pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.7717/peerj.7352

Comprehensive map and functional annotation of the mouse white adipose tissue proteome
Cited by: 7
Author(s): Xiaonan Tang, Juan Li, Weigang Zhao, Hui Sun, Jing Li, Zhu-Fang She, Tao Yuan, Shuainan Liu, Quan Liu, Yong Fu, Wei Sun
Software Mentions: 2
Published: about 7 years ago

10.3389/fonc.2020.01784

Effects of the Oncoprotein PAX3-FOXO1 on Modulation of Exosomes Function and Protein Content: Implications on Oxidative Stress Protection and Enhanced Plasticity
Cited by: 3
Author(s): Assil Fahs, Farah Ramadan, Farah Ghamloush, Abeer J. Ayoub, Ahmad Faraz, Firas Kobeissy, Yehia Mechref, Jingkun Zhao, Rui Zhu, Nader Hussein, Raya Saab, Sandra E. Ghayad
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0100263

Insight into PreImplantation Factor (PIF*) Mechanism for Embryo Protection and Development: Target Oxidative Stress and Protein Misfolding (PDI and HSP) through Essential RIPK Binding Site
Cited by: 30
Author(s): Eytan R. Barnea, David M. Lubman, Yan Hui Liu, V. Absalon-Medina, Soren Hayrabedyan, Krassimira Todorova, R.O. Gilbert, Joy Guingab, Timothy J. Barder
Software Mentions: 2
Published: over 12 years ago

10.1074/mcp.RA118.000973

Development of a Gill Assay Library for Ecological Proteomics of Threespine Sticklebacks (Gasterosteus aculeatus)
Cited by: 22
Author(s): Johnathon Li, Bryn Levitan, Silvia Gómez‐Jiménez, Dietmar Kültz
Software Mentions: 2
Published: almost 8 years ago

10.3389/fphys.2015.00039

Dissection of the radical reactions linked to fetal hemoglobin reveals enhanced pseudoperoxidase activity
Cited by: 31
Author(s): Khuanpiroon Ratanasopa, Michael Brad Strader, Abdu I. Alayash, Leif Bülow
Software Mentions: 2
Published: over 11 years ago

10.7717/peerj.506

Human hair shaft proteomic profiling: individual differences, site specificity and cuticle analysis
Cited by: 48
Author(s): Chelsea Nicole Laatsch, Blythe Durbin‐Johnson, David M. Rocke, Sophie Mukwana, Abby B. Newland, Michael J. Flagler, Michael Davis, Richard A. Eigenheer, Brett S. Phinney, Robert H. Rice
Software Mentions: 2
Published: about 12 years ago

10.3389/fphys.2017.00793

Integrative Temporo-Spatial, Mineralogic, Spectroscopic, and Proteomic Analysis of Postnatal Enamel Development in Teeth with Limited Growth
Cited by: 8
Author(s): Mirali Pandya, Hui Liu, Smit Dangaria, Weiying Zhu, Leo L. Li, Shuang Pan, Moufida Abufarwa, Roderick G. Davis, Stephen Guggenheim, Timothy A. Keiderling, Xianghong Luan, Thomas G.H. Diekwisch
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0018724

Temperature-Induced Protein Secretion by Leishmania mexicana Modulates Macrophage Signalling and Function
Cited by: 84
Author(s): Kasra Hassani, Elisabeth Antoniak, Armando Jardim, Martin Olivier
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0185125

Biochemical and biomechanical properties of the pacemaking sinoatrial node extracellular matrix are distinct from contractile left ventricular matrix
Cited by: 19
Author(s): Jessica M. Gluck, Anthony W. Herren, Sergey Yechikov, Hillary K.J. Kao, Ambereen Khan, Brett S. Phinney, Nipavan Chiamvimonvat, James W. Chan, Deborah K. Lieu
Software Mentions: 2
Published: about 9 years ago

10.1074/mcp.M115.054064

Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry
Cited by: 148
Author(s): He Huang, Sophie Alvarez, Rebecca K. Bindbeutel, Zhouxin Shen, Michael J. Naldrett, Bradley S. Evans, Steven P. Briggs, Leslie M. Hicks, Steve A. Kay, Dmitri A. Nusinow
Software Mentions: 2
Published: almost 11 years ago

10.14814/phy2.12988

Reduced mitochondrial mass and function add to age-related susceptibility toward diet-induced fatty liver in C57BL/6J mice
Cited by: 27
Author(s): Kerstin Lohr, Fiona Pachl, Amin Moghaddas Gholami, Kerstin E. Geillinger, Hannelore Daniel, Bernhard Küster, Martin Klingenspor
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0004501

Two Chromogranin A-Derived Peptides Induce Calcium Entry in Human Neutrophils by Calmodulin-Regulated Calcium Independent Phospholipase A2
Cited by: 87
Author(s): Dandan Zhang, Peiman Shooshtarizadeh, Benoît‐Joseph Laventie, Didier Colin, Jean-François Chich, Jasmina Vidić, Jean de Barry, Sylvette Chasserot‐Golaz, François Delalande, Alain Van Dorsselaer, Francis Schneider, Karen B. Helle, Dominique Aunis, Gilles Prévost, Marie‐Hélène Metz‐Boutigue
Software Mentions: 2
Published: over 17 years ago

