Ecosyste.ms: Papers

10.1039/c8mt00239h

Copper stress in <i>Staphylococcus aureus</i> leads to adaptive changes in central carbon metabolism
Cited by: 46
Author(s): Emma Tarrant, Gustavo Pelicioli Riboldi, Matthew R. McIlvin, Jack Alan Stevenson, Anna Barwinska-Sendra, Louisa J Stewart, Mak A. Saito, Kevin J. Waldron
Software Mentions: 1
Published: almost 6 years ago

10.1111/1751-7915.12706

Functional characterization of LotP from <i> <scp>L</scp> iberibacter asiaticus </i>
Cited by: 9
Author(s): Flavia del Valle Loto, Janelle F. Coyle, Kaylie A. Padgett, Fernando A. Pagliai, C. L. Gardner, Graciela L. Lorca, Claudio F. González
Software Mentions: 1
Published: over 7 years ago

10.15698/mic2017.09.589

Farnesol inhibits translation to limit growth and filamentation in C. albicans and S. cerevisiae
Cited by: 21
Author(s): Nkechi Eucharia Egbe, Tawni Dornelles, Caroline Mary Paget, Lydia M. Castelli, Mark P. Ashe
Software Mentions: 1
Published: about 7 years ago

10.1186/s12934-018-1006-8

Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
Cited by: 29
Author(s): Thomas Eng, Philipp Demling, Robin A. Herbert, Yan Chen, Veronica T. Benites, Joel Martin, Anna Lipzen, Edward E. K. Baidoo, Lars M. Blank, Young-Mo Kim, Aindrila Mukhopadhyay
Software Mentions: 1
Published: about 6 years ago

10.1186/s12934-020-01358-5

Secretion of a low and high molecular weight β-glycosidase by Yarrowia lipolytica
Cited by: 13
Author(s): Paul Swietalski, Frank Hetzel, Ines Seitl, Lutz Fischer
Software Mentions: 1
Published: over 4 years ago

10.1186/s12934-016-0564-x

Proteomic analysis of the signaling pathway mediated by the heterotrimeric Gα protein Pga1 of Penicillium chrysogenum
Cited by: 15
Author(s): Ulises Carrasco-Navarro, Rosario Vera-Estrella, Bronwyn J. Barkla, Eduardo Zúñiga-León, Horacio Reyes‐Vivas, F Fernandez, Francisco Fierro
Software Mentions: 1
Published: about 8 years ago

10.1186/1475-2859-11-79

Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli
Cited by: 47
Author(s): Adrienne E. McKee, Becky J. Rutherford, Dylan Chivian, Edward Baidoo, Darmawi Juminaga, Dwight Kuo, Peter I. Benke, Jeffrey A. Dietrich, Magali Suzanne, Adam P. Arkin, Young-Mo Kim, Paul D. Adams, Jay D. Keasling, Swapnil R. Chhabra
Software Mentions: 1
Published: over 12 years ago

10.1264/jsme2.ME16110

Physical, Chemical and Proteomic Evidence of Potato Suberin Degradation by the Plant Pathogenic Bacterium &lt;i&gt;Streptomyces scabiei&lt;/i&gt;
Cited by: 17
Author(s): Carole Beaulieu, Amadou Sidibé, Raoudha Jabloune, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Ernest Monga, Mark A. Bernards
Software Mentions: 1
Published: almost 9 years ago

10.1264/jsme2.ME15195

Proteome Analyses of Soil Bacteria Grown in the Presence of Potato Suberin, a Recalcitrant Biopolymer
Cited by: 6
Author(s): Amadou Sidibé, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Lauriane Giroux, Vicky Toussaint, Carole Beaulieu
Software Mentions: 1
Published: almost 9 years ago

10.1002/mbo3.1012

Proteomic analysis of <i>Aspergillus niger</i> 3.316 under heat stress
Cited by: 10
Author(s): Xiaogeng Deng, Bin Du, Fengmei Zhu, Yanan Gao, Jun Li
Software Mentions: 1
Published: over 4 years ago

10.1099/mic.0.070755-0

Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM
Cited by: 92
Author(s): Brant R. Johnson, Kurt Selle, Sarah O’Flaherty, Yong Jun Goh, Todd R. Klaenhammer
Software Mentions: 1
Published: about 11 years ago

