pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1371/journal.ppat.1003830

Lysine Acetyltransferase GCN5b Interacts with AP2 Factors and Is Required for Toxoplasma gondii Proliferation
Cited by: 61
Author(s): Jiachen Wang, Stacy E. Dixon, Li Min Ting, Ting-Kai Liu, Victoria Jeffers, Matthew McKnight Croken, Myrasol Calloway, Dominique Cannella, Mohamed‐Ali Hakimi, Kami Kim, William J. Sullivan
Software Mentions: 2
Published: over 12 years ago

10.3389/fpls.2017.01134

Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode
Cited by: 13
Author(s): Fan Lin, Brad J. Williams, Padmavathi A V Thangella, Adam Ladak, Athena Schepmoes, Hernando J. Olivos, Kangmei Zhao, Stephen Callister, Laura E. Bartley
Software Mentions: 2
Published: about 9 years ago

10.3389/fphys.2017.00793

Integrative Temporo-Spatial, Mineralogic, Spectroscopic, and Proteomic Analysis of Postnatal Enamel Development in Teeth with Limited Growth
Cited by: 8
Author(s): Mirali Pandya, Hui Liu, Smit Dangaria, Weiying Zhu, Leo L. Li, Shuang Pan, Moufida Abufarwa, Roderick G. Davis, Stephen Guggenheim, Timothy A. Keiderling, Xianghong Luan, Thomas G.H. Diekwisch
Software Mentions: 2
Published: almost 9 years ago

10.3389/fpls.2019.01657

A LysR-Type Transcriptional Regulator LcrX Is Involved in Virulence, Biofilm Formation, Swimming Motility, Siderophore Secretion, and Growth in Sugar Sources in Xanthomonas axonopodis Pv. glycines
Cited by: 14
Author(s): Hanbi Park, Eunsoo Do, Minyoung Kim, Hye-Jee Park, Jong-Chan Lee, Sang-Wook Han
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.ppat.1006001

The Listeria monocytogenes PASTA Kinase PrkA and Its Substrate YvcK Are Required for Cell Wall Homeostasis, Metabolism, and Virulence
Cited by: 61
Author(s): Daniel A. Pensinger, Kyle Boldon, Grischa Y. Chen, William J.B. Vincent, Sherman Kyle, Min Xiong, Adam J. Schaenzer, Emily R. Forster, Jörn Coers, Rob Striker, John-Demian Sauer
Software Mentions: 2
Published: almost 10 years ago

10.1186/1477-5956-7-9

A novel approach to denoising ion trap tandem mass spectra
Cited by: 27
Author(s): Jiarui Ding, Jinhong Shi, Guy G. Poirier, Fang‐Xiang Wu
Software Mentions: 2
Published: over 17 years ago

10.1038/srep09325

Clustered Distribution of Natural Product Leads of Drugs in the Chemical Space as Influenced by the Privileged Target-Sites
Cited by: 18
Author(s): Tao Lin, Feng Zhu, Qing Chu, Cheng Zhang, Shangying Chen, Peng Zhang, Cunlong Zhang, Chunyan Tan, Chunmei Gao, Zhe Chen, Yuyang Jiang, Yu Zong Chen
Software Mentions: 2
Published: over 11 years ago

10.3389/fonc.2020.01784

Effects of the Oncoprotein PAX3-FOXO1 on Modulation of Exosomes Function and Protein Content: Implications on Oxidative Stress Protection and Enhanced Plasticity
Cited by: 3
Author(s): Assil Fahs, Farah Ramadan, Farah Ghamloush, Abeer J. Ayoub, Ahmad Faraz, Firas Kobeissy, Yehia Mechref, Jingkun Zhao, Rui Zhu, Nader Hussein, Raya Saab, Sandra E. Ghayad
Software Mentions: 2
Published: about 6 years ago

10.3389/fneur.2018.00465

Environmental Enrichment Upregulates Striatal Synaptic Vesicle-Associated Proteins and Improves Motor Function
Cited by: 6
Author(s): Suk Young Song, Minji Chae, Ji Hea Yu, Min Young Lee, Soonil Pyo, Yeseul Shin, Ahreum Baek, Jung Won Park, Eun Sook Park, Ja Young Choi, Sung Rae Cho
Software Mentions: 2
Published: about 8 years ago

10.3389/fonc.2020.557737

Down-Regulation of Collagen Hydroxylation in Colorectal Liver Metastasis
Cited by: 3
Author(s): Nick A. van Huizen, Peter C. Burgers, Joost van Rosmalen, Michail Doukas, Jan N.M. IJzermans, Theo M. Luider
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2019.00384

Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”
Cited by: 14
Author(s): Samuel M. Luedin, Nicola Storelli, Francesco Danza, Samuele Roman, Matthias Wittwer, Joël F. Pothier, Mauro Tonolla
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-15-945

Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts
Cited by: 25
Author(s): Amanda M. Hulse‐Kemp, Hamid Ashrafi, Xiuting Zheng, Fei Wang, Kevin A. Hoegenauer, Andrea Maeda, Shanshan Yang, Kevin Stoffel, Marta Matvienko, Kimberly Clemons, Joshua A. Udall, Allen Van Deynze, Don C. Jones, David M. Stelly
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmicb.2020.613571

Signal Recognition Particle RNA Contributes to Oxidative Stress Response in Deinococcus radiodurans by Modulating Catalase Localization
Cited by: 9
Author(s): Richou Han, Jaden Fang, Jessie Jiang, Elena K. Gaidamakova, Rok Tkavc, Michael J. Daly, Lydia M. Contreras
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2020.01227

Impact of Different Trace Elements on the Growth and Proteome of Two Strains of Granulicella, Class “Acidobacteriia”
Cited by: 14
Author(s): Ohana Y.A. Costa, Chidinma Oguejiofor, Daniela Zühlke, Cristine Chaves Barreto, Christine Wünsche, Katharina Riedel, Eiko E. Kuramae
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-018-4890-8

A high-density genetic map of extra-long staple cotton (Gossypium barbadense) constructed using genotyping-by-sequencing based single nucleotide polymorphic markers and identification of fiber traits-related QTL in a recombinant inbred line population
Cited by: 24
Author(s): Fan Lü, Liping Wang, Xinyi Wang, Haiyan Zhang, Yanfei Zhu, Jiayan Guo, Wenwei Gao, Hao Geng, Quanjia Chen, Yanying Qu
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.02708

Vesicles From Vibrio cholerae Contain AT-Rich DNA and Shorter mRNAs That Do Not Correlate With Their Protein Products
Cited by: 15
Author(s): Petter Langlete, Anders K. Krabberød, Hanne C. Winther‐Larsen
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2014.00259

Interactions of proteins with biogenic iron oxyhydroxides and a new culturing technique to increase biomass yields of neutrophilic, iron-oxidizing bacteria
Cited by: 4
Author(s): Roman A. Barco, Katrina J. Edwards
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2014.00432

Characterization of the surfaceome of the metal-reducing bacterium Desulfotomaculum reducens
Cited by: 16
Author(s): Elena Dalla Vecchia, Paul Shao, Elena I. Suvorova, Diego Chiappe, Romain Hamelin, Rizlan Bernier‐Latmani
Software Mentions: 2
Published: about 12 years ago

10.3389/fmicb.2017.01772

Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling
Cited by: 21
Author(s): Sergio Triana, Hans de Cock, Robin A. Ohm, Giovanna Danies, Han A. B. Wösten, Silvia Restrepo, Andrés Fernando González Barrios, Adriana Celis
Software Mentions: 2
Published: about 9 years ago

10.3389/fmicb.2017.02586

Abundance of Secreted Proteins of Trichoderma reesei Is Regulated by Light of Different Intensities
Cited by: 25
Author(s): Eva Stappler, Jonathan D. Walton, Sabrina Beier, Monika Schmoll
Software Mentions: 2
Published: almost 9 years ago

10.3389/fphys.2015.00039

Dissection of the radical reactions linked to fetal hemoglobin reveals enhanced pseudoperoxidase activity
Cited by: 31
Author(s): Khuanpiroon Ratanasopa, Michael Brad Strader, Abdu I. Alayash, Leif Bülow
Software Mentions: 2
Published: over 11 years ago

10.1186/1471-2164-15-S12-S2

Time-course human urine proteomics in space-flight simulation experiments
Cited by: 22
Author(s): Hans Binder, Henry Wirth, Arsen Arakelyan, Kathrin Lembcke, Evgeny S. Tiys, В. А. Иванисенко, Н. А. Колчанов, Alexey Kononikhin, Igor Popov, E. N. Nikolaev, Л. Х. Пастушкова, И. М. Ларина
Software Mentions: 2
Published: almost 12 years ago

10.3389/fmed.2017.00080

Assessment of Circulating Protein Signatures for Kidney Transplantation in Pediatric Recipients
Cited by: 9
Author(s): Tara K. Sigdel, Minnie M. Sarwal
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2012.00393

Current Approaches on Viral Infection: Proteomics and Functional Validations
Cited by: 7
Author(s): Jie Zheng, Boon Huan Tan, Richard J. Sugrue, Kai Tang
Software Mentions: 2
Published: almost 15 years ago

10.3389/fimmu.2021.625649

Complement-Opsonized HIV Modulates Pathways Involved in Infection of Cervical Mucosal Tissues: A Transcriptomic and Proteomic Study
Cited by: 2
Author(s): Cecilia Svanberg, Rada Ellegård, Elisa Crisci, Mohammad Khalid, Ninnie Borendal Wodlin, Maria Svenvik, Sofia Nyström, Kenzie Birse, Adam Burgener, Esaki M. Shankar, Marie Larsson
Software Mentions: 2
Published: over 5 years ago