10.1016/j.molcel.2012.05.004

A Death Effector Domain Chain DISC Model Reveals a Crucial Role for Caspase-8 Chain Assembly in Mediating Apoptotic Cell Death
Cited by: 267
Author(s): Laura S. Dickens, Robert S. Boyd, Rebekah Jukes-Jones, Michelle A. Hughes, Gemma L. Robinson, Louise Fairall, John W. R. Schwabe, Kelvin Cain, Marion MacFarlane
Software Mentions: 2
Published: over 14 years ago

10.3390/antiox8120605

The Disulfide Stress Response and Protein S-thioallylation Caused by Allicin and Diallyl Polysulfanes in Bacillus subtilis as Revealed by Transcriptomics and Proteomics
Cited by: 21
Author(s): Bui Khanh, Nguyen Thi Thu Huyen, Vu Van Loi, Martin C. H. Gruhlke, Marc Schaffer, Ulrike Mäder, Sandra Maaß, Dörte Becher, Jörg Bernhardt, Miriam Arbach, Chris J. Hamilton, Alan Slusarenko, Haike Antelmann
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.ppat.1006001

The Listeria monocytogenes PASTA Kinase PrkA and Its Substrate YvcK Are Required for Cell Wall Homeostasis, Metabolism, and Virulence
Cited by: 61
Author(s): Daniel A. Pensinger, Kyle Boldon, Grischa Y. Chen, William J.B. Vincent, Sherman Kyle, Min Xiong, Adam J. Schaenzer, Emily R. Forster, Jörn Coers, Rob Striker, John-Demian Sauer
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0208352

Characterization of longitudinal canal tissue in the acorn barnacle Amphibalanus amphitrite
Cited by: 8
Author(s): Chenyue Wang, Janna N. Schultzhaus, Chris R. Taitt, Dagmar H. Leary, Lisa C. Shriver‐Lake, Daniel A. Snellings, Samantha L Sturiale, Stella H. North, Beatriz Orihuela, Daniel Rittschof, Kathryn J. Wahl, Christopher M. Spillmann
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0040695

Integrated Metabolo-Proteomic Approach to Decipher the Mechanisms by Which Wheat QTL (Fhb1) Contributes to Resistance against Fusarium graminearum
Cited by: 212
Author(s): Raghavendra Gunnaiah, Ajjamada C. Kushalappa, Raj Duggavathi, S. L. Fox, Daryl J. Somers
Software Mentions: 2
Published: about 14 years ago

10.1186/1471-2164-9-595

Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species
Cited by: 53
Author(s): Hernán Lorenzi, Mathangi Thiagarajan, Brian J. Haas, Jennifer Wortman, Neil Hall, Elisabet Caler
Software Mentions: 2
Published: almost 18 years ago

10.1093/pcp/pcaa170

A Novel Signaling Pathway Required for Arabidopsis Endodermal Root Organization Shapes the Rhizosphere Microbiome
Cited by: 11
Author(s): Julius Dürr, Guilhem Reyt, Stijn Spaepen, Sally Hilton, Cathal Meehan, Qi Wu, Takehiro Kamiya, Paulina Flis, H. G. Dickinson, Attila Fehér, Shivshankar Umashankar, Shruti Pavagadhi, Sanjay Swarup, David E. Salt, Gary D. Bending, José Gutierrez-Marcos
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0018497

A Mighty Small Heart: The Cardiac Proteome of Adult Drosophila melanogaster
Cited by: 81
Author(s): Anthony Cammarato, Christian H. Ahrens, Nakissa N. Alayari, Ermir Qeli, Jasma Rucker, Mary C. Reedy, Christian M. Zmasek, Marjan Guček, Robert N. Cole, Jennifer E. Van Eyk, Rolf Bodmer, Brian O’Rourke, Sanford I. Bernstein, D. Brian Foster
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0228134

Proteomic profiling of proteins in the dorsal horn of the spinal cord in dairy cows with chronic lameness
Cited by: 2
Author(s): Daniel Herzberg, Pablo Strobel, Heine Yacob Müller, Constanza Meneses, Mads Werner, Hedie Bustamante
Software Mentions: 2
Published: over 6 years ago

10.1111/tpj.13743

Multiple marker abundance profiling: combining selected reaction monitoring and data‐dependent acquisition for rapid estimation of organelle abundance in subcellular samples
Cited by: 13
Author(s): Cornelia M. Hooper, Tim J. Stevens, Anna Maija Saukkonen, Ian Castleden, Pragya Singh, Gregory W. Mann, Bertrand Fabre, Jun Ito, Michael J. Deery, Kathryn S. Lilley, Young-Mo Kim, A. Harvey Millar, Joshua L. Heazlewood, Harriet T. Parsons
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.ppat.1009506

The antiviral sirtuin 3 bridges protein acetylation to mitochondrial integrity and metabolism during human cytomegalovirus infection
Cited by: 16
Author(s): Xuanyu Sheng, Ileana M. Cristea
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0156543

A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site
Cited by: 11
Author(s): Erin Becker, Andrew I. Yao, Phillip Seitzer, Tobias Kind, Ting Wang, Rich Eigenheer, Katie S. Y. Shao, Vladimir Yarov‐Yarovoy, Marc T. Facciotti
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0015004

