pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1038/srep39024

Comparative Proteomics Reveals that Phosphorylation of β Carbonic Anhydrase 1 Might be Important for Adaptation to Drought Stress in Brassica napus
Cited by: 31
Author(s): Limin Wang, Xiang Jin, Qingbin Li, Xuchu Wang, Zaiyun Li, Xiaoming Wu
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep34209

Novel highly divergent reassortant bat rotaviruses in Cameroon, without evidence of zoonosis
Cited by: 43
Author(s): Claude Kwe Yinda, Mark Zeller, Nádia Conceição-Neto, Piet Maes, Ward Deboutte, Leen Beller, Elisabeth Heylen, Stephen Mbigha Ghogomu, Marc Van Ranst, Jelle Matthijnssens
Software Mentions: 2
Published: about 9 years ago

10.1038/srep37643

Nucleoside-Diphosphate-Kinase of P. gingivalis is Secreted from Epithelial Cells In the Absence of a Leader Sequence Through a Pannexin-1 Interactome
Cited by: 25
Author(s): Kalina R. Atanasova, Jungnam Lee, JoAnn S. Roberts, Kyulim Lee, David M. Ojcius, Özlem Yılmaz
Software Mentions: 2
Published: almost 9 years ago

10.1038/srep46239

Little Cigars are More Toxic than Cigarettes and Uniquely Change the Airway Gene and Protein Expression
Cited by: 25
Author(s): Arunava Ghosh, Sabri Abdelwahab, Steven L. Reeber, Boris Reidel, Abigail J. Marklew, Andrew J. Garrison, Shernita Lee, Hong Dang, Amy H. Herring, Gary L. Glish, Mehmet Kesımer, Robert Tarran
Software Mentions: 2
Published: over 8 years ago

10.1038/srep29417

Identification of cyclins A1, E1 and vimentin as downstream targets of heme oxygenase-1 in vascular endothelial growth factor-mediated angiogenesis
Cited by: 16
Author(s): Andrea S. Bauer, Hayley Mylroie, Clare Thornton, Damien Calay, Graeme M. Birdsey, Allan Kiprianos, Garrick K. Wilson, Miguel P. Soares, Xiaoke Yin, Manuel Mayr, Anna M. Randi, Justin C. Mason
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-015-2262-1

Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea
Cited by: 13
Author(s): Kondethimmanahalli H. Chandramouli, Sarah Al-Aqeel, Taewoo Ryu, Huoming Zhang, Loqmane Seridi, Yanal Ghosheh, Pei‐Yuan Qian, Timothy Ravasi
Software Mentions: 2
Published: almost 10 years ago

10.1038/srep31098

The Secreted Protease PrtA Controls Cell Growth, Biofilm Formation and Pathogenicity in Xylella fastidiosa
Cited by: 36
Author(s): Hossein Gouran, Hyrum Gillespie, Rafael Nascimento, Sandeep Chakraborty, Paulo A. Zaini, Aaron Jacobson, Brett S. Phinney, David Dolan, Blythe Durbin‐Johnson, Elena S. Antonova, Steven E. Lindow, Matthew S. Mellema, Luiz Ricardo Goulart, Abhaya M. Dandekar
Software Mentions: 2
Published: about 9 years ago

10.1038/srep36699

Insights into a novel nuclear function for Fascin in the regulation of the amino-acid transporter SLC3A2
Cited by: 21
Author(s): Amine Saad, Krikor Bijian, Dinghong Qiu, Sabrina Daniela da Silva, Maud Marques, Chia-Hao Chang, Hassan Nassour, Dindial Ramotar, Sambasivarao Damaraju, John R. Mackey, Tarek A. Bismar, Michael Witcher, Moulay A. Alaoui‐Jamali
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pbio.3001136

Plant pathogens convergently evolved to counteract redundant nodes of an NLR immune receptor network
Cited by: 56
Author(s): Lida Derevnina, Mauricio P Contreras, Hiroaki Adachi, Jessica Upson, Angel Vergara Cruces, Rongrong Xie, Jan Sklenář, Frank L.H. Menke, Sam T. Mugford, Dan MacLean, Wenbo Ma, Saskia A. Hogenhout, A. Goverse, Abbas Maqbool, Chih‐Hang Wu, Sophien Kamoun
Software Mentions: 2
Published: about 4 years ago

10.1038/srep09325

Clustered Distribution of Natural Product Leads of Drugs in the Chemical Space as Influenced by the Privileged Target-Sites
Cited by: 18
Author(s): Tao Lin, Feng Zhu, Qing Chu, Cheng Zhang, Shangying Chen, Peng Zhang, Cunlong Zhang, Chunyan Tan, Chunmei Gao, Zhe Chen, Yuyang Jiang, Yu Zong Chen
Software Mentions: 2
Published: over 10 years ago

10.1186/s13321-019-0391-2

Dataset’s chemical diversity limits the generalizability of machine learning predictions
Cited by: 59
Author(s): Marta Glavatskikh, Jules Leguy, Gilles Hunault, Thomas Cauchy, Benoit Da Mota
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12859-017-1563-6

