pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.3389/fneur.2018.00465

Environmental Enrichment Upregulates Striatal Synaptic Vesicle-Associated Proteins and Improves Motor Function
Cited by: 6
Author(s): Suk Young Song, Minji Chae, Ji Hea Yu, Min Young Lee, Soonil Pyo, Yeseul Shin, Ahreum Baek, Jung Won Park, Eun Sook Park, Ja Young Choi, Sung Rae Cho
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2020.01227

Impact of Different Trace Elements on the Growth and Proteome of Two Strains of Granulicella, Class “Acidobacteriia”
Cited by: 14
Author(s): Ohana Y.A. Costa, Chidinma Oguejiofor, Daniela Zühlke, Cristine Chaves Barreto, Christine Wünsche, Katharina Riedel, Eiko E. Kuramae
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2164-9-595

Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species
Cited by: 53
Author(s): Hernán Lorenzi, Mathangi Thiagarajan, Brian J. Haas, Jennifer Wortman, Neil Hall, Elisabet Caler
Software Mentions: 2
Published: almost 18 years ago

10.3389/fnut.2020.583397

Bifidobacterium infantis Metabolizes 2′Fucosyllactose-Derived and Free Fucose Through a Common Catabolic Pathway Resulting in 1,2-Propanediol Secretion
Cited by: 18
Author(s): Liv R Dedon, Ezgi Özcan, Asha Rani, David A. Sela
Software Mentions: 2
Published: almost 6 years ago

10.3389/fphys.2017.00793

Integrative Temporo-Spatial, Mineralogic, Spectroscopic, and Proteomic Analysis of Postnatal Enamel Development in Teeth with Limited Growth
Cited by: 8
Author(s): Mirali Pandya, Hui Liu, Smit Dangaria, Weiying Zhu, Leo L. Li, Shuang Pan, Moufida Abufarwa, Roderick G. Davis, Stephen Guggenheim, Timothy A. Keiderling, Xianghong Luan, Thomas G.H. Diekwisch
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2020.613571

Signal Recognition Particle RNA Contributes to Oxidative Stress Response in Deinococcus radiodurans by Modulating Catalase Localization
Cited by: 9
Author(s): Richou Han, Jaden Fang, Jessie Jiang, Elena K. Gaidamakova, Rok Tkavc, Michael J. Daly, Lydia M. Contreras
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2014.00259

Interactions of proteins with biogenic iron oxyhydroxides and a new culturing technique to increase biomass yields of neutrophilic, iron-oxidizing bacteria
Cited by: 4
Author(s): Roman A. Barco, Katrina J. Edwards
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2019.02708

Vesicles From Vibrio cholerae Contain AT-Rich DNA and Shorter mRNAs That Do Not Correlate With Their Protein Products
Cited by: 15
Author(s): Petter Langlete, Anders K. Krabberød, Hanne C. Winther‐Larsen
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2014.00432

Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens
Cited by: 16
Author(s): Elena Dalla Vecchia, Paul Shao, Elena I. Suvorova, Diego Chiappe, Romain Hamelin, Rizlan Bernier‐Latmani
Software Mentions: 2
Published: about 12 years ago

10.7717/peerj.506

Human hair shaft proteomic profiling: individual differences, site specificity and cuticle analysis
Cited by: 48
Author(s): Chelsea Nicole Laatsch, Blythe Durbin‐Johnson, David M. Rocke, Sophie Mukwana, Abby B. Newland, Michael J. Flagler, Michael Davis, Richard A. Eigenheer, Brett S. Phinney, Robert H. Rice
Software Mentions: 2
Published: about 12 years ago

10.1007/s00401-021-02285-4

Age-associated insolubility of parkin in human midbrain is linked to redox balance and sequestration of reactive dopamine metabolites
Cited by: 26
Author(s): Jacqueline M. Tokarew, Daniel N. El-Kodsi, Nathalie A. Lengacher, Travis K. Fehr, Antoinette Nguyen, Bojan Shutinoski, Brian O’Nuallain, Ming Jin, Jasmine Khan, Andy Cheuk-Him Ng, Juan Li, Quan Jiang, Mei Zhang, Liqun Wang, Rajib Sengupta, Kathryn R. Barber, An Tran, Doo Soon Im, Steve Callaghan, David Park, Stéphanie Zandee, Xiajun Dong, Clemens R. Scherzer, Alexandre Prat, Eve C. Tsai, Masashi Takanashi, Nobutaka Hattori, Jennifer A. Chan, Luigi Zecca, Andrew B. West, Arne Holmgren, Lawrence G. Puente, Gary S. Shaw, Gergely Tóth, John Woulfe, Peggy Taylor, Julianna J. Tomlinson, Michael G. Schlossmacher
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2017.01772

Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling
Cited by: 21
Author(s): Sergio Triana, Hans de Cock, Robin A. Ohm, Giovanna Danies, Han A. B. Wösten, Silvia Restrepo, Andrés Fernando González Barrios, Adriana Celis
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2018.00755

The Membrane-Bound C Subunit of Reductive Dehalogenases: Topology Analysis and Reconstitution of the FMN-Binding Domain of PceC
Cited by: 19
Author(s): Géraldine Florence Buttet, Mathilde Stéphanie Willemin, Romain Hamelin, Aamani Rupakula, Julien Maillard
Software Mentions: 2
Published: over 8 years ago

