Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Scaffold

https://packages.ecosyste.ms/registries/pypi.org/packages/Scaffold

Simple project scaffolding for Python
5 versions
Latest release: about 1 year ago
343 downloads last month

Papers Mentioning Scaffold 1,866

10.1038/s41598-019-53248-5
Immunoproteomic analysis of Borrelia miyamotoi for the identification of serodiagnostic antigens
Cited by: 14
Author(s): Emma K. Harris, Marisa Harton, Maria Ângela de Mello Marques, John T. Belisle, Claudia R. Molins, Nicole E. Breuner, Gary P. Wormser, Robert D. Gilmore
Software Mentions: 1
Published: about 5 years ago
10.1038/s41598-019-53608-1
Novel redox-active enzymes for ligninolytic applications revealed from multiomics analyses of Peniophora sp. CBMAI 1063, a laccase hyper-producer strain
Cited by: 20
Author(s): Lívia Beatriz Brenelli, Gabriela Félix Persinoti, João Paulo L. Franco Cairo, M.V. Liberato, Thiago Augusto Gonçalves, Igor Vinicius Ramos Otero, Pedro Henrique Mainardi, Claus Felby, Lara Durães Sette, Fábio M. Squina
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-57663-x
Astrocyte Support for Oligodendrocyte Differentiation can be Conveyed via Extracellular Vesicles but Diminishes with Age
Cited by: 49
Author(s): Cory M. Willis, Alexandra M. Nicaise, Ernesto R. Bongarzone, Maria I. Givogri, Cory R. Reiter, Olivia Heintz, Evan R. Jellison, Pearl A. Sutter, Gregg TeHennepe, Guruprasad Ananda, Anthony T. Vella, Stephen J. Crocker
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-58067-7
Urinary peptidomics and bioinformatics for the detection of diabetic kidney disease
Cited by: 18
Author(s): Letícia de Almeida Brondani, Ariana Aguiar Soares, Mariana Recamonde‐Mendoza, Angélica Dall’Agnol, Joíza Lins Camargo, Karina Mariante Monteiro, Sandra Pinho Silveiro
Software Mentions: 1
Published: almost 5 years ago
10.1038/s41598-020-61417-0
Bacterioplankton reveal years-long retention of Atlantic deep-ocean water by the Tropic Seamount
Cited by: 7
Author(s): Greta Giljan, Nina A. Kamennaya, Andreas Otto, Dörte Becher, Andreas Ellrott, Volker Meyer, Bramley J. Murton, Bernhard M. Fuchs, Rudolf Amann, Mikhail V. Zubkov
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-61112-0
Discovery of a bacterial peptide as a modulator of GLP-1 and metabolic disease
Cited by: 18
Author(s): Catherine Tomaro-Duchesneau, Stephanie L. LeValley, Daniel Roeth, Liang Sun, Frank T. Horrigan, Markus Kalkum, Joseph M. Hyser, Robert A. Britton
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-61714-8
Human PZP and common marmoset A2ML1 as pregnancy related proteins
Cited by: 8
Author(s): Hirofumi Kashiwagi, Hitoshi Ishimoto, Sun-ichiro Izumi, Toshiro Seki, Rihito Kinami, Asako Otomo, Kohei Takahashi, Fuyuki Kametani, Noriaki Hirayama, Erika Sasaki, Takashi Shiina, Kou Sakabe, Mikio Mikami, Yoshie Kametani
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-61920-4
The Na/K-ATPase α1 and c-Src form signaling complex under native condition: A crosslinking approach
Cited by: 14
Author(s): Ying Nie, Fang Bai, Muhammad Anwar Chaudhry, Rebecca Pratt, Joseph I. Shapiro, Jiang Liu
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-63398-6
Oligomeric amyloid-β induces early and widespread changes to the proteome in human iPSC-derived neurons
Cited by: 17
Author(s): Christopher Sackmann, Martin Hallbeck
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-63669-2
CRISPR-mediated gene targeting of CK1δ/ε leads to enhanced understanding of their role in endocytosis via phosphoregulation of GAPVD1
Cited by: 8
Author(s): Rodrigo X. Guillen, Janel R. Beckley, Jun‐Song Chen, Kathleen L. Gould
Software Mentions: 1
Published: over 4 years ago
10.3390/ijms22168711
Proteomics of Mouse Heart Ventricles Reveals Mitochondria and Metabolism as Major Targets of a Post-Infarction Short-Acting GLP1Ra-Therapy
Cited by: 3
Author(s): Juliana de Freitas Germano, Ankush Sharma, Miroslava Šťastná, Cai Huang, Marianne Aniag, Angie Aceves, Jennifer E. Van Eyk, Robert M. Mentzer, Honit Piplani, Allen M. Andres, Roberta A. Gottlieb
Software Mentions: 1
Published: over 3 years ago
10.3390/ijms22189855
Impact of DICER1 and DROSHA on the Angiogenic Capacity of Human Endothelial Cells
Cited by: 3
Author(s): Heike Braun, Michael Hauke, Anne Ripperger, Christian Ihling, Matthew Fuszard, Robert Eckenstaler, Ralf A. Benndorf
Software Mentions: 1
Published: about 3 years ago
10.3390/ijms221910408