ProteoModlR for functional proteomic analysis
Cited by: 5
Author(s): Paolo Cifani, Mojdeh Shakiba, Sagar Chhangawala, Alex Kentsis
Software Mentions: 2
Published: over 8 years ago

10.1186/s13068-018-1350-2

Effects of amino acids on the lignocellulose degradation by Aspergillus fumigatus Z5: insights into performance, transcriptional, and proteomic profiles
Cited by: 19
Author(s): Jiaxi Miao, Mengmeng Wang, Lei Ma, Tuo Li, Qiwei Huang, Dongyang Liu, Qirong Shen
Software Mentions: 2
Published: almost 7 years ago

10.1186/1758-2946-5-5

Drug-likeness analysis of traditional Chinese medicines: 2. Characterization of scaffold architectures for drug-like compounds, non-drug-like compounds, and natural compounds from traditional Chinese medicines
Cited by: 23
Author(s): Sheng Tian, Youyong Li, Junmei Wang, Xiaojie Xu, Lei Xu, Xiaohong Wang, Lei Chen, Tingjun Hou
Software Mentions: 2
Published: almost 13 years ago

10.1172/JCI86924

Extracellular matrix proteomics identifies molecular signature of symptomatic carotid plaques
Cited by: 108
Author(s): Sarah R. Langley, Karin Willeit, Athanasios Didangelos, Ljubica Matic, Philipp Skroblin, Javier Barallobre-Barreiro, Mariette Lengquist, Gregor Rungger, Alexander Kapustin, Ludmilla Kedenko, Chris Molenaar, Ruifang Lu, Temo Barwari, Gonca Suna, Xiaoke Yin, Bernhard Iglseder, Bernhard Paulweber, Peter Willeit, Joseph Shalhoub, Gérard Pasterkamp, Alun H. Davies, Claudia Monaco, Ulf Hedin, Catherine M. Shanahan, Johann Willeit, Stefan Kiechl, Manuel Mayr
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-38492-z

Animal species identification in parchments by light
Cited by: 8
Author(s): Ángel Martín Fernández Alvarez, Julie Bouhy, Marc Dieu, Cathérine Charles, Olivier Deparis
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-15-S12-S2

Time-course human urine proteomics in space-flight simulation experiments
Cited by: 22
Author(s): Hans Binder, Henry Wirth, Arsen Arakelyan, Kathrin Lembcke, Evgeny S. Tiys, В. А. Иванисенко, Н. А. Колчанов, Alexey Kononikhin, Igor Popov, E. N. Nikolaev, Л. Х. Пастушкова, И. М. Ларина
Software Mentions: 2
Published: almost 11 years ago

10.1515/biol-2019-0070

RHOA and mDia1 promotes apoptosis of breast cancer cells via a high dose of doxorubicin treatment
Cited by: 12
Author(s): Peter Bober, Michal Alexovič, Zuzana Tomková, R Kilík, Ján Sabó
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA119.007504

The priming factor CAPS1 regulates dense-core vesicle acidification by interacting with rabconnectin3β/WDR7 in neuroendocrine cells
Cited by: 7
Author(s): Ellen Crummy, Muralidharan Mani, John C. Thellman, Thomas F.J. Martin
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-51485-2

Expression regulation of myo-inositol 3-phosphate synthase 1 (INO1) in determination of phytic acid accumulation in rice grain
Cited by: 10
Author(s): Ishara Perera, Ayaka Fukushima, Tatsuki Akabane, Genki Horiguchi, Saman Seneweera, Naoki Hirotsu
Software Mentions: 2
Published: about 6 years ago

10.3934/Neuroscience.2019.4.299

Brain proteomics links oxidative stress with metabolic and cellular stress response proteins in behavioural alteration of Alzheimer’s disease model rats
Cited by: 3
Author(s): Mohammad Azizur Rahman, Shahdat Hossain, Noorlidah Abdullah, Norhaniza Aminudin
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-53984-8

Integrated Transcriptomics, Proteomics, and Glycomics Reveals the Association between Up-regulation of Sialylated N-glycans/Integrin and Breast Cancer Brain Metastasis
Cited by: 21
Author(s): Wenjing Peng, Rui Zhu, Shiyue Zhou, Parvin Mirzaei, Yehia Mechref
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.M116.729806

Composition and Activity of the Non-canonical Gram-positive SecY2 Complex
Cited by: 8
Author(s): Mikaila Bandara, Robin A. Corey, Remy Martin, J. Mark Skehel, Ariel Blocker, Howard F. Jenkinson, Ian Collinson
Software Mentions: 2
Published: about 9 years ago

10.1074/jbc.RA119.010486

Moonlighting matrix metalloproteinase substrates: Enhancement of proinflammatory functions of extracellular tyrosyl-tRNA synthetase upon cleavage
Cited by: 14
Author(s): Parker G. Jobin, Nestor Solis, Yoan Machado, Peter A. Bell, K. Simran, Nam Hoon Kwon, Sung Hoon Kim, Christopher M. Overall, Georgina S. Butler
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-018-4890-8