10.3389/fpls.2019.01657

A LysR-Type Transcriptional Regulator LcrX Is Involved in Virulence, Biofilm Formation, Swimming Motility, Siderophore Secretion, and Growth in Sugar Sources in Xanthomonas axonopodis Pv. glycines
Cited by: 14
Author(s): Hanbi Park, Eunsoo Do, Minyoung Kim, Hye-Jee Park, Jong-Chan Lee, Sang-Wook Han
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-021-92931-4

Overlapping regions of Caf20 mediate its interactions with the mRNA-5′cap-binding protein eIF4E and with ribosomes
Cited by: 4
Author(s): Ebelechukwu C. Nwokoye, Eiman AlNaseem, Robert A. Crawford, Lydia M. Castelli, Martin D. Jennings, Christopher J. Kershaw, Graham D. Pavitt
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2012.00393

Current Approaches on Viral Infection: Proteomics and Functional Validations
Cited by: 7
Author(s): Jie Zheng, Boon Huan Tan, Richard J. Sugrue, Kai Tang
Software Mentions: 2
Published: over 14 years ago

10.3389/fmicb.2019.00330

Transcriptional and Proteomic Choreography Under Phosphorus Deficiency and Re-supply in the N2 Fixing Cyanobacterium Trichodesmium erythraeum
Cited by: 11
Author(s): Kyle R. Frischkorn, Sheean T. Haley, Sonya T. Dyhrman
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2018.01397

The Role of Mass Spectrometry in Structural Studies of Flavin-Based Electron Bifurcating Enzymes
Cited by: 8
Author(s): Monika Tokmina‐Lukaszewska, Angela Patterson, Luke Berry, Liam W. Scott, Narayanaganesh Balasubramanian, Brian Bothner
Software Mentions: 2
Published: about 8 years ago

10.3389/fimmu.2021.621744

In Vitro Culture Expansion Shifts the Immune Phenotype of Human Adipose-Derived Mesenchymal Stem Cells
Cited by: 25
Author(s): Richard Jeske, Xuegang Yuan, Qin Fu, Bruce A. Bunnell, Timothy M. Logan, Yan Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2014.00067

Pancreatic Cancer Cells Isolated from Muc1-Null Tumors Favor the Generation of a Mature Less Suppressive MDSC Population
Cited by: 11
Author(s): Amritha Kidiyoor, Jorge Schettini, Dahlia M. Besmer, Stephen L. Rego, Sritama Nath, Jennifer M. Curry, Lopamudra Das Roy, Didier Dréau, Pinku Mukherjee
Software Mentions: 2
Published: over 12 years ago

10.3389/fimmu.2017.00358

Human Melanoma-Derived Extracellular Vesicles Regulate Dendritic Cell Maturation
Cited by: 44
Author(s): Rachel L.G. Maus, James W. Jakub, Wendy K. Nevala, Trace Christensen, Klara E. Noble-Orcutt, Zohar Sachs, Tina J. Hieken, Svetomir N. Markovic
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2020.00448

Combination Analysis of Metatranscriptome and Metagenome Reveal the Composition and Functional Response of Coral Symbionts to Bleaching During an El Niño Event
Cited by: 9
Author(s): Fu-Lin Sun, Hongqiang Yang, Guan Wang, Quan Shi
Software Mentions: 2
Published: over 6 years ago

10.3389/fcimb.2021.724569

An Innovative Protocol for Metaproteomic Analyses of Microbial Pathogens in Cystic Fibrosis Sputum
Cited by: 6
Author(s): Alexander C. Graf, Johanna Striesow, Jan Pané‐Farré, Thomas Sura, Martina Wurster, Michael Lalk, Dietmar H. Pieper, Dörte Becher, Barbara C. Kahl, Katharina Riedel
Software Mentions: 2
Published: about 5 years ago

10.1002/1878-0261.12152

Dabrafenib inhibits the growth of <i>BRAF‐WT</i> cancers through CDK16 and NEK9 inhibition
Cited by: 26
Author(s): Manali S. Phadke, Lily Rix, Inna Smalley, Annamarie T. Bryant, Yunting Luo, Harshani R. Lawrence, Braydon Schaible, Yian Ann Chen, Uwe Rix, Keiran S.M. Smalley
Software Mentions: 2
Published: almost 9 years ago

10.3389/fcell.2020.616706

Identification of the Myogenetic Oligodeoxynucleotides (myoDNs) That Promote Differentiation of Skeletal Muscle Myoblasts by Targeting Nucleolin
Cited by: 11
Author(s): Sayaka Shinji, Koji Umezawa, Yuma Nihashi, Shun‐ichi Nakamura, Takeshi Shimosato, Tomohide Takaya
Software Mentions: 2
Published: over 5 years ago

10.1038/s41419-021-03589-9

Non-canonical role of wild-type SEC23B in the cellular stress response pathway
Cited by: 3
Author(s): Lamis Yehia, Darren Liu, Shuai Fu, Pranav Iyer, Charis Eng
Software Mentions: 2
Published: over 5 years ago