Peptide Location Fingerprinting Reveals Tissue Region-Specific Differences in Protein Structures in an Ageing Human Organ
Cited by: 8
Author(s): Alexander Eckersley, Matiss Ozols, Peikai Chen, Vivian Tam, Judith A. Hoyland, Andrew W. Trafford, Danny Chan, Michael J. Sherratt
Software Mentions: 1
Published: about 3 years ago
10.1186/1477-3155-8-31
The adsorption of biomolecules to multi-walled carbon nanotubes is influenced by both pulmonary surfactant lipids and surface chemistry
Cited by: 91
Author(s): Michael Gasser, Barbara Rothen‐Rutishauser, Harald F. Krug, Peter Gehr, Mathias Nelle, Bing Yan, Peter Wick
Software Mentions: 1
Published: almost 14 years ago
10.1007/s11481-018-9781-x
Tau Phosphorylation is Impacted by Rare AKAP9 Mutations Associated with Alzheimer Disease in African Americans
Cited by: 18
Author(s): Tsuneya Ikezu, Ci-Di Chen, Annina M. DeLeo, Ella Zeldich, M. Daniele Fallin, Nicholas M. Kanaan, Kathryn L. Lunetta, Carmela R. Abraham, Mark W. Logue, Lindsay A. Farrer
Software Mentions: 1
Published: over 6 years ago
10.1186/s12974-015-0240-9
The cerebrospinal fluid immunoglobulin transcriptome and proteome in neuromyelitis optica reveals central nervous system-specific B cell populations
Cited by: 43
Author(s): Markus C. Kowarik, Monika Dzieciątkowska, Scott Wemlinger, Alanna M. Ritchie, Bernhard Hemmer, Gregory P. Owens, Jeffrey L. Bennett
Software Mentions: 1
Published: almost 10 years ago
10.1007/s13365-020-00902-8
Neuroinflammation associates with antioxidant heme oxygenase-1 response throughout the brain in persons living with HIV
Cited by: 3
Author(s): Analise L. Gruenewald, Yoelvis García-Mesa, Alexander J. Gill, Rolando Garza, Benjamin B. Gelman, Dennis L. Kolson
Software Mentions: 1
Published: about 4 years ago
10.1016/j.isci.2020.101447
Alternative Splicing of a Receptor Intracellular Domain Yields Different Ectodomain Conformations, Enabling Isoform-Selective Functional Ligands
Cited by: 2
Author(s): Fouad Brahimi, Alba Galán, Sean Jmaeff, Pablo F. Barcelona, Nicolas Jay, Kurt Dejgaard, Jason C. Young, Claudia L. Kleinman, David Y. Thomas, H. Uri Saragovi
Software Mentions: 1
Published: about 4 years ago
10.1186/1757-2215-3-21
Leucine-rich alpha-2-glycoprotein-1 is upregulated in sera and tumors of ovarian cancer patients
Cited by: 90
Author(s): John D. Andersen, Kristin L.M. Boylan, Ronald Jemmerson, Melissa A. Geller, Benjamin S Misemer, Katherine M. Harrington, Starchild Weivoda, Bruce A. Witthuhn, Peter A. Argenta, Rachel Isaksson Vogel, Amy P.N. Skubitz
Software Mentions: 1
Published: about 14 years ago
10.18632/oncotarget.7445
Podoplanin is a component of extracellular vesicles that reprograms cell-derived exosomal proteins and modulates lymphatic vessel formation
Cited by: 64
Author(s): Patricia Carrasco-Ramírez, David W. Greening, Germán Andrés, Shashi K. Gopal, Ester Martín-Villar, Jaime Renart, Richard J. Simpson, Miguel Quintanilla
Software Mentions: 1
Published: almost 9 years ago
10.18632/oncotarget.11698
FAM122A, a new endogenous inhibitor of protein phosphatase 2A
Cited by: 24
Author(s): Li Fan, Man-Hua Liu, Meng Guo, Chuan-Xi Hu, Zhao-Wen Yan, Jing Chen, Guoqiang Chen, Ying Huang
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.12003
Evidence that vitronectin is a potent migration-enhancing factor for cancer cells chaperoned by fibrinogen: a novel view of the metastasis of cancer cells to low-fibrinogen lymphatics and body cavities
Cited by: 20
Author(s): Gabriela Schneider, Ewa Bryndza, Agata Poniewierska-Baran, Karol Serwin, Malwina Suszyńska, Zachariah Payne Sellers, Michael L. Merchant, Alagammai Kaliappan, Janina Ratajczak, Magda Kucia, Nichola C. Garbett, Mariusz Z. Ratajczak
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.12586
Mitotic arrest-induced phosphorylation of Mcl-1 revisited using two-dimensional gel electrophoresis and phosphoproteomics: nine phosphorylation sites identified
Cited by: 8
Author(s): Rong Chu, Sarah E. Alford, Katherine Hart, Anisha Kothari, Samuel G. Mackintosh, Matthew R. Kovak, Timothy C. Chambers
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.13341
Different non-synonymous polymorphisms modulate the interaction of the WRN protein to its protein partners and its enzymatic activities
Cited by: 3
Author(s): Jean-Philippe Gagné, Sophie Lachapelle, Chantal Garand, Serges P. Tsofack, Yan Coulombe, Marie-Christine Caron, Guy G. Poirier, Jean–Yves Masson, Michel Lebel
Software Mentions: 1
Published: about 8 years ago
10.18632/oncotarget.14964
