pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2014.00259

Interactions of proteins with biogenic iron oxyhydroxides and a new culturing technique to increase biomass yields of neutrophilic, iron-oxidizing bacteria
Cited by: 4
Author(s): Roman A. Barco, Katrina J. Edwards
Software Mentions: 2
Published: over 12 years ago

10.3389/fmicb.2017.02586

Abundance of Secreted Proteins of Trichoderma reesei Is Regulated by Light of Different Intensities
Cited by: 25
Author(s): Eva Stappler, Jonathan D. Walton, Sabrina Beier, Monika Schmoll
Software Mentions: 2
Published: over 8 years ago

10.1128/mBio.00603-21

Toxoplasma gondii Matrix Antigen 1 Is a Secreted Immunomodulatory Effector
Cited by: 14
Author(s): Tadakimi Tomita, Debanjan Mukhopadhyay, Bing Han, Rama R. Yakubu, Vincent Tu, Joshua Mayoral, Tatsuki Sugi, Yanfen Ma, Jeroen P. J. Saeij, Louis M. Weiss
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.613571

Signal Recognition Particle RNA Contributes to Oxidative Stress Response in Deinococcus radiodurans by Modulating Catalase Localization
Cited by: 9
Author(s): Richou Han, Jaden Fang, Jessie Jiang, Elena K. Gaidamakova, Rok Tkavc, Michael J. Daly, Lydia M. Contreras
Software Mentions: 2
Published: over 5 years ago

10.1128/mBio.01129-21

Gene Erosion Can Lead to Gain-of-Function Alleles That Contribute to Bacterial Fitness
Cited by: 4
Author(s): Julien Mortier, Elisa Gayán, Ronald Van Eyken, Oscar Enrique Torres Montaguth, Laleh Khodaparast, Laleh Khodaparast, Bert Houben, Sébastien Carpentier, Frédéric Rousseau, Joost Schymkowitz, Abram Aertsen
Software Mentions: 2
Published: about 5 years ago

10.1016/j.dib.2020.106064

Tandem mass tagged dataset used to characterize muscle-specific proteome changes in beef during early postmortem period
Cited by: 2
Author(s): Chaoyu Zhai, B. A. Djimsa, Kitty Brown, Jessica E. Prenni, D. R. Woerner, K. E. Belk, Mahesh N. Nair
Software Mentions: 2
Published: almost 6 years ago

10.3390/cells9061423

Chromatin Trapping of Factors Involved in DNA Replication and Repair Underlies Heat-Induced Radio- and Chemosensitization
Cited by: 3
Author(s): Artem V. Luzhin, Bogdan Avanesyan, Artem K. Velichko, Victoria О. Shender, Natalia Ovsyannikova, Georgij Arapidi, Polina V. Shnaider, Nadezhda V. Petrova, Igor I. Kireev, Sergey V. Razin, Omar L. Kantidze
Software Mentions: 2
Published: over 6 years ago

10.1128/mSphere.00135-17

Heparin Mimics Extracellular DNA in Binding to Cell Surface-Localized Proteins and Promoting Staphylococcus aureus Biofilm Formation
Cited by: 31
Author(s): Sharad Mishra, Alexander R. Horswill
Software Mentions: 2
Published: about 9 years ago

10.1128/mSphere.00100-20

MAG2, a Toxoplasma gondii Bradyzoite Stage-Specific Cyst Matrix Protein
Cited by: 8
Author(s): Vincent Tu, Joshua Mayoral, Rama R. Yakubu, Tadakimi Tomita, Tatsuki Sugi, Bing Han, Tere Williams, Yanfen Ma, Louis M. Weiss
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2018.00755

The Membrane-Bound C Subunit of Reductive Dehalogenases: Topology Analysis and Reconstitution of the FMN-Binding Domain of PceC
Cited by: 19
Author(s): Géraldine Florence Buttet, Mathilde Stéphanie Willemin, Romain Hamelin, Aamani Rupakula, Julien Maillard
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2019.00384

Mixotrophic Growth Under Micro-Oxic Conditions in the Purple Sulfur Bacterium “Thiodictyon syntrophicum”
Cited by: 14
Author(s): Samuel M. Luedin, Nicola Storelli, Francesco Danza, Samuele Roman, Matthias Wittwer, Joël F. Pothier, Mauro Tonolla
Software Mentions: 2
Published: over 7 years ago

10.1128/mSystems.01095-20

Single-Cell RNA Sequencing Reveals that the Switching of the Transcriptional Profiles of Cysteine-Related Genes Alters the Virulence of Entamoeba histolytica
Cited by: 4
Author(s): Min Feng, Yuhan Zhang, Hang Zhou, Xia Li, Yongfeng Fu, Hiroshi Tachibana, Xunjia Cheng
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00397-21

The DNA Sensor IFIX Drives Proteome Alterations To Mobilize Nuclear and Cytoplasmic Antiviral Responses, with Its Acetylation Acting as a Localization Toggle
Cited by: 8
Author(s): Timothy R. Howard, Marni S. Crow, Todd M. Greco, Krystal K. Lum, Tuo Li, Ileana M. Cristea
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2020.01227

Impact of Different Trace Elements on the Growth and Proteome of Two Strains of Granulicella, Class “Acidobacteriia”
Cited by: 14
Author(s): Ohana Y.A. Costa, Chidinma Oguejiofor, Daniela Zühlke, Cristine Chaves Barreto, Christine Wünsche, Katharina Riedel, Eiko E. Kuramae
Software Mentions: 2
Published: about 6 years ago