10.3389/fevo.2019.00085

Alternative Transcription at Venom Genes and Its Role as a Complementary Mechanism for the Generation of Venom Complexity in the Common House Spider
Cited by: 13
Author(s): Robert A. Haney, Taylor Matte, FitzAnthony S. Forsyth, Jessica E. Garb
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2014.00067

Pancreatic Cancer Cells Isolated from Muc1-Null Tumors Favor the Generation of a Mature Less Suppressive MDSC Population
Cited by: 11
Author(s): Amritha Kidiyoor, Jorge Schettini, Dahlia M. Besmer, Stephen L. Rego, Sritama Nath, Jennifer M. Curry, Lopamudra Das Roy, Didier Dréau, Pinku Mukherjee
Software Mentions: 2
Published: almost 13 years ago

10.3389/fmicb.2018.01397

The Role of Mass Spectrometry in Structural Studies of Flavin-Based Electron Bifurcating Enzymes
Cited by: 8
Author(s): Monika Tokmina‐Lukaszewska, Angela Patterson, Luke Berry, Liam W. Scott, Narayanaganesh Balasubramanian, Brian Bothner
Software Mentions: 2
Published: about 8 years ago

10.3389/fcell.2020.616706

Identification of the Myogenetic Oligodeoxynucleotides (myoDNs) That Promote Differentiation of Skeletal Muscle Myoblasts by Targeting Nucleolin
Cited by: 11
Author(s): Sayaka Shinji, Koji Umezawa, Yuma Nihashi, Shun‐ichi Nakamura, Takeshi Shimosato, Tomohide Takaya
Software Mentions: 2
Published: over 5 years ago

10.3389/fcimb.2021.724569

An Innovative Protocol for Metaproteomic Analyses of Microbial Pathogens in Cystic Fibrosis Sputum
Cited by: 6
Author(s): Alexander C. Graf, Johanna Striesow, Jan Pané‐Farré, Thomas Sura, Martina Wurster, Michael Lalk, Dietmar H. Pieper, Dörte Becher, Barbara C. Kahl, Katharina Riedel
Software Mentions: 2
Published: about 5 years ago

10.1186/s12864-015-2262-1

Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea
Cited by: 13
Author(s): Kondethimmanahalli H. Chandramouli, Sarah Al-Aqeel, Taewoo Ryu, Huoming Zhang, Loqmane Seridi, Yanal Ghosheh, Pei‐Yuan Qian, Timothy Ravasi
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-12-267

Differential distribution of a SINE element in the Entamoeba histolytica and Entamoeba dispar genomes: Role of the LINE-encoded endonuclease
Cited by: 13
Author(s): Vandana Kumari, Rahul Sharma, Vijay Pal Yadav, Abhishek Kumar Gupta, Alok Bhattacharya, Sudha Bhattacharya
Software Mentions: 2
Published: over 15 years ago

10.1186/s13068-018-1350-2

Effects of amino acids on the lignocellulose degradation by Aspergillus fumigatus Z5: insights into performance, transcriptional, and proteomic profiles
Cited by: 19
Author(s): Jiaxi Miao, Mengmeng Wang, Lei Ma, Tuo Li, Qiwei Huang, Dongyang Liu, Qirong Shen
Software Mentions: 2
Published: over 7 years ago

10.1186/s12859-017-1563-6

ProteoModlR for functional proteomic analysis
Cited by: 5
Author(s): Paolo Cifani, Mojdeh Shakiba, Sagar Chhangawala, Alex Kentsis
Software Mentions: 2
Published: over 9 years ago

10.3389/fcell.2020.00700

Tubular ER Associates With Diacylglycerol-Rich Structures During Lipid Droplet Consumption
Cited by: 4
Author(s): Suriakarthiga Ganesan, Marjan Tavassoli, Brittney Shabits, Vanina Zaremberg
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2020.00448

Combination Analysis of Metatranscriptome and Metagenome Reveal the Composition and Functional Response of Coral Symbionts to Bleaching During an El Niño Event
Cited by: 9
Author(s): Fu-Lin Sun, Hongqiang Yang, Guan Wang, Quan Shi
Software Mentions: 2
Published: over 6 years ago

10.1186/2045-3701-3-37

Proteomic analysis of mismatch repair-mediated alkylating agent-induced DNA damage response
Cited by: 4
Author(s): Xi Chen, Yong Zhao, Guo Min Li, Lin Guo
Software Mentions: 2
Published: about 13 years ago