Exosome secretome and mediated signaling in breast cancer patients with nontuberculous mycobacterial disease
Cited by: 15
Author(s): Julie V. Philley, Anbarasu Kannan, David E. Griffith, Megan S. Devine, Jeana L. Benwill, Richard J. Wallace, Barbara A. Brown‐Elliott, Foram Thakkar, Varsha Taskar, James G. Fox, Ammar Alqaid, Hernaina Bains, Sudeep Gupta, Santanu Dasgupta
Software Mentions: 1
Published: almost 8 years ago
10.18632/oncotarget.15184
Autophagy is highly targeted among host comparative proteomes during infection with different virulent RABV strains
Cited by: 9
Author(s): Ling Li, Hongli Jin, Hualei Wang, Zongjie Cao, Na Feng, Jianzhong Wang, Yongkun Zhao, Xiaodong Zheng, Pengfei Hou, Nan Li, Hang Chi, Pei Huang, Cuicui Jiao, Qian Li, Lina Wang, Tiecheng Wang, Wenzhao Sun, Yuwei Gao, Changchun Tu, Guang‐Wan Hu, Cuiling Wang, Xianzhu Xia
Software Mentions: 1
Published: almost 8 years ago
10.18632/oncotarget.17579
Proteomic analysis of cerebrospinal fluid from children with central nervous system tumors identifies candidate proteins relating to tumor metastatic spread
Cited by: 22
Author(s): Filippo Spreafico, Italia Bongarzone, Sara Pizzamiglio, R. Magni, Elena Taverna, Maida De Bortoli, Chiara Maura Ciniselli, Elena Barzanò, Veronica Biassoni, Alessandra Luchini, Lance A. Liotta, Weidong Zhou, Michele Signore, Paolo Verderio, Maura Massimino
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.11111
Modulation of paracrine signaling by CD9 positive small extracellular vesicles mediates cellular growth of androgen deprived prostate cancer
Cited by: 56
Author(s): Carolina Soekmadji, James D. Riches, Pamela J. Russell, Jayde E. Ruelcke, Stephen McPherson, Chenwei Wang, Christopher M. Hovens, Niall M. Corcoran, Michelle M. Hill, Colleen C. Nelson
Software Mentions: 1
Published: over 8 years ago
10.18632/oncotarget.18680
Endoplasmic reticulum aminopeptidase 2 involvement in metastasis of oral cavity squamous cell carcinoma discovered by proteome profiling of primary cancer cells
Cited by: 11
Author(s): I‐Chun Kuo, Huang‐Kai Kao, Yen‐Lin Huang, Chun-I Wang, Jui-Shan Yi, Ying Li, Chun‐Ta Liao, Tzu‐Chen Yen, Chih‐Ching Wu, Kai‐Ping Chang
Software Mentions: 1
Published: over 7 years ago
10.18632/oncotarget.21821
Identification of cellular genes and pathways important for tumorigenicity of hepatocellular carcinoma cell lines by proteomic profiling
Cited by: 3
Author(s): Ali Zamani, Huahao Fan, Guangxiang Luo
Software Mentions: 1
Published: about 7 years ago
10.18632/oncotarget.21985
Cell surface Thomsen-Friedenreich proteome profiling of metastatic prostate cancer cells reveals potential link with cancer stem cell-like phenotype
Cited by: 14
Author(s): Li Feng, Olga V. Glinskii, Brian Mooney, Kate Rittenhouse‐Olson, Kenneth J. Pienta, Vladislav V. Glinsky
Software Mentions: 1
Published: about 7 years ago
10.18632/oncotarget.20761
Comparison of <i>Echinococcus multilocularis</i> and <i>Echinococcus granulosus</i> hydatid fluid proteome provides molecular strategies for specialized host-parasite interactions
Cited by: 19
Author(s): Chuljin Ahn, Jeong‐Geun Kim, Xiumin Han, Insug Kang, Yoon Kong
Software Mentions: 1
Published: about 7 years ago
10.18632/oncotarget.23583
Proteomic profiling of antibody-inducing immunogens in tumor tissue identifies PSMA1, LAP3, ANXA3, and maspin as colon cancer markers
Cited by: 28
Author(s): Qian Yang, Michael H. A. Roehrl, Julia Y. Wang
Software Mentions: 1
Published: almost 7 years ago
10.18632/oncotarget.24183
Multi-chaperone function modulation and association with cytoskeletal proteins are key features of the function of AIP in the pituitary gland
Cited by: 26
Author(s): Laura C. Hernández-Ramírez, Rhodri M. L. Morgan, Sayka Barry, Fulvio D’Acquisto, Chrisostomos Prodromou, Márta Korbonits
Software Mentions: 1
Published: almost 7 years ago
10.18632/oncotarget.23951
Integrated analysis of fine-needle-aspiration cystic fluid proteome, cancer cell secretome, and public transcriptome datasets for papillary thyroid cancer biomarker discovery
Cited by: 18
Author(s): Chia‐Chun Wu, Jen‐Der Lin, Jeng-Ting Chen, Ching S. Chang, Hsiao‐Fen Weng, Chuen Hsueh, Hui‐Ping Chien, Jau‐Song Yu
Software Mentions: 1
Published: almost 7 years ago
10.18632/oncotarget.24773
Proteomic alterations in early stage cervical cancer
Cited by: 18
Author(s): Coşkun Güzel, Natalia Govorukhina, G. Bea A. Wisman, Christoph Stingl, Lennard J. M. Dekker, Harry G. Klip, Harry Hollema, Victor Guryev, Péter Horvatovich, Ate G.J. van der Zee, Rainer Bischoff, Theo M. Luider