Aptamer-Based Multiplexed Proteomic Technology for Biomarker Discovery
Cited by: 1,153
Author(s): Larry Gold, Deborah Ayers, Jennifer Bertino, C. Bock, Ashley Bock, Edward N. Brody, Jeff Carter, Andrew B. Dalby, Bruce E. Eaton, Tim Fitzwater, Dylan Flather, Ashley Forbes, Trudi Foreman, Cate Fowler, Bharat Gawande, Meredith Goss, Magda Gunn, Shashi Gupta, Dennis Halladay, Jim Heil, Joe Heilig, Brian J. Hicke, Gregory M. Husar, Nebojša Janjić, Thale C. Jarvis, Susan D. Jennings, Evaldas Katilius, Tracy R. Keeney, Nancy Kim, Tad H. Koch, Stephan Kräemer, Luke Kroiss, Ngan Le, Daniel M. Levine, Wes Lindsey, Bridget Lollo, Wes Mayfield, Mike Mehan, Robert Mehler, Sally K. Nelson, Michele Nelson, Dan Nieuwlandt, Malti Nikrad, Urs A. Ochsner, Rachel Ostroff, Matt Otis, Thomas S. Parker, Steve Pietrasiewicz, Daniel I. Resnicow, John C. Rohloff, Glenn M. Sanders, Sarah Sattin, Daniel J. Schneider, Britta Swebilius Singer, Martin Stanton, Alana Sterkel, A. Keith Stewart, Suzanne Stratford, Jonathan D. Vaught, Mike Vrkljan, Jeffrey J. Walker, Mike Watrobka, Sheela Waugh, Allison Weiss, Sheri K. Wilcox, Alexey D. Wolfson, Steven K. Wolk, Chi Zhang, Dom Zichi
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0026542

A Metaproteomic Approach to Study Human-Microbial Ecosystems at the Mucosal Luminal Interface
Cited by: 73
Author(s): Xiaoxiao Li, James F. LeBlanc, Amy Truong, Ravi Vuthoori, Sharon S. Chen, Jonathan L. Lustgarten, Bennett E. Roth, Jeff Allard, Andrew Ippoliti, Laura L. Presley, James Borneman, William L. Bigbee, Vanathi Gopalakrishnan, Thomas G. Graeber, David Elashoff, Jonathan Braun, Lee Goodglick
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0190836

Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds
Cited by: 7
Author(s): Clifford G. Clark, Chih-Yu Chen, Chrystal Berry, Matthew Walker, Stuart McCorrister, Patrick Chong, Garrett Westmacott
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pbio.3001081

Molecular characterization of the conoid complex in Toxoplasma reveals its conservation in all apicomplexans, including Plasmodium species
Cited by: 49
Author(s): Luděk Kořený, Mohammad Zeeshan, Konstantin Barylyuk, Eelco C. Tromer, Jolien J. E. van Hooff, Declan Brady, Huiling Ke, Sara Chelaghma, David J. P. Ferguson, Laura Eme, Rita Tewari, Ross F. Waller
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pbio.3000373

N-terminal β-strand underpins biochemical specialization of an ATG8 isoform
Cited by: 43
Author(s): Erin K. Zess, Cassandra Jensen, Neftaly Cruz-Mireles, Juan Carlos De la Concepcion, Jan Sklenář, Madlen Stephani, Richard Imre, Elisabeth Roitinger, Richard K. Hughes, Khaoula Belhaj, Karl Mechtler, Frank L.H. Menke, Tolga O. Bozkurt, Mark J. Banfield, Sophien Kamoun, Abbas Maqbool, Yasin Dagdas
Software Mentions: 2
Published: about 7 years ago

10.1016/j.xpro.2021.100417

Identifying cytokine signaling signatures in primary human Th-1 cells by phospho-proteomics analysis
Cited by: 0
Author(s): Jonathan Martínez-Fábregas, Elizabeth Pöhler, Ignacio Moraga
Software Mentions: 2
Published: over 5 years ago

10.1126/sciadv.aba8397

The structures of natively assembled clathrin-coated vesicles
Cited by: 38
Author(s): Mohammadreza Paraan, Joshua H. Mendez, Savanna R. Sharum, Danielle L. Kurtin, Huan He, Scott M. Stagg
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0037034

Comparative Proteomic Analysis of Aedes aegypti Larval Midgut after Intoxication with Cry11Aa Toxin from Bacillus thuringiensis
Cited by: 48
Author(s): Angeles Cancino-Rodezno, Luis Lozano, Cris Oppert, Julieta Ivonne Castro, Humberto Lánz-Mendoza, Sergio Encarnación, Amy Evans, Sarjeet S. Gill, Mário Soberón, Juan Luís Jurat-Fuentes, Alejandra Bravo
Software Mentions: 2
Published: over 14 years ago

10.1038/srep29417

Identification of cyclins A1, E1 and vimentin as downstream targets of heme oxygenase-1 in vascular endothelial growth factor-mediated angiogenesis
Cited by: 16
Author(s): Andrea S. Bauer, Hayley Mylroie, Clare Thornton, Damien Calay, Graeme M. Birdsey, Allan Kiprianos, Garrick K. Wilson, Miguel P. Soares, Xiaoke Yin, Manuel Mayr, Anna M. Randi, Justin C. Mason
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0124473