10.1186/1471-2164-9-595

Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species
Cited by: 53
Author(s): Hernán Lorenzi, Mathangi Thiagarajan, Brian J. Haas, Jennifer Wortman, Neil Hall, Elisabet Caler
Software Mentions: 2
Published: almost 18 years ago

10.3390/cancers13143618

TRAF6 Phosphorylation Prevents Its Autophagic Degradation and Re-Shapes LPS-Triggered Signaling Networks
Cited by: 3
Author(s): Julia Busch, Rita Moreno, Laureano de la Vega, Vera V. Saul, Susanne Bacher, Felix von Zweydorf, Marius Ueffing, Axel Weber, Christian Johannes Gloeckner, Uwe Linne, Michael Kracht, M. Lienhard Schmitz
Software Mentions: 2
Published: about 5 years ago

10.1186/s12964-018-0257-7

Kv1.3 channel blockade with the Vm24 scorpion toxin attenuates the CD4+ effector memory T cell response to TCR stimulation
Cited by: 19
Author(s): José Ignacio Veytia-Bucheli, Juana María Jiménez-Vargas, Erika Melchy-Pérez, Monserrat Alba Sandoval-Hernández, Lourival D. Possani, Yvonne Rosenstein
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0140650

Sperm Proteome Maturation in the Mouse Epididymis
Cited by: 83
Author(s): Sheri Skerget, Matthew Rosenow, Konstantinos Pétritis, Timothy L. Karr
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2164-15-95

Characterization of the membrane proteome and N-glycoproteome in BV-2 mouse microglia by liquid chromatography-tandem mass spectrometry
Cited by: 17
Author(s): Dohyun Han, Seong-Yong Moon, Yikwon Kim, Hophil Min, Youngsoo Kim
Software Mentions: 2
Published: over 12 years ago

10.1007/s00726-021-03006-7

Gamma-gliadin specific celiac disease antibodies recognize p31-43 and p57-68 alpha gliadin peptides in deamidation related manner as a result of cross-reaction
Cited by: 7
Author(s): Ádám Diós, Rita Elek, Ildikò Szabó, Szilvia Horváth, Judit Gyimesi, Róbert Király, Katharina Werkstetter, Sibylle Koletzko, László Fésüs, Ilma Rita Korponay-Szabó
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers6031464

Phosphorylation of Large T Antigen Regulates Merkel Cell Polyomavirus Replication
Cited by: 19
Author(s): José Ángel Menéndez Díaz, Xin Wang, Sabrina H. Tsang, Jing Jiao, Jianxin You
Software Mentions: 2
Published: about 12 years ago

10.1038/s41419-021-03589-9

Non-canonical role of wild-type SEC23B in the cellular stress response pathway
Cited by: 3
Author(s): Lamis Yehia, Darren Liu, Shuai Fu, Pranav Iyer, Charis Eng
Software Mentions: 2
Published: over 5 years ago

10.1186/s13075-019-1961-4

Proteomic and histopathological characterisation of sicca subjects and primary Sjögren’s syndrome patients reveals promising tear, saliva and extracellular vesicle disease biomarkers
Cited by: 58
Author(s): Lara A. Aqrawi, Hilde Kanli Galtung, Eduarda Guerreiro, Reidun Øvstebø, Bernd Thiede, Tor Paaske Utheim, Xiangjun Chen, Øygunn Aass Utheim, Øyvind Palm, Kathrine Skarstein, Janicke Liaaen Jensen
Software Mentions: 2
Published: about 7 years ago

10.1186/s40478-019-0796-1

Composition of the Intranuclear Inclusions of Fragile X-associated Tremor/Ataxia Syndrome
Cited by: 45
Author(s): Lisa Ma, Anthony W. Herren, Glenda Espinal, Jamie L. Randol, Bridget McLaughlin, Verónica Martínez‐Cerdeño, Isaac N. Pessah, Randi J. Hagerman, Paul J. Hagerman
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0115213

Microtubule-Dependent Modulation of Adhesion Complex Composition
Cited by: 37
Author(s): Daniel Ng, Jonathan D. Humphries, Adam Byron, Angélique Millon‐Frémillon
Software Mentions: 2
Published: almost 12 years ago

10.1186/s12864-021-07678-z

ddRAD sequencing: an emerging technology added to the biosecurity toolbox for tracing the origin of brown marmorated stink bug, Halyomorpha halys (Hemiptera: Pentatomidae)
Cited by: 6
Author(s): Yan Ji, Gábor Vétek, Chandan Pal, Jinping Zhang, Rania Gmati, Qing-Hai Fan, Disna N. Gunawardana, Allan Burne, Diane Anderson, K. B. Rebijith, Sherly George, Péter Farkas, Dongmei Li
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0215267