10.1002/minf.201200030

SARConnect: A Tool to Interrogate the Connectivity Between Proteins, Chemical Structures and Activity Data
Cited by: 9
Author(s): Mats Eriksson, Ingrid Nilsson, Thierry Kogej, Christopher Southan, Martin Johansson, Christian Tyrchan, Sorel Mureşan, Niklas Blomberg, Marcus Bjäreland
Software Mentions: 2
Published: about 14 years ago

10.1038/s41419-018-0423-2

A multi-omic analysis reveals the role of fumarate in regulating the virulence of enterohemorrhagic Escherichia coli
Cited by: 20
Author(s): Chengi Kuo, Sin Tian Wang, Chia Mei Lin, Hao-Chieh Chiu, Cheng Huang, Der Yen Lee, Geen Dong Chang, Tse‐Chuan Chou, Jenn Wei Chen, Chang Shi Chen
Software Mentions: 2
Published: over 8 years ago

10.3389/fcell.2020.00700

Tubular ER Associates With Diacylglycerol-Rich Structures During Lipid Droplet Consumption
Cited by: 4
Author(s): Suriakarthiga Ganesan, Marjan Tavassoli, Brittney Shabits, Vanina Zaremberg
Software Mentions: 2
Published: about 6 years ago

10.3389/fevo.2019.00085

Alternative Transcription at Venom Genes and Its Role as a Complementary Mechanism for the Generation of Venom Complexity in the Common House Spider
Cited by: 13
Author(s): Robert A. Haney, Taylor Matte, FitzAnthony S. Forsyth, Jessica E. Garb
Software Mentions: 2
Published: over 7 years ago

10.1186/s12964-018-0257-7

Kv1.3 channel blockade with the Vm24 scorpion toxin attenuates the CD4+ effector memory T cell response to TCR stimulation
Cited by: 19
Author(s): José Ignacio Veytia-Bucheli, Juana María Jiménez-Vargas, Erika Melchy-Pérez, Monserrat Alba Sandoval-Hernández, Lourival D. Possani, Yvonne Rosenstein
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-020-07326-y

Complementary transcriptomic and proteomic analyses reveal the cellular and molecular processes that drive growth and development of Fasciola hepatica in the host liver
Cited by: 25
Author(s): Krystyna Cwiklinski, Mark W. Robinson, Sheila Donnelly, John P. Dalton
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13143618

TRAF6 Phosphorylation Prevents Its Autophagic Degradation and Re-Shapes LPS-Triggered Signaling Networks
Cited by: 3
Author(s): Julia Busch, Rita Moreno, Laureano de la Vega, Vera V. Saul, Susanne Bacher, Felix von Zweydorf, Marius Ueffing, Axel Weber, Christian Johannes Gloeckner, Uwe Linne, Michael Kracht, M. Lienhard Schmitz
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0221669

Cholinergic-like neurons carrying PSEN1 E280A mutation from familial Alzheimer’s disease reveal intraneuronal sAPPβ fragments accumulation, hyperphosphorylation of TAU, oxidative stress, apoptosis and Ca2+ dysregulation: Therapeutic implications
Cited by: 16
Author(s): Viviana Soto-Mercado, Miguel Mendivil-Perez, Carlos Vélez-Pardo, Francisco Lopera, Marlene Jiménez-Del-Río
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0115213

Microtubule-Dependent Modulation of Adhesion Complex Composition
Cited by: 37
Author(s): Daniel Ng, Jonathan D. Humphries, Adam Byron, Angélique Millon‐Frémillon
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0140650

Sperm Proteome Maturation in the Mouse Epididymis
Cited by: 83
Author(s): Sheri Skerget, Matthew Rosenow, Konstantinos Pétritis, Timothy L. Karr
Software Mentions: 2
Published: almost 11 years ago

10.1186/s12964-016-0133-2

The arabidopsis cyclic nucleotide interactome
Cited by: 34
Author(s): Lara Donaldson, Stuart Meier, Chris Gehring
Software Mentions: 2
Published: over 10 years ago

10.1186/s12864-016-3408-5

Shotgun proteomics of the barley seed proteome
Cited by: 51
Author(s): Ramamurthy Mahalingam
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0064044

Urine Proteins Identified by Two-Dimensional Differential Gel Electrophoresis Facilitate the Differential Diagnoses of Scrapie
Cited by: 9
Author(s): Lise Lamoureux, Sharon L R Simon, Margot Plews, Viola Ruddat, Simone Brunet, Catherine Graham, Stefanie Czub, J. David Knox
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0028532

Conserved BK Channel-Protein Interactions Reveal Signals Relevant to Cell Death and Survival
Cited by: 38
Author(s): Bernd Sokolowski, Sandra Orchard, Margaret Harvey, Settu Sridhar, Yoshihisa Sakai
Software Mentions: 2
Published: almost 15 years ago

10.1074/mcp.M117.068429

The mzIdentML Data Standard Version 1.2, Supporting Advances in Proteome Informatics
Cited by: 56
Author(s): Juan Antonio Vizcaíno, Gerhard Mayer, Simon Perkins, Harald Barsnes, Marc Vaudel, Yasset Perez‐Riverol, Tobias Ternent, Julian Uszkoreit, Martin Eisenacher, Lutz Fischer, Juri Rappsilber, Eugen Netz, Mathias Walzer, Oliver Kohlbacher, Alexander Leitner, Robert J. Chalkley, Fawaz Ghali, Salvador Martínez‐Bartolomé, Eric W. Deutsch, Andrew R. Jones
Software Mentions: 2
Published: about 9 years ago

