pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0124473

Comprehensive Evaluation of Toxoplasma gondii VEG and Neospora caninum LIV Genomes with Tachyzoite Stage Transcriptome and Proteome Defines Novel Transcript Features
Cited by: 29
Author(s): Abhinay Ramaprasad, Tobias Mourier, Raeece Naeem, Tareq B. Malas, Ehab M. Moussa, Aswini K. Panigrahi, Sarah J. Vermont, Thomas D. Otto, Jonathan M. Wastling, Arnab Pain
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0027811

Radiation–Induced Signaling Results in Mitochondrial Impairment in Mouse Heart at 4 Weeks after Exposure to X-Rays
Cited by: 130
Author(s): Žarko Barjaktarović, Dominik Schmaltz, Alena Shyla, Omid Azimzadeh, Sabine Schulz, Julia Haagen, Wolfgang Dörr, Hakan Sarioglu, Alexander Schäfer, Michael J. Atkinson, Hans Zischka, Soile Tapio
Software Mentions: 2
Published: almost 15 years ago

10.1186/1476-4598-12-62

Biochemical and biological characterization of exosomes containing prominin-1/CD133
Cited by: 90
Author(s): Germana Rappa, Javier Mercapide, Fabio Anzanello, R. Marshall Pope, Aurelio Lorico
Software Mentions: 2
Published: about 13 years ago

10.3390/biology9090294

A Poplar Rust Effector Protein Associates with Protein Disulfide Isomerase and Enhances Plant Susceptibility
Cited by: 8
Author(s): Mst Hur Madina, Saifur Rahman, Xiaoqiang Huang, Yang Zhang, Huanquan Zheng, Hugo Germain
Software Mentions: 2
Published: almost 6 years ago

10.3390/proteomes6040039

Exploring Morphine-Triggered PKC-Targets and Their Interaction with Signaling Pathways Leading to Pain via TrkA
Cited by: 12
Author(s): Darlene Aparecida Pena, Mariana Lemos Duarte, Dimitrius T. Pramio, Lakshmi A. Devi, Deborah Schechtman
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2164-15-536

Characterization and potential evolutionary impact of transposable elements in the genome of Cochliobolus heterostrophus
Cited by: 27
Author(s): Mateus Ferreira Santana, José Cleydson Ferreira da Silva, Eduardo S. G. Mizubuti, Elza Fernandes de Araújo, Bradford Condon, B. Gillian Turgeon, Marisa Vieira de Queiroz
Software Mentions: 2
Published: about 12 years ago

10.7717/peerj.3350

Effects of arginine vasopressin on the urine proteome in rats
Cited by: 3
Author(s): Manxia An, Yanying Ni, Xundou Li, Youhe Gao
Software Mentions: 2
Published: over 9 years ago

10.1186/1756-6606-4-28

Impairment of adult hippocampal neural progenitor proliferation by methamphetamine: role for nitrotyrosination
Cited by: 49
Author(s): Arun Venkatesan, Lerna Uzasci, Zhaohui Chen, Labchan Rajbhandari, Carol Anderson, Myoung Hwa Lee, M.A. Bianchet, Robert J. Cotter, Hongjun Song, Avindra Nath
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0064621

Transcriptome and Proteome Data Reveal Candidate Genes for Pollinator Attraction in Sexually Deceptive Orchids
Cited by: 44
Author(s): Khalid E. M. Sedeek, Weihong Qi, Monica A. Schauer, Alok Gupta, Lucy Poveda, Shuqing Xu, Zhong‐Jian Liu, Ueli Grossniklaus, Florian P. Schiestl, Philipp M. Schlüter
Software Mentions: 2
Published: over 13 years ago

10.1186/s12864-021-07678-z

ddRAD sequencing: an emerging technology added to the biosecurity toolbox for tracing the origin of brown marmorated stink bug, Halyomorpha halys (Hemiptera: Pentatomidae)
Cited by: 6
Author(s): Yan Ji, Gábor Vétek, Chandan Pal, Jinping Zhang, Rania Gmati, Qing-Hai Fan, Disna N. Gunawardana, Allan Burne, Diane Anderson, K. B. Rebijith, Sherly George, Péter Farkas, Dongmei Li
Software Mentions: 2
Published: over 5 years ago

10.7717/peerj.7352

Comprehensive map and functional annotation of the mouse white adipose tissue proteome
Cited by: 7
Author(s): Xiaonan Tang, Juan Li, Weigang Zhao, Hui Sun, Jing Li, Zhu-Fang She, Tao Yuan, Shuainan Liu, Quan Liu, Yong Fu, Wei Sun
Software Mentions: 2
Published: about 7 years ago

10.1126/sciadv.abg4102

A microbial eukaryote with a unique combination of purple bacteria and green algae as endosymbionts
Cited by: 19
Author(s): Sergio A. Muñoz-Gómez, M. Kreutz, Sebastian Hess
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0012671

Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae
Cited by: 150
Author(s): Nikoleta G. Tsvetanova, Daniel M. Klass, Julia Salzman, Patrick O. Brown
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0080737