10.1128/MRA.01280-18

The Foliar Endophyte <i>Phialocephala scopiformis</i> DAOMC 229536 Proteome When Grown on Wood Used as the Sole Carbon Source
Cited by: 2
Author(s): Jennifer M. Bhatnagar, Grzegorz Sabat, Daniel Cullen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40168-020-00845-6

Gut microbiota-derived indole 3-propionic acid protects against radiation toxicity via retaining acyl-CoA-binding protein
Cited by: 93
Author(s): He Xiao, Ming Cui, Yuan Li, Jing Dong, Shuqin Zhang, Changchun Zhu, Mian Jiang, Tong Zhu, Bin Wang, Haichao Wang, Saijun Fan
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms8121883

Proteomic 2D-DIGE Analysis of Milk Whey from Dairy Cows with Staphylococcus aureus Mastitis Reveals Overexpression of Host Defense Proteins
Cited by: 9
Author(s): Shaimaa Abdelmegid, D.F. Kelton, Jeff Caswell, Gordon M. Kirby
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms7050144

MAV_4644 Interaction with the Host Cathepsin Z Protects Mycobacterium avium subsp. hominissuis from Rapid Macrophage Killing
Cited by: 4
Author(s): Matthew S. Lewis, Lia Danelishvili, Sasha J. Rose, Luiz E. Bermudez
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms7090367

Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome
Cited by: 29
Author(s): Oskar Hickl, Anna Heintz‐Buschart, Anke Trautwein-Schult, Rajna Hercog, Peer Bork, Paul Wilmes, Dörte Becher
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms9020253

Label-Free Quantitative Proteomics Analysis in Susceptible and Resistant Brassica napus Cultivars Infected with Xanthomonas campestris pv. campestris
Cited by: 4
Author(s): Tabibul Islam, Bok-Rye Lee, Van Hien La, Dong-Won Bae, Woo‐Jin Jung, Tae-Hwan Kim
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12943-015-0305-5

A conserved region within interferon regulatory factor 5 controls breast cancer cell migration through a cytoplasmic and transcription-independent mechanism
Cited by: 7
Author(s): Erica Maria Pimenta, Betsy J. Barnes
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12943-021-01397-5

SPOP-mediated ubiquitination and degradation of PDK1 suppresses AKT kinase activity and oncogenic functions
Cited by: 31
Author(s): Qiwei Jiang, Nana Zheng, Lang Bu, Xiaomei Zhang, Xiaoling Zhang, Yuanzhong Wu, Yaqing Su, Lei Wang, Xiaomin Zhang, Shancheng Ren, Xiangpeng Dai, Depei Wu, Wei Xie, Wenyi Wei, Yasheng Zhu, Jianping Guo
Software Mentions: 1
Published: over 3 years ago

10.1186/1476-4598-10-145

NONO and RALY proteins are required for YB-1 oxaliplatin induced resistance in colon adenocarcinoma cell lines
Cited by: 48
Author(s): Serges P. Tsofack, Chantal Garand, Chris Sereduk, Donald Chow, Meraj Aziz, David R.P. Guay, Hongwei Yin, Michel Lebel
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.molcel.2017.06.009

Wnt-Dependent Inactivation of the Groucho/TLE Co-repressor by the HECT E3 Ubiquitin Ligase Hyd/UBR5
Cited by: 47
Author(s): Joshua E Flack, Juliusz Mieszczanek, Nikola Novcic, Mariann Bienz
Software Mentions: 1
Published: over 7 years ago

10.1016/j.molcel.2017.01.019

PRMT5-Dependent Methylation of the TIP60 Coactivator RUVBL1 Is a Key Regulator of Homologous Recombination
Cited by: 99
Author(s): Thomas L. Clarke, María Pilar Sánchez-Bailón, Kelly Chiang, John J. Reynolds, Joaquín Herrero-Ruíz, Tiago M. Bandeiras, Pedro M. Matías, Sarah Maslen, J. Mark Skehel, Grant S. Stewart, Clare C. Davies
Software Mentions: 1
Published: over 7 years ago

10.1016/j.molcel.2019.08.003

SUMO-Chain-Regulated Proteasomal Degradation Timing Exemplified in DNA Replication Initiation
Cited by: 37
Author(s): Ivan Psakhye, Federica Castellucci, Dana Branzei
Software Mentions: 1
Published: about 5 years ago