Software Mentions: 1
Published: over 6 years ago
10.18632/oncotarget.25400
Cancer-related transcription regulator protein NAC1 forms a protein complex with CARM1 for ovarian cancer progression
Cited by: 13
Author(s): Naomi Nakayama, Gyosuke Sakashita, Yoshiki Nariai, Hiroaki Kato, Kaori Sinmyozu, Jun‐ichi Nakayama, Satoru Kyo, Takeshi Urano, Kentaro Nakayama
Software Mentions: 1
Published: over 6 years ago
10.18632/oncotarget.26063
Comparative proteomic analysis of cat eye syndrome critical region protein 1- function in tumor-associated macrophages and immune response regulation of glial tumors
Cited by: 6
Author(s): Changbin Zhu, Dana A. M. Mustafa, Merle M. Krebber, Ihsan Chrifi, Pieter J. M. Leenen, Dirk J. Duncker, Lennard J. M. Dekker, Theo M. Luider, Johan M. Kros, Caroline Cheng
Software Mentions: 1
Published: about 6 years ago
10.18632/oncotarget.26182
Exosomal survivin facilitates vesicle internalization
Cited by: 14
Author(s): Amber Gonda, Janviere Kabagwira, Girish N. Senthil, Heather R. Ferguson Bennit, Jonathan W. Neidigh, Sharmin Khan, Nathan R. Wall
Software Mentions: 1
Published: about 6 years ago
10.18632/oncotarget.26339
Correction: Proteomic screening identifies the zonula occludens protein ZO-1 as a new partner for ADAM12 in invadopodia-like structures
Cited by: 1
Author(s): Bassil Dekky, Michael W. Ruff, Dominique Bonnier, Vincent Legagneux, Nathalie Théret
Software Mentions: 1
Published: about 6 years ago
10.18632/oncotarget.26251
Drug-induced aneuploidy and polyploidy is a mechanism of disease relapse in MYC/BCL2-addicted diffuse large B-cell lymphoma
Cited by: 23
Author(s): Sameer Islam, Andrew L. Paek, Michael F. Hammer, Savithri Rangarajan, Robert Ruijtenbeek, Laurence Cooke, Eric Weterings, Daruka Mahadevan
Software Mentions: 1
Published: about 6 years ago
10.18632/oncotarget.26984
Functional interplay between YY1 and CARM1 promotes oral carcinogenesis
Cited by: 27
Author(s): Amit Behera, Manoj Kumar, Muthu K. Shanmugam, Aditya Bhattacharya, Vinay J. Rao, Akshay Bhat, Madavan Vasudevan, K. S. Gopinath, Azeem Mohiyuddin, Anupam Chatterjee, Gautam Sethi, Tapas K. Kundu
Software Mentions: 1
Published: over 5 years ago
10.18632/oncotarget.27192
GSTΠ stimulates caveolin-1-regulated polyamine uptake via actin remodeling
Cited by: 8
Author(s): Takeshi Uemura, George Tsaprailis, Eugene W. Gerner
Software Mentions: 1
Published: about 5 years ago
10.18632/oncotarget.27185
Malignant ascites: a source of therapeutic protein against ovarian cancer?
Cited by: 3
Author(s): Pascale Ribaux, Aurore Britan, Gabriele Thumann, Florence Delié, Patrick Petignat, Marie Cohen
Software Mentions: 1
Published: about 5 years ago
10.1016/j.jprot.2017.06.016
Increasing the accuracy of proteomic typing by decellularisation of amyloid tissue biopsies
Cited by: 14
Author(s): Palma Mangione, Giuseppe Mazza, Janet A. Gilbertson, Nigel B. Rendell, Diana Canetti, Sofia Giorgetti, Luca Frenguelli, Marco Curti, Tamer Rezk, Sara Raimondi, Mark B. Pepys, Philip N. Hawkins, Julian D. Gillmore, Graham W. Taylor, Massimo Pinzani, Vittorio Bellotti
Software Mentions: 1
Published: over 7 years ago
10.4172/jpb.1000214
High Fat Diet-Induced Changes in Hepatic Protein Abundance in Mice
Cited by: 14
Author(s): Moulun Luo, April Mengos, Tianna M. Stubblefield, Lawrence J. Mandarino
Software Mentions: 1
Published: almost 13 years ago
10.4172/jpb.1000317
Proteomics-Based Identification of Differentially Abundant Proteins from Human Keratinocytes Exposed to Arsenic Trioxide
Cited by: 19
Author(s): Udensi K. Udensi, Alan J. Tackett, Stephanie D. Byrum, Nathan L. Avaritt, Deepanwita Sengupta, Linley W Moreland, Paul B. Tchounwou, Raphael D. Isokpehi
Software Mentions: 1
Published: almost 11 years ago
10.4172/jpb.1000363
Novel Use of Proteomic Profiles in a Convex-Hull Ensemble Classifier to Predict Gynecological Cancer Patients? Susceptibility to Gastrointestinal Mucositis as Side Effect of Radiation Therapy
Cited by: 4
Author(s): Ralph L. Kodell, Randy S. Haun, Eric Siegel, Chuanlei Zhang, Angela B Trammel, Martin Hauer‐Jensen, Alexander Burnett
Software Mentions: 1
Published: almost 10 years ago
10.4172/2161-105X.1000241
Proteomic Profiling of Early Chronic Pulmonary Hypertension: Evidence for Both Adaptive and Maladaptive Pathology
Cited by: 5
Author(s): Abdulhameed Aziz, Anson M. Lee, Nneka N. Ufere, Ralph J. Damiano, R. Reid Townsend, Marc R. Moon