PRICKLE1 Interaction with SYNAPSIN I Reveals a Role in Autism Spectrum Disorders
Cited by: 37
Author(s): Lily Paemka, Vinit B. Mahajan, Jessica M. Skeie, Levi P. Sowers, Salleh N. Ehaideb, Pedro González-Alegre, Toshikuni Sasaoka, Hirotaka Tao, Asuka Miyagi, Naoto Ueno, Keizo Takao, Tsuyoshi Miyakawa, Shu Wu, Benjamin W. Darbro, Polly J. Ferguson, Andrew A. Pieper, Jeremiah K. Britt, John A. Wemmie, Danielle S. Rudd, Thomas H. Wassink, Hatem El‐Shanti, Heather C Mefford, Gemma L. Carvill, J. Robert Manak, Alexander G. Bassuk
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0094166

Biochemical Properties and Atomic Resolution Structure of a Proteolytically Processed β-Mannanase from Cellulolytic Streptomyces sp. SirexAA-E
Cited by: 16
Author(s): Taichi E. Takasuka, Justin Acheson, C.M. Bianchetti, Ben M. Prom, Lai F. Bergeman, Adam J. Book, Cameron R. Currie, Brian G. Fox
Software Mentions: 2
Published: over 12 years ago

10.7717/peerj.506

Human hair shaft proteomic profiling: individual differences, site specificity and cuticle analysis
Cited by: 48
Author(s): Chelsea Nicole Laatsch, Blythe Durbin‐Johnson, David M. Rocke, Sophie Mukwana, Abby B. Newland, Michael J. Flagler, Michael Davis, Richard A. Eigenheer, Brett S. Phinney, Robert H. Rice
Software Mentions: 2
Published: about 12 years ago

10.1038/s41598-020-68985-1

A benzimidazole inhibitor attenuates sterile inflammation induced in a model of systemic autoinflammation in female mice
Cited by: 4
Author(s): Federica Agliano, Keaton Karlinsey, Michael Ragazzi, Antoine Ménoret, Anthony T. Vella
Software Mentions: 2
Published: about 6 years ago

10.1186/s12862-021-01910-w

Odorant-binding proteins in canine anal sac glands indicate an evolutionarily conserved role in mammalian chemical communication
Cited by: 5
Author(s): Sunita Janssenswillen, Kim Roelants, Sébastien Carpentier, H. de Rooster, Mieke Metzemaekers, Bram Vanschoenwinkel, Paul Proost, Franky Bossuyt
Software Mentions: 2
Published: almost 5 years ago

10.1007/s00726-021-03006-7

Gamma-gliadin specific celiac disease antibodies recognize p31-43 and p57-68 alpha gliadin peptides in deamidation related manner as a result of cross-reaction
Cited by: 7
Author(s): Ádám Diós, Rita Elek, Ildikò Szabó, Szilvia Horváth, Judit Gyimesi, Róbert Király, Katharina Werkstetter, Sibylle Koletzko, László Fésüs, Ilma Rita Korponay-Szabó
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0168913

Conserved Lysine Acetylation within the Microtubule-Binding Domain Regulates MAP2/Tau Family Members
Cited by: 16
Author(s): Andrew Hwang, Hanna Trzeciakiewicz, Dave Friedmann, Chao Yuan, Ronen Marmorstein, Virginia M.‐Y. Lee, Todd J. Cohen
Software Mentions: 2
Published: over 9 years ago

10.14814/phy2.12988

Reduced mitochondrial mass and function add to age-related susceptibility toward diet-induced fatty liver in C57BL/6J mice
Cited by: 27
Author(s): Kerstin Lohr, Fiona Pachl, Amin Moghaddas Gholami, Kerstin E. Geillinger, Hannelore Daniel, Bernhard Küster, Martin Klingenspor
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0186461

Software-aided approach to investigate peptide structure and metabolic susceptibility of amide bonds in peptide drugs based on high resolution mass spectrometry
Cited by: 14
Author(s): Tatiana Radchenko, Andreas Brink, Yves Siegrist, Christopher J. Kochansky, Alison Bateman, Fabien Fontaine, Luca Morettoni, Ismael Zamora
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-021-86284-1

Ibuprofen alters epoxide hydrolase activity and epoxy-oxylipin metabolites associated with different metabolic pathways in murine livers
Cited by: 4
Author(s): Shuchita Tiwari, Jun Yang, Christophe Morisseau, Blythe Durbin‐Johnson, Bruce D. Hammock, Aldrin V. Gomes
Software Mentions: 2
Published: over 5 years ago

10.1007/s00401-020-02178-y

SFPQ and Tau: critical factors contributing to rapid progression of Alzheimer’s disease
Cited by: 41
Author(s): Neelam Younas, Saima Zafar, Mohsin Shafiq, Aneeqa Noor, Anna Siegert, Amandeep Singh Arora, А. П. Галкин, Ayesha Zafar, Mathias Schmitz, Christine Stadelmann, Olivier Andréoletti, Isidre Ferrer, Inga Zerr
Software Mentions: 2
Published: about 6 years ago

10.3390/microorganisms9081593

Glucosidase Inhibitors Screening in Microalgae and Cyanobacteria Isolated from the Amazon and Proteomic Analysis of Inhibitor Producing Synechococcus sp. GFB01
Cited by: 6
Author(s): Diana Gomes Gradíssimo, Vivian Cássia Oliveira da Silva, Luciana Pereira Xavier, Sidney Vasconcelos do Nascimento, Rafael Borges da Silva Valadares, Sílvia Maria Mathes Faustino, Maria Paula Cruz Schneider, Agenor Valadares Santos
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0250296