10.1111/acel.12780

Oxidation resistance 1 is a novel senolytic target
Cited by: 81
Author(s): Xin Zhang, Suping Zhang, Xingui Liu, Yingying Wang, Jianhui Chang, Xuan Zhang, Samuel G. Mackintosh, Alan J. Tackett, Yonghan He, Dongwen Lv, Rémi-Martin Laberge, Judith Campisi, Jianrong Wang, Guangrong Zheng, Daohong Zhou
Software Mentions: 2
Published: over 8 years ago

10.1038/cdd.2015.22

XLS (c9orf142) is a new component of mammalian DNA double-stranded break repair
Cited by: 61
Author(s): Andrew Craxton, Joanna Somers, Deeksha Munnur, Rebekah Jukes-Jones, Kelvin Cain, Michal Malewicz
Software Mentions: 2
Published: over 11 years ago

10.1074/mcp.RA118.001193

Proteomics Analysis of Extracellular Matrix Remodeling During Zebrafish Heart Regeneration
Cited by: 45
Author(s): Anna Garcia-Puig, José Luis Mosquera, Senda Jiménez‐Delgado, Cristina García-Pastor, Ignasi Jorba, Daniel Navajas, Françesc Canals, Ángel Raya
Software Mentions: 2
Published: about 7 years ago

10.1074/mcp.M115.054502

Proteomic Analysis of Rhizoctonia solani Identifies Infection-specific, Redox Associated Proteins and Insight into Adaptation to Different Plant Hosts
Cited by: 33
Author(s): Jonathan P. Anderson, James K. Hane, Thomas Stoll, Nicholas Pain, Marcus L. Hastie, Parwinder Kaur, Christine Hoogland, Jeffrey J. Gorman, Karam B. Singh
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0136362

Proteins with Intrinsically Disordered Domains Are Preferentially Recruited to Polyglutamine Aggregates
Cited by: 30
Author(s): Maggie P. Wear, Dmitry Kryndushkin, Robert N. O’Meally, Jason L. Sonnenberg, Robert N. Cole, Frank Shewmaker
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0021991

A Novel Role of Protein Tyrosine Kinase2 in Mediating Chloride Secretion in Human Airway Epithelial Cells
Cited by: 7
Author(s): Lianchun Liang, Owen M. Woodward, Zhaohui Chen, Robert J. Cotter, William B. Guggino
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0186840

Chemical crosslinking and mass spectrometry to elucidate the topology of integral membrane proteins
Cited by: 11
Author(s): Mykhaylo O. Debelyy, Patrice Waridel, Manfredo Quadroni, Roger Schneiter, Andreas Conzelmann
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0007050

Barrier-to-Autointegration Factor Proteome Reveals Chromatin-Regulatory Partners
Cited by: 93
Author(s): Rocío Montes de, Christopher J. Shoemaker, Marjan Guček, Robert N. Cole, Katherine L. Wilson
Software Mentions: 2
Published: almost 17 years ago

10.1371/journal.pone.0134014

Flux Balance Analysis with Objective Function Defined by Proteomics Data—Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine
Cited by: 21
Author(s): Daniel Montezano, Laura Meek, Rashmi Gupta, Luiz E. Bermudez, J.C.M. Bermudez
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0188105

Profiling of proteins secreted in the bovine oviduct reveals diverse functions of this luminal microenvironment
Cited by: 36
Author(s): Viju Vijayan Pillai, Darren Weber, Brett S. Phinney, Vimal Selvaraj
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0215267

Muscle fiber hypertrophy in response to 6 weeks of high-volume resistance training in trained young men is largely attributed to sarcoplasmic hypertrophy
Cited by: 52
Author(s): Cody T. Haun, Christopher G. Vann, Shelby C. Osburn, Petey W. Mumford, Paul A. Roberson, Matthew A. Romero, Carlton D. Fox, Christopher Johnson, Hailey A. Parry, Andreas N. Kavazis, Jordan R. Moon, Veera L.D. Badisa, Benjamin M. Mwashote, Victor Ibeanusi, Kaelin C. Young, Michael D. Roberts
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0119523

Experimental Study on Differences in Clivus Chordoma Bone Invasion: An iTRAQ-Based Quantitative Proteomic Analysis
Cited by: 16
Author(s): Zhen Wu, Liang Wang, Zhengguang Guo, Ke Wang, Yang Zhang, Kaibing Tian, Junting Zhang, Wei Sun, Chunmei Yu
Software Mentions: 2
Published: over 11 years ago

10.1074/mcp.M113.028589

Heterogeneity in Neutrophil Microparticles Reveals Distinct Proteome and Functional Properties
Cited by: 162
Author(s): Jesmond Dalli, Trinidad Montero‐Melendez, Lucy V. Norling, Xiaoke Yin, C. J. Hinds, Dorian O. Haskard, Manuel Mayr, Mauro Perretti
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0220568