10.1074/mcp.M113.036764

Antiandrogens Act as Selective Androgen Receptor Modulators at the Proteome Level in Prostate Cancer Cells*
Cited by: 10
Author(s): Greg N. Brooke, Simon C. Gamble, Michael A. Hough, Shajna Begum, Dafydd Alwyn Dart, Michael Odontiadis, Susan Powell, Flavia Marialucia Fioretti, Rosie A. Bryan, Jonathan Waxman, Robin Wait, Charlotte Bevan
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.M116.059774

Fasciola hepatica Surface Tegument: Glycoproteins at the Interface of Parasite and Host
Cited by: 45
Author(s): Ravidà Alessandra, Krystyna Cwiklinski, Allison Aldridge, Paul Clarke, Róisı́n Thompson, Jared Q. Gerlach, Michelle Kilcoyne, Cornelis H. Hokke, John P. Dalton, Sandra M. O’Neill
Software Mentions: 1
Published: about 8 years ago

10.1074/mcp.M116.058552

HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1
Cited by: 17
Author(s): Paul Ashford, Anna Hernandez, Todd M. Greco, Anna Buch, Beate Sodeik, Ileana M. Cristea, Kay Grünewald, Adrian J. Shepherd, Maya Topf
Software Mentions: 1
Published: about 8 years ago

10.1016/j.mcpro.2021.100079

Evaluation and Refinement of Sample Preparation Methods for Extracellular Matrix Proteome Coverage
Cited by: 29
Author(s): Maxwell C. McCabe, Lauren R. Schmitt, Ryan C. Hill, Monika Dzieciątkowska, Mark Maslanka, Willeke F. Daamen, Toin H. Van Kuppevelt, Danique J. Hof, Kirk C. Hansen
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.M112.018846

Proteomic Profiling of Mycobacterium tuberculosis Identifies Nutrient-starvation-responsive Toxin–antitoxin Systems
Cited by: 124
Author(s): Jakob Albrethsen, Jeppe Agner, Sander R. Piersma, Peter Højrup, Thang V. Pham, Karin Weldingh, Connie R. Jiménez, Peter Andersen, Ida Rosenkrands
Software Mentions: 1
Published: over 11 years ago

10.1074/mcp.M115.055541

Adjuvant-induced Human Monocyte Secretome Profiles Reveal Adjuvant- and Age-specific Protein Signatures
Cited by: 22
Author(s): Djin-Ye Oh, David J. Dowling, Saima Ahmed, Hyungwon Choi, Spencer E. Brightman, Ilana Bergelson, Sebastian Tobias Berger, John F K Sauld, Matthew A. Pettengill, Alvin T. Kho, Henry Pollack, Hanno Steen, Ofer Levy
Software Mentions: 1
Published: over 8 years ago

10.1074/mcp.M115.053934

The Extracellular Vesicles of the Helminth Pathogen, Fasciola hepatica: Biogenesis Pathways and Cargo Molecules Involved in Parasite Pathogenesis*
Cited by: 174
Author(s): Krystyna Cwiklinski, Eduardo de la Torre-Escudero, María Trelis, Dolores Bernal, Philippe J. Dufresne, Gerry Brennan, Sandra M. O’Neill, José F. Tort, Steve Paterson, Antonio Marcilla, John P. Dalton, Mark W. Robinson
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules26071913

Clinical Amyloid Typing by Proteomics: Performance Evaluation and Data Sharing between Two Centres
Cited by: 4
Author(s): Diana Canetti, Francesca Brambilla, Nigel B. Rendell, Paola Nocerino, Janet A. Gilbertson, Dario Di Silvestre, Andrea Bergamaschi, Francesca Lavatelli, Giampaolo Merlini, Julian D. Gillmore, Vittorio Bellotti, Pierluigi Mauri, Graham W. Taylor
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules23071762

Preparation and Use of a General Solid-Phase Intermediate to Biomimetic Scaffolds and Peptide Condensations
Cited by: 2
Author(s): J. Geno Samaritoni, Jacek Martynow, Martin J. O’Donnell, William L. Scott
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules25112685

High Hydrostatic Pressure-Assisted Enzymatic Hydrolysis Affect Mealworm Allergenic Proteins
Cited by: 17
Author(s): Abir Boukil, Véronique Perreault, Julien Chamberland, Samir Mezdour, Yves Pouliot, Alain Doyen
Software Mentions: 1
Published: over 4 years ago