Muscle fiber hypertrophy in response to 6 weeks of high-volume resistance training in trained young men is largely attributed to sarcoplasmic hypertrophy
Cited by: 52
Author(s): Cody T. Haun, Christopher G. Vann, Shelby C. Osburn, Petey W. Mumford, Paul A. Roberson, Matthew A. Romero, Carlton D. Fox, Christopher Johnson, Hailey A. Parry, Andreas N. Kavazis, Jordan R. Moon, Veera L.D. Badisa, Benjamin M. Mwashote, Victor Ibeanusi, Kaelin C. Young, Michael D. Roberts
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0221669

Cholinergic-like neurons carrying PSEN1 E280A mutation from familial Alzheimer’s disease reveal intraneuronal sAPPβ fragments accumulation, hyperphosphorylation of TAU, oxidative stress, apoptosis and Ca2+ dysregulation: Therapeutic implications
Cited by: 16
Author(s): Viviana Soto-Mercado, Miguel Mendivil-Perez, Carlos Vélez-Pardo, Francisco Lopera, Marlene Jiménez-Del-Río
Software Mentions: 2
Published: over 6 years ago

10.1002/btpr.2978

Multiplexed clonality verification of cell lines for protein biologic production
Cited by: 4
Author(s): Sofie A. O’Brien, Juhi Ojha, Paul Y K Wu, Wei Shou Hu
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-019-5817-8

Genome description of Phlebia radiata 79 with comparative genomics analysis on lignocellulose decomposition machinery of phlebioid fungi
Cited by: 16
Author(s): Mari Mäkinen, Jaana Kuuskeri, Pia Laine, Olli‐Pekka Smolander, Andriy Kovalchuk, Zhen Zeng, Fred O. Asiegbu, Lars Paulín, Petri Auvinen, Taina Lundell
Software Mentions: 2
Published: over 7 years ago

10.3389/fimmu.2021.621744

In Vitro Culture Expansion Shifts the Immune Phenotype of Human Adipose-Derived Mesenchymal Stem Cells
Cited by: 25
Author(s): Richard Jeske, Xuegang Yuan, Qin Fu, Bruce A. Bunnell, Timothy M. Logan, Yan Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2017.00358

Human Melanoma-Derived Extracellular Vesicles Regulate Dendritic Cell Maturation
Cited by: 44
Author(s): Rachel L.G. Maus, James W. Jakub, Wendy K. Nevala, Trace Christensen, Klara E. Noble-Orcutt, Zohar Sachs, Tina J. Hieken, Svetomir N. Markovic
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0188105

Profiling of proteins secreted in the bovine oviduct reveals diverse functions of this luminal microenvironment
Cited by: 36
Author(s): Viju Vijayan Pillai, Darren Weber, Brett S. Phinney, Vimal Selvaraj
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.00330

Transcriptional and Proteomic Choreography Under Phosphorus Deficiency and Re-supply in the N2 Fixing Cyanobacterium Trichodesmium erythraeum
Cited by: 11
Author(s): Kyle R. Frischkorn, Sheean T. Haley, Sonya T. Dyhrman
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2164-15-536

Characterization and potential evolutionary impact of transposable elements in the genome of Cochliobolus heterostrophus
Cited by: 27
Author(s): Mateus Ferreira Santana, José Cleydson Ferreira da Silva, Eduardo S. G. Mizubuti, Elza Fernandes de Araújo, Bradford Condon, B. Gillian Turgeon, Marisa Vieira de Queiroz
Software Mentions: 2
Published: over 12 years ago

10.3390/biology9090294

A Poplar Rust Effector Protein Associates with Protein Disulfide Isomerase and Enhances Plant Susceptibility
Cited by: 8
Author(s): Mst Hur Madina, Saifur Rahman, Xiaoqiang Huang, Yang Zhang, Huanquan Zheng, Hugo Germain
Software Mentions: 2
Published: about 6 years ago

10.3934/Neuroscience.2019.4.299

Brain proteomics links oxidative stress with metabolic and cellular stress response proteins in behavioural alteration of Alzheimer’s disease model rats
Cited by: 3
Author(s): Mohammad Azizur Rahman, Shahdat Hossain, Noorlidah Abdullah, Norhaniza Aminudin
Software Mentions: 2
Published: almost 8 years ago

10.3389/fmicb.2020.00598

Elucidating the Regulon of a Fur-like Protein in Mycobacterium avium subsp. paratuberculosis (MAP)
Cited by: 6
Author(s): Fernanda Miyagaki Shoyama, Taveesak Janetanakit, John P. Bannantine, Raúl G. Barletta, Srinand Sreevatsan
Software Mentions: 2
Published: over 6 years ago