Delineating the role of FANCA in glucose-stimulated insulin secretion in β cells through its protein interactome
Cited by: 6
Author(s): Dragana Lagundžin, Wen Feng Hu, Henry C.-H. Law, Kimiko L. Krieger, Fangfang Qiao, Emalie J. Clement, Andjela Drincic, Olgica Nedić, Michael J. Naldrett, Sophie Alvarez, Nicholas T. Woods
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0150239

Identification of Interactions in the NMD Complex Using Proximity-Dependent Biotinylation (BioID)
Cited by: 30
Author(s): Christoph Schweingruber, Paolo Soffientini, Marc‐David Ruepp, Ángela Bachi, Oliver Mühlemann
Software Mentions: 2
Published: over 10 years ago

10.3390/cancers6031464

Phosphorylation of Large T Antigen Regulates Merkel Cell Polyomavirus Replication
Cited by: 19
Author(s): José Ángel Menéndez Díaz, Xin Wang, Sabrina H. Tsang, Jing Jiao, Jianxin You
Software Mentions: 2
Published: about 12 years ago

10.1371/journal.pone.0218360

Candida utilis yeast as a functional protein source for Atlantic salmon (Salmo salar L.): Local intestinal tissue and plasma proteome responses
Cited by: 14
Author(s): Felipe Eduardo Reveco-Urzua, Mette Hofossæter, Mallikarjuna Rao Kovi, Liv Torunn Mydland, Ragnhild Ånestad, Randi Sørby, Charles McL. Press, Leidy Lagos, Margareth Øverland
Software Mentions: 2
Published: over 6 years ago

10.1186/2045-3701-3-37

Proteomic analysis of mismatch repair-mediated alkylating agent-induced DNA damage response
Cited by: 4
Author(s): Xi Chen, Yong Zhao, Guo Min Li, Lin Guo
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0121055

Scalable Production in Human Cells and Biochemical Characterization of Full-Length Normal and Mutant Huntingtin
Cited by: 36
Author(s): Bin Huang, Tanja Lucas, Claudia Kueppers, Xiaomin Dong, Maike Krause, Alexander Bepperling, Johannes Büchner, Hans Voshol, Andreas Weiss, Bertran Gerrits, Stefan Kochanek
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2164-10-348

Proteomic-based identification of maternal proteins in mature mouse oocytes
Cited by: 66
Author(s): Ping Zhang, Xiaojian Ni, Yingying Guo, Xuejiang Guo, Yufeng Wang, Zuomin Zhou, Ran Huo, Jiahao Sha
Software Mentions: 2
Published: about 17 years ago

10.1371/journal.pone.0100263

Insight into PreImplantation Factor (PIF*) Mechanism for Embryo Protection and Development: Target Oxidative Stress and Protein Misfolding (PDI and HSP) through Essential RIPK Binding Site
Cited by: 30
Author(s): Eytan R. Barnea, David M. Lubman, Yan Hui Liu, V. Absalon-Medina, Soren Hayrabedyan, Krassimira Todorova, R.O. Gilbert, Joy Guingab, Timothy J. Barder
Software Mentions: 2
Published: about 12 years ago

10.1074/mcp.RA118.000973

Development of a Gill Assay Library for Ecological Proteomics of Threespine Sticklebacks (Gasterosteus aculeatus)
Cited by: 22
Author(s): Johnathon Li, Bryn Levitan, Silvia Gómez‐Jiménez, Dietmar Kültz
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0018724

Temperature-Induced Protein Secretion by Leishmania mexicana Modulates Macrophage Signalling and Function
Cited by: 84
Author(s): Kasra Hassani, Elisabeth Antoniak, Armando Jardim, Martin Olivier
Software Mentions: 2
Published: over 15 years ago

10.1007/s00253-021-11129-w

Assembly of a Rieske non-heme iron oxygenase multicomponent system from Phenylobacterium immobile E DSM 1986 enables pyrazon cis-dihydroxylation in E. coli
Cited by: 4
Author(s): Andreas Hunold, Wendy Escobedo‐Hinojosa, Elsa Potoudis, Daniela Resende, Theresa Farr, Per‐Olof Syrén, Bernhard Hauer
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0185125

Biochemical and biomechanical properties of the pacemaking sinoatrial node extracellular matrix are distinct from contractile left ventricular matrix
Cited by: 19
Author(s): Jessica M. Gluck, Anthony W. Herren, Sergey Yechikov, Hillary K.J. Kao, Ambereen Khan, Brett S. Phinney, Nipavan Chiamvimonvat, James W. Chan, Deborah K. Lieu
Software Mentions: 2
Published: almost 9 years ago

10.1074/mcp.M115.054064

Identification of Evening Complex Associated Proteins in Arabidopsis by Affinity Purification and Mass Spectrometry
Cited by: 148
Author(s): He Huang, Sophie Alvarez, Rebecca K. Bindbeutel, Zhouxin Shen, Michael J. Naldrett, Bradley S. Evans, Steven P. Briggs, Leslie M. Hicks, Steve A. Kay, Dmitri A. Nusinow
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0004501