10.3390/molecules25194395

Sericin-Induced Melanogenesis in Cultured Retinal Pigment Epithelial Cells Is Associated with Elevated Levels of Hydrogen Peroxide and Inflammatory Proteins
Cited by: 1
Author(s): Ayyad Zartasht Khan, Catherine Jackson, Tor Paaske Utheim, Sjur Reppe, Dipak Sapkota, Ole Kristoffer Olstad, Bernd Thiede, Jon Roger Eidet
Software Mentions: 1
Published: about 4 years ago

10.3390/molecules21010104

Exploration of Scaffolds from Natural Products with Antiplasmodial Activities, Currently Registered Antimalarial Drugs and Public Malarial Screen Data
Cited by: 6
Author(s): Samuel Egieyeh, James Syce, Alan Christoffels, Sarel F. Malan
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules25051184

Combination of High Hydrostatic Pressure and Ultrafiltration to Generate a New Emulsifying Ingredient from Egg Yolk
Cited by: 7
Author(s): Mélanie Giarratano, Pauline Duffuler, Julien Chamberland, G. J. Brisson, James D. House, Yves Pouliot, Alain Doyen
Software Mentions: 1
Published: over 4 years ago

10.3390/molecules26020351

Effects of Hexane on Protein Profile, Solubility and Foaming Properties of Defatted Proteins Extracted from Tenebrio molitor Larvae
Cited by: 15
Author(s): Alexia Gravel, Alice Marciniak, Manon Couture, Alain Doyen
Software Mentions: 1
Published: almost 4 years ago

10.3390/molecules171012086

c-IAP1 Binds and Processes PCSK9 Protein: Linking the c-IAP1 in a TNF-α Pathway to PCSK9-Mediated LDLR Degradation Pathway
Cited by: 27
Author(s): Weiming Xu, Lizhi Liu, D. Hornby
Software Mentions: 1
Published: about 12 years ago

10.3390/molecules25184173

Dependence of Biocatalysis on D/H Ratio: Possible Fundamental Differences for High-Level Biological Taxons
Cited by: 4
Author(s): I. A. Zlatskiy, Т. В. Плетенева, Alexander Skripnikov, Т. В. Гребенникова, Т. В. Максимова, Н. В. Антипова, O. V. Levitskaya, Mariia Makarova, I. L. Selivanenko, А. В. Сыроешкин
Software Mentions: 1
Published: about 4 years ago

10.3390/molecules26154484

Postharvest Drying Techniques Regulate Secondary Metabolites and Anti-Neuroinflammatory Activities of Ganoderma lucidum
Cited by: 4
Author(s): Nooruddin Bin Sadiq, Dahye Ryu, Jwa Yeong Cho, A-Hyeon Lee, Dae-Geun Song, Banzragch Dorjsembe, Jin‐Chul Kim, Jooyeoun Jung, Chu-Won Nho, Muhammad Hamayun, Seung‐Hoon Yang, Ho-Youn Kim
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules21020148

A SILAC-Based Approach Elicits the Proteomic Responses to Vancomycin-Associated Nephrotoxicity in Human Proximal Tubule Epithelial HK-2 Cells
Cited by: 11
Author(s): Zhi Ling Li, Shu Feng Zhou
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules21030290

The Role of CD44 and ERM Proteins in Expression and Functionality of P-glycoprotein in Breast Cancer Cells
Cited by: 43
Author(s): Deep Pokharel, Matthew P. Padula, Jie Lu, Ritu Jaiswal, Steven P. Djordjevic, Mary Bebawy
Software Mentions: 1
Published: over 8 years ago

10.1002/minf.202000163

Pharmacoinformatic Investigation of Medicinal Plants from East Africa
Cited by: 21
Author(s): Conrad V. Simoben, Ammar Qaseem, Aurélien F. A. Moumbock, Kiran K. Telukunta, Stefan Günther, Wolfgang Sippl, Fidele Ntie‐Kang
Software Mentions: 1
Published: about 4 years ago