Comprehensive Evaluation of Toxoplasma gondii VEG and Neospora caninum LIV Genomes with Tachyzoite Stage Transcriptome and Proteome Defines Novel Transcript Features
Cited by: 29
Author(s): Abhinay Ramaprasad, Tobias Mourier, Raeece Naeem, Tareq B. Malas, Ehab M. Moussa, Aswini K. Panigrahi, Sarah J. Vermont, Thomas D. Otto, Jonathan M. Wastling, Arnab Pain
Software Mentions: 2
Published: over 11 years ago

10.1186/s40478-019-0796-1

Composition of the Intranuclear Inclusions of Fragile X-associated Tremor/Ataxia Syndrome
Cited by: 45
Author(s): Lisa Ma, Anthony W. Herren, Glenda Espinal, Jamie L. Randol, Bridget McLaughlin, Verónica Martínez‐Cerdeño, Isaac N. Pessah, Randi J. Hagerman, Paul J. Hagerman
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0027811

Radiation–Induced Signaling Results in Mitochondrial Impairment in Mouse Heart at 4 Weeks after Exposure to X-Rays
Cited by: 130
Author(s): Žarko Barjaktarović, Dominik Schmaltz, Alena Shyla, Omid Azimzadeh, Sabine Schulz, Julia Haagen, Wolfgang Dörr, Hakan Sarioglu, Alexander Schäfer, Michael J. Atkinson, Hans Zischka, Soile Tapio
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pbio.3001136

Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network
Cited by: 56
Author(s): Lida Derevnina, Mauricio P Contreras, Hiroaki Adachi, Jessica Upson, Angel Vergara Cruces, Rongrong Xie, Jan Sklenář, Frank L.H. Menke, Sam T. Mugford, Dan MacLean, Wenbo Ma, Saskia A. Hogenhout, A. Goverse, Abbas Maqbool, Chih‐Hang Wu, Sophien Kamoun
Software Mentions: 2
Published: about 5 years ago

10.1038/srep36699

Insights into a novel nuclear function for Fascin in the regulation of the amino-acid transporter SLC3A2
Cited by: 21
Author(s): Amine Saad, Krikor Bijian, Dinghong Qiu, Sabrina Daniela da Silva, Maud Marques, Chia-Hao Chang, Hassan Nassour, Dindial Ramotar, Sambasivarao Damaraju, John R. Mackey, Tarek A. Bismar, Michael Witcher, Moulay A. Alaoui‐Jamali
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep37643

Nucleoside-Diphosphate-Kinase of P. gingivalis is Secreted from Epithelial Cells In the Absence of a Leader Sequence Through a Pannexin-1 Interactome
Cited by: 25
Author(s): Kalina R. Atanasova, Jungnam Lee, JoAnn S. Roberts, Kyulim Lee, David M. Ojcius, Özlem Yılmaz
Software Mentions: 2
Published: almost 10 years ago

10.1186/1476-4598-12-62

Biochemical and biological characterization of exosomes containing prominin-1/CD133
Cited by: 90
Author(s): Germana Rappa, Javier Mercapide, Fabio Anzanello, R. Marshall Pope, Aurelio Lorico
Software Mentions: 2
Published: over 13 years ago

10.1186/1756-6606-4-28

Impairment of adult hippocampal neural progenitor proliferation by methamphetamine: role for nitrotyrosination
Cited by: 49
Author(s): Arun Venkatesan, Lerna Uzasci, Zhaohui Chen, Labchan Rajbhandari, Carol Anderson, Myoung Hwa Lee, M.A. Bianchet, Robert J. Cotter, Hongjun Song, Avindra Nath
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0064621

Transcriptome and Proteome Data Reveal Candidate Genes for Pollinator Attraction in Sexually Deceptive Orchids
Cited by: 44
Author(s): Khalid E. M. Sedeek, Weihong Qi, Monica A. Schauer, Alok Gupta, Lucy Poveda, Shuqing Xu, Zhong‐Jian Liu, Ueli Grossniklaus, Florian P. Schiestl, Philipp M. Schlüter
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0012671

Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae
Cited by: 150
Author(s): Nikoleta G. Tsvetanova, Daniel M. Klass, Julia Salzman, Patrick O. Brown
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0080737

PRICKLE1 Interaction with SYNAPSIN I Reveals a Role in Autism Spectrum Disorders
Cited by: 37
Author(s): Lily Paemka, Vinit B. Mahajan, Jessica M. Skeie, Levi P. Sowers, Salleh N. Ehaideb, Pedro González-Alegre, Toshikuni Sasaoka, Hirotaka Tao, Asuka Miyagi, Naoto Ueno, Keizo Takao, Tsuyoshi Miyakawa, Shu Wu, Benjamin W. Darbro, Polly J. Ferguson, Andrew A. Pieper, Jeremiah K. Britt, John A. Wemmie, Danielle S. Rudd, Thomas H. Wassink, Hatem El‐Shanti, Heather C Mefford, Gemma L. Carvill, J. Robert Manak, Alexander G. Bassuk
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0094166

Biochemical Properties and Atomic Resolution Structure of a Proteolytically Processed β-Mannanase from Cellulolytic Streptomyces sp. SirexAA-E
Cited by: 16
Author(s): Taichi E. Takasuka, Justin Acheson, C.M. Bianchetti, Ben M. Prom, Lai F. Bergeman, Adam J. Book, Cameron R. Currie, Brian G. Fox
Software Mentions: 2
Published: over 12 years ago