Sodium butyrate modulates chicken macrophage proteins essential for Salmonella Enteritidis invasion
Cited by: 3
Author(s): Anamika Gupta, Mohit Bansal, Rohana Liyanage, Abhinav Upadhyay, N. C. Rath, Annie Donoghue, Xiaolun Sun
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0075446

A Purine Analog Synergizes with Chloroquine (CQ) by Targeting Plasmodium falciparum Hsp90 (PfHsp90)
Cited by: 23
Author(s): Dea Shahinas, Asongna Folefoc, Tony Taldone, Gabriela Chiosis, Ian Crandall, Dylan R. Pillai
Software Mentions: 2
Published: almost 13 years ago

10.1371/journal.pone.0028949

Proteome Changes Driven by Phosphorus Deficiency and Recovery in the Brown Tide-Forming Alga Aureococcus anophagefferens
Cited by: 60
Author(s): Louie L. Wurch, Erin M. Bertrand, Mak A. Saito, Benjamin A. S. Van Mooy, Sonya T. Dyhrman
Software Mentions: 2
Published: over 14 years ago

10.1093/pcp/pcaa170

A Novel Signaling Pathway Required for Arabidopsis Endodermal Root Organization Shapes the Rhizosphere Microbiome
Cited by: 11
Author(s): Julius Dürr, Guilhem Reyt, Stijn Spaepen, Sally Hilton, Cathal Meehan, Qi Wu, Takehiro Kamiya, Paulina Flis, H. G. Dickinson, Attila Fehér, Shivshankar Umashankar, Shruti Pavagadhi, Sanjay Swarup, David E. Salt, Gary D. Bending, José Gutierrez-Marcos
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2020.00598

Elucidating the Regulon of a Fur-like Protein in Mycobacterium avium subsp. paratuberculosis (MAP)
Cited by: 6
Author(s): Fernanda Miyagaki Shoyama, Taveesak Janetanakit, John P. Bannantine, Raúl G. Barletta, Srinand Sreevatsan
Software Mentions: 2
Published: over 6 years ago

10.1128/mBio.00603-21

Toxoplasma gondii Matrix Antigen 1 Is a Secreted Immunomodulatory Effector
Cited by: 14
Author(s): Tadakimi Tomita, Debanjan Mukhopadhyay, Bing Han, Rama R. Yakubu, Vincent Tu, Joshua Mayoral, Tatsuki Sugi, Yanfen Ma, Jeroen P. J. Saeij, Louis M. Weiss
Software Mentions: 2
Published: about 5 years ago

10.1111/tpj.13743

Multiple marker abundance profiling: combining selected reaction monitoring and data‐dependent acquisition for rapid estimation of organelle abundance in subcellular samples
Cited by: 13
Author(s): Cornelia M. Hooper, Tim J. Stevens, Anna Maija Saukkonen, Ian Castleden, Pragya Singh, Gregory W. Mann, Bertrand Fabre, Jun Ito, Michael J. Deery, Kathryn S. Lilley, Young-Mo Kim, A. Harvey Millar, Joshua L. Heazlewood, Harriet T. Parsons
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2017.01292

Stress-Related Mitogen-Activated Protein Kinases Stimulate the Accumulation of Small Molecules and Proteins in Arabidopsis thaliana Root Exudates
Cited by: 13
Author(s): Nadine Strehmel, Wolfgang Hoehenwarter, Susann Mönchgesang, Petra Majovsky, Sylvia Krüger, Dierk Scheel, Justin Lee
Software Mentions: 2
Published: about 9 years ago

10.1128/IAI.00537-19

Proximity Labeling To Map Host-Pathogen Interactions at the Membrane of a Bacterium-Containing Vacuole in Chlamydia trachomatis-Infected Human Cells
Cited by: 21
Author(s): Macy G. Olson, Ray E. Widner, Lisa M. Jorgenson, Alyssa Lawrence, Dragana Lagundžin, Nicholas T. Woods, Scot P. Ouellette, Elizabeth A. Rucks
Software Mentions: 2
Published: almost 7 years ago

10.1172/JCI86924

Extracellular matrix proteomics identifies molecular signature of symptomatic carotid plaques
Cited by: 108
Author(s): Sarah R. Langley, Karin Willeit, Athanasios Didangelos, Ljubica Matic, Philipp Skroblin, Javier Barallobre-Barreiro, Mariette Lengquist, Gregor Rungger, Alexander Kapustin, Ludmilla Kedenko, Chris Molenaar, Ruifang Lu, Temo Barwari, Gonca Suna, Xiaoke Yin, Bernhard Iglseder, Bernhard Paulweber, Peter Willeit, Joseph Shalhoub, Gérard Pasterkamp, Alun H. Davies, Claudia Monaco, Ulf Hedin, Catherine M. Shanahan, Johann Willeit, Stefan Kiechl, Manuel Mayr
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-60619-w

Rigorous characterization of urinary extracellular vesicles (uEVs) in the low centrifugation pellet - a neglected source for uEVs
Cited by: 40
Author(s): Luca Musante, Sai Vineela Bontha, Sabrina La Salvia, Angela Fernandez-Piñeros, Joanne Lannigan, Thu H. Le, Valeria R. Mas, Uta Erdbrügger
Software Mentions: 2
Published: over 6 years ago