10.3389/fbioe.2020.00882

Cell Reprogramming With CRISPR/Cas9 Based Transcriptional Regulation Systems
Cited by: 26
Author(s): K. M. Shakirova, Viktoriia Y. Ovchinnikova, Э. Б. Дашинимаев
Software Mentions: 2
Published: about 6 years ago

10.3389/fnmol.2018.00243

Use of Proteomic Imaging Coupled With Transcriptomic Analysis to Identify Biomolecules Responsive to Cochlear Injury
Cited by: 2
Author(s): Kenyaria V. Noble, Michelle L. Reyzer, Jeremy L. Barth, Hayes McDonald, Michael Tuck, Kevin L. Schey, Edward L. Krug, Hainan Lang
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0021991

A Novel Role of Protein Tyrosine Kinase2 in Mediating Chloride Secretion in Human Airway Epithelial Cells
Cited by: 7
Author(s): Lianchun Liang, Owen M. Woodward, Zhaohui Chen, Robert J. Cotter, William B. Guggino
Software Mentions: 2
Published: about 15 years ago

10.3390/cells8020192

In-Depth Proteome Analysis Highlights HepaRG Cells as a Versatile Cell System Surrogate for Primary Human Hepatocytes
Cited by: 35
Author(s): Georg Tascher, Audrey Burban, Sandrine Camus, Marine Plumel, Stéphanie Chanon, Rémy Le Guével, В. П. Шевченко, Alain Van Dorsselaer, Étienne Lefai, Christiane Guguen‐Guillouzo, Fabrice Bertile
Software Mentions: 2
Published: over 7 years ago

10.3390/cells7120269

Proteogenomic Analysis of Burkholderia Species Strains 25 and 46 Isolated from Uraniferous Soils Reveals Multiple Mechanisms to Cope with Uranium Stress
Cited by: 15
Author(s): Meenakshi Agarwal, Ashish Pathak, Rajesh Rathore, Om Prakash, Rakesh Singh, Rajneesh Jaswal, John C. Seaman, Ashvini Chauhan
Software Mentions: 2
Published: almost 8 years ago

10.3389/fneur.2018.00465

Environmental Enrichment Upregulates Striatal Synaptic Vesicle-Associated Proteins and Improves Motor Function
Cited by: 6
Author(s): Suk Young Song, Minji Chae, Ji Hea Yu, Min Young Lee, Soonil Pyo, Yeseul Shin, Ahreum Baek, Jung Won Park, Eun Sook Park, Ja Young Choi, Sung Rae Cho
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0208352

Characterization of longitudinal canal tissue in the acorn barnacle Amphibalanus amphitrite
Cited by: 8
Author(s): Chenyue Wang, Janna N. Schultzhaus, Chris R. Taitt, Dagmar H. Leary, Lisa C. Shriver‐Lake, Daniel A. Snellings, Samantha L Sturiale, Stella H. North, Beatriz Orihuela, Daniel Rittschof, Kathryn J. Wahl, Christopher M. Spillmann
Software Mentions: 2
Published: almost 8 years ago

10.3389/fnut.2020.583397

Bifidobacterium infantis Metabolizes 2′Fucosyllactose-Derived and Free Fucose Through a Common Catabolic Pathway Resulting in 1,2-Propanediol Secretion
Cited by: 18
Author(s): Liv R Dedon, Ezgi Özcan, Asha Rani, David A. Sela
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0186840

Chemical crosslinking and mass spectrometry to elucidate the topology of integral membrane proteins
Cited by: 11
Author(s): Mykhaylo O. Debelyy, Patrice Waridel, Manfredo Quadroni, Roger Schneiter, Andreas Conzelmann
Software Mentions: 2
Published: almost 9 years ago

10.3390/jof6030148

Proteomic and Transcriptomic Analyses Indicate Metabolic Changes and Reduced Defense Responses in Mycorrhizal Roots of Oeceoclades maculata (Orchidaceae) Collected in Nature
Cited by: 12
Author(s): Rafael Borges da Silva Valadares, Silvia Perotto, Adriano Reis Lucheta, Eder C. Santos, Renato R. M. Oliveira, Márcio Rodrigues Lambais
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0004501

Two Chromogranin A-Derived Peptides Induce Calcium Entry in Human Neutrophils by Calmodulin-Regulated Calcium Independent Phospholipase A2
Cited by: 87
Author(s): Dandan Zhang, Peiman Shooshtarizadeh, Benoît‐Joseph Laventie, Didier Colin, Jean-François Chich, Jasmina Vidić, Jean de Barry, Sylvette Chasserot‐Golaz, François Delalande, Alain Van Dorsselaer, Francis Schneider, Karen B. Helle, Dominique Aunis, Gilles Prévost, Marie‐Hélène Metz‐Boutigue
Software Mentions: 2
Published: over 17 years ago

10.1371/journal.pone.0100263

Insight into PreImplantation Factor (PIF*) Mechanism for Embryo Protection and Development: Target Oxidative Stress and Protein Misfolding (PDI and HSP) through Essential RIPK Binding Site
Cited by: 30
Author(s): Eytan R. Barnea, David M. Lubman, Yan Hui Liu, V. Absalon-Medina, Soren Hayrabedyan, Krassimira Todorova, R.O. Gilbert, Joy Guingab, Timothy J. Barder
Software Mentions: 2
Published: about 12 years ago