10.1186/s12862-021-01910-w

Odorant-binding proteins in canine anal sac glands indicate an evolutionarily conserved role in mammalian chemical communication
Cited by: 5
Author(s): Sunita Janssenswillen, Kim Roelants, Sébastien Carpentier, H. de Rooster, Mieke Metzemaekers, Bram Vanschoenwinkel, Paul Proost, Franky Bossuyt
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pbio.3000566

Cilia-based peptidergic signaling
Cited by: 45
Author(s): Raj Luxmi, Dhivya Kumar, Richard E. Mains, Stephen M. King, Betty A. Eipper
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0168913

Conserved Lysine Acetylation within the Microtubule-Binding Domain Regulates MAP2/Tau Family Members
Cited by: 16
Author(s): Andrew Hwang, Hanna Trzeciakiewicz, Dave Friedmann, Chao Yuan, Ronen Marmorstein, Virginia M.‐Y. Lee, Todd J. Cohen
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0186461

Software-aided approach to investigate peptide structure and metabolic susceptibility of amide bonds in peptide drugs based on high resolution mass spectrometry
Cited by: 14
Author(s): Tatiana Radchenko, Andreas Brink, Yves Siegrist, Christopher J. Kochansky, Alison Bateman, Fabien Fontaine, Luca Morettoni, Ismael Zamora
Software Mentions: 2
Published: almost 9 years ago

10.1007/s00401-020-02178-y

SFPQ and Tau: critical factors contributing to rapid progression of Alzheimer’s disease
Cited by: 41
Author(s): Neelam Younas, Saima Zafar, Mohsin Shafiq, Aneeqa Noor, Anna Siegert, Amandeep Singh Arora, А. П. Галкин, Ayesha Zafar, Mathias Schmitz, Christine Stadelmann, Olivier Andréoletti, Isidre Ferrer, Inga Zerr
Software Mentions: 2
Published: over 6 years ago

10.3390/microorganisms9081593

Glucosidase Inhibitors Screening in Microalgae and Cyanobacteria Isolated from the Amazon and Proteomic Analysis of Inhibitor Producing Synechococcus sp. GFB01
Cited by: 6
Author(s): Diana Gomes Gradíssimo, Vivian Cássia Oliveira da Silva, Luciana Pereira Xavier, Sidney Vasconcelos do Nascimento, Rafael Borges da Silva Valadares, Sílvia Maria Mathes Faustino, Maria Paula Cruz Schneider, Agenor Valadares Santos
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-15-S12-S2

Time-course human urine proteomics in space-flight simulation experiments
Cited by: 22
Author(s): Hans Binder, Henry Wirth, Arsen Arakelyan, Kathrin Lembcke, Evgeny S. Tiys, В. А. Иванисенко, Н. А. Колчанов, Alexey Kononikhin, Igor Popov, E. N. Nikolaev, Л. Х. Пастушкова, И. М. Ларина
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-019-38492-z

Animal species identification in parchments by light
Cited by: 8
Author(s): Ángel Martín Fernández Alvarez, Julie Bouhy, Marc Dieu, Cathérine Charles, Olivier Deparis
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-53268-1

Elemental Zn and its Binding Protein Zinc-α2-Glycoprotein are Elevated in HPV-Positive Oropharyngeal Squamous Cell Carcinoma
Cited by: 8
Author(s): Kate Poropatich, Tatjana Paunesku, Alia Zander, Brian Wray, Matthew J. Schipma, Prarthana Dalal, Mark Agulnik, Si Chen, Barry Lai, Olga Antipova, Evan Maxey, Koshonna Brown, Michael Beau Wanzer, Demirkan Gursel, Hanli Fan, Alfred Rademaker, Gayle E. Woloschak, Bharat B. Mittal
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0250296

Sodium butyrate modulates chicken macrophage proteins essential for Salmonella Enteritidis invasion
Cited by: 3
Author(s): Anamika Gupta, Mohit Bansal, Rohana Liyanage, Abhinav Upadhyay, N. C. Rath, Annie Donoghue, Xiaolun Sun
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0075446

A Purine Analog Synergizes with Chloroquine (CQ) by Targeting Plasmodium falciparum Hsp90 (PfHsp90)
Cited by: 23
Author(s): Dea Shahinas, Asongna Folefoc, Tony Taldone, Gabriela Chiosis, Ian Crandall, Dylan R. Pillai
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0028949

Proteome Changes Driven by Phosphorus Deficiency and Recovery in the Brown Tide-Forming Alga Aureococcus anophagefferens
Cited by: 60
Author(s): Louie L. Wurch, Erin M. Bertrand, Mak A. Saito, Benjamin A. S. Van Mooy, Sonya T. Dyhrman
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pgen.1005018

The Ribosome Biogenesis Factor Nol11 Is Required for Optimal rDNA Transcription and Craniofacial Development in Xenopus
Cited by: 36
Author(s): John N. Griffin, Samuel B. Sondalle, Florencia Del Viso, Susan J. Baserga, Mustafa K. Khokha
Software Mentions: 2
Published: over 11 years ago