10.1038/srep31098

The Secreted Protease PrtA Controls Cell Growth, Biofilm Formation and Pathogenicity in Xylella fastidiosa
Cited by: 36
Author(s): Hossein Gouran, Hyrum Gillespie, Rafael Nascimento, Sandeep Chakraborty, Paulo A. Zaini, Aaron Jacobson, Brett S. Phinney, David Dolan, Blythe Durbin‐Johnson, Elena S. Antonova, Steven E. Lindow, Matthew S. Mellema, Luiz Ricardo Goulart, Abhaya M. Dandekar
Software Mentions: 2
Published: about 10 years ago

10.15252/embr.201744807

<scp>PAWS</scp> 1 controls Wnt signalling through association with casein kinase 1α
Cited by: 24
Author(s): Polyxeni Bozatzi, Kevin S. Dingwell, Kevin Z. L. Wu, Fay Cooper, Timothy D. Cummins, Luke D. Hutchinson, J. Vogt, Nicola T. Wood, Thomas Macartney, Joby Varghese, Robert Gourlay, David G. Campbell, James C. Smith, Gopal P. Sapkota
Software Mentions: 2
Published: over 8 years ago

10.1186/1559-0275-11-23

Deciphering the peptidome of urine from ovarian cancer patients and healthy controls
Cited by: 36
Author(s): Christopher R. Smith, Ihor Batruch, Josep Miquel Bauça, Hari Kosanam, Julia Ridley, Marcus Q. Bernardini, Felix Leung, Eleftherios P. Diamandis, Vathany Kulasingam
Software Mentions: 2
Published: over 12 years ago

10.1186/s12014-019-9228-2

Rapid detection of colistin resistance protein MCR-1 by LC–MS/MS
Cited by: 11
Author(s): Honghui Wang, Yong Chen, Jeffrey R Strich, Steven K. Drake, Jung Ho Youn, Avi Z. Rosenberg, Marjan Guček, Patrick T. McGann, Anthony F. Suffredini, John P. Dekker
Software Mentions: 2
Published: over 7 years ago

10.1038/srep33935

A novel affinity-based method for the isolation of highly purified extracellular vesicles
Cited by: 318
Author(s): Wataru Nakai, Takeshi Yoshida, Diego Díez, Yuji Miyatake, Takahiro Nishibu, Naoko Imawaka, Ken Naruse, Yoshifusa Sadamura, Rikinari Hanayama
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep34209

Novel highly divergent reassortant bat rotaviruses in Cameroon, without evidence of zoonosis
Cited by: 43
Author(s): Claude Kwe Yinda, Mark Zeller, Nádia Conceição-Neto, Piet Maes, Ward Deboutte, Leen Beller, Elisabeth Heylen, Stephen Mbigha Ghogomu, Marc Van Ranst, Jelle Matthijnssens
Software Mentions: 2
Published: almost 10 years ago

10.1186/1479-5876-10-35

Hyperglycemic conditions inhibit C3-mediated immunologic control of Staphylococcus aureus
Cited by: 37
Author(s): Pamela S. Hair, Charlene G. Echague, Reuben D. Rohn, Neel K. Krishna, Julius O. Nyalwidhe, Kenji M. Cunnion
Software Mentions: 2
Published: over 14 years ago

10.3389/fpls.2020.01230

Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons
Cited by: 6
Author(s): Matthew Dommel, Jong‐Nam Oh, José C. Huguet‐Tapia, Endrick Guy, Hélène Boulain, Akiko Sugio, M. Murugan, Fabrice Legeai, Michelle Heck, Charlotte M. Smith, Frank F. White
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-018-34174-4

Analysis of the Trichuris suis excretory/secretory proteins as a function of life cycle stage and their immunomodulatory properties
Cited by: 36
Author(s): Louis‐Philippe Leroux, Mohamad Nasr, Rajesh M. Valanparambil, Mifong Tam, Bruce A. Rosa, E A Siciliani, Dolores E. Hill, Dante S. Zarlenga, Maritza Jaramillo, Joel V. Weinstock, Timothy G. Geary, Mary M. Stevenson, Joseph F. Urban, Makedonka Mitreva, Armando Jardim
Software Mentions: 2
Published: almost 8 years ago

10.1186/gb-2012-13-2-r11

Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells
Cited by: 54
Author(s): Najeeb U. Siddiqui, Xiao Li, Hua Luo, Angelo Karaiskakis, Huayun Hou, Thomas Kislinger, J. Timothy Westwood, Quaid Morris, Howard D. Lipshitz
Software Mentions: 2
Published: over 14 years ago

10.2196/13780

Generative Participatory Design Methodology to Develop Electronic Health Interventions: Systematic Literature Review
Cited by: 53
Author(s): Pieter Vandekerckhove, Marleen de Mul, Wichor M. Bramer, Antoinette de Bont
Software Mentions: 2
Published: over 6 years ago

10.1038/srep36699

Insights into a novel nuclear function for Fascin in the regulation of the amino-acid transporter SLC3A2
Cited by: 21
Author(s): Amine Saad, Krikor Bijian, Dinghong Qiu, Sabrina Daniela da Silva, Maud Marques, Chia-Hao Chang, Hassan Nassour, Dindial Ramotar, Sambasivarao Damaraju, John R. Mackey, Tarek A. Bismar, Michael Witcher, Moulay A. Alaoui‐Jamali
Software Mentions: 2
Published: almost 10 years ago