A high-density genetic map of extra-long staple cotton (Gossypium barbadense) constructed using genotyping-by-sequencing based single nucleotide polymorphic markers and identification of fiber traits-related QTL in a recombinant inbred line population
Cited by: 24
Author(s): Fan Lü, Liping Wang, Xinyi Wang, Haiyan Zhang, Yanfei Zhu, Jiayan Guo, Wenwei Gao, Hao Geng, Quanjia Chen, Yanying Qu
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-60619-w

Rigorous characterization of urinary extracellular vesicles (uEVs) in the low centrifugation pellet - a neglected source for uEVs
Cited by: 40
Author(s): Luca Musante, Sai Vineela Bontha, Sabrina La Salvia, Angela Fernandez-Piñeros, Joanne Lannigan, Thu H. Le, Valeria R. Mas, Uta Erdbrügger
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2164-9-595

Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species
Cited by: 53
Author(s): Hernán Lorenzi, Mathangi Thiagarajan, Brian J. Haas, Jennifer Wortman, Neil Hall, Elisabet Caler
Software Mentions: 2
Published: almost 17 years ago

10.14814/phy2.12035

Clathrin complexes with the inhibitor kappa B kinase signalosome: imaging the interactome
Cited by: 5
Author(s): Fabia Gamboni, Guillermo A. Escobar, Ernest E. Moore, Monika Dzieciątkowska, Kirk C. Hansen, Sanchayita Mitra, Trevor A. Nydam, Christopher C. Silliman, Anirban Banerjee
Software Mentions: 2
Published: over 11 years ago

10.1128/IAI.00537-19

Proximity Labeling To Map Host-Pathogen Interactions at the Membrane of a Bacterium-Containing Vacuole in Chlamydia trachomatis-Infected Human Cells
Cited by: 21
Author(s): Macy G. Olson, Ray E. Widner, Lisa M. Jorgenson, Alyssa Lawrence, Dragana Lagundžin, Nicholas T. Woods, Scot P. Ouellette, Elizabeth A. Rucks
Software Mentions: 2
Published: about 6 years ago

10.1074/jbc.RA119.012517

Phosphorylation of the overlooked tyrosine 310 regulates the structure, aggregation, and microtubule- and lipid-binding properties of Tau
Cited by: 27
Author(s): Nadine Ait-Bouziad, Anass Chiki, Galina Limorenko, Shifeng Xiao, David Eliezer, Hilal A. Lashuel
Software Mentions: 2
Published: over 5 years ago

10.1038/hortres.2014.39

Dynamic changes in the date palm fruit proteome during development and ripening
Cited by: 35
Author(s): Claudius Marondedze, Chris Gehring, Ludivine Thomas
Software Mentions: 2
Published: about 11 years ago

10.1186/1471-2164-15-95

Characterization of the membrane proteome and N-glycoproteome in BV-2 mouse microglia by liquid chromatography-tandem mass spectrometry
Cited by: 17
Author(s): Dohyun Han, Seong-Yong Moon, Yikwon Kim, Hophil Min, Youngsoo Kim
Software Mentions: 2
Published: over 11 years ago

10.1007/s00726-021-03006-7

Gamma-gliadin specific celiac disease antibodies recognize p31-43 and p57-68 alpha gliadin peptides in deamidation related manner as a result of cross-reaction
Cited by: 7
Author(s): Ádám Diós, Rita Elek, Ildikò Szabó, Szilvia Horváth, Judit Gyimesi, Róbert Király, Katharina Werkstetter, Sibylle Koletzko, László Fésüs, Ilma Rita Korponay-Szabó
Software Mentions: 2
Published: over 4 years ago

10.7554/eLife.49953

Kv2.1 mediates spatial and functional coupling of L-type calcium channels and ryanodine receptors in mammalian neurons
Cited by: 55
Author(s): Nicholas C. Vierra, Michael Kirmiz, Deborah van der List, Luis Fernando Santana, James S. Trimmer
Software Mentions: 2
Published: about 6 years ago

10.1186/s13059-016-0951-y

OPERA-LG: efficient and exact scaffolding of large, repeat-rich eukaryotic genomes with performance guarantees
Cited by: 65
Author(s): Song Gao, Denis Bertrand, Burton K. Chia, Niranjan Nagarajan
Software Mentions: 2
Published: over 9 years ago

10.1038/hortres.2016.29

Relative quantification of phosphoproteomic changes in grapevine (Vitis vinifera L.) leaves in response to abscisic acid
Cited by: 14
Author(s): Supakan Rattanakan, Iniga S. George, Paul A. Haynes, Grant R. Cramer
Software Mentions: 2
Published: over 9 years ago