Software Mentions: 1
Published: almost 10 years ago
10.1098/rsob.150025
The external PASTA domain of the essential serine/threonine protein kinase PknB regulates mycobacterial growth
Cited by: 22
Author(s): Obolbek Turapov, Jessica Loraine, Christopher Jenkins, Philippe Barthe, Daniel McFeely, Francesca Forti, Daniela Ghisotti, Dušan Hesek, Mijoon Lee, Andrew R. Bottrill, Waldemar Vollmer, Shahriar Mobashery, Martin Cohen‐Gonsaud, Galina V. Mukamolova
Software Mentions: 1
Published: over 9 years ago
10.1098/rsob.150210
Post-translational processing targets functionally diverse proteins in <i>Mycoplasma hyopneumoniae</i>
Cited by: 48
Author(s): Jessica L. Tacchi, Benjamin B. A. Raymond, Paul A. Haynes, Iain J. Berry, Michael Widjaja, Daniel R. Bogema, Lauren K. Woolley, Cheryl Jenkins, F. Chris Minion, Matthew P. Padula, Steven P. Djordjevic
Software Mentions: 1
Published: almost 9 years ago
10.2174/1874364101711010107
Moxifloxacin Concentration and Proteomic Analysis of Aqueous Humor in Human Uveitis Associated with Oral Moxifloxacin Therapy
Cited by: 5
Author(s): David M. Hinkle, Nicole A. Kruh-Garcia, Jonathan N. Kruh, Carolyn J. Broccardo, Priyanka Doctor, C. Stephen Foster
Software Mentions: 1
Published: over 7 years ago
10.1111/jvim.16070
Light chain myeloma and detection of free light chains in serum and urine of dogs and cats
Cited by: 12
Author(s): R. Adam Harris, Matthew Miller, Dillon Donaghy, Laura V. Ashton, Catherine E. Langston, Todd Shockey, A Russell Moore
Software Mentions: 1
Published: over 3 years ago
10.1128/JVI.02049-20
Proximity Biotin Labeling Reveals Kaposi’s Sarcoma-Associated Herpesvirus Interferon Regulatory Factor Networks
Cited by: 7
Author(s): Ashish Kumar, Michelle Salemi, Resham Bhullar, Sara Guevara-Plunkett, Yuanzhi Lyu, Kang Hsin Wang, Chie Izumiya, Mel Campbell, Ken Nakajima, Yoshihiro Izumiya
Software Mentions: 1
Published: over 3 years ago
10.1128/JVI.00984-14
Host Factors That Interact with the Pestivirus N-Terminal Protease, N <sup>pro</sup> , Are Components of the Ribonucleoprotein Complex
Cited by: 21
Author(s): Matthew Jefferson, Andras Donaszi-Ivanov, Sean Pollen, Tamás Dalmay, Gerhard Saalbach, Penny P. Powell
Software Mentions: 1
Published: about 10 years ago
10.1128/JVI.01574-18
Acute Infection and Subsequent Subclinical Reactivation of Herpes Simplex Virus 2 after Vaginal Inoculation of Rhesus Macaques
Cited by: 10
Author(s): Ming Chu Lo, Jia Zhu, Scott G. Hansen, Timothy D. Carroll, Christina Farr Zuend, Laura Noël‐Romas, Min Zhong, Linda Fritts, Meei Li Huang, Sijie Sun, Ying Huang, David M. Koelle, Louis J. Picker, Adam Burgener, Lawrence Corey, Christopher J. Miller
Software Mentions: 1
Published: almost 6 years ago
10.1128/JVI.01492-16
Identification of Essential Genes in the Salmonella Phage SPN3US Reveals Novel Insights into Giant Phage Head Structure and Assembly
Cited by: 28
Author(s): Julie A. Thomas, Andrea Denisse Benítez Quintana, Martine A. Bosch, Adriana Coll De Peña, Elizabeth Aguilera, Assitan Coulibaly, Weimin Wu, Michael V. Osier, André O. Hudson, Susan T. Weintraub, Lindsay W. Black
Software Mentions: 1
Published: about 8 years ago
10.1186/1479-5876-9-188
Correspondence between salivary proteomic pattern and clinical course in primary Sjögren syndrome and non-Hodgkin's lymphoma: a case report
Cited by: 22
Author(s): Chiara Baldini, Laura Giusti, Federica Ciregia, Ylenia Da Valle, Camillo Giacomelli, Elena Donadio, Francesco Ferro, Sara Galimberti, Valentina Donati, Laura Bazzichi, Stefano Bombardieri, Antonio Lucacchini
Software Mentions: 1
Published: about 13 years ago
10.1186/1479-5876-11-243
A multidisciplinary approach to study a couple of monozygotic twins discordant for the chronic fatigue syndrome: a focus on potential salivary biomarkers
Cited by: 31
Author(s): Federica Ciregia, Laura Giusti, Ylenia Da Valle, Elena Donadio, Arianna Consensi, Camillo Giacomelli, Francesca Sernissi, P. Scarpellini, Fabrizio Maggi, Antonio Lucacchini, Laura Bazzichi
Software Mentions: 1
Published: about 11 years ago
10.1186/s12967-015-0712-9
Differential urinary glycoproteome analysis of type 2 diabetic nephropathy using 2D-LC–MS/MS and iTRAQ quantification
Cited by: 27
Author(s): Zhengguang Guo, Xuejiao Liu, Menglin Li, Chen Shao, Tao Jiang, Wei Sun, Mingxi Li
Software Mentions: 1
Published: almost 9 years ago
10.1155/2017/8398072
The Effects of Blast Exposure on Protein Deimination in the Brain
Cited by: 12