10.1007/s00535-021-01802-2

Alteration of protein expression and spliceosome pathway activity during Barrett’s carcinogenesis
Cited by: 1
Author(s): Christoph Stingl, Angela Bureo Gonzalez, Coşkun Güzel, Kai Yi N. Phoa, Michail Doukas, Gerben E. Breimer, Sybren L. Meijer, Jacques Bergman, Theo M. Luider
Software Mentions: 2
Published: about 5 years ago

10.1099/jgv.0.001607

Identification of protein interactions of grapevine fanleaf virus RNA-dependent RNA polymerase during infection of Nicotiana benthamiana by affinity purification and tandem mass spectrometry
Cited by: 2
Author(s): Larissa J. Osterbaan, Victoria Hoyle, Michelle Curtis, Stacy L. DeBlasio, Keith Rivera, Michelle Heck, Marc Fuchs
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2020.01784

Effects of the Oncoprotein PAX3-FOXO1 on Modulation of Exosomes Function and Protein Content: Implications on Oxidative Stress Protection and Enhanced Plasticity
Cited by: 3
Author(s): Assil Fahs, Farah Ramadan, Farah Ghamloush, Abeer J. Ayoub, Ahmad Faraz, Firas Kobeissy, Yehia Mechref, Jingkun Zhao, Rui Zhu, Nader Hussein, Raya Saab, Sandra E. Ghayad
Software Mentions: 2
Published: almost 6 years ago

10.3389/fonc.2020.557737

Down-Regulation of Collagen Hydroxylation in Colorectal Liver Metastasis
Cited by: 3
Author(s): Nick A. van Huizen, Peter C. Burgers, Joost van Rosmalen, Michail Doukas, Jan N.M. IJzermans, Theo M. Luider
Software Mentions: 2
Published: almost 6 years ago

10.3389/fcell.2021.634355

Recovery of Depleted miR-146a in ALS Cortical Astrocytes Reverts Cell Aberrancies and Prevents Paracrine Pathogenicity on Microglia and Motor Neurons
Cited by: 20
Author(s): Marta Barbosa, Cátia Gomes, Catarina Sequeira, Joana Gonçalves-Ribeiro, Carolina Campos Pina, Luís A. R. Carvalho, Rui Moreira, Sandra H. Vaz, Ana Rita Vaz, Dora Brites
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0015004

Aptamer-Based Multiplexed Proteomic Technology for Biomarker Discovery
Cited by: 1,153
Author(s): Larry Gold, Deborah Ayers, Jennifer Bertino, C. Bock, Ashley Bock, Edward N. Brody, Jeff Carter, Andrew B. Dalby, Bruce E. Eaton, Tim Fitzwater, Dylan Flather, Ashley Forbes, Trudi Foreman, Cate Fowler, Bharat Gawande, Meredith Goss, Magda Gunn, Shashi Gupta, Dennis Halladay, Jim Heil, Joe Heilig, Brian J. Hicke, Gregory M. Husar, Nebojša Janjić, Thale C. Jarvis, Susan D. Jennings, Evaldas Katilius, Tracy R. Keeney, Nancy Kim, Tad H. Koch, Stephan Kräemer, Luke Kroiss, Ngan Le, Daniel M. Levine, Wes Lindsey, Bridget Lollo, Wes Mayfield, Mike Mehan, Robert Mehler, Sally K. Nelson, Michele Nelson, Dan Nieuwlandt, Malti Nikrad, Urs A. Ochsner, Rachel Ostroff, Matt Otis, Thomas S. Parker, Steve Pietrasiewicz, Daniel I. Resnicow, John C. Rohloff, Glenn M. Sanders, Sarah Sattin, Daniel J. Schneider, Britta Swebilius Singer, Martin Stanton, Alana Sterkel, A. Keith Stewart, Suzanne Stratford, Jonathan D. Vaught, Mike Vrkljan, Jeffrey J. Walker, Mike Watrobka, Sheela Waugh, Allison Weiss, Sheri K. Wilcox, Alexey D. Wolfson, Steven K. Wolk, Chi Zhang, Dom Zichi
Software Mentions: 2
Published: almost 16 years ago

10.3389/fcell.2020.00700

Tubular ER Associates With Diacylglycerol-Rich Structures During Lipid Droplet Consumption
Cited by: 4
Author(s): Suriakarthiga Ganesan, Marjan Tavassoli, Brittney Shabits, Vanina Zaremberg
Software Mentions: 2
Published: about 6 years ago

10.1155/2013/581862

iTRAQ-Based and Label-Free Proteomics Approaches for Studies of Human Adenovirus Infections
Cited by: 62
Author(s): Hung V. Trinh, Jonas Grossmann, Peter Gehrig, Bernd Roschitzki, Ralph Schlapbach, Urs F. Greber, Silvio Hemmi
Software Mentions: 2
Published: over 13 years ago

10.1186/1559-0275-11-23

Deciphering the peptidome of urine from ovarian cancer patients and healthy controls
Cited by: 36
Author(s): Christopher R. Smith, Ihor Batruch, Josep Miquel Bauça, Hari Kosanam, Julia Ridley, Marcus Q. Bernardini, Felix Leung, Eleftherios P. Diamandis, Vathany Kulasingam
Software Mentions: 2
Published: over 12 years ago