10.1534/genetics.119.302851

Imipridone Anticancer Compounds Ectopically Activate the ClpP Protease and Represent a New Scaffold for Antibiotic Development
Cited by: 30
Author(s): Samuel Jacques, Almer M. van der Sloot, Caroline Huard, Jasmin Coulombe-Huntington, Sarah Tsao, Sylvain Tollis, Thierry Bertomeu, Elizabeth Culp, Daniel Pallant, Michael A. Cook, Éric Bonneil, Pierre Thibault, Gerard D. Wright, Mike Tyers
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.60126

Autoregulatory control of microtubule binding in doublecortin-like kinase 1
Cited by: 14
Author(s): Regina L. Agulto, Melissa M Rogers, Tracy Tan, Amrita Ramkumar, Ashlyn M Downing, Hannah Bodin, Julia Castro, Dan W. Nowakowski, Kassandra M. Ori-McKenney
Software Mentions: 2
Published: over 4 years ago

10.1186/s13075-019-1961-4

Proteomic and histopathological characterisation of sicca subjects and primary Sjögren’s syndrome patients reveals promising tear, saliva and extracellular vesicle disease biomarkers
Cited by: 58
Author(s): Lara A. Aqrawi, Hilde Kanli Galtung, Eduarda Guerreiro, Reidun Øvstebø, Bernd Thiede, Tor Paaske Utheim, Xiangjun Chen, Øygunn Aass Utheim, Øyvind Palm, Kathrine Skarstein, Janicke Liaaen Jensen
Software Mentions: 2
Published: over 6 years ago

10.1186/gb-2012-13-2-r11

Genome-wide analysis of the maternal-to-zygotic transition in Drosophila primordial germ cells
Cited by: 54
Author(s): Najeeb U. Siddiqui, Xiao Li, Hua Luo, Angelo Karaiskakis, Huayun Hou, Thomas Kislinger, J. Timothy Westwood, Quaid Morris, Howard D. Lipshitz
Software Mentions: 2
Published: almost 14 years ago

10.1186/s12864-019-6194-z

The olfactory secretome varies according to season in female sheep and goat
Cited by: 7
Author(s): P A Cann, Malika Chabi, Aliénor Delsart, Chrystelle Le Danvic, Jean‐Michel Saliou, Manon Chasles, Matthieu Keller, Patricia Nagnan‐Le Meillour
Software Mentions: 2
Published: about 6 years ago

10.1016/j.mbplus.2020.100027

Proteomic fingerprints of damage in extracellular matrix assemblies
Cited by: 18
Author(s): Alexander Eckersley, Matiss Ozols, Ronan O’Cualain, Emma-Jayne Keevill, April Foster, Suzanne M. Pilkington, David Knight, Christopher E.M. Griffiths, Rachel Watson, Michael J. Sherratt
Software Mentions: 2
Published: almost 6 years ago

10.3389/fvets.2020.584948

Protein Cargo of Extracellular Vesicles From Bovine Follicular Fluid and Analysis of Their Origin From Different Ovarian Cells
Cited by: 19
Author(s): Svetlana Uzbekova, Carmen Almiñana, Valérie Labas, Ana-Paula Teixeira-Gomes, Lucie Combes‐Soia, Guillaume Tsikis, Anaïs Vitorino Carvalho, Rustem Uzbekov, Г. Н. Сингина
Software Mentions: 2
Published: almost 5 years ago

10.1186/1471-2407-11-368

Purine Nucleoside Phosphorylase mediated molecular chemotherapy and conventional chemotherapy: A tangible union against chemoresistant cancer
Cited by: 11
Author(s): Preetinder Singh, Swapna Joshi, Pamela J. Russell, Sham V. Nair, Aparajita Khatri
Software Mentions: 2
Published: about 14 years ago

10.1186/s12864-021-07758-0

Integrated proteomic and transcriptomic profiling identifies aberrant gene and protein expression in the sarcomere, mitochondrial complex I, and the extracellular matrix in Warmblood horses with myofibrillar myopathy
Cited by: 8
Author(s): Zoë J. Williams, Deborah Velez‐Irizarry, Keri Gardner, Stephanie J. Valberg
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-021-07678-z

ddRAD sequencing: an emerging technology added to the biosecurity toolbox for tracing the origin of brown marmorated stink bug, Halyomorpha halys (Hemiptera: Pentatomidae)
Cited by: 6
Author(s): Yan Ji, Gábor Vétek, Chandan Pal, Jinping Zhang, Rania Gmati, Qing-Hai Fan, Disna N. Gunawardana, Allan Burne, Diane Anderson, K. B. Rebijith, Sherly George, Péter Farkas, Dongmei Li
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2018.00661

Genotype-Specific Growth and Proteomic Responses of Maize Toward Salt Stress
Cited by: 20
Author(s): Ana L C Soares, Christoph‐Martin Geilfus, Sébastien Carpentier
Software Mentions: 2
Published: over 7 years ago