10.1016/j.dib.2014.09.006

Data set for the proteomic inventory and quantitative analysis of chicken uterine fluid during eggshell biomineralization
Cited by: 12
Author(s): Pauline Marie, Valérie Labas, Aurélien Brionne, Grégoire Harichaux, Christelle Hennequet-Antier, Yves Nys, Joël Gautron
Software Mentions: 2
Published: almost 12 years ago

10.3390/proteomes8030014

A Critical Review of Bottom-Up Proteomics: The Good, the Bad, and the Future of This Field
Cited by: 133
Author(s): Emmalyn J. Dupree, Madhuri Jayathirtha, Hannah Yorkey, Marius Mihăşan, Brîndușa Alina Petre, Costel C. Darie
Software Mentions: 2
Published: over 6 years ago

10.3390/ijms21093155

Functional Analysis of Differentially Expressed Acetylated Spermatozoal Proteins in Infertile Men with Unilateral and Bilateral Varicocele
Cited by: 12
Author(s): Manesh Kumar Panner Selvam, Luna Samanta, Ashok Agarwal
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.32866

Mfn2 ubiquitination by PINK1/parkin gates the p97-dependent release of ER from mitochondria to drive mitophagy
Cited by: 243
Author(s): Gian‐Luca McLelland, Thomas Goiran, Wei Yi, Geneviève Dorval, Carol X Chen, Nadine Lauinger, Andrea I Krahn, Sepideh Valimehr, Aleksandar Raković, Isabelle Rouiller, Thomas M. Durcan, Jean‐François Trempe, Edward A. Fon
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms21165683

Complex III Inhibition-Induced Pulmonary Hypertension Affects the Mitochondrial Proteomic Landscape
Cited by: 10
Author(s): Joel James, Mathews Valuparampil Varghese, Mikhail Vasilyev, Paul Langlais, Stevan P. Tofovic, Olga Rafikova, Ruslan Rafikov
Software Mentions: 2
Published: about 6 years ago

10.1534/g3.115.017053

The Mosaic Mutants of Cucumber: A Method to Produce Knock-Downs of Mitochondrial Transcripts
Cited by: 9
Author(s): Angel R. Del Valle-Echevarria, Agnieszka Kiełkowska, Grzegorz Bartoszewski, Michael J. Havey
Software Mentions: 2
Published: over 11 years ago

10.7554/eLife.49953

Kv2.1 mediates spatial and functional coupling of L-type calcium channels and ryanodine receptors in mammalian neurons
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Author(s): Nicholas C. Vierra, Michael Kirmiz, Deborah van der List, Luis Fernando Santana, James S. Trimmer
Software Mentions: 2
Published: almost 7 years ago

10.1186/gb-2012-13-2-r11

Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells
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Author(s): Najeeb U. Siddiqui, Xiao Li, Hua Luo, Angelo Karaiskakis, Huayun Hou, Thomas Kislinger, J. Timothy Westwood, Quaid Morris, Howard D. Lipshitz
Software Mentions: 2
Published: almost 15 years ago

10.3390/ijms21197278

Excess Protein O-GlcNAcylation Links Metabolic Derangements to Right Ventricular Dysfunction in Pulmonary Arterial Hypertension
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Author(s): Sasha Z. Prisco, Lauren Rose, François Potus, Lian Tian, Danchen Wu, Lynn M. Hartweck, Ruaa Al-Qazazi, M. Neuber‐Hess, Megan Eklund, Steven Hsu, Thenappan Thenappan, Stephen L. Archer, Kurt W. Prins
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms21218283

Insight into the Interactome of Intramitochondrial PKA Using Biotinylation-Proximity Labeling
Cited by: 5
Author(s): Yasmine Ould Amer, Étienne Hébert-Chatelain
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.63538

Curcumin promotes AApoAII amyloidosis and peroxisome proliferation in mice by activating the PPARα signaling pathway
Cited by: 7
Author(s): Jian Dai, Ying Liu, Fuyuki Kametani, Xiaoran Cui, Yuichi Igarashi, Jia Huo, Hiroki Miyahara, Masayuki Mori, Kenichi Higuchi
Software Mentions: 2
Published: over 5 years ago

10.3389/fvets.2020.584948

Protein Cargo of Extracellular Vesicles From Bovine Follicular Fluid and Analysis of Their Origin From Different Ovarian Cells
Cited by: 19
Author(s): Svetlana Uzbekova, Carmen Almiñana, Valérie Labas, Ana-Paula Teixeira-Gomes, Lucie Combes‐Soia, Guillaume Tsikis, Anaïs Vitorino Carvalho, Rustem Uzbekov, Г. Н. Сингина
Software Mentions: 2
Published: almost 6 years ago

10.1242/jcs.154880

Tyrosine phosphorylation of WIP releases bound WASP and impairs podosome assembly in macrophages
Cited by: 15
Author(s): Vineetha Vijayakumar, James Monypenny, Xing Judy Chen, Laura M. Machesky, Sérgio Lilla, Adrian J. Thrasher, Inés M. Antón, Yolanda Calle, Gareth E. Jones
Software Mentions: 2
Published: almost 13 years ago

10.1186/s13059-016-0951-y

OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees
Cited by: 65
Author(s): Song Gao, Denis Bertrand, Burton K. Chia, Niranjan Nagarajan
Software Mentions: 2
Published: over 10 years ago