10.1186/s13024-017-0196-6

The lysosomal protein cathepsin L is a progranulin protease
Cited by: 72
Author(s): Chris W. Lee, Jeannette N. Stankowski, Jeannie Chew, Casey Cook, Ying‐Wai Lam, Sandra Almeida, Yari Carlomagno, Kwok‐Fai Lau, Mercedes Prudencio, Fen Biao Gao, Matthew Bogyo, Dennis W. Dickson, Leonard Petrucelli
Software Mentions: 1
Published: over 7 years ago

10.1002/mrd.23153

The seminal acrosin‐inhibitor ClTI1/SPINK2 is a fertility‐associated marker in the chicken
Cited by: 12
Author(s): Aurore Thélie, Sophie Réhault-Godbert, J. C. Poirier, Marina Govoroun, Sophie Fouchécourt, Élisabeth Blesbois
Software Mentions: 1
Published: over 5 years ago

10.15252/msb.20145808

The functional interactome of <scp>PYHIN</scp> immune regulators reveals <scp>IFIX</scp> is a sensor of viral <scp>DNA</scp>
Cited by: 76
Author(s): Benjamin A. Diner, Tuo Li, Todd M. Greco, Marni S. Crow, John Fuesler, Jennifer Wang, Ileana M. Cristea
Software Mentions: 1
Published: almost 10 years ago

10.15252/msb.20178009

tRNA epitranscriptomics and biased codon are linked to proteome expression in <i>Plasmodium falciparum</i>
Cited by: 29
Author(s): Chee Sheng Ng, Ameya Sinha, Yaw Aniweh, Qianhui Nah, I. Ramesh Babu, Cheng Gu, Yok Hian Chionh, Peter C. Dedon, Peter R. Preiser
Software Mentions: 1
Published: about 6 years ago

10.15252/msb.20198985

Bile canaliculi remodeling activates <scp>YAP</scp> via the actin cytoskeleton during liver regeneration
Cited by: 25
Author(s): Kirstin Meyer, Hernán Morales‐Navarrete, Stefan Seifert, Michaela Wilsch-Braeuninger, Uta Dahmen, Elly M. Tanaka, Lutz Brusch, Yannis Kalaidzidis, Marino Zerial
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.omtn.2019.07.011

Multi-pathway Protective Effects of MicroRNAs on Human Chondrocytes in an In Vitro Model of Osteoarthritis
Cited by: 51
Author(s): Rua Nader Al-Modawi, Jan E. Brinchmann, Tommy A. Karlsen
Software Mentions: 1
Published: about 5 years ago

10.3390/vaccines7040182

MVA-Vectored Pentameric Complex (PC) and gB Vaccines Improve Pregnancy Outcome after Guinea Pig CMV Challenge, but Only gB Vaccine Reduces Vertical Transmission
Cited by: 11
Author(s): Heidi Contreras, Felix Wussow, Claudia Fernández-Alarcón, Craig J. Bierle, Jenny Nguyen, Don J. Diamond, Mark R. Schleiss
Software Mentions: 1
Published: about 5 years ago

10.3390/vaccines8030463

Proteomic as an Exploratory Approach to Develop Vaccines Against Tick-Borne Diseases Using Lyme Borreliosis as a Test Case
Cited by: 7
Author(s): Émilie Talagrand-Reboul, Benoît Westermann, Matthieu A. Raess, Gilles Schnell, Paola Cantero, Cathy Barthel, Laurence Ehret‐Sabatier, B. Jaulhac, Nathalie Boulanger
Software Mentions: 1
Published: over 4 years ago

10.1186/1297-9716-44-24

Increased annexin A1 and A2 levels in bronchoalveolar lavage fluid are associated with resistance to respiratory disease in beef calves
Cited by: 11
Author(s): Chandrika Senthilkumaran, Mary E. Clark, Khaled Abdelaziz, K G Bateman, Allison Mackay, Joanne Hewson, Jeff Caswell
Software Mentions: 1
Published: over 11 years ago

10.1186/s13567-018-0548-4

Elevated faecal ovotransferrin concentrations are indicative for intestinal barrier failure in broiler chickens
Cited by: 21
Author(s): Evy Goossens, Griet Debyser, Chana Callens, M. de Gussem, Annelike Dedeurwaerder, Bart Devreese, Freddy Haesebrouck, Monika Flügel, Stefan Pelzer, Frank Thiemann, Richard Ducatelle, Filip Van Immerseel
Software Mentions: 1
Published: over 6 years ago