10.1534/g3.115.017053

The Mosaic Mutants of Cucumber: A Method to Produce Knock-Downs of Mitochondrial Transcripts
Cited by: 9
Author(s): Angel R. Del Valle-Echevarria, Agnieszka Kiełkowska, Grzegorz Bartoszewski, Michael J. Havey
Software Mentions: 2
Published: over 10 years ago

10.3389/fpls.2018.01882

Development of a Rapid in planta BioID System as a Probe for Plasma Membrane-Associated Immunity Proteins
Cited by: 37
Author(s): Brendon Conlan, Thomas Stoll, Jeffrey J. Gorman, Isabel M. L. Saur, John P. Rathjen
Software Mentions: 2
Published: almost 7 years ago

10.1186/1471-2164-15-536

Characterization and potential evolutionary impact of transposable elements in the genome of Cochliobolus heterostrophus
Cited by: 27
Author(s): Mateus Ferreira Santana, José Cleydson Ferreira da Silva, Eduardo S. G. Mizubuti, Elza Fernandes de Araújo, Bradford Condon, B. Gillian Turgeon, Marisa Vieira de Queiroz
Software Mentions: 2
Published: over 11 years ago

10.3389/fpls.2018.00818

Proteomic Profiling and Epitope Analysis of the Complex α-, γ-, and ω-Gliadin Families in a Commercial Bread Wheat
Cited by: 12
Author(s): Kyoungwon Cho, Hye-Rang Beom, You-Ran Jang, Susan B. Altenbach, William H. Vensel, Annamaria Simon-Buss, Sung-Hun Lim, Min Kim, Jong-Yeol Lee
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2019.01657

A LysR-Type Transcriptional Regulator LcrX Is Involved in Virulence, Biofilm Formation, Swimming Motility, Siderophore Secretion, and Growth in Sugar Sources in Xanthomonas axonopodis Pv. glycines
Cited by: 14
Author(s): Hanbi Park, Eunsoo Do, Minyoung Kim, Hye-Jee Park, Jong-Chan Lee, Sang-Wook Han
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12864-015-2076-1

Molt-dependent transcriptomic analysis of cement proteins in the barnacle Amphibalanus amphitrite
Cited by: 31
Author(s): Wenxu Zheng, Dagmar H. Leary, Jinny Liu, Robert E. Settlage, Kenan P. Fears, Stella H. North, Anahita Mostaghim, Tara Essock‐Burns, Sarah E. Haynes, Kathryn J. Wahl, Christopher M. Spillmann
Software Mentions: 2
Published: about 10 years ago

10.3389/fpls.2017.01134

Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode
Cited by: 13
Author(s): Fan Lin, Brad J. Williams, Padmavathi A V Thangella, Adam Ladak, Athena Schepmoes, Hernando J. Olivos, Kangmei Zhao, Stephen Callister, Laura E. Bartley
Software Mentions: 2
Published: over 8 years ago

10.3390/ijms21093155

Functional Analysis of Differentially Expressed Acetylated Spermatozoal Proteins in Infertile Men with Unilateral and Bilateral Varicocele
Cited by: 12
Author(s): Manesh Kumar Panner Selvam, Luna Samanta, Ashok Agarwal
Software Mentions: 2
Published: over 5 years ago

10.3390/ijms21165683

Complex III Inhibition-Induced Pulmonary Hypertension Affects the Mitochondrial Proteomic Landscape
Cited by: 10
Author(s): Joel James, Mathews Valuparampil Varghese, Mikhail Vasilyev, Paul Langlais, Stevan P. Tofovic, Olga Rafikova, Ruslan Rafikov
Software Mentions: 2
Published: about 5 years ago

10.3389/fpls.2017.01416

Development of an Efficient Protein Extraction Method Compatible with LC-MS/MS for Proteome Mapping in Two Australian Seagrasses Zostera muelleri and Posidonia australis
Cited by: 12
Author(s): Zhijian Jiang, Manoj Kumar, Matthew P. Padula, Mathieu Pernice, Tim Kahlke, Mikael Kim, Peter J. Ralph
Software Mentions: 2
Published: about 8 years ago

10.3390/ijms21218283

Insight into the Interactome of Intramitochondrial PKA Using Biotinylation-Proximity Labeling
Cited by: 5
Author(s): Yasmine Ould Amer, Étienne Hébert-Chatelain
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jbc.2021.100912

Cryo-EM reveals conformational flexibility in apo DNA polymerase ζ
Cited by: 4
Author(s): Chloe D. Truong, Theodore A. Craig, Gaofeng Cui, Maria Victoria Botuyan, Rachel A. Serkasevich, Kayi Y. Chan, Georges Mer, Po-Lin Chiu, Rajiv Kumar
Software Mentions: 2
Published: over 4 years ago