10.7554/eLife.45916

In vivo identification of GTPase interactors by mitochondrial relocalization and proximity biotinylation
Cited by: 60
Author(s): Alison K. Gillingham, Jessie Bertram, Farida Begum, Sean Munro
Software Mentions: 2
Published: about 7 years ago

10.3390/ijms22105392

α-Synuclein A53T Binds to Transcriptional Adapter 2-Alpha and Blocks Histone H3 Acetylation
Cited by: 13
Author(s): Ji-Yeong Lee, Hanna Kim, Areum Jo, Rin Khang, Chi-Hu Park, Soo-Jeong Park, Eunsang Kwag, Joo‐Ho Shin
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2017.01292

Stress-Related Mitogen-Activated Protein Kinases Stimulate the Accumulation of Small Molecules and Proteins in Arabidopsis thaliana Root Exudates
Cited by: 13
Author(s): Nadine Strehmel, Wolfgang Hoehenwarter, Susann Mönchgesang, Petra Majovsky, Sylvia Krüger, Dierk Scheel, Justin Lee
Software Mentions: 2
Published: about 9 years ago

10.1186/1758-2946-5-5

Drug-likeness analysis of traditional Chinese medicines: 2. Characterization of scaffold architectures for drug-like compounds, non-drug-like compounds, and natural compounds from traditional Chinese medicines
Cited by: 23
Author(s): Sheng Tian, Youyong Li, Junmei Wang, Xiaojie Xu, Lei Xu, Xiaohong Wang, Lei Chen, Tingjun Hou
Software Mentions: 2
Published: over 13 years ago

10.7554/eLife.31807

Site-specific glycosylation regulates the form and function of the intermediate filament cytoskeleton
Cited by: 54
Author(s): Heather J Tarbet, Lee Dolat, Timothy J. Smith, Brett M Condon, E. Timothy O’Brien, Raphael H. Valdivia, Michael Boyce
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.59288

Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolism
Cited by: 41
Author(s): Robert J. Nichols, Benjamin LaFrance, Naiya R Phillips, Devon Radford, Luke M. Oltrogge, Luis E. Valentin-Alvarado, Amanda J. Bischoff, Eva Nogales, David F. Savage
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.60126

Autoregulatory control of microtubule binding in doublecortin-like kinase 1
Cited by: 14
Author(s): Regina L. Agulto, Melissa M Rogers, Tracy Tan, Amrita Ramkumar, Ashlyn M Downing, Hannah Bodin, Julia Castro, Dan W. Nowakowski, Kassandra M. Ori-McKenney
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.58795

Parallel global profiling of plant TOR dynamics reveals a conserved role for LARP1 in translation
Cited by: 53
Author(s): M Regina Scarpin, Samuel Leiboff, Jacob O. Brunkard
Software Mentions: 2
Published: almost 6 years ago

10.7554/eLife.09073

An ancient Pygo-dependent Wnt enhanceosome integrated by Chip/LDB-SSDP
Cited by: 45
Author(s): Marc Fiedler, Michael Graeb, Juliusz Mieszczanek, Trevor J. Rutherford, Christopher M. Johnson, Mariann Bienz
Software Mentions: 2
Published: about 11 years ago

10.7554/eLife.62047

Atomic structures of respiratory complex III2, complex IV, and supercomplex III2-IV from vascular plants
Cited by: 447
Author(s): María Maldonado, Fei Guo, James A. Letts
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.20882

Constitutive scaffolding of multiple Wnt enhanceosome components by Legless/BCL9
Cited by: 61
Author(s): Laurens M. van Tienen, Juliusz Mieszczanek, Marc Fiedler, Trevor J. Rutherford, Mariann Bienz
Software Mentions: 2
Published: over 9 years ago

10.1186/s13321-019-0391-2

Dataset’s chemical diversity limits the generalizability of machine learning predictions
Cited by: 59
Author(s): Marta Glavatskikh, Jules Leguy, Gilles Hunault, Thomas Cauchy, Benoit Da Mota
Software Mentions: 2
Published: almost 7 years ago

10.1074/jbc.M116.729806

Composition and Activity of the Non-canonical Gram-positive SecY2 Complex
Cited by: 8
Author(s): Mikaila Bandara, Robin A. Corey, Remy Martin, J. Mark Skehel, Ariel Blocker, Howard F. Jenkinson, Ian Collinson
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.01299

A new topology of the HK97-like fold revealed in Bordetella bacteriophage by cryoEM at 3.5 Å resolution
Cited by: 47
Author(s): Xing Zhang, Haixun Guo, Lei Jin, Elizabeth Czornyj, Asher Hodes, Wong H. Hui, Angela W Nieh, Jeff F. Miller, Z. Hong Zhou
Software Mentions: 2
Published: almost 13 years ago

10.1172/JCI86924

Extracellular matrix proteomics identifies molecular signature of symptomatic carotid plaques
Cited by: 108
Author(s): Sarah R. Langley, Karin Willeit, Athanasios Didangelos, Ljubica Matic, Philipp Skroblin, Javier Barallobre-Barreiro, Mariette Lengquist, Gregor Rungger, Alexander Kapustin, Ludmilla Kedenko, Chris Molenaar, Ruifang Lu, Temo Barwari, Gonca Suna, Xiaoke Yin, Bernhard Iglseder, Bernhard Paulweber, Peter Willeit, Joseph Shalhoub, Gérard Pasterkamp, Alun H. Davies, Claudia Monaco, Ulf Hedin, Catherine M. Shanahan, Johann Willeit, Stefan Kiechl, Manuel Mayr
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.39140

