle-Echevarria, Agnieszka Kiełkowska, Grzegorz Bartoszewski, Michael J. Havey
Software Mentions: 2
Published: over 11 years ago

10.1128/mSystems.01095-20

Single-Cell RNA Sequencing Reveals that the Switching of the Transcriptional Profiles of Cysteine-Related Genes Alters the Virulence of Entamoeba histolytica
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Author(s): Min Feng, Yuhan Zhang, Hang Zhou, Xia Li, Yongfeng Fu, Hiroshi Tachibana, Xunjia Cheng
Software Mentions: 2
Published: almost 6 years ago

10.1128/mSystems.00397-21

The DNA Sensor IFIX Drives Proteome Alterations To Mobilize Nuclear and Cytoplasmic Antiviral Responses, with Its Acetylation Acting as a Localization Toggle
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Author(s): Timothy R. Howard, Marni S. Crow, Todd M. Greco, Krystal K. Lum, Tuo Li, Ileana M. Cristea
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83395-7

A Casz1–NuRD complex regulates temporal identity transitions in neural progenitors
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Author(s): Pierre Mattar, Christine Jolicoeur, Dang Thanh Chung, Sujay Shah, Brian S. Clark, Michel Cayouette
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms19102912

Porcine Breast Extracellular Matrix Hydrogel for Spatial Tissue Culture
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Author(s): Girdhari Rijal, Jing Wang, Ilhan Yu, David R. Gang, Roland Chen, Weimin Li
Software Mentions: 2
Published: about 8 years ago

10.1186/gb-2012-13-2-r11

Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells
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Author(s): Najeeb U. Siddiqui, Xiao Li, Hua Luo, Angelo Karaiskakis, Huayun Hou, Thomas Kislinger, J. Timothy Westwood, Quaid Morris, Howard D. Lipshitz
Software Mentions: 2
Published: almost 15 years ago

10.1038/s41598-021-86284-1

Ibuprofen alters epoxide hydrolase activity and epoxy-oxylipin metabolites associated with different metabolic pathways in murine livers
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Author(s): Shuchita Tiwari, Jun Yang, Christophe Morisseau, Blythe Durbin‐Johnson, Bruce D. Hammock, Aldrin V. Gomes
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-89907-9

Continual proteomic divergence of HepG2 cells as a consequence of long-term spheroid culture
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Author(s): Andrea Antonio Ellero, Iman van den Bout, Maré Vlok, Allan Duncan Cromarty, Tracey Hurrell
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms20236041

Dead Cas Systems: Types, Principles, and Applications
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Author(s): Sergey Brezgin, Anastasiya Kostyusheva, Dmitry Kostyushev, Vladimir Chulanov
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21020466

Identification of 56 Proteins Involved in Embryo–Maternal Interactions in the Bovine Oviduct
Cited by: 13
Author(s): Charles Banliat, Guillaume Tsikis, Valérie Labas, Ana-Paula Teixeira-Gomes, Emmanuelle Com, Régis Lavigne, Charles Pineau, Benoît Guyonnet, Pascal Mermillod, Marie Saint‐Dizier
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-021-91756-5

Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives
Cited by: 4
Author(s): Mana Iwata, Ana Gutiérrez, Gisela Marques, Grzegorz Sabat, Philip J. Kersten, Daniel Cullen, Jennifer M. Bhatnagar, J. S. Yadav, Anna Lipzen, Yuko Yoshinaga, Aarti Sharma, Catherine Adam, Christopher Daum, Vivian Ng, Igor V. Grigoriev, Chiaki Hori
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21051729

Tuberous Sclerosis Complex Axis Controls Renal Extracellular Vesicle Production and Protein Content
Cited by: 16
Author(s): Fahad Zadjali, Prashant Kumar, Ying Yao, Daniel L. Johnson, Aristotelis Astrinidis, Peter Vogel, Kenneth W. Gross, John J. Bissler
Software Mentions: 2
Published: over 6 years ago

10.3389/fvets.2020.584948

Protein Cargo of Extracellular Vesicles From Bovine Follicular Fluid and Analysis of Their Origin From Different Ovarian Cells
Cited by: 19
Author(s): Svetlana Uzbekova, Carmen Almiñana, Valérie Labas, Ana-Paula Teixeira-Gomes, Lucie Combes‐Soia, Guillaume Tsikis, Anaïs Vitorino Carvalho, Rustem Uzbekov, Г. Н. Сингина
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-021-92931-4