10.1155/2013/293782

Proteomic Analysis and Label-Free Quantification of the Large Clostridium difficile Toxins
Cited by: 17
Author(s): Hércules Moura, Rebecca R. Terilli, Adrian R. Woolfitt, Yulanda M. Williamson, Glauber Wagner, Thomas A. Blake, Maria I. Solano, John R. Barr
Software Mentions: 2
Published: about 13 years ago

10.3389/fcell.2020.616706

Identification of the Myogenetic Oligodeoxynucleotides (myoDNs) That Promote Differentiation of Skeletal Muscle Myoblasts by Targeting Nucleolin
Cited by: 11
Author(s): Sayaka Shinji, Koji Umezawa, Yuma Nihashi, Shun‐ichi Nakamura, Takeshi Shimosato, Tomohide Takaya
Software Mentions: 2
Published: over 5 years ago

10.3389/fphys.2015.00039

Dissection of the radical reactions linked to fetal hemoglobin reveals enhanced pseudoperoxidase activity
Cited by: 31
Author(s): Khuanpiroon Ratanasopa, Michael Brad Strader, Abdu I. Alayash, Leif Bülow
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0185125

Biochemical and biomechanical properties of the pacemaking sinoatrial node extracellular matrix are distinct from contractile left ventricular matrix
Cited by: 19
Author(s): Jessica M. Gluck, Anthony W. Herren, Sergey Yechikov, Hillary K.J. Kao, Ambereen Khan, Brett S. Phinney, Nipavan Chiamvimonvat, James W. Chan, Deborah K. Lieu
Software Mentions: 2
Published: almost 9 years ago

10.1016/j.dib.2015.02.013

Supporting data for comparative proteomic analysis of Listeria monocytogenes ATCC 7644 exposed to a sublethal concentration of nisin
Cited by: 0
Author(s): Kendi Nishino Miyamoto, Karina Mariante Monteiro, Karin da Silva Caumo, Karina Rodrigues Lorenzatto, Henrique Bunselmeyer Ferreira, Adriano Brandelli
Software Mentions: 2
Published: over 11 years ago

10.3389/fphys.2017.00793

Integrative Temporo-Spatial, Mineralogic, Spectroscopic, and Proteomic Analysis of Postnatal Enamel Development in Teeth with Limited Growth
Cited by: 8
Author(s): Mirali Pandya, Hui Liu, Smit Dangaria, Weiying Zhu, Leo L. Li, Shuang Pan, Moufida Abufarwa, Roderick G. Davis, Stephen Guggenheim, Timothy A. Keiderling, Xianghong Luan, Thomas G.H. Diekwisch
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0018497

A Mighty Small Heart: The Cardiac Proteome of Adult Drosophila melanogaster
Cited by: 81
Author(s): Anthony Cammarato, Christian H. Ahrens, Nakissa N. Alayari, Ermir Qeli, Jasma Rucker, Mary C. Reedy, Christian M. Zmasek, Marjan Guček, Robert N. Cole, Jennifer E. Van Eyk, Rolf Bodmer, Brian O’Rourke, Sanford I. Bernstein, D. Brian Foster
Software Mentions: 2
Published: over 15 years ago

10.3389/fpls.2019.01657

A LysR-Type Transcriptional Regulator LcrX Is Involved in Virulence, Biofilm Formation, Swimming Motility, Siderophore Secretion, and Growth in Sugar Sources in Xanthomonas axonopodis Pv. glycines
Cited by: 14
Author(s): Hanbi Park, Eunsoo Do, Minyoung Kim, Hye-Jee Park, Jong-Chan Lee, Sang-Wook Han
Software Mentions: 2
Published: over 6 years ago

10.3389/fpls.2017.01134

Proteomics Coupled with Metabolite and Cell Wall Profiling Reveal Metabolic Processes of a Developing Rice Stem Internode
Cited by: 13
Author(s): Fan Lin, Brad J. Williams, Padmavathi A V Thangella, Adam Ladak, Athena Schepmoes, Hernando J. Olivos, Kangmei Zhao, Stephen Callister, Laura E. Bartley
Software Mentions: 2
Published: about 9 years ago

10.3389/fpls.2018.00818

Proteomic Profiling and Epitope Analysis of the Complex α-, γ-, and ω-Gliadin Families in a Commercial Bread Wheat
Cited by: 12
Author(s): Kyoungwon Cho, Hye-Rang Beom, You-Ran Jang, Susan B. Altenbach, William H. Vensel, Annamaria Simon-Buss, Sung-Hun Lim, Min Kim, Jong-Yeol Lee
Software Mentions: 2
Published: about 8 years ago

10.1016/j.dib.2014.09.006

Data set for the proteomic inventory and quantitative analysis of chicken uterine fluid during eggshell biomineralization
Cited by: 12
Author(s): Pauline Marie, Valérie Labas, Aurélien Brionne, Grégoire Harichaux, Christelle Hennequet-Antier, Yves Nys, Joël Gautron
Software Mentions: 2
Published: almost 12 years ago

10.1371/journal.pone.0037034

Comparative Proteomic Analysis of Aedes aegypti Larval Midgut after Intoxication with Cry11Aa Toxin from Bacillus thuringiensis
Cited by: 48
Author(s): Angeles Cancino-Rodezno, Luis Lozano, Cris Oppert, Julieta Ivonne Castro, Humberto Lánz-Mendoza, Sergio Encarnación, Amy Evans, Sarjeet S. Gill, Mário Soberón, Juan Luís Jurat-Fuentes, Alejandra Bravo
Software Mentions: 2
Published: over 14 years ago