10.3389/fonc.2020.01784

Effects of the Oncoprotein PAX3-FOXO1 on Modulation of Exosomes Function and Protein Content: Implications on Oxidative Stress Protection and Enhanced Plasticity
Cited by: 3
Author(s): Assil Fahs, Farah Ramadan, Farah Ghamloush, Abeer J. Ayoub, Ahmad Faraz, Firas Kobeissy, Yehia Mechref, Jingkun Zhao, Rui Zhu, Nader Hussein, Raya Saab, Sandra E. Ghayad
Software Mentions: 2
Published: about 5 years ago

10.1002/mbo3.218

Characterization of the bile and gall bladder microbiota of healthy pigs
Cited by: 45
Author(s): Esther Jiménez, Borja Sánchez, Annarita Farina, Abelardo Margollés, Juan M. Rodríguez
Software Mentions: 2
Published: about 11 years ago

10.1107/S2059798315022482

Initiating heavy-atom-based phasing by multi-dimensional molecular replacement
Cited by: 3
Author(s): Bjørn Panyella Pedersen, Pontus Gourdon, Xiangyu Liu, Jesper Lykkegaard Karlsen, Poul Nissen
Software Mentions: 2
Published: over 9 years ago

10.1128/MRA.01000-20

Telomere-to-Telomere Genome Assembly of Bursaphelenchus okinawaensis Strain SH1
Cited by: 6
Author(s): Simo Sun, Ryoji Shinya, Mehmet Dayı, Akemi Yoshida, Paul W. Sternberg, Taisei Kikuchi
Software Mentions: 2
Published: about 5 years ago

10.3389/fneur.2018.00465

Environmental Enrichment Upregulates Striatal Synaptic Vesicle-Associated Proteins and Improves Motor Function
Cited by: 6
Author(s): Suk Young Song, Minji Chae, Ji Hea Yu, Min Young Lee, Soonil Pyo, Yeseul Shin, Ahreum Baek, Jung Won Park, Eun Sook Park, Ja Young Choi, Sung Rae Cho
Software Mentions: 2
Published: over 7 years ago

10.18632/oncotarget.16835

Upregulation of minichromosome maintenance complex component 3 during epithelial-to-mesenchymal transition in human prostate cancer
Cited by: 25
Author(s): Paul A. Stewart, Zahraa I. Khamis, Haiyen E. Zhau, Peng Duan, Quan‐Lin Li, Leland W.K. Chung, Qing‐Xiang Amy Sang
Software Mentions: 2
Published: over 8 years ago

10.3389/fonc.2020.557737

Down-Regulation of Collagen Hydroxylation in Colorectal Liver Metastasis
Cited by: 3
Author(s): Nick A. van Huizen, Peter C. Burgers, Joost van Rosmalen, Michail Doukas, Jan N.M. IJzermans, Theo M. Luider
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.00755

The Membrane-Bound C Subunit of Reductive Dehalogenases: Topology Analysis and Reconstitution of the FMN-Binding Domain of PceC
Cited by: 19
Author(s): Géraldine Florence Buttet, Mathilde Stéphanie Willemin, Romain Hamelin, Aamani Rupakula, Julien Maillard
Software Mentions: 2
Published: over 7 years ago

10.1186/s13071-018-2937-y

Extracellular release of virulence factor major surface protease via exosomes in Leishmania infantum promastigotes
Cited by: 26
Author(s): Skye Marshall, Patrick H. Kelly, Brajesh K. Singh, R. Marshall Pope, Peter Kim, Bayan Zhanbolat, Mary E. Wilson, Chaoqun Yao
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.00384

Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”
Cited by: 14
Author(s): Samuel M. Luedin, Nicola Storelli, Francesco Danza, Samuele Roman, Matthias Wittwer, Joël F. Pothier, Mauro Tonolla
Software Mentions: 2
Published: over 6 years ago

10.1093/bioinformatics/btaa288

HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C
Cited by: 11
Author(s): Ryo Nakabayashi, Shinichi Morishita
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-019-5750-x

Waking the sleeping dragon: gene expression profiling reveals adaptive strategies of the hibernating reptile Pogona vitticeps
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Author(s): Alexander Capraro, Denis O’Meally, Shafagh A. Waters, Hardip R. Patel, Arthur Georges, Paul D. Waters
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2014.00259

Interactions of proteins with biogenic iron oxyhydroxides and a new culturing technique to increase biomass yields of neutrophilic, iron-oxidizing bacteria
Cited by: 4
Author(s): Roman A. Barco, Katrina J. Edwards
Software Mentions: 2
Published: over 11 years ago

10.3389/fmicb.2019.02708

Vesicles From Vibrio cholerae Contain AT-Rich DNA and Shorter mRNAs That Do Not Correlate With Their Protein Products
Cited by: 15
Author(s): Petter Langlete, Anders K. Krabberød, Hanne C. Winther‐Larsen
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2017.01772

Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling
Cited by: 21
Author(s): Sergio Triana, Hans de Cock, Robin A. Ohm, Giovanna Danies, Han A. B. Wösten, Silvia Restrepo, Andrés Fernando González Barrios, Adriana Celis
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2018.01316