Two Chromogranin A-Derived Peptides Induce Calcium Entry in Human Neutrophils by Calmodulin-Regulated Calcium Independent Phospholipase A2
Cited by: 87
Author(s): Dandan Zhang, Peiman Shooshtarizadeh, Benoît‐Joseph Laventie, Didier Colin, Jean-François Chich, Jasmina Vidić, Jean de Barry, Sylvette Chasserot‐Golaz, François Delalande, Alain Van Dorsselaer, Francis Schneider, Karen B. Helle, Dominique Aunis, Gilles Prévost, Marie‐Hélène Metz‐Boutigue
Software Mentions: 2
Published: over 17 years ago

10.1038/mt.2016.112

Long Non-coding RNA BGas Regulates the Cystic Fibrosis Transmembrane Conductance Regulator
Cited by: 26
Author(s): Sheena Saayman, Amanda Ackley, Jon Burdach, Matthew Clemson, Dieter C. Gruenert, Kiyoshi Tachikawa, Pad Chivukula, Marc S. Weinberg, Kevin V. Morris
Software Mentions: 2
Published: about 10 years ago

10.3389/fimmu.2021.625649

Complement-Opsonized HIV Modulates Pathways Involved in Infection of Cervical Mucosal Tissues: A Transcriptomic and Proteomic Study
Cited by: 2
Author(s): Cecilia Svanberg, Rada Ellegård, Elisa Crisci, Mohammad Khalid, Ninnie Borendal Wodlin, Maria Svenvik, Sofia Nyström, Kenzie Birse, Adam Burgener, Esaki M. Shankar, Marie Larsson
Software Mentions: 2
Published: over 5 years ago

10.1016/j.molcel.2012.05.004

A Death Effector Domain Chain DISC Model Reveals a Crucial Role for Caspase-8 Chain Assembly in Mediating Apoptotic Cell Death
Cited by: 267
Author(s): Laura S. Dickens, Robert S. Boyd, Rebekah Jukes-Jones, Michelle A. Hughes, Gemma L. Robinson, Louise Fairall, John W. R. Schwabe, Kelvin Cain, Marion MacFarlane
Software Mentions: 2
Published: about 14 years ago

10.1186/s12917-014-0251-2

Purification of protein C from canine plasma
Cited by: 1
Author(s): Valerie M. Wong, Dorothee Bienzle, Michael Hayes, Paul Taylor, Richard D. Wood
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmed.2017.00080

Assessment of Circulating Protein Signatures for Kidney Transplantation in Pediatric Recipients
Cited by: 9
Author(s): Tara K. Sigdel, Minnie M. Sarwal
Software Mentions: 2
Published: over 9 years ago

10.1007/s00401-018-1806-2

T lymphocytes facilitate brain metastasis of breast cancer by inducing Guanylate-Binding Protein 1 expression
Cited by: 52
Author(s): Dana A. M. Mustafa, Rute M S M Pedrosa, Marcel Smid, Marcel van der Weiden, Vanja de Weerd, Alex L. Nigg, Cor Berrevoets, Lona Zeneyedpour, Neibla Priego, Manuel Valiente, Theo M. Luider, Reno Debets, John W.M. Martens, John A. Foekens, Anieta M. Sieuwerts, Johan M. Kros
Software Mentions: 2
Published: over 8 years ago

10.3390/antiox8120605

The Disulfide Stress Response and Protein S-thioallylation Caused by Allicin and Diallyl Polysulfanes in Bacillus subtilis as Revealed by Transcriptomics and Proteomics
Cited by: 21
Author(s): Bui Khanh, Nguyen Thi Thu Huyen, Vu Van Loi, Martin C. H. Gruhlke, Marc Schaffer, Ulrike Mäder, Sandra Maaß, Dörte Becher, Jörg Bernhardt, Miriam Arbach, Chris J. Hamilton, Alan Slusarenko, Haike Antelmann
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0208352

Characterization of longitudinal canal tissue in the acorn barnacle Amphibalanus amphitrite
Cited by: 8
Author(s): Chenyue Wang, Janna N. Schultzhaus, Chris R. Taitt, Dagmar H. Leary, Lisa C. Shriver‐Lake, Daniel A. Snellings, Samantha L Sturiale, Stella H. North, Beatriz Orihuela, Daniel Rittschof, Kathryn J. Wahl, Christopher M. Spillmann
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0040695

Integrated Metabolo-Proteomic Approach to Decipher the Mechanisms by Which Wheat QTL (Fhb1) Contributes to Resistance against Fusarium graminearum
Cited by: 212
Author(s): Raghavendra Gunnaiah, Ajjamada C. Kushalappa, Raj Duggavathi, S. L. Fox, Daryl J. Somers
Software Mentions: 2
Published: about 14 years ago

10.3389/fmicb.2018.01316

A Bcl-2 Associated Athanogene (bagA) Modulates Sexual Development and Secondary Metabolism in the Filamentous Fungus Aspergillus nidulans
Cited by: 4
Author(s): Sachin Jain, Philipp Wiemann, Elizabeth Thill, Brett Williams, Nancy P. Keller, Mehdi Kabbage
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0018497

A Mighty Small Heart: The Cardiac Proteome of Adult Drosophila melanogaster
Cited by: 81
Author(s): Anthony Cammarato, Christian H. Ahrens, Nakissa N. Alayari, Ermir Qeli, Jasma Rucker, Mary C. Reedy, Christian M. Zmasek, Marjan Guček, Robert N. Cole, Jennifer E. Van Eyk, Rolf Bodmer, Brian O’Rourke, Sanford I. Bernstein, D. Brian Foster
Software Mentions: 2
Published: over 15 years ago