10.3389/fcimb.2021.724569

An Innovative Protocol for Metaproteomic Analyses of Microbial Pathogens in Cystic Fibrosis Sputum
Cited by: 6
Author(s): Alexander C. Graf, Johanna Striesow, Jan Pané‐Farré, Thomas Sura, Martina Wurster, Michael Lalk, Dietmar H. Pieper, Dörte Becher, Barbara C. Kahl, Katharina Riedel
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0136362

Proteins with Intrinsically Disordered Domains Are Preferentially Recruited to Polyglutamine Aggregates
Cited by: 30
Author(s): Maggie P. Wear, Dmitry Kryndushkin, Robert N. O’Meally, Jason L. Sonnenberg, Robert N. Cole, Frank Shewmaker
Software Mentions: 2
Published: about 11 years ago

10.1186/s12014-019-9228-2

Rapid detection of colistin resistance protein MCR-1 by LC–MS/MS
Cited by: 11
Author(s): Honghui Wang, Yong Chen, Jeffrey R Strich, Steven K. Drake, Jung Ho Youn, Avi Z. Rosenberg, Marjan Guček, Patrick T. McGann, Anthony F. Suffredini, John P. Dekker
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0156543

A Large and Phylogenetically Diverse Class of Type 1 Opsins Lacking a Canonical Retinal Binding Site
Cited by: 11
Author(s): Erin Becker, Andrew I. Yao, Phillip Seitzer, Tobias Kind, Ting Wang, Rich Eigenheer, Katie S. Y. Shao, Vladimir Yarov‐Yarovoy, Marc T. Facciotti
Software Mentions: 2
Published: about 10 years ago

10.1093/database/bav056

Inconsistencies in the red blood cell membrane proteome analysis: generation of a database for research and diagnostic applications
Cited by: 24
Author(s): Tamás Hegedűs, Pururawa Mayank Chaubey, György Várady, Edit Szabó, Hajnalka Sarankó, Lia Hofstetter, Bernd Roschitzki, Bruno Stieger, Balázs Sarkadi
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0026542

A Metaproteomic Approach to Study Human-Microbial Ecosystems at the Mucosal Luminal Interface
Cited by: 73
Author(s): Xiaoxiao Li, James F. LeBlanc, Amy Truong, Ravi Vuthoori, Sharon S. Chen, Jonathan L. Lustgarten, Bennett E. Roth, Jeff Allard, Andrew Ippoliti, Laura L. Presley, James Borneman, William L. Bigbee, Vanathi Gopalakrishnan, Thomas G. Graeber, David Elashoff, Jonathan Braun, Lee Goodglick
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0040695

Integrated Metabolo-Proteomic Approach to Decipher the Mechanisms by Which Wheat QTL (Fhb1) Contributes to Resistance against Fusarium graminearum
Cited by: 212
Author(s): Raghavendra Gunnaiah, Ajjamada C. Kushalappa, Raj Duggavathi, S. L. Fox, Daryl J. Somers
Software Mentions: 2
Published: about 14 years ago

10.1242/dev.185421

Ykt6-dependent endosomal recycling is required for Wnt secretion in the Drosophila wing epithelium
Cited by: 13
Author(s): Karen Linnemannstöns, Leonie Witte, Pradhipa Karuna, Jeanette Clarissa Kittel, Adi Danieli, Denise Madeddu, Lena Nitsch, Mona Honemann‐Capito, Ferdi Grawe, Andreas Wodarz, Julia Christina Gross
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0007050

Barrier-to-Autointegration Factor Proteome Reveals Chromatin-Regulatory Partners
Cited by: 93
Author(s): Rocío Montes de, Christopher J. Shoemaker, Marjan Guček, Robert N. Cole, Katherine L. Wilson
Software Mentions: 2
Published: almost 17 years ago

10.1038/s41598-020-66286-1

A new brilliantly blue-emitting luciferin-luciferase system from Orfelia fultoni and Keroplatinae (Diptera)
Cited by: 16
Author(s): Vadim R. Viviani, Jaqueline R. Silva, Danilo T. Amaral, Vanessa R. Bevilaqua, Fábio Camargo Abdalla, Bruce R. Branchini, Carl Hirschie Johnson
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0218360

Candida utilis yeast as a functional protein source for Atlantic salmon (Salmo salar L.): Local intestinal tissue and plasma proteome responses
Cited by: 14
Author(s): Felipe Eduardo Reveco-Urzua, Mette Hofossæter, Mallikarjuna Rao Kovi, Liv Torunn Mydland, Ragnhild Ånestad, Randi Sørby, Charles McL. Press, Leidy Lagos, Margareth Øverland
Software Mentions: 2
Published: over 6 years ago

10.3389/fevo.2019.00085

Alternative Transcription at Venom Genes and Its Role as a Complementary Mechanism for the Generation of Venom Complexity in the Common House Spider
Cited by: 13
Author(s): Robert A. Haney, Taylor Matte, FitzAnthony S. Forsyth, Jessica E. Garb
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-68985-1

A benzimidazole inhibitor attenuates sterile inflammation induced in a model of systemic autoinflammation in female mice
Cited by: 4
Author(s): Federica Agliano, Keaton Karlinsey, Michael Ragazzi, Antoine Ménoret, Anthony T. Vella
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0018724