10.1111/jnc.14845

NYX‐2925 induces metabotropicN‐methyl‐<scp>d</scp>‐aspartate receptor (NMDAR) signaling that enhances synaptic NMDAR and α‐amino‐3‐hydroxy‐5‐methyl‐4‐isoxazolepropionic acid receptor
Cited by: 6
Author(s): M. Scott Bowers, Luisa P. Cacheaux, Srishti U. Sahu, Matthew Schmidt, Joseph A. Sennello, Katherine Leaderbrand, M. Amin Khan, Roger A. Kroes, Joseph R. Moskal
Software Mentions: 2
Published: almost 7 years ago

10.1186/1866-1955-6-36

PreImplantation factor (PIF*) promotes embryotrophic and neuroprotective decidual genes: effect negated by epidermal growth factor
Cited by: 17
Author(s): Christina M. Duzyj, Michael J. Paidas, Lellean JeBailey, Jing Huang, Eytan R. Barnea
Software Mentions: 2
Published: about 12 years ago

10.3389/fpls.2018.01882

Development of a Rapid in planta BioID System as a Probe for Plasma Membrane-Associated Immunity Proteins
Cited by: 37
Author(s): Brendon Conlan, Thomas Stoll, Jeffrey J. Gorman, Isabel M. L. Saur, John P. Rathjen
Software Mentions: 2
Published: over 7 years ago

10.1242/jcs.154880

Tyrosine phosphorylation of WIP releases bound WASP and impairs podosome assembly in macrophages
Cited by: 15
Author(s): Vineetha Vijayakumar, James Monypenny, Xing Judy Chen, Laura M. Machesky, Sérgio Lilla, Adrian J. Thrasher, Inés M. Antón, Yolanda Calle, Gareth E. Jones
Software Mentions: 2
Published: over 12 years ago

10.15252/embj.201798714

Evidence for the nuclear import of histones H3.1 and H4 as monomers
Cited by: 39
Author(s): Michael James Apta‐Smith, Juan R. Hernández-Fernaud, Andrew Bowman
Software Mentions: 2
Published: about 8 years ago

10.1038/srep37643

Nucleoside-Diphosphate-Kinase of P. gingivalis is Secreted from Epithelial Cells In the Absence of a Leader Sequence Through a Pannexin-1 Interactome
Cited by: 25
Author(s): Kalina R. Atanasova, Jungnam Lee, JoAnn S. Roberts, Kyulim Lee, David M. Ojcius, Özlem Yılmaz
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13321-019-0391-2

Dataset’s chemical diversity limits the generalizability of machine learning predictions
Cited by: 59
Author(s): Marta Glavatskikh, Jules Leguy, Gilles Hunault, Thomas Cauchy, Benoit Da Mota
Software Mentions: 2
Published: almost 7 years ago

10.1111/1462-2920.13930

Transcriptome and proteome dynamics in chemostat culture reveal howCampylobacter jejunimodulates metabolism, stress responses and virulence factors upon changes in oxygen availability
Cited by: 28
Author(s): Edward Guccione, John J. Kendall, Andrew Hitchcock, Nitanshu Garg, Michael A. White, Francis Mulholland, Robert K. Poole, David J. Kelly
Software Mentions: 2
Published: almost 9 years ago

10.3390/cells8020192

In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes
Cited by: 35
Author(s): Georg Tascher, Audrey Burban, Sandrine Camus, Marine Plumel, Stéphanie Chanon, Rémy Le Guével, В. П. Шевченко, Alain Van Dorsselaer, Étienne Lefai, Christiane Guguen‐Guillouzo, Fabrice Bertile
Software Mentions: 2
Published: over 7 years ago

10.1186/s13072-016-0087-z

Pax6 associates with H3K4-specific histone methyltransferases Mll1, Mll2, and Set1a and regulates H3K4 methylation at promoters and enhancers
Cited by: 23
Author(s): Jian Sun, Yilin Zhao, Rebecca McGreal, Yamit Cohen‐Tayar, Shira Rockowitz, Carola Wilczek, Ruth Ashery‐Padan, David Shechter, Deyou Zheng, Aleš Cvekl
Software Mentions: 2
Published: about 10 years ago

10.18632/oncotarget.14272

CD147: a small molecule transporter ancillary protein at the crossroad of multiple hallmarks of cancer and metabolic reprogramming
Cited by: 34
Author(s): Agnieszka A. Kendrick, Johnathon Schafer, Monika Dzieciątkowska, Travis Nemkov, Angelo D’Alessandro, Deepika Neelakantan, Heide L. Ford, Chad G. Pearson, Colin D. Weekes, Kirk C. Hansen, Elan Eisenmesser
Software Mentions: 2
Published: over 9 years ago

10.1038/srep39024

Comparative Proteomics Reveals that Phosphorylation of β Carbonic Anhydrase 1 Might be Important for Adaptation to Drought Stress in Brassica napus
Cited by: 31
Author(s): Limin Wang, Xiang Jin, Qingbin Li, Xuchu Wang, Zaiyun Li, Xiaoming Wu
Software Mentions: 2
Published: over 9 years ago

10.3389/fpls.2017.01416

Development of an Efficient Protein Extraction Method Compatible with LC-MS/MS for Proteome Mapping in Two Australian Seagrasses Zostera muelleri and Posidonia australis
Cited by: 12
Author(s): Zhijian Jiang, Manoj Kumar, Matthew P. Padula, Mathieu Pernice, Tim Kahlke, Mikael Kim, Peter J. Ralph
Software Mentions: 2
Published: about 9 years ago