Author(s): Peter J. Attilio, Michael Flora, Alaa Kamnaksh, Donald J. Bradshaw, Denes V. Agoston, Gregory P. Mueller
Software Mentions: 1
Published: almost 8 years ago
10.1523/ENEURO.0144-18.2018
Transducin β-Subunit Can Interact with Multiple G-Protein γ-Subunits to Enable Light Detection by Rod Photoreceptors
Cited by: 7
Author(s): Paige M. Dexter, Ekaterina S. Lobanova, Stella Finkelstein, William J. Spencer, Nikolai P. Skiba, Vadim Y. Arshavsky
Software Mentions: 1
Published: over 6 years ago
10.1186/s12986-019-0418-8
CoQ10 enhances PGC1α and increases expression of mitochondrial antioxidant proteins in chronically ischemic swine myocardium
Cited by: 7
Author(s): Laura Hocum Stone, Erin Chappuis, Christin Wright, Rosemary F. Kelly, Edward O. McFalls
Software Mentions: 1
Published: almost 5 years ago
10.3390/nu12113404
Effects of High-Fat Diet Induced Obesity and Fructooligosaccharide Supplementation on Cardiac Protein Expression
Cited by: 2
Author(s): Sidra Sarfaraz, Shamjeet Singh, Aileen Hawke, Sandra Clarke, D. Dan Ramdath
Software Mentions: 1
Published: about 4 years ago
10.3390/nu9121341
A Novel Prebiotic Blend Product Prevents Irritable Bowel Syndrome in Mice by Improving Gut Microbiota and Modulating Immune Response
Cited by: 53
Author(s): Qian Chen, Yiping Ren, Jing Lü, Mark Bartlett, Lei Chen, Yan Zhang, Xiaokui Guo, Chang Liu
Software Mentions: 1
Published: almost 7 years ago
10.3389/fcell.2021.640667
Structural and Functional Characterization of Fibronectin in Extracellular Vesicles From Hepatocytes
Cited by: 11
Author(s): Xinlei Li, Ruju Chen, Sherri Kemper, David R. Brigstock
Software Mentions: 1
Published: over 3 years ago
10.3390/nu12030749
Comparison of Omega-3 Eicosapentaenoic Acid Versus Docosahexaenoic Acid-Rich Fish Oil Supplementation on Plasma Lipids and Lipoproteins in Normolipidemic Adults
Cited by: 22
Author(s): Yang Zhihong, Marcelo Amar, Maureen Sampson, Amber B. Courville, Alexander V. Sorokin, Scott M. Gordon, Angel Aponte, Michael Stagliano, Martin P. Playford, Yi-Ping Fu, Shanna Yang, Nehal N. Mehta, Alan T. Remaley
Software Mentions: 1
Published: over 4 years ago
10.3389/fcell.2021.698639
Extracellular Vesicles From the Human Natural Killer Cell Line NK3.3 Have Broad and Potent Anti-Tumor Activity
Cited by: 20
Author(s): A. Malcolm G. Cochran, Jacki Kornbluth
Software Mentions: 1
Published: over 3 years ago
10.3389/fcimb.2017.00296
The Metalloprotease, Mpr1, Engages AnnexinA2 to Promote the Transcytosis of Fungal Cells across the Blood-Brain Barrier
Cited by: 28
Author(s): Sarisa Na Pombejra, Michelle Salemi, Brett S. Phinney, Angela C Gelli
Software Mentions: 1
Published: over 7 years ago
10.3389/fcimb.2020.00099
Trypanosoma cruzi-Infected Human Macrophages Shed Proinflammatory Extracellular Vesicles That Enhance Host-Cell Invasion via Toll-Like Receptor 2
Cited by: 36
Author(s): André Cronemberger Andrade, Patrícia Xander, Rodrigo Pedro Soares, Natália Lima Pessoa, Marco Antônio Campos, Cameron Ellis, Brian Grajeda, Yifat Ofir-Birin, Igor C. Almeida, Neta Regev‐Rudzki, Ana Claúdia Torrecilhas
Software Mentions: 1
Published: over 4 years ago
10.3389/fcimb.2017.00420
The Proteome of Biologically Active Membrane Vesicles from Piscirickettsia salmonis LF-89 Type Strain Identifies Plasmid-Encoded Putative Toxins
Cited by: 21
Author(s): Cristian Oliver, Mauricio Hernández, Julia Isabel Tandberg, Karla Valenzuela, Leidy Lagos, Ronie E. Haro, Patricio Sánchez, Pamela Ruiz, Constanza Sanhueza-Oyarzún, Marcos Cortés, María T. Villar, Antonio Artigues, Hanne C. Winther‐Larsen, Rubén Avendaño‐Herrera, Alejandro J. Yáñez
Software Mentions: 1
Published: about 7 years ago
10.3389/fcimb.2019.00280
Pathogen Evasion of Chemokine Response Through Suppression of CXCL10
Cited by: 28
Author(s): Alejandro L. Antonia, Kyle D. Gibbs, Esme Trahair, Kelly J. Pittman, Amelia T. Martin, Benjamin H. Schott, Jeffrey S. Smith, Sudarshan Rajagopal, J. Will Thompson, R. Lee Reinhardt, Dennis C. Ko
Software Mentions: 1
Published: over 5 years ago
10.3389/fcimb.2018.00390
Quantitative Proteomics Reveals Antibiotics Resistance Function of Outer Membrane Proteins in Aeromonas hydrophila
Cited by: 20
Author(s): Zujie Yao, Lijun Sun, Yuqian Wang, Gang Li, Zhuang Guo, Dong Liu, Wenxiong Lin, Xiangmin Lin
Software Mentions: 1
Published: about 6 years ago
10.3389/fcimb.2015.00048
Purification and proteomics of pathogen-modified vacuoles and membranes
Cited by: 44