10.1186/s12915-017-0439-6

Hybrid de novo genome assembly and centromere characterization of the gray mouse lemur (Microcebus murinus)
Cited by: 54
Author(s): Peter A. Larsen, R. Alan Harris, Yue Liu, Shwetha C. Murali, C. Ryan Campbell, Adam D. Brown, Beth A. Sullivan, Jennifer Shelton, Susan J. Brown, Muthuswamy Raveendran, Olga Dudchenko, Ido Machol, Neva C. Durand, Muhammad S. Shamim, E Aiden, Donna M. Muzny, Richard A. Gibbs, Anne D. Yoder, Jeffrey Rogers, Kim C. Worley
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2018.01316

A Bcl-2 Associated Athanogene (bagA) Modulates Sexual Development and Secondary Metabolism in the Filamentous Fungus Aspergillus nidulans
Cited by: 4
Author(s): Sachin Jain, Philipp Wiemann, Elizabeth Thill, Brett Williams, Nancy P. Keller, Mehdi Kabbage
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-015-2076-1

Molt-dependent transcriptomic analysis of cement proteins in the barnacle Amphibalanus amphitrite
Cited by: 31
Author(s): Wenxu Zheng, Dagmar H. Leary, Jinny Liu, Robert E. Settlage, Kenan P. Fears, Stella H. North, Anahita Mostaghim, Tara Essock‐Burns, Sarah E. Haynes, Kathryn J. Wahl, Christopher M. Spillmann
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pone.0220568

Delineating the role of FANCA in glucose-stimulated insulin secretion in β cells through its protein interactome
Cited by: 6
Author(s): Dragana Lagundžin, Wen Feng Hu, Henry C.-H. Law, Kimiko L. Krieger, Fangfang Qiao, Emalie J. Clement, Andjela Drincic, Olgica Nedić, Michael J. Naldrett, Sophie Alvarez, Nicholas T. Woods
Software Mentions: 2
Published: about 7 years ago

10.1186/s12964-016-0133-2

The arabidopsis cyclic nucleotide interactome
Cited by: 34
Author(s): Lara Donaldson, Stuart Meier, Chris Gehring
Software Mentions: 2
Published: over 10 years ago

10.1242/bio.037937

Physiological profile of undifferentiated bovine blastocyst-derived trophoblasts
Cited by: 13
Author(s): Viju Vijayan Pillai, L. G. B. Siqueira, Moubani Das, Tiffany G. Kei, Lan N. Tu, Anthony W. Herren, Brett S. Phinney, Soon Hon Cheong, Peter J. Hansen, Vimal Selvaraj
Software Mentions: 2
Published: almost 8 years ago

10.1371/journal.pone.0028532

Conserved BK Channel-Protein Interactions Reveal Signals Relevant to Cell Death and Survival
Cited by: 38
Author(s): Bernd Sokolowski, Sandra Orchard, Margaret Harvey, Settu Sridhar, Yoshihisa Sakai
Software Mentions: 2
Published: almost 15 years ago

10.3389/fmicb.2018.00755

The Membrane-Bound C Subunit of Reductive Dehalogenases: Topology Analysis and Reconstitution of the FMN-Binding Domain of PceC
Cited by: 19
Author(s): Géraldine Florence Buttet, Mathilde Stéphanie Willemin, Romain Hamelin, Aamani Rupakula, Julien Maillard
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0228134

Proteomic profiling of proteins in the dorsal horn of the spinal cord in dairy cows with chronic lameness
Cited by: 2
Author(s): Daniel Herzberg, Pablo Strobel, Heine Yacob Müller, Constanza Meneses, Mads Werner, Hedie Bustamante
Software Mentions: 2
Published: over 6 years ago

10.3389/fnmol.2018.00243

Use of Proteomic Imaging Coupled With Transcriptomic Analysis to Identify Biomolecules Responsive to Cochlear Injury
Cited by: 2
Author(s): Kenyaria V. Noble, Michelle L. Reyzer, Jeremy L. Barth, Hayes McDonald, Michael Tuck, Kevin L. Schey, Edward L. Krug, Hainan Lang
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-019-5981-x

Genome survey and high-resolution backcross genetic linkage map construction of the ridgetail white prawn Exopalaemon carinicauda applications to QTL mapping of growth traits
Cited by: 14
Author(s): Jitao Li, Jianjian Lv, Ping Liu, Ping Chen, Jiajia Wang, Jian Li
Software Mentions: 2
Published: about 7 years ago

10.3389/fnut.2020.583397

Bifidobacterium infantis Metabolizes 2′Fucosyllactose-Derived and Free Fucose Through a Common Catabolic Pathway Resulting in 1,2-Propanediol Secretion
Cited by: 18
Author(s): Liv R Dedon, Ezgi Özcan, Asha Rani, David A. Sela
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0028949

Proteome Changes Driven by Phosphorus Deficiency and Recovery in the Brown Tide-Forming Alga Aureococcus anophagefferens
Cited by: 60
Author(s): Louie L. Wurch, Erin M. Bertrand, Mak A. Saito, Benjamin A. S. Van Mooy, Sonya T. Dyhrman
Software Mentions: 2
Published: almost 15 years ago