10.1371/journal.pone.0228134

Proteomic profiling of proteins in the dorsal horn of the spinal cord in dairy cows with chronic lameness
Cited by: 2
Author(s): Daniel Herzberg, Pablo Strobel, Heine Yacob Müller, Constanza Meneses, Mads Werner, Hedie Bustamante
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0156543

A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site
Cited by: 11
Author(s): Erin Becker, Andrew I. Yao, Phillip Seitzer, Tobias Kind, Ting Wang, Rich Eigenheer, Katie S. Y. Shao, Vladimir Yarov‐Yarovoy, Marc T. Facciotti
Software Mentions: 2
Published: about 10 years ago

10.3389/fmicb.2017.02586

Abundance of Secreted Proteins of Trichoderma reesei Is Regulated by Light of Different Intensities
Cited by: 25
Author(s): Eva Stappler, Jonathan D. Walton, Sabrina Beier, Monika Schmoll
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0015004

Aptamer-Based Multiplexed Proteomic Technology for Biomarker Discovery
Cited by: 1,153
Author(s): Larry Gold, Deborah Ayers, Jennifer Bertino, C. Bock, Ashley Bock, Edward N. Brody, Jeff Carter, Andrew B. Dalby, Bruce E. Eaton, Tim Fitzwater, Dylan Flather, Ashley Forbes, Trudi Foreman, Cate Fowler, Bharat Gawande, Meredith Goss, Magda Gunn, Shashi Gupta, Dennis Halladay, Jim Heil, Joe Heilig, Brian J. Hicke, Gregory M. Husar, Nebojša Janjić, Thale C. Jarvis, Susan D. Jennings, Evaldas Katilius, Tracy R. Keeney, Nancy Kim, Tad H. Koch, Stephan Kräemer, Luke Kroiss, Ngan Le, Daniel M. Levine, Wes Lindsey, Bridget Lollo, Wes Mayfield, Mike Mehan, Robert Mehler, Sally K. Nelson, Michele Nelson, Dan Nieuwlandt, Malti Nikrad, Urs A. Ochsner, Rachel Ostroff, Matt Otis, Thomas S. Parker, Steve Pietrasiewicz, Daniel I. Resnicow, John C. Rohloff, Glenn M. Sanders, Sarah Sattin, Daniel J. Schneider, Britta Swebilius Singer, Martin Stanton, Alana Sterkel, A. Keith Stewart, Suzanne Stratford, Jonathan D. Vaught, Mike Vrkljan, Jeffrey J. Walker, Mike Watrobka, Sheela Waugh, Allison Weiss, Sheri K. Wilcox, Alexey D. Wolfson, Steven K. Wolk, Chi Zhang, Dom Zichi
Software Mentions: 2
Published: almost 16 years ago

10.1371/journal.pone.0026542

A Metaproteomic Approach to Study Human-Microbial Ecosystems at the Mucosal Luminal Interface
Cited by: 73
Author(s): Xiaoxiao Li, James F. LeBlanc, Amy Truong, Ravi Vuthoori, Sharon S. Chen, Jonathan L. Lustgarten, Bennett E. Roth, Jeff Allard, Andrew Ippoliti, Laura L. Presley, James Borneman, William L. Bigbee, Vanathi Gopalakrishnan, Thomas G. Graeber, David Elashoff, Jonathan Braun, Lee Goodglick
Software Mentions: 2
Published: almost 15 years ago

10.3389/fmicb.2019.00384

Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”
Cited by: 14
Author(s): Samuel M. Luedin, Nicola Storelli, Francesco Danza, Samuele Roman, Matthias Wittwer, Joël F. Pothier, Mauro Tonolla
Software Mentions: 2
Published: over 7 years ago

10.1042/BJ20130579

Nogo-A couples with Apg-1 through interaction and co-ordinate expression under hypoxic and oxidative stress
Cited by: 13
Author(s): Florian Kern, Ruslan I. Stanika, Bettina Sarg, Martin Offterdinger, Daniel Heß, Gerald J. Obermair, Herbert Lindner, Christine E. Bandtlow, Ludger Hengst, Rüdiger Schweigreiter
Software Mentions: 2
Published: almost 13 years ago

10.3389/fnmol.2018.00243

Use of Proteomic Imaging Coupled With Transcriptomic Analysis to Identify Biomolecules Responsive to Cochlear Injury
Cited by: 2
Author(s): Kenyaria V. Noble, Michelle L. Reyzer, Jeremy L. Barth, Hayes McDonald, Michael Tuck, Kevin L. Schey, Edward L. Krug, Hainan Lang
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0190836

Comparison of genomes and proteomes of four whole genome-sequenced Campylobacter jejuni from different phylogenetic backgrounds
Cited by: 7
Author(s): Clifford G. Clark, Chih-Yu Chen, Chrystal Berry, Matthew Walker, Stuart McCorrister, Patrick Chong, Garrett Westmacott
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0037034