10.1038/srep38556

Molecular characterization of firefly nuptial gifts: a multi-omics approach sheds light on postcopulatory sexual selection
Cited by: 12
Author(s): Nooria Al‐Wathiqui, Timothy R. Fallon, Adam South, Jing‐Ke Weng, Sara M. Lewis
Software Mentions: 2
Published: over 9 years ago

10.3390/cells7120269

Proteogenomic Analysis of Burkholderia Species Strains 25 and 46 Isolated from Uraniferous Soils Reveals Multiple Mechanisms to Cope with Uranium Stress
Cited by: 15
Author(s): Meenakshi Agarwal, Ashish Pathak, Rajesh Rathore, Om Prakash, Rakesh Singh, Rajneesh Jaswal, John C. Seaman, Ashvini Chauhan
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2018.00661

Genotype-Specific Growth and Proteomic Responses of Maize Toward Salt Stress
Cited by: 20
Author(s): Ana L C Soares, Christoph‐Martin Geilfus, Sébastien Carpentier
Software Mentions: 2
Published: over 8 years ago

10.18632/oncotarget.16835

Upregulation of minichromosome maintenance complex component 3 during epithelial-to-mesenchymal transition in human prostate cancer
Cited by: 25
Author(s): Paul A. Stewart, Zahraa I. Khamis, Haiyen E. Zhau, Peng Duan, Quan‐Lin Li, Leland W.K. Chung, Qing‐Xiang Amy Sang
Software Mentions: 2
Published: over 9 years ago

10.1016/j.dib.2015.02.013

Supporting data for comparative proteomic analysis of Listeria monocytogenes ATCC 7644 exposed to a sublethal concentration of nisin
Cited by: 0
Author(s): Kendi Nishino Miyamoto, Karina Mariante Monteiro, Karin da Silva Caumo, Karina Rodrigues Lorenzatto, Henrique Bunselmeyer Ferreira, Adriano Brandelli
Software Mentions: 2
Published: over 11 years ago

10.1038/s41598-018-32530-y

The Cytotoxic Necrotizing Factor of Yersinia pseudotuberculosis (CNFy) is Carried on Extracellular Membrane Vesicles to Host Cells
Cited by: 14
Author(s): Ajay K. Monnappa, Wasimul Bari, Jeong Kon Seo, Robert J. Mitchell
Software Mentions: 2
Published: almost 8 years ago

10.1038/s42003-021-02214-x

Placental secretome characterization identifies candidates for pregnancy complications
Cited by: 16
Author(s): Tina Napso, Xiaohui Zhao, Marta Ibañez-Lligoña, Ionel Sandovici, Richard G. Kay, Amy L. George, Fiona M. Gribble, Frank Reimann, Claire L Meek, Russell S. Hamilton, Amanda N. Sferruzzi‐Perri
Software Mentions: 2
Published: over 5 years ago

10.1242/dev.185421

Ykt6-dependent endosomal recycling is required for Wnt secretion in the Drosophila wing epithelium
Cited by: 13
Author(s): Karen Linnemannstöns, Leonie Witte, Pradhipa Karuna, Jeanette Clarissa Kittel, Adi Danieli, Denise Madeddu, Lena Nitsch, Mona Honemann‐Capito, Ferdi Grawe, Andreas Wodarz, Julia Christina Gross
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.M116.729806

Composition and Activity of the Non-canonical Gram-positive SecY2 Complex
Cited by: 8
Author(s): Mikaila Bandara, Robin A. Corey, Remy Martin, J. Mark Skehel, Ariel Blocker, Howard F. Jenkinson, Ian Collinson
Software Mentions: 2
Published: almost 10 years ago

10.1016/j.dib.2014.09.006

Data set for the proteomic inventory and quantitative analysis of chicken uterine fluid during eggshell biomineralization
Cited by: 12
Author(s): Pauline Marie, Valérie Labas, Aurélien Brionne, Grégoire Harichaux, Christelle Hennequet-Antier, Yves Nys, Joël Gautron
Software Mentions: 2
Published: almost 12 years ago

10.1038/srep43959

Locus-specific Retention Predictor (LsRP): A Peptide Retention Time Predictor Developed for Precision Proteomics
Cited by: 12
Author(s): Wenyuan Lu, Xiaohui Liu, Shanshan Liu, Weiqian Cao, Yang Zhang, Pengyuan Yang
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.M116.763243

Autophosphorylation-based Calcium (Ca2+) Sensitivity Priming and Ca2+/Calmodulin Inhibition of Arabidopsis thaliana Ca2+-dependent Protein Kinase 28 (CPK28)
Cited by: 44
Author(s): Kyle W. Bender, R. Kevin Blackburn, Jacqueline Monaghan, Paul Derbyshire, Frank L.H. Menke, Cyril Zipfel, Michael B. Goshe, Raymond E. Zielinski, Steven C. Huber
Software Mentions: 2
Published: over 9 years ago

10.3390/cells9092070

Dynamic High-Sensitivity Quantitation of Procollagen-I by Endogenous CRISPR-Cas9 NanoLuciferase Tagging
Cited by: 7
Author(s): Ben Calverley, Karl E. Kadler, Adam Pickard
Software Mentions: 2
Published: about 6 years ago