Temperature-Induced Protein Secretion by Leishmania mexicana Modulates Macrophage Signalling and Function
Cited by: 84
Author(s): Kasra Hassani, Elisabeth Antoniak, Armando Jardim, Martin Olivier
Software Mentions: 2
Published: over 15 years ago

10.1038/s41598-020-70010-4

The AAA + ATPase valosin-containing protein (VCP)/p97/Cdc48 interaction network in Leishmania
Cited by: 3
Author(s): Bruno Aguiar, Carole Dumas, Halim Maaroufi, Prasad K. Padmanabhan, Barbara Papadopoulou
Software Mentions: 2
Published: about 6 years ago

10.15252/embj.201798714

Evidence for the nuclear import of histones H3.1 and H4 as monomers
Cited by: 39
Author(s): Michael James Apta‐Smith, Juan R. Hernández-Fernaud, Andrew Bowman
Software Mentions: 2
Published: about 8 years ago

10.3389/fimmu.2014.00067

Pancreatic Cancer Cells Isolated from Muc1-Null Tumors Favor the Generation of a Mature Less Suppressive MDSC Population
Cited by: 11
Author(s): Amritha Kidiyoor, Jorge Schettini, Dahlia M. Besmer, Stephen L. Rego, Sritama Nath, Jennifer M. Curry, Lopamudra Das Roy, Didier Dréau, Pinku Mukherjee
Software Mentions: 2
Published: over 12 years ago

10.3389/fimmu.2021.625649

Complement-Opsonized HIV Modulates Pathways Involved in Infection of Cervical Mucosal Tissues: A Transcriptomic and Proteomic Study
Cited by: 2
Author(s): Cecilia Svanberg, Rada Ellegård, Elisa Crisci, Mohammad Khalid, Ninnie Borendal Wodlin, Maria Svenvik, Sofia Nyström, Kenzie Birse, Adam Burgener, Esaki M. Shankar, Marie Larsson
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-020-76052-y

Human perinatal stem cell derived extracellular matrix enables rapid maturation of hiPSC-CM structural and functional phenotypes
Cited by: 21
Author(s): Travis J. Block, Jeffery Creech, A.M. Rocha, Milos Marinkovic, Daniela Ponce-Balbuena, Eric N. Jiménez-Vázquez, Sy Griffey, Todd J. Herron
Software Mentions: 2
Published: almost 6 years ago

10.3389/fimmu.2021.621744

In Vitro Culture Expansion Shifts the Immune Phenotype of Human Adipose-Derived Mesenchymal Stem Cells
Cited by: 25
Author(s): Richard Jeske, Xuegang Yuan, Qin Fu, Bruce A. Bunnell, Timothy M. Logan, Yan Li
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2017.00358

Human Melanoma-Derived Extracellular Vesicles Regulate Dendritic Cell Maturation
Cited by: 44
Author(s): Rachel L.G. Maus, James W. Jakub, Wendy K. Nevala, Trace Christensen, Klara E. Noble-Orcutt, Zohar Sachs, Tina J. Hieken, Svetomir N. Markovic
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-020-77346-x

Acute pathophysiological myocardial changes following intra-cardiac electrical shocks using a proteomic approach in a sheep model
Cited by: 4
Author(s): Alexandre Bodin, Valérie Labas, Arnaud Bisson, Ana-Paula Teixeira-Gomes, Hélène Blasco, Daniel Tomas, Lucie Combes‐Soia, Paulo Marcelo, Élodie Miquelestorena-Standley, Christophe Baron, Denis Angoulvant, Dominique Babuty, Nicolas Clémenty
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0134014

Flux Balance Analysis with Objective Function Defined by Proteomics Data—Metabolism of Mycobacterium tuberculosis Exposed to Mefloquine
Cited by: 21
Author(s): Daniel Montezano, Laura Meek, Rashmi Gupta, Luiz E. Bermudez, J.C.M. Bermudez
Software Mentions: 2
Published: about 11 years ago

10.1038/s41598-020-79545-y

Surface hydrophobics mediate functional dimerization of CYP121A1 of Mycobacterium tuberculosis
Cited by: 5
Author(s): Amit Kumar, Christopher S. Campomizzi, Natalie Jay, Shaun Ferguson, Emelie‐Jo Scheffler, James Lioi, Chengjian Tu, Jun Qu, Claire Simons, D. Fernando Estrada
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-83395-7

A Casz1–NuRD complex regulates temporal identity transitions in neural progenitors
Cited by: 15
Author(s): Pierre Mattar, Christine Jolicoeur, Dang Thanh Chung, Sujay Shah, Brian S. Clark, Michel Cayouette
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-86284-1

Ibuprofen alters epoxide hydrolase activity and epoxy-oxylipin metabolites associated with different metabolic pathways in murine livers
Cited by: 4
Author(s): Shuchita Tiwari, Jun Yang, Christophe Morisseau, Blythe Durbin‐Johnson, Bruce D. Hammock, Aldrin V. Gomes
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0080737

PRICKLE1 Interaction with SYNAPSIN I Reveals a Role in Autism Spectrum Disorders
Cited by: 37
Author(s): Lily Paemka, Vinit B. Mahajan, Jessica M. Skeie, Levi P. Sowers, Salleh N. Ehaideb, Pedro González-Alegre, Toshikuni Sasaoka, Hirotaka Tao, Asuka Miyagi, Naoto Ueno, Keizo Takao, Tsuyoshi Miyakawa, Shu Wu, Benjamin W. Darbro, Polly J. Ferguson, Andrew A. Pieper, Jeremiah K. Britt, John A. Wemmie, Danielle S. Rudd, Thomas H. Wassink, Hatem El‐Shanti, Heather C Mefford, Gemma L. Carvill, J. Robert Manak, Alexander G. Bassuk
Software Mentions: 2
Published: almost 13 years ago