Comparative Proteomic Analysis of Aedes aegypti Larval Midgut after Intoxication with Cry11Aa Toxin from Bacillus thuringiensis
Cited by: 48
Author(s): Angeles Cancino-Rodezno, Luis Lozano, Cris Oppert, Julieta Ivonne Castro, Humberto Lánz-Mendoza, Sergio Encarnación, Amy Evans, Sarjeet S. Gill, Mário Soberón, Juan Luís Jurat-Fuentes, Alejandra Bravo
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0124473

Comprehensive Evaluation of Toxoplasma gondii VEG and Neospora caninum LIV Genomes with Tachyzoite Stage Transcriptome and Proteome Defines Novel Transcript Features
Cited by: 29
Author(s): Abhinay Ramaprasad, Tobias Mourier, Raeece Naeem, Tareq B. Malas, Ehab M. Moussa, Aswini K. Panigrahi, Sarah J. Vermont, Thomas D. Otto, Jonathan M. Wastling, Arnab Pain
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0027811

Radiation–Induced Signaling Results in Mitochondrial Impairment in Mouse Heart at 4 Weeks after Exposure to X-Rays
Cited by: 130
Author(s): Žarko Barjaktarović, Dominik Schmaltz, Alena Shyla, Omid Azimzadeh, Sabine Schulz, Julia Haagen, Wolfgang Dörr, Hakan Sarioglu, Alexander Schäfer, Michael J. Atkinson, Hans Zischka, Soile Tapio
Software Mentions: 2
Published: almost 15 years ago

10.1186/1476-4598-12-62

Biochemical and biological characterization of exosomes containing prominin-1/CD133
Cited by: 90
Author(s): Germana Rappa, Javier Mercapide, Fabio Anzanello, R. Marshall Pope, Aurelio Lorico
Software Mentions: 2
Published: over 13 years ago

10.1186/1756-6606-4-28

Impairment of adult hippocampal neural progenitor proliferation by methamphetamine: role for nitrotyrosination
Cited by: 49
Author(s): Arun Venkatesan, Lerna Uzasci, Zhaohui Chen, Labchan Rajbhandari, Carol Anderson, Myoung Hwa Lee, M.A. Bianchet, Robert J. Cotter, Hongjun Song, Avindra Nath
Software Mentions: 2
Published: over 15 years ago

10.1016/j.bbapap.2013.04.004

A tutorial for software development in quantitative proteomics using PSI standard formats
Cited by: 5
Author(s): Faviel F. Gonzalez-Galarza, Da Qi, Jun Fan, Conrad Bessant, Andrew R. Jones
Software Mentions: 2
Published: over 12 years ago

10.3390/v13040675

Epstein-Barr Virus LMP1 Modulates the CD63 Interactome
Cited by: 9
Author(s): Mujeeb R. Cheerathodi, Dingani Nkosi, Allaura S. Cone, Sara B. York, David G. Meckes
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0064621

Transcriptome and Proteome Data Reveal Candidate Genes for Pollinator Attraction in Sexually Deceptive Orchids
Cited by: 44
Author(s): Khalid E. M. Sedeek, Weihong Qi, Monica A. Schauer, Alok Gupta, Lucy Poveda, Shuqing Xu, Zhong‐Jian Liu, Ueli Grossniklaus, Florian P. Schiestl, Philipp M. Schlüter
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0012671

Proteome-Wide Search Reveals Unexpected RNA-Binding Proteins in Saccharomyces cerevisiae
Cited by: 150
Author(s): Nikoleta G. Tsvetanova, Daniel M. Klass, Julia Salzman, Patrick O. Brown
Software Mentions: 2
Published: about 16 years ago

10.1371/journal.pone.0080737

PRICKLE1 Interaction with SYNAPSIN I Reveals a Role in Autism Spectrum Disorders
Cited by: 37
Author(s): Lily Paemka, Vinit B. Mahajan, Jessica M. Skeie, Levi P. Sowers, Salleh N. Ehaideb, Pedro González-Alegre, Toshikuni Sasaoka, Hirotaka Tao, Asuka Miyagi, Naoto Ueno, Keizo Takao, Tsuyoshi Miyakawa, Shu Wu, Benjamin W. Darbro, Polly J. Ferguson, Andrew A. Pieper, Jeremiah K. Britt, John A. Wemmie, Danielle S. Rudd, Thomas H. Wassink, Hatem El‐Shanti, Heather C Mefford, Gemma L. Carvill, J. Robert Manak, Alexander G. Bassuk
Software Mentions: 2
Published: almost 13 years ago

10.12688/wellcomeopenres.16072.1

Global proteomic analysis of insulin receptor interactors in glomerular podocytes
Cited by: 1
Author(s): Salman Hosawi, Jonathan D. Humphries, Richard J M Coward, David Knight, Rachel Lennon
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0094166

Biochemical Properties and Atomic Resolution Structure of a Proteolytically Processed β-Mannanase from Cellulolytic Streptomyces sp. SirexAA-E
Cited by: 16
Author(s): Taichi E. Takasuka, Justin Acheson, C.M. Bianchetti, Ben M. Prom, Lai F. Bergeman, Adam J. Book, Cameron R. Currie, Brian G. Fox
Software Mentions: 2
Published: over 12 years ago

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Papers Mentioning Scaffold 1,866