A Bcl-2 Associated Athanogene (bagA) Modulates Sexual Development and Secondary Metabolism in the Filamentous Fungus Aspergillus nidulans
Cited by: 4
Author(s): Sachin Jain, Philipp Wiemann, Elizabeth Thill, Brett Williams, Nancy P. Keller, Mehdi Kabbage
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2017.02586

Abundance of Secreted Proteins of Trichoderma reesei Is Regulated by Light of Different Intensities
Cited by: 25
Author(s): Eva Stappler, Jonathan D. Walton, Sabrina Beier, Monika Schmoll
Software Mentions: 2
Published: almost 8 years ago

10.3389/fphys.2015.00039

Dissection of the radical reactions linked to fetal hemoglobin reveals enhanced pseudoperoxidase activity
Cited by: 31
Author(s): Khuanpiroon Ratanasopa, Michael Brad Strader, Abdu I. Alayash, Leif Bülow
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2020.00448

Combination Analysis of Metatranscriptome and Metagenome Reveal the Composition and Functional Response of Coral Symbionts to Bleaching During an El Niño Event
Cited by: 9
Author(s): Fu-Lin Sun, Hongqiang Yang, Guan Wang, Quan Shi
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2012.00393

Current Approaches on Viral Infection: Proteomics and Functional Validations
Cited by: 7
Author(s): Jie Zheng, Boon Huan Tan, Richard J. Sugrue, Kai Tang
Software Mentions: 2
Published: almost 14 years ago

10.3389/fmicb.2018.01397

The Role of Mass Spectrometry in Structural Studies of Flavin-Based Electron Bifurcating Enzymes
Cited by: 8
Author(s): Monika Tokmina‐Lukaszewska, Angela Patterson, Luke Berry, Liam W. Scott, Narayanaganesh Balasubramanian, Brian Bothner
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2019.00330

Transcriptional and Proteomic Choreography Under Phosphorus Deficiency and Re-supply in the N2 Fixing Cyanobacterium Trichodesmium erythraeum
Cited by: 11
Author(s): Kyle R. Frischkorn, Sheean T. Haley, Sonya T. Dyhrman
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2021.621744

In Vitro Culture Expansion Shifts the Immune Phenotype of Human Adipose-Derived Mesenchymal Stem Cells
Cited by: 25
Author(s): Richard Jeske, Xuegang Yuan, Qin Fu, Bruce A. Bunnell, Timothy M. Logan, Yan Li
Software Mentions: 2
Published: over 4 years ago

10.3389/fimmu.2017.00358

Human Melanoma-Derived Extracellular Vesicles Regulate Dendritic Cell Maturation
Cited by: 44
Author(s): Rachel L.G. Maus, James W. Jakub, Wendy K. Nevala, Trace Christensen, Klara E. Noble-Orcutt, Zohar Sachs, Tina J. Hieken, Svetomir N. Markovic
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2020.00598

Elucidating the Regulon of a Fur-like Protein in Mycobacterium avium subsp. paratuberculosis (MAP)
Cited by: 6
Author(s): Fernanda Miyagaki Shoyama, Taveesak Janetanakit, John P. Bannantine, Raúl G. Barletta, Srinand Sreevatsan
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2014.00067

Pancreatic Cancer Cells Isolated from Muc1-Null Tumors Favor the Generation of a Mature Less Suppressive MDSC Population
Cited by: 11
Author(s): Amritha Kidiyoor, Jorge Schettini, Dahlia M. Besmer, Stephen L. Rego, Sritama Nath, Jennifer M. Curry, Lopamudra Das Roy, Didier Dréau, Pinku Mukherjee
Software Mentions: 2
Published: almost 12 years ago

10.3389/fcimb.2021.724569

An Innovative Protocol for Metaproteomic Analyses of Microbial Pathogens in Cystic Fibrosis Sputum
Cited by: 6
Author(s): Alexander C. Graf, Johanna Striesow, Jan Pané‐Farré, Thomas Sura, Martina Wurster, Michael Lalk, Dietmar H. Pieper, Dörte Becher, Barbara C. Kahl, Katharina Riedel
Software Mentions: 2
Published: about 4 years ago

10.3389/fimmu.2021.625649

Complement-Opsonized HIV Modulates Pathways Involved in Infection of Cervical Mucosal Tissues: A Transcriptomic and Proteomic Study
Cited by: 2
Author(s): Cecilia Svanberg, Rada Ellegård, Elisa Crisci, Mohammad Khalid, Ninnie Borendal Wodlin, Maria Svenvik, Sofia Nyström, Kenzie Birse, Adam Burgener, Esaki M. Shankar, Marie Larsson
Software Mentions: 2
Published: over 4 years ago

10.3389/fcell.2020.00700

Tubular ER Associates With Diacylglycerol-Rich Structures During Lipid Droplet Consumption
Cited by: 4
Author(s): Suriakarthiga Ganesan, Marjan Tavassoli, Brittney Shabits, Vanina Zaremberg
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2020.616706