10.1186/1743-422X-6-166

Analysis of virion associated host proteins in vesicular stomatitis virus using a proteomics approach
Cited by: 39
Author(s): Megan Moerdyk-Schauwecker, Sun-Il Hwang, Valery Z. Grdzelishvili
Software Mentions: 1
Published: about 15 years ago

10.1186/1743-422X-9-35

The genome and proteome of a Campylobacter coli bacteriophage vB_CcoM-IBB_35 reveal unusual features
Cited by: 21
Author(s): Carla A. O. C. M. Carvalho, Andrew M. Kropinski, Erika J. Lingohr, Sílvio Roberto Branco Santos, Jonathan King, Joana Azeredo
Software Mentions: 1
Published: almost 13 years ago

10.1186/1743-422X-10-165

Whole genome sequencing and comparative genomic analyses of two Vibrio cholerae O139 Bengal-specific Podovirusesto other N4-like phages reveal extensive genetic diversity
Cited by: 37
Author(s): Derrick E. Fouts, Jochen Klumpp, Kimberly A. Bishop‐Lilly, Mathumathi Rajavel, Kristin M Willner, Amy Butani, Matthew Henry, Biswajit Biswas, Manrong Li, M. John Albert, Martin J. Loessner, Richard Calendar, Shanmuga Sozhamannan
Software Mentions: 1
Published: over 11 years ago

10.1186/s12985-015-0442-x

Quantitative proteomics identifies 38 proteins that are differentially expressed in cucumber in response to cucumber green mottle mosaic virus infection
Cited by: 17
Author(s): Huawei Liu, Chao Liang, Pengfei Liu, Laixin Luo, Jianqiang Li
Software Mentions: 1
Published: almost 9 years ago

10.1080/21505594.2017.1395129

From the wound to the bench: exoproteome interplay between wound-colonizing <i>Staphylococcus aureus</i> strains and co-existing bacteria
Cited by: 13
Author(s): Andrea N. García-Pérez, Anne de Jong, Sabryna Junker, Dörte Becher, Monika A. Chlebowicz, José C. Duipmans, Marcel F. Jonkman, Jan Maarten van Dijl
Software Mentions: 1
Published: over 6 years ago

10.1080/21505594.2018.1499379

Comparative proteomics of two <i>Mycoplasma hyopneumoniae</i> strains and <i>Mycoplasma flocculare</i> identified potential porcine enzootic pneumonia determinants
Cited by: 18
Author(s): Jéssica Andrade Paes, Lais Del Prá Netto Machado, Fernanda Munhoz Dos Anjos Leal, Sofia N Moraes, Hércules Moura, John R. Barr, Henrique Bunselmeyer Ferreira
Software Mentions: 1
Published: over 6 years ago

10.1080/21505594.2019.1624102

Three new serine-protease autotransporters of <i>Enterobacteriaceae</i> (SPATEs) from extra-intestinal pathogenic <i>Escherichia coli</i> and combined role of SPATEs for cytotoxicity and colonization of the mouse kidney
Cited by: 20
Author(s): Hajer Habouria, Pravil Pokharel, Ségolène Maris, Amélie Garénaux, Hicham Bessaiah, Sébastien Houle, Frédéric J. Veyrier, Stéphanie Guyomard-Rabenirina, Antoine Talarmin, Charles M. Dozois
Software Mentions: 1
Published: almost 6 years ago

10.1080/21505594.2020.1793525

Exoproteomic profiling uncovers critical determinants for virulence of livestock-associated and human-originated <i>Staphylococcus aureus</i> ST398 strains
Cited by: 12
Author(s): Xin Zhao, Monika A Chlebowicz-Fliss, Min Wang, Elias Vera Murguia, Anne de Jong, Dörte Becher, Sandra Maaß, Girbe Buist, Jan Maarten van Dijl
Software Mentions: 1
Published: over 4 years ago

10.1080/21505594.2020.1855923

SarA plays a predominant role in controlling the production of extracellular proteases in the diverse clinical isolates of <i>Staphylococcus aureus</i> LAC and UAMS-1
Cited by: 11
Author(s): Aura M Ramirez, Karen E. Beenken, Stephanie D. Byrum, Alan J. Tackett, Lindsey N. Shaw, Brittney D. Gimza, Mark S