10.1186/s12014-017-9172-y

A proteomic approach to understanding the pathogenesis of idiopathic macular hole formation
Cited by: 10
Author(s): Pingbo Zhang, Mingyan Zhu, Yuming Zhao, Jiang Qian, Craig Dufresne, Randi Turner, Richard D. Semba, Sharon D. Solomon
Software Mentions: 2
Published: almost 9 years ago

10.1038/s41598-021-89907-9

Continual proteomic divergence of HepG2 cells as a consequence of long-term spheroid culture
Cited by: 2
Author(s): Andrea Antonio Ellero, Iman van den Bout, Maré Vlok, Allan Duncan Cromarty, Tracey Hurrell
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-021-91756-5

Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives
Cited by: 4
Author(s): Mana Iwata, Ana Gutiérrez, Gisela Marques, Grzegorz Sabat, Philip J. Kersten, Daniel Cullen, Jennifer M. Bhatnagar, J. S. Yadav, Anna Lipzen, Yuko Yoshinaga, Aarti Sharma, Catherine Adam, Christopher Daum, Vivian Ng, Igor V. Grigoriev, Chiaki Hori
Software Mentions: 2
Published: about 5 years ago

10.15252/embr.201744807

<scp>PAWS</scp> 1 controls Wnt signalling through association with casein kinase 1α
Cited by: 24
Author(s): Polyxeni Bozatzi, Kevin S. Dingwell, Kevin Z. L. Wu, Fay Cooper, Timothy D. Cummins, Luke D. Hutchinson, J. Vogt, Nicola T. Wood, Thomas Macartney, Joby Varghese, Robert Gourlay, David G. Campbell, James C. Smith, Gopal P. Sapkota
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-021-92931-4

Overlapping regions of Caf20 mediate its interactions with the mRNA-5′cap-binding protein eIF4E and with ribosomes
Cited by: 4
Author(s): Ebelechukwu C. Nwokoye, Eiman AlNaseem, Robert A. Crawford, Lydia M. Castelli, Martin D. Jennings, Christopher J. Kershaw, Graham D. Pavitt
Software Mentions: 2
Published: about 5 years ago

10.1038/s41598-021-95060-0

Proteomic study of Desulfovibrio ferrophilus IS5 reveals overexpressed extracellular multi-heme cytochrome associated with severe microbiologically influenced corrosion
Cited by: 9
Author(s): Mohor Chatterjee, Yu Fan, Fang Cao, A. A. Jones, Giovanni Pilloni, Xiaozhou Zhang
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0119523

Experimental Study on Differences in Clivus Chordoma Bone Invasion: An iTRAQ-Based Quantitative Proteomic Analysis
Cited by: 16
Author(s): Zhen Wu, Liang Wang, Zhengguang Guo, Ke Wang, Yang Zhang, Kaibing Tian, Junting Zhang, Wei Sun, Chunmei Yu
Software Mentions: 2
Published: over 11 years ago

10.3389/fmed.2017.00080

Assessment of Circulating Protein Signatures for Kidney Transplantation in Pediatric Recipients
Cited by: 9
Author(s): Tara K. Sigdel, Minnie M. Sarwal
Software Mentions: 2
Published: about 9 years ago

10.1111/1462-2920.13930

Transcriptome and proteome dynamics in chemostat culture reveal howCampylobacter jejunimodulates metabolism, stress responses and virulence factors upon changes in oxygen availability
Cited by: 28
Author(s): Edward Guccione, John J. Kendall, Andrew Hitchcock, Nitanshu Garg, Michael A. White, Francis Mulholland, Robert K. Poole, David J. Kelly
Software Mentions: 2
Published: almost 9 years ago

10.3389/fmicb.2019.00330

Transcriptional and Proteomic Choreography Under Phosphorus Deficiency and Re-supply in the N2 Fixing Cyanobacterium Trichodesmium erythraeum
Cited by: 11
Author(s): Kyle R. Frischkorn, Sheean T. Haley, Sonya T. Dyhrman
Software Mentions: 2
Published: over 7 years ago

10.1038/s42003-019-0426-2

15-deoxy-Δ12,14-Prostaglandin J2 inhibits human soluble epoxide hydrolase by a dual orthosteric and allosteric mechanism
Cited by: 14
Author(s): Giancarlo Abis, Rebecca L. Charles, J. Kopec, Wyatt W. Yue, R. Andrew Atkinson, Tam T. Bui, Steven Lynham, Popova Sn, Yin-Biao Sun, Franca Fraternali, Philip Eaton, Maria R. Conte
Software Mentions: 2
Published: over 7 years ago

10.1186/s13072-016-0087-z

Pax6 associates with H3K4-specific histone methyltransferases Mll1, Mll2, and Set1a and regulates H3K4 methylation at promoters and enhancers
Cited by: 23
Author(s): Jian Sun, Yilin Zhao, Rebecca McGreal, Yamit Cohen‐Tayar, Shira Rockowitz, Carola Wilczek, Ruth Ashery‐Padan, David Shechter, Deyou Zheng, Aleš Cvekl
Software Mentions: 2
Published: about 10 years ago