10.1093/bioinformatics/btaa288

HiC-Hiker: a probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C
Cited by: 11
Author(s): Ryo Nakabayashi, Shinichi Morishita
Software Mentions: 2
Published: over 6 years ago

10.1186/s12864-019-5750-x

Waking the sleeping dragon: gene expression profiling reveals adaptive strategies of the hibernating reptile Pogona vitticeps
Cited by: 14
Author(s): Alexander Capraro, Denis O’Meally, Shafagh A. Waters, Hardip R. Patel, Arthur Georges, Paul D. Waters
Software Mentions: 2
Published: over 7 years ago

10.3389/fpls.2018.00818

Proteomic Profiling and Epitope Analysis of the Complex α-, γ-, and ω-Gliadin Families in a Commercial Bread Wheat
Cited by: 12
Author(s): Kyoungwon Cho, Hye-Rang Beom, You-Ran Jang, Susan B. Altenbach, William H. Vensel, Annamaria Simon-Buss, Sung-Hun Lim, Min Kim, Jong-Yeol Lee
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0007050

Barrier-to-Autointegration Factor Proteome Reveals Chromatin-Regulatory Partners
Cited by: 93
Author(s): Rocío Montes de, Christopher J. Shoemaker, Marjan Guček, Robert N. Cole, Katherine L. Wilson
Software Mentions: 2
Published: about 17 years ago

10.1016/j.bbapap.2013.04.004

A tutorial for software development in quantitative proteomics using PSI standard formats
Cited by: 5
Author(s): Faviel F. Gonzalez-Galarza, Da Qi, Jun Fan, Conrad Bessant, Andrew R. Jones
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12864-019-6194-z

The olfactory secretome varies according to season in female sheep and goat
Cited by: 7
Author(s): P A Cann, Malika Chabi, Aliénor Delsart, Chrystelle Le Danvic, Jean‐Michel Saliou, Manon Chasles, Matthieu Keller, Patricia Nagnan‐Le Meillour
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.mbplus.2020.100027

Proteomic fingerprints of damage in extracellular matrix assemblies
Cited by: 18
Author(s): Alexander Eckersley, Matiss Ozols, Ronan O’Cualain, Emma-Jayne Keevill, April Foster, Suzanne M. Pilkington, David Knight, Christopher E.M. Griffiths, Rachel Watson, Michael J. Sherratt
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-15-306

Proteomic analysis of Daphnia magna hints at molecular pathways involved in defensive plastic responses
Cited by: 35
Author(s): Kerstin Otte, Thomas Fröhlich, Georg J. Arnold, Christian Laforsch
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2407-11-368

Purine Nucleoside Phosphorylase mediated molecular chemotherapy and conventional chemotherapy: A tangible union against chemoresistant cancer
Cited by: 11
Author(s): Preetinder Singh, Swapna Joshi, Pamela J. Russell, Sham V. Nair, Aparajita Khatri
Software Mentions: 2
Published: about 15 years ago

10.1371/journal.pone.0136362

Proteins with Intrinsically Disordered Domains Are Preferentially Recruited to Polyglutamine Aggregates
Cited by: 30
Author(s): Maggie P. Wear, Dmitry Kryndushkin, Robert N. O’Meally, Jason L. Sonnenberg, Robert N. Cole, Frank Shewmaker
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0218360

Candida utilis yeast as a functional protein source for Atlantic salmon (Salmo salar L.): Local intestinal tissue and plasma proteome responses
Cited by: 14
Author(s): Felipe Eduardo Reveco-Urzua, Mette Hofossæter, Mallikarjuna Rao Kovi, Liv Torunn Mydland, Ragnhild Ånestad, Randi Sørby, Charles McL. Press, Leidy Lagos, Margareth Øverland
Software Mentions: 2
Published: almost 7 years ago

10.1002/acn3.51242

Elevated levels of extracellular vesicles in progranulin‐deficient mice and FTD‐ GRN Patients
Cited by: 7
Author(s): Andrew E. Arrant, Skylar E. Davis, Rachael M Vollmer, Charles Murchison, James A. Mobley, Alissa L. Nana, Salvatore Spina, Lea T. Grinberg, Anna Karydas, Bruce L. Miller, William W. Seeley, Erik D. Roberson
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1008307

An activator of G protein-coupled receptor and MEK1/2-ERK1/2 signaling inhibits HIV-1 replication by altering viral RNA processing
Cited by: 7
Author(s): Raymond Wong, Ahalya Balachandran, Peter K. Cheung, Ran Cheng, Qun Pan, Peter Stoilov, P. Richard Harrigan, Benjamin J. Blencowe, Donald R. Branch, Alan Cochrane
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0064044