Overlapping regions of Caf20 mediate its interactions with the mRNA-5′cap-binding protein eIF4E and with ribosomes
Cited by: 4
Author(s): Ebelechukwu C. Nwokoye, Eiman AlNaseem, Robert A. Crawford, Lydia M. Castelli, Martin D. Jennings, Christopher J. Kershaw, Graham D. Pavitt
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21093155

Functional Analysis of Differentially Expressed Acetylated Spermatozoal Proteins in Infertile Men with Unilateral and Bilateral Varicocele
Cited by: 12
Author(s): Manesh Kumar Panner Selvam, Luna Samanta, Ashok Agarwal
Software Mentions: 2
Published: over 6 years ago

10.3390/jof6030148

Proteomic and Transcriptomic Analyses Indicate Metabolic Changes and Reduced Defense Responses in Mycorrhizal Roots of Oeceoclades maculata (Orchidaceae) Collected in Nature
Cited by: 12
Author(s): Rafael Borges da Silva Valadares, Silvia Perotto, Adriano Reis Lucheta, Eder C. Santos, Renato R. M. Oliveira, Márcio Rodrigues Lambais
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-021-95060-0

Proteomic study of Desulfovibrio ferrophilus IS5 reveals overexpressed extracellular multi-heme cytochrome associated with severe microbiologically influenced corrosion
Cited by: 9
Author(s): Mohor Chatterjee, Yu Fan, Fang Cao, A. A. Jones, Giovanni Pilloni, Xiaozhou Zhang
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21165683

Complex III Inhibition-Induced Pulmonary Hypertension Affects the Mitochondrial Proteomic Landscape
Cited by: 10
Author(s): Joel James, Mathews Valuparampil Varghese, Mikhail Vasilyev, Paul Langlais, Stevan P. Tofovic, Olga Rafikova, Ruslan Rafikov
Software Mentions: 2
Published: about 6 years ago

10.1007/s00535-021-01802-2

Alteration of protein expression and spliceosome pathway activity during Barrett’s carcinogenesis
Cited by: 1
Author(s): Christoph Stingl, Angela Bureo Gonzalez, Coşkun Güzel, Kai Yi N. Phoa, Michail Doukas, Gerben E. Breimer, Sybren L. Meijer, Jacques Bergman, Theo M. Luider
Software Mentions: 2
Published: over 5 years ago

10.1099/jgv.0.001607

Identification of protein interactions of grapevine fanleaf virus RNA-dependent RNA polymerase during infection of Nicotiana benthamiana by affinity purification and tandem mass spectrometry
Cited by: 2
Author(s): Larissa J. Osterbaan, Victoria Hoyle, Michelle Curtis, Stacy L. DeBlasio, Keith Rivera, Michelle Heck, Marc Fuchs
Software Mentions: 2
Published: over 5 years ago

10.1242/jcs.154880

Tyrosine phosphorylation of WIP releases bound WASP and impairs podosome assembly in macrophages
Cited by: 15
Author(s): Vineetha Vijayakumar, James Monypenny, Xing Judy Chen, Laura M. Machesky, Sérgio Lilla, Adrian J. Thrasher, Inés M. Antón, Yolanda Calle, Gareth E. Jones
Software Mentions: 2
Published: almost 13 years ago

10.3390/ijms21197278

Excess Protein O-GlcNAcylation Links Metabolic Derangements to Right Ventricular Dysfunction in Pulmonary Arterial Hypertension
Cited by: 16
Author(s): Sasha Z. Prisco, Lauren Rose, François Potus, Lian Tian, Danchen Wu, Lynn M. Hartweck, Ruaa Al-Qazazi, M. Neuber‐Hess, Megan Eklund, Steven Hsu, Thenappan Thenappan, Stephen L. Archer, Kurt W. Prins
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21218283

Insight into the Interactome of Intramitochondrial PKA Using Biotinylation-Proximity Labeling
Cited by: 5
Author(s): Yasmine Ould Amer, Étienne Hébert-Chatelain
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13059-016-0951-y

OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees
Cited by: 65
Author(s): Song Gao, Denis Bertrand, Burton K. Chia, Niranjan Nagarajan
Software Mentions: 2
Published: over 10 years ago

10.1155/2013/581862

iTRAQ-Based and Label-Free Proteomics Approaches for Studies of Human Adenovirus Infections
Cited by: 62
Author(s): Hung V. Trinh, Jonas Grossmann, Peter Gehrig, Bernd Roschitzki, Ralph Schlapbach, Urs F. Greber, Silvio Hemmi
Software Mentions: 2
Published: over 13 years ago

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