10.7554/eLife.11155

Polypyrimidine tract binding protein 1 protects mRNAs from recognition by the nonsense-mediated mRNA decay pathway
Cited by: 112
Author(s): Zhiyun Ge, Bao Lin Quek, Karen Beemon, J. Robert Hogg
Software Mentions: 2
Published: over 10 years ago

10.1007/s12031-018-1206-z

Biomarker and Drug Target Discovery Using Quantitative Proteomics Post-Intracerebral Hemorrhage Stroke in the Rat Brain
Cited by: 16
Author(s): Shuixiang Deng, Sheng-Ya Feng, Wei Wang, Feng Zhao, Yi Gong
Software Mentions: 2
Published: almost 8 years ago

10.1128/MRA.01000-20

Telomere-to-Telomere Genome Assembly of Bursaphelenchus okinawaensis Strain SH1
Cited by: 6
Author(s): Simo Sun, Ryoji Shinya, Mehmet Dayı, Akemi Yoshida, Paul W. Sternberg, Taisei Kikuchi
Software Mentions: 2
Published: almost 6 years ago

10.1002/mbo3.218

Characterization of the bile and gall bladder microbiota of healthy pigs
Cited by: 45
Author(s): Esther Jiménez, Borja Sánchez, Annarita Farina, Abelardo Margollés, Juan M. Rodríguez
Software Mentions: 2
Published: almost 12 years ago

10.1038/s41598-019-55694-7

Molecular events in MSC exosome mediated cytoprotection in cardiomyocytes
Cited by: 15
Author(s): Rajshekhar A. Kore, J. Curran Henson, Rabab N. Hamzah, Robert J. Griffin, Alan J. Tackett, Zufeng Ding, Jawahar L. Mehta
Software Mentions: 2
Published: over 6 years ago

10.1186/s12866-019-1387-9

Functional characterization and proteomic analysis of lolA in Xanthomonas campestris pv. campestris
Cited by: 14
Author(s): Chao‐Tsai Liao, Ying-Chuan Chiang, Yi‐Min Hsiao
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-60619-w

Rigorous characterization of urinary extracellular vesicles (uEVs) in the low centrifugation pellet - a neglected source for uEVs
Cited by: 40
Author(s): Luca Musante, Sai Vineela Bontha, Sabrina La Salvia, Angela Fernandez-Piñeros, Joanne Lannigan, Thu H. Le, Valeria R. Mas, Uta Erdbrügger
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-53268-1

Elemental Zn and its Binding Protein Zinc-α2-Glycoprotein are Elevated in HPV-Positive Oropharyngeal Squamous Cell Carcinoma
Cited by: 8
Author(s): Kate Poropatich, Tatjana Paunesku, Alia Zander, Brian Wray, Matthew J. Schipma, Prarthana Dalal, Mark Agulnik, Si Chen, Barry Lai, Olga Antipova, Evan Maxey, Koshonna Brown, Michael Beau Wanzer, Demirkan Gursel, Hanli Fan, Alfred Rademaker, Gayle E. Woloschak, Bharat B. Mittal
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-019-38492-z

Animal species identification in parchments by light
Cited by: 8
Author(s): Ángel Martín Fernández Alvarez, Julie Bouhy, Marc Dieu, Cathérine Charles, Olivier Deparis
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-019-53984-8

Integrated Transcriptomics, Proteomics, and Glycomics Reveals the Association between Up-regulation of Sialylated N-glycans/Integrin and Breast Cancer Brain Metastasis
Cited by: 21
Author(s): Wenjing Peng, Rui Zhu, Shiyue Zhou, Parvin Mirzaei, Yehia Mechref
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-32530-y

The Cytotoxic Necrotizing Factor of Yersinia pseudotuberculosis (CNFy) is Carried on Extracellular Membrane Vesicles to Host Cells
Cited by: 14
Author(s): Ajay K. Monnappa, Wasimul Bari, Jeong Kon Seo, Robert J. Mitchell
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-018-29614-0

Quantitative Profiling of the Lymph Node Clearance Capacity
Cited by: 34
Author(s): Cristina C. Clement, Wei Wang, Monika Dzieciątkowska, Marco Cortese, Kirk C. Hansen, Aniuska Becerra, Sangeetha Thangaswamy, Irina Tsoy Nizamutdinova, Jee Young Moon, Lawrence J. Stern, Anatoliy A. Gashev, David C. Zawieja, Laura Santambrogio
Software Mentions: 2
Published: about 8 years ago

10.1038/s41598-018-34174-4

Analysis of the Trichuris suis excretory/secretory proteins as a function of life cycle stage and their immunomodulatory properties
Cited by: 36
Author(s): Louis‐Philippe Leroux, Mohamad Nasr, Rajesh M. Valanparambil, Mifong Tam, Bruce A. Rosa, E A Siciliani, Dolores E. Hill, Dante S. Zarlenga, Maritza Jaramillo, Joel V. Weinstock, Timothy G. Geary, Mary M. Stevenson, Joseph F. Urban, Makedonka Mitreva, Armando Jardim
Software Mentions: 2
Published: almost 8 years ago

10.1038/s41598-019-54618-9

Bacterial DNA induces the formation of heat-resistant disease-associated proteins in human plasma
Cited by: 9
Author(s): Victor Tetz, George Tetz
Software Mentions: 2
Published: almost 7 years ago

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