Author(s): Jo-Ana Herweg, Nicole Hansmeier, Andreas Otto, Anna C. Geffken, Prema Subbarayal, Bhupesh K. Prusty, Dörte Becher, Michael Hensel, Ulrich E. Schaible, Thomas Rudel, Hubert Hilbi
Software Mentions: 1
Published: over 9 years ago
10.3389/fcimb.2021.660280
Comparative Phosphoproteomics of Classical Bordetellae Elucidates the Potential Role of Serine, Threonine and Tyrosine Phosphorylation in Bordetella Biology and Virulence
Cited by: 2
Author(s): Laurence Don Wai Luu, Ling Zhong, Sandeep Kaur, Mark J. Raftery, Ruiting Lan
Software Mentions: 1
Published: over 3 years ago
10.3389/fcimb.2019.00355
Pbp1-Interacting Protein Mkt1 Regulates Virulence and Sexual Reproduction in Cryptococcus neoformans
Cited by: 6
Author(s): Ye-Eun Son, Ci Fu, Woo-Hwan Jung, Sang‐Hun Oh, Jin‐Hwan Kwak, María E. Cárdenas, Joseph Heitman, Hee-Soo Park
Software Mentions: 1
Published: about 5 years ago
10.3389/fcimb.2019.00179
Multi-platform Approach for Microbial Biomarker Identification Using Borrelia burgdorferi as a Model
Cited by: 4
Author(s): Kathryn J. Pflughoeft, Michael Mash, Nicole R. Hasenkampf, Mary B. Jacobs, Amanda C. Tardo, D. Mitchell Magee, Lusheng Song, Joshua LaBaer, Mario T. Philipp, Monica E. Embers, David P. AuCoin
Software Mentions: 1
Published: over 5 years ago
10.3389/fcimb.2018.00179
Morphodynamics of the Actin-Rich Cytoskeleton in Entamoeba histolytica
Cited by: 30
Author(s): Maria Manich, Nora Adriana Hernández‐Cuevas, Juan David Ospina‐Villa, Sylvie Syan, Laurence A. Marchat, Jean‐Christophe Olivo‐Marin, Nancy Guillén
Software Mentions: 1
Published: over 6 years ago
10.3389/fcimb.2020.585986
CLIPB10 is a Terminal Protease in the Regulatory Network That Controls Melanization in the African Malaria Mosquito Anopheles gambiae
Cited by: 12
Author(s): Xin Zhang, Miao Li, Layla El Moussawi, Sally A. Saab, Shasha Zhang, Mike A. Osta, Kristin Michel
Software Mentions: 1
Published: almost 4 years ago
10.3389/fcimb.2018.00447
Entamoeba histolytica Cyclooxygenase-Like Protein Regulates Cysteine Protease Expression and Virulence
Cited by: 8
Author(s): Preeti Shahi, Kris Chadee
Software Mentions: 1
Published: almost 6 years ago
10.3389/fcimb.2020.617310
A New Family of Bacteriolytic Proteins in Dictyostelium discoideum
Cited by: 2
Author(s): Cyril Guilhen, Wanessa Cristina Lima, Estelle Ifrid, Xènia Crespo-Yàñez, Otmane Lamrabet, Pierre Cosson
Software Mentions: 1
Published: almost 4 years ago
10.3389/fncel.2019.00163
Diazepam Accelerates GABAAR Synaptic Exchange and Alters Intracellular Trafficking
Cited by: 23
Author(s): Joshua M. Lorenz-Guertin, Matthew J. Bambino, Sabyasachi Das, Susan T. Weintraub, Tija C. Jacob
Software Mentions: 1
Published: over 5 years ago
10.3389/fncel.2014.00105
Alterations of protein composition along the rostro-caudal axis after spinal cord injury: proteomic, in vitro and in vivo analyses
Cited by: 29
Author(s): Dasa Cizkova, Françoise Le Marrec-Croq, Julien Franck, Lucia Slovinská, Ivana Grulova, Stéphanie Devaux, Christophe Lefebvre, Isabelle Fournier, Michel Salzet
Software Mentions: 1
Published: over 10 years ago
10.3389/fncel.2015.00170
Activation of the endoplasmic reticulum stress response in skeletal muscle of G93A*SOD1 amyotrophic lateral sclerosis mice
Cited by: 44
Author(s): Dapeng Chen, Yan Wang, Eva R. Chin
Software Mentions: 1
Published: over 9 years ago
10.3389/fchem.2016.00002
Label-Free Proteomics Assisted by Affinity Enrichment for Elucidating the Chemical Reactivity of the Liver Mitochondrial Proteome toward Adduction by the Lipid Electrophile 4-hydroxy-2-nonenal (HNE)
Cited by: 18
Author(s): Shin‐Cheng Tzeng, Christoph Maier
Software Mentions: 1
Published: over 8 years ago
10.3389/fchem.2020.00098
Biochemical Characterization of Oyster and Clam Galectins: Selective Recognition of Carbohydrate Ligands on Host Hemocytes and Perkinsus Parasites
Cited by: 10
Author(s): Gerardo R. Vasta, Chiguang Feng, Satoshi Tasumi, Kelsey Abernathy, M.A. Bianchet, Iain B. H. Wilson, Katharina Paschinger, Lai-Xi Wang, Muddasar Iqbal, Anita Ghosh, Md. Ruhul Amin, Brina A. Smith, Sean M. Brown, Aren Vista
Software Mentions: 1
Published: over 4 years ago
10.3389/fendo.2018.00606
A Novel Glycoproteomics Workflow Reveals Dynamic O-GlcNAcylation of COPγ1 as a Candidate Regulator of Protein Trafficking
Cited by: 10
Author(s): Nathan J. Cox, Peter Luo, Timothy J. Smith, Brittany Bisnett, Erik J. Soderblom, Michael Boyce
Software Mentions: 1
Published: about 6 years ago
10.3389/fimmu.2021.602689