Identification of the Myogenetic Oligodeoxynucleotides (myoDNs) That Promote Differentiation of Skeletal Muscle Myoblasts by Targeting Nucleolin
Cited by: 11
Author(s): Sayaka Shinji, Koji Umezawa, Yuma Nihashi, Shun‐ichi Nakamura, Takeshi Shimosato, Tomohide Takaya
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41419-021-03589-9

Non-canonical role of wild-type SEC23B in the cellular stress response pathway
Cited by: 3
Author(s): Lamis Yehia, Darren Liu, Shuai Fu, Pranav Iyer, Charis Eng
Software Mentions: 2
Published: over 4 years ago

10.1007/s00401-021-02285-4

Age-associated insolubility of parkin in human midbrain is linked to redox balance and sequestration of reactive dopamine metabolites
Cited by: 26
Author(s): Jacqueline M. Tokarew, Daniel N. El-Kodsi, Nathalie A. Lengacher, Travis K. Fehr, Antoinette Nguyen, Bojan Shutinoski, Brian O’Nuallain, Ming Jin, Jasmine Khan, Andy Cheuk-Him Ng, Juan Li, Quan Jiang, Mei Zhang, Liqun Wang, Rajib Sengupta, Kathryn R. Barber, An Tran, Doo Soon Im, Steve Callaghan, David Park, Stéphanie Zandee, Xiajun Dong, Clemens R. Scherzer, Alexandre Prat, Eve C. Tsai, Masashi Takanashi, Nobutaka Hattori, Jennifer A. Chan, Luigi Zecca, Andrew B. West, Arne Holmgren, Lawrence G. Puente, Gary S. Shaw, Gergely Tóth, John Woulfe, Peggy Taylor, Julianna J. Tomlinson, Michael G. Schlossmacher
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2014.00432

Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens
Cited by: 16
Author(s): Elena Dalla Vecchia, Paul Shao, Elena I. Suvorova, Diego Chiappe, Romain Hamelin, Rizlan Bernier‐Latmani
Software Mentions: 2
Published: about 11 years ago

10.1186/2045-3701-3-37

Proteomic analysis of mismatch repair-mediated alkylating agent-induced DNA damage response
Cited by: 4
Author(s): Xi Chen, Yong Zhao, Guo Min Li, Lin Guo
Software Mentions: 2
Published: about 12 years ago

10.3390/cancers13143618

TRAF6 Phosphorylation Prevents Its Autophagic Degradation and Re-Shapes LPS-Triggered Signaling Networks
Cited by: 3
Author(s): Julia Busch, Rita Moreno, Laureano de la Vega, Vera V. Saul, Susanne Bacher, Felix von Zweydorf, Marius Ueffing, Axel Weber, Christian Johannes Gloeckner, Uwe Linne, Michael Kracht, M. Lienhard Schmitz
Software Mentions: 2
Published: over 4 years ago

10.1186/s12964-018-0257-7

Kv1.3 channel blockade with the Vm24 scorpion toxin attenuates the CD4+ effector memory T cell response to TCR stimulation
Cited by: 19
Author(s): José Ignacio Veytia-Bucheli, Juana María Jiménez-Vargas, Erika Melchy-Pérez, Monserrat Alba Sandoval-Hernández, Lourival D. Possani, Yvonne Rosenstein
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0221669

Cholinergic-like neurons carrying PSEN1 E280A mutation from familial Alzheimer’s disease reveal intraneuronal sAPPβ fragments accumulation, hyperphosphorylation of TAU, oxidative stress, apoptosis and Ca2+ dysregulation: Therapeutic implications
Cited by: 16
Author(s): Viviana Soto-Mercado, Miguel Mendivil-Perez, Carlos Vélez-Pardo, Francisco Lopera, Marlene Jiménez-Del-Río
Software Mentions: 2
Published: over 5 years ago

10.1038/mt.2016.112

Long Non-coding RNA BGas Regulates the Cystic Fibrosis Transmembrane Conductance Regulator
Cited by: 26
Author(s): Sheena Saayman, Amanda Ackley, Jon Burdach, Matthew Clemson, Dieter C. Gruenert, Kiyoshi Tachikawa, Pad Chivukula, Marc S. Weinberg, Kevin V. Morris
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0115213

Microtubule-Dependent Modulation of Adhesion Complex Composition
Cited by: 37
Author(s): Daniel Ng, Jonathan D. Humphries, Adam Byron, Angélique Millon‐Frémillon
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0140650

Sperm Proteome Maturation in the Mouse Epididymis
Cited by: 83
Author(s): Sheri Skerget, Matthew Rosenow, Konstantinos Pétritis, Timothy L. Karr
Software Mentions: 2
Published: almost 10 years ago

10.1371/journal.pone.0188105

Profiling of proteins secreted in the bovine oviduct reveals diverse functions of this luminal microenvironment
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Author(s): Viju Vijayan Pillai, Darren Weber, Brett S. Phinney, Vimal Selvaraj
Software Mentions: 2
Published: almost 8 years ago

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