Urine Proteins Identified by Two-Dimensional Differential Gel Electrophoresis Facilitate the Differential Diagnoses of Scrapie
Cited by: 9
Author(s): Lise Lamoureux, Sharon L R Simon, Margot Plews, Viola Ruddat, Simone Brunet, Catherine Graham, Stefanie Czub, J. David Knox
Software Mentions: 2
Published: over 13 years ago

10.1042/BJ20130579

Nogo-A couples with Apg-1 through interaction and co-ordinate expression under hypoxic and oxidative stress
Cited by: 13
Author(s): Florian Kern, Ruslan I. Stanika, Bettina Sarg, Martin Offterdinger, Daniel Heß, Gerald J. Obermair, Herbert Lindner, Christine E. Bandtlow, Ludger Hengst, Rüdiger Schweigreiter
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pone.0119523

Experimental Study on Differences in Clivus Chordoma Bone Invasion: An iTRAQ-Based Quantitative Proteomic Analysis
Cited by: 16
Author(s): Zhen Wu, Liang Wang, Zhengguang Guo, Ke Wang, Yang Zhang, Kaibing Tian, Junting Zhang, Wei Sun, Chunmei Yu
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0021991

A Novel Role of Protein Tyrosine Kinase2 in Mediating Chloride Secretion in Human Airway Epithelial Cells
Cited by: 7
Author(s): Lianchun Liang, Owen M. Woodward, Zhaohui Chen, Robert J. Cotter, William B. Guggino
Software Mentions: 2
Published: about 15 years ago

10.3390/proteomes7010010

Comparative Proteomic Analysis Unveils Critical Pathways Underlying the Role of Nitrogen Fertilizer Treatment in American Elderberry
Cited by: 1
Author(s): Bo Yang, Andrew L. Thomas, C. Michael Greenlief
Software Mentions: 2
Published: over 7 years ago

10.3390/proteomes7020014

Extracellular Vesicle Integrins Distinguish Unique Cancers
Cited by: 43
Author(s): Stephanie N. Hurwitz, David G. Meckes
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0018497

A Mighty Small Heart: The Cardiac Proteome of Adult Drosophila melanogaster
Cited by: 81
Author(s): Anthony Cammarato, Christian H. Ahrens, Nakissa N. Alayari, Ermir Qeli, Jasma Rucker, Mary C. Reedy, Christian M. Zmasek, Marjan Guček, Robert N. Cole, Jennifer E. Van Eyk, Rolf Bodmer, Brian O’Rourke, Sanford I. Bernstein, D. Brian Foster
Software Mentions: 2
Published: over 15 years ago

10.1098/rsos.181433

Proteomic method to extract, concentrate, digest and enrich peptides from fossils with coloured (humic) substances for mass spectrometry analyses
Cited by: 9
Author(s): Elena R. Schroeter, Kevin Blackburn, Michael B. Goshe, Mary H. Schweitzer
Software Mentions: 2
Published: about 7 years ago

10.1186/s12934-019-1243-5

Redesigning the Aspergillus nidulans xylanase regulatory pathway to enhance cellulase production with xylose as the carbon and inducer source
Cited by: 4
Author(s): P. Ballmann, Jorge D. Lightfoot, Majon Muller, Stefan Dröge, Rolf A. Prade
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.xpro.2021.100417

Identifying cytokine signaling signatures in primary human Th-1 cells by phospho-proteomics analysis
Cited by: 0
Author(s): Jonathan Martínez-Fábregas, Elizabeth Pöhler, Ignacio Moraga
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0150239

Identification of Interactions in the NMD Complex Using Proximity-Dependent Biotinylation (BioID)
Cited by: 30
Author(s): Christoph Schweingruber, Paolo Soffientini, Marc‐David Ruepp, Ángela Bachi, Oliver Mühlemann
Software Mentions: 2
Published: over 10 years ago

10.1038/srep15443

Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations
Cited by: 75
Author(s): Abdallah Abdallah, Grant A. Hill-Cawthorne, Thomas D. Otto, Francesc Español i Coll, José Afonso Guerra-Assunção, Ge Gao, Raeece Naeem, Hifzur Rahman Ansari, Tareq B. Malas, Sabir A. Adroub, Theo Verboom, Roy Ummels, Huoming Zhang, Aswini K. Panigrahi, Ruth McNerney, Roland Brosch, Taane G. Clark, Marcel A. Behr, Wilbert Bitter, Arnab Pain
Software Mentions: 2
Published: almost 11 years ago

10.1002/mbo3.218

Characterization of the bile and gall bladder microbiota of healthy pigs
Cited by: 45
Author(s): Esther Jiménez, Borja Sánchez, Annarita Farina, Abelardo Margollés, Juan M. Rodríguez
Software Mentions: 2
Published: almost 12 years ago

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