Protein-Based Vaccine Protect Against Piscirickettsia salmonis in Atlantic Salmon (Salmo salar)
Cited by: 6
Author(s): Juan Pablo Pontigo, C Espinoza, Mauricio Hernández, Guillermo Nourdin, Cristian Oliver, Rubén Avendaño‐Herrera, Jaime Figueroa, Cecilia Rauch, José Miguel Troncoso, Luis Vargas‐Chacoff, Alejandro J. Yáñez
Software Mentions: 1
Published: almost 4 years ago
10.3389/fimmu.2017.01200
Spontaneous Secretion of the Citrullination Enzyme PAD2 and Cell Surface Exposure of PAD4 by Neutrophils
Cited by: 75
Author(s): Yebin Zhou, Bin Chen, Nanette Mittereder, Raghothama Chaerkady, Martin Strain, Ling An, Saifur Rahman, Wenting Ma, Choon Pei Low, Denice T. Y. Chan, Frances Neal, Clifton O. Bingham, Kevon Sampson, Erika Darrah, Richard M. Siegel, Sarfaraz Hasni, Felipe Andrade, Katherine A. Vousden, Tomas Mustelin, Gary P. Sims
Software Mentions: 1
Published: about 7 years ago
10.3389/fimmu.2019.01056
Discovery of Alpha-Gal-Containing Antigens in North American Tick Species Believed to Induce Red Meat Allergy
Cited by: 91
Author(s): Gary Crispell, Scott P. Commins, Stephanie A. Archer-Hartman, Sunil K. Choudhary, Guha Dharmarajan, Parastoo Azadi, Shahid Karim
Software Mentions: 1
Published: over 5 years ago
10.3389/fimmu.2021.693911
Deregulation of the Kallikrein Protease Family in the Salivary Glands of the Sjögren’s Syndrome ERdj5 Knockout Mouse Model
Cited by: 5
Author(s): Petros Moustardas, Naomi Yamada-Fowler, Eirini Apostolou, Athanasios G. Tzioufas, Maria V. Turkina, Giannis Spyrou
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2018.02773
Proteomic Analysis of Biomphalaria glabrata Hemocytes During in vitro Encapsulation of Schistosoma mansoni Sporocysts
Cited by: 29
Author(s): Nathalie Dinguirard, Maria Taciana Holanda Cavalcanti, Xiao Wu, Utibe Bickham-Wright, Grzegorz Sabat, Timothy P. Yoshino
Software Mentions: 1
Published: almost 6 years ago
10.3389/fimmu.2021.653883
DDX3X Links NLRP11 to the Regulation of Type I Interferon Responses and NLRP3 Inflammasome Activation
Cited by: 16
Author(s): Ioannis Kienes, Sarah Bauer, Clarissa Gottschild, Nora Mirza, Jens Pfannstiel, Martina Schröder, Thomas A. Kufer
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2014.00404
Differential Site Accessibility Mechanistically Explains Subcellular-Specific N-Glycosylation Determinants
Cited by: 42
Author(s): Ling Y. Lee, Chi‐Hung Lin, Susan Fanayan, Nicolle H. Packer, Morten Thaysen‐Andersen
Software Mentions: 1
Published: about 10 years ago
10.3389/fimmu.2020.630139
Tenascin-W Is a Novel Stromal Marker in Biliary Tract Cancers
Cited by: 4
Author(s): Ismaïl Hendaoui, Ahlem Lahmar, Luca Campo, Sihem Mebarki, Sandrine Bichet, Daniel Heß, Martin Degen, Nidhameddine Kchir, L. Farhat, Rania Hefaiedh, Christian Ruiz, Luigi Terracciano, Richard P. Tucker, L. Hendaoui, Ruth Chiquet‐Ehrismann
Software Mentions: 1
Published: over 3 years ago
10.3389/fimmu.2021.723433
Identification of Biomarkers for Systemic Distribution of Nanovesicles From Lactobacillus johnsonii N6.2
Cited by: 9
Author(s): Natalie A. Harrison, C. L. Gardner, Danilo R da Silva, Claudio F. González, Graciela L. Lorca
Software Mentions: 1
Published: about 3 years ago
10.3389/fimmu.2018.01259
Effects of Experimental Terrestrialization on the Skin Mucus Proteome of African Lungfish (Protopterus dolloi)
Cited by: 14
Author(s): Ryan D. Heimroth, Elisa Casadei, Irene Salinas
Software Mentions: 1
Published: over 6 years ago
10.3389/fimmu.2021.658601
Distinguishing Signal From Noise in Immunopeptidome Studies of Limiting-Abundance Biological Samples: Peptides Presented by I-Ab in C57BL/6 Mouse Thymus
Cited by: 11
Author(s): Padma P. Nanaware, Mollie Jurewicz, Cristina C. Clement, Liying Lu, Laura Santambrogio, Lawrence J. Stern
Software Mentions: 1
Published: over 3 years ago
10.3389/fmed.2020.00540
Expression of a Human Caveolin-1 Mutation in Mice Drives Inflammatory and Metabolic Defect-Associated Pulmonary Arterial Hypertension
Cited by: 5
Author(s): Anandharajan Rathinasabapathy, Courtney A. Copeland, Amber Crabtree, Erica J. Carrier, Christy Moore, Sheila Shay, Santhi Gladson, Eric D. Austin, Anne K. Kenworthy, James E. Loyd, Anna R. Hemnes, James West
Software Mentions: 1
Published: about 4 years ago
10.3389/fmicb.2019.01059
Roles of CpcF and CpcG1 in Peroxiredoxin-Mediated Oxidative Stress Responses and Cellular Fitness in the Cyanobacterium Synechocystis sp. PCC 6803
Cited by: 5
Author(s): Sookyung Oh, Beronda L. Montgomery
Software Mentions: 1
Published: over 5 years ago