10.1016/j.dib.2020.106064

Tandem mass tagged dataset used to characterize muscle-specific proteome changes in beef during early postmortem period
Cited by: 2
Author(s): Chaoyu Zhai, B. A. Djimsa, Kitty Brown, Jessica E. Prenni, D. R. Woerner, K. E. Belk, Mahesh N. Nair
Software Mentions: 2
Published: almost 6 years ago

10.18632/oncotarget.25106

Proteomic screening identifies the zonula occludens protein ZO-1 as a new partner for ADAM12 in invadopodia-like structures
Cited by: 10
Author(s): Bassil Dekky, Michael W. Ruff, Dominique Bonnier, Vincent Legagneux, Nathalie Théret
Software Mentions: 2
Published: over 8 years ago

10.1534/genetics.119.302851

Imipridone Anticancer Compounds Ectopically Activate the ClpP Protease and Represent a New Scaffold for Antibiotic Development
Cited by: 30
Author(s): Samuel Jacques, Almer M. van der Sloot, Caroline Huard, Jasmin Coulombe-Huntington, Sarah Tsao, Sylvain Tollis, Thierry Bertomeu, Elizabeth Culp, Daniel Pallant, Michael A. Cook, Éric Bonneil, Pierre Thibault, Gerard D. Wright, Mike Tyers
Software Mentions: 2
Published: over 6 years ago

10.1038/srep09325

Clustered Distribution of Natural Product Leads of Drugs in the Chemical Space as Influenced by the Privileged Target-Sites
Cited by: 18
Author(s): Tao Lin, Feng Zhu, Qing Chu, Cheng Zhang, Shangying Chen, Peng Zhang, Cunlong Zhang, Chunyan Tan, Chunmei Gao, Zhe Chen, Yuyang Jiang, Yu Zong Chen
Software Mentions: 2
Published: over 11 years ago

10.1186/1758-2946-5-5

Drug-likeness analysis of traditional Chinese medicines: 2. Characterization of scaffold architectures for drug-like compounds, non-drug-like compounds, and natural compounds from traditional Chinese medicines
Cited by: 23
Author(s): Sheng Tian, Youyong Li, Junmei Wang, Xiaojie Xu, Lei Xu, Xiaohong Wang, Lei Chen, Tingjun Hou
Software Mentions: 2
Published: over 13 years ago

10.1186/s12014-017-9172-y

A proteomic approach to understanding the pathogenesis of idiopathic macular hole formation
Cited by: 10
Author(s): Pingbo Zhang, Mingyan Zhu, Yuming Zhao, Jiang Qian, Craig Dufresne, Randi Turner, Richard D. Semba, Sharon D. Solomon
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep46239

Little Cigars are More Toxic than Cigarettes and Uniquely Change the Airway Gene and Protein Expression
Cited by: 25
Author(s): Arunava Ghosh, Sabri Abdelwahab, Steven L. Reeber, Boris Reidel, Abigail J. Marklew, Andrew J. Garrison, Shernita Lee, Hong Dang, Amy H. Herring, Gary L. Glish, Mehmet Kesımer, Robert Tarran
Software Mentions: 2
Published: over 9 years ago

10.1074/jbc.RA119.007504

The priming factor CAPS1 regulates dense-core vesicle acidification by interacting with rabconnectin3β/WDR7 in neuroendocrine cells
Cited by: 7
Author(s): Ellen Crummy, Muralidharan Mani, John C. Thellman, Thomas F.J. Martin
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-018-29614-0

Quantitative Profiling of the Lymph Node Clearance Capacity
Cited by: 34
Author(s): Cristina C. Clement, Wei Wang, Monika Dzieciątkowska, Marco Cortese, Kirk C. Hansen, Aniuska Becerra, Sangeetha Thangaswamy, Irina Tsoy Nizamutdinova, Jee Young Moon, Lawrence J. Stern, Anatoliy A. Gashev, David C. Zawieja, Laura Santambrogio
Software Mentions: 2
Published: about 8 years ago

10.1074/jbc.RA119.010486

Moonlighting matrix metalloproteinase substrates: Enhancement of proinflammatory functions of extracellular tyrosyl-tRNA synthetase upon cleavage
Cited by: 14
Author(s): Parker G. Jobin, Nestor Solis, Yoan Machado, Peter A. Bell, K. Simran, Nam Hoon Kwon, Sung Hoon Kim, Christopher M. Overall, Georgina S. Butler
Software Mentions: 2
Published: over 6 years ago

10.3390/jpm10030083

Protein Expression Analysis of an In Vitro Murine Model of Prostate Cancer Progression: Towards Identification of High-Potential Therapeutic Targets
Cited by: 6
Author(s): Hisham F. Bahmad, Wenjing Peng, Rui Zhu, Farah Ballout, Alissar Monzer, Mohamad K. Elajami, Firas Kobeissy, Wassim Abou-Kheir, Yehia Mechref
Software Mentions: 2
Published: about 6 years ago

10.1016/j.celrep.2021.109230

Integrin intra-heterodimer affinity inversely correlates with integrin activatability
Cited by: 11
Author(s): Guangyu Sun, Emilie Guillon, Scott A. Holley
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA119.012517

Phosphorylation of the overlooked tyrosine 310 regulates the structure, aggregation, and microtubule- and lipid-binding properties of Tau
Cited by: 27
Author(s): Nadine Ait-Bouziad, Anass Chiki, Galina Limorenko, Shifeng Xiao, David Eliezer, Hilal A. Lashuel
Software Mentions: 2
Published: over 6 years ago