Rif1 inhibits replication fork progression and controls DNA copy number in Drosophila
Cited by: 36
Author(s): Alexander Munden, Zhan Rong, Amanda Sun, Rama Gangula, Simon Mallal, Jared Nordman
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.32660

Intracellular antibody signalling is regulated by phosphorylation of the Fc receptor TRIM21
Cited by: 53
Author(s): Claire F. Dickson, Adam J. Fletcher, Marina Vaysburd, Ji‐Chun Yang, Donna L. Mallery, Jingwei Zeng, Christopher M. Johnson, Stephen H. McLaughlin, Mark Skehel, Sarah Maslen, James Cruickshank, Nicolas Huguenin‐Dezot, Jason W. Chin, David Neuhaus, Leo C. James
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.M116.763243

Autophosphorylation-based Calcium (Ca2+) Sensitivity Priming and Ca2+/Calmodulin Inhibition of Arabidopsis thaliana Ca2+-dependent Protein Kinase 28 (CPK28)
Cited by: 44
Author(s): Kyle W. Bender, R. Kevin Blackburn, Jacqueline Monaghan, Paul Derbyshire, Frank L.H. Menke, Cyril Zipfel, Michael B. Goshe, Raymond E. Zielinski, Steven C. Huber
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.04525

Mucosal effects of tenofovir 1% gel
Cited by: 40
Author(s): Florian Hladik, Adam Burgener, Lamar Ballweber, Raphaël Gottardo, Lucia Vojtech, Slim Fourati, Jiyan Dai, Mark J. Cameron, Johanna Strobl, Sean M. Hughes, Craig Hoesley, P. Andrew, Sherri Johnson, Jeanna Piper, David R. Friend, T. Blake Ball, Ross D. Cranston, Kenneth H. Mayer, M. Juliana McElrath, Ian McGowan
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2017.01416

Development of an Efficient Protein Extraction Method Compatible with LC-MS/MS for Proteome Mapping in Two Australian Seagrasses Zostera muelleri and Posidonia australis
Cited by: 12
Author(s): Zhijian Jiang, Manoj Kumar, Matthew P. Padula, Mathieu Pernice, Tim Kahlke, Mikael Kim, Peter J. Ralph
Software Mentions: 2
Published: about 9 years ago

10.3390/jcm10112446

Characteristics of the Urinary Proteome in Women with Overactive Bladder Syndrome: A Case-Control Study
Cited by: 1
Author(s): Marianne Koch, Pavel Lyatoshinsky, Goran Mitulović, Barbara Bodner‐Adler, Sören Lange, Engelbert Hanzal, Wolfgang Umek
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.01230

Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons
Cited by: 6
Author(s): Matthew Dommel, Jong‐Nam Oh, José C. Huguet‐Tapia, Endrick Guy, Hélène Boulain, Akiko Sugio, M. Murugan, Fabrice Legeai, Michelle Heck, Charlotte M. Smith, Frank F. White
Software Mentions: 2
Published: about 6 years ago

10.1038/hortres.2014.39

Dynamic changes in the date palm fruit proteome during development and ripening
Cited by: 35
Author(s): Claudius Marondedze, Chris Gehring, Ludivine Thomas
Software Mentions: 2
Published: about 12 years ago

10.1074/jbc.RA119.007504

The priming factor CAPS1 regulates dense-core vesicle acidification by interacting with rabconnectin3β/WDR7 in neuroendocrine cells
Cited by: 7
Author(s): Ellen Crummy, Muralidharan Mani, John C. Thellman, Thomas F.J. Martin
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.RA119.010486

Moonlighting matrix metalloproteinase substrates: Enhancement of proinflammatory functions of extracellular tyrosyl-tRNA synthetase upon cleavage
Cited by: 14
Author(s): Parker G. Jobin, Nestor Solis, Yoan Machado, Peter A. Bell, K. Simran, Nam Hoon Kwon, Sung Hoon Kim, Christopher M. Overall, Georgina S. Butler
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.RA119.012517

Phosphorylation of the overlooked tyrosine 310 regulates the structure, aggregation, and microtubule- and lipid-binding properties of Tau
Cited by: 27
Author(s): Nadine Ait-Bouziad, Anass Chiki, Galina Limorenko, Shifeng Xiao, David Eliezer, Hilal A. Lashuel
Software Mentions: 2
Published: over 6 years ago

10.1038/hortres.2016.29

Relative quantification of phosphoproteomic changes in grapevine (Vitis vinifera L.) leaves in response to abscisic acid
Cited by: 14
Author(s): Supakan Rattanakan, Iniga S. George, Paul A. Haynes, Grant R. Cramer
Software Mentions: 2
Published: over 10 years ago

10.3390/ijms18071440

Semi-Quantitative Mass Spectrometry in AML Cells Identifies New Non-Genomic Targets of the EZH2 Methyltransferase
Cited by: 6
Author(s): Yordan Sbirkov, Colin Kwok, Amandeep Bhamra, Andrew J. Thompson, Veronica Gil, Arthur Zelent, Kevin Petrie
Software Mentions: 2
Published: over 9 years ago

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