10.3390/cells9061423

Chromatin Trapping of Factors Involved in DNA Replication and Repair Underlies Heat-Induced Radio- and Chemosensitization
Cited by: 3
Author(s): Artem V. Luzhin, Bogdan Avanesyan, Artem K. Velichko, Victoria О. Shender, Natalia Ovsyannikova, Georgij Arapidi, Polina V. Shnaider, Nadezhda V. Petrova, Igor I. Kireev, Sergey V. Razin, Omar L. Kantidze
Software Mentions: 2
Published: over 6 years ago

10.4172/jpb.1000384

Proteome Dynamics of the Specialist Oxalate Degrader Oxalobacter formigenes
Cited by: 13
Author(s): Mellissa L Ellis, James A. Mobley, Ross P. Holmes, John Knight
Software Mentions: 2
Published: over 10 years ago

10.3390/genes10090650

Affinity Purification of NF1 Protein–Protein Interactors Identifies Keratins and Neurofibromin Itself as Binding Partners
Cited by: 11
Author(s): Rachel M. Carnes, Robert A. Kesterson, Bruce R. Korf, James A. Mobley, Deeann Wallis
Software Mentions: 2
Published: about 7 years ago

10.3389/fnsyn.2017.00013

Activity-Dependent Phosphorylation by CaMKIIδ Alters the Ca2+ Affinity of the Multi-C2-Domain Protein Otoferlin
Cited by: 12
Author(s): Sandra Meese, A. Cepeda, Felix Gahlen, Christopher M. Adams, Ralf Ficner, Anthony J. Ricci, Stefan Heller, Ellen Reisinger, Meike Herget
Software Mentions: 2
Published: almost 9 years ago

10.3389/fbioe.2020.00882

Cell Reprogramming With CRISPR/Cas9 Based Transcriptional Regulation Systems
Cited by: 26
Author(s): K. M. Shakirova, Viktoriia Y. Ovchinnikova, Э. Б. Дашинимаев
Software Mentions: 2
Published: about 6 years ago

10.1093/database/bav056

Inconsistencies in the red blood cell membrane proteome analysis: generation of a database for research and diagnostic applications
Cited by: 24
Author(s): Tamás Hegedűs, Pururawa Mayank Chaubey, György Várady, Edit Szabó, Hajnalka Sarankó, Lia Hofstetter, Bernd Roschitzki, Bruno Stieger, Balázs Sarkadi
Software Mentions: 2
Published: about 11 years ago

10.1534/g3.115.017053

The Mosaic Mutants of Cucumber: A Method to Produce Knock-Downs of Mitochondrial Transcripts
Cited by: 9
Author(s): Angel R. Del Valle-Echevarria, Agnieszka Kiełkowska, Grzegorz Bartoszewski, Michael J. Havey
Software Mentions: 2
Published: over 11 years ago

10.1098/rsob.170024

SUMOylation pathway alteration coupled with downregulation of SUMO E2 enzyme at mucosal epithelium modulates inflammation in inflammatory bowel disease
Cited by: 32
Author(s): Salman Ahmad Mustfa, Mukesh Kumar Singh, Aamir Suhail, Gayatree Mohapatra, Smriti Verma, Debangana Chakravorty, Sarika Rana, Ritika Rampal, Atika Dhar, Sudipto Saha, Vineet Ahuja, Chittur V. Srikanth
Software Mentions: 2
Published: over 9 years ago

10.1515/biol-2019-0070

RHOA and mDia1 promotes apoptosis of breast cancer cells via a high dose of doxorubicin treatment
Cited by: 12
Author(s): Peter Bober, Michal Alexovič, Zuzana Tomková, R Kilík, Ján Sabó
Software Mentions: 2
Published: over 6 years ago

10.1002/2211-5463.12997

Cystatin C regulates the cytotoxicity of infection‐induced endothelial‐derived β‐amyloid
Cited by: 2
Author(s): Ron Balczon, K. Adam Morrow, Silas J. Leavesley, C.M. Francis, T. Stevens, Ezinne Agwaramgbo, Christopher Williams, R.P. Stevens, Geri Langham, S.B. Voth, Eugene A. Cioffi, Susan E Weintraub, Troy Stevens
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13023-019-1192-4

New insights on congenital pulmonary airways malformations revealed by proteomic analyses
Cited by: 9
Author(s): Constance Barazzone-Argiroffo, J. Lascano Maillard, Isabelle Vidal, Marie‐Luce Bochaton‐Piallat, Sanja Blaskovic, Yves Donati, Barbara E. Wildhaber, Anne‐Laure Rougemont, Christophe Delacourt, Isabelle Ruchonnet-Métrailler
Software Mentions: 2
Published: almost 7 years ago

10.3389/fvets.2020.584948

Protein Cargo of Extracellular Vesicles From Bovine Follicular Fluid and Analysis of Their Origin From Different Ovarian Cells
Cited by: 19
Author(s): Svetlana Uzbekova, Carmen Almiñana, Valérie Labas, Ana-Paula Teixeira-Gomes, Lucie Combes‐Soia, Guillaume Tsikis, Anaïs Vitorino Carvalho, Rustem Uzbekov, Г. Н. Сингина
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13059-016-0951-y

OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees
Cited by: 65
Author(s): Song Gao, Denis Bertrand, Burton K. Chia, Niranjan Nagarajan
Software Mentions: 2
Published: over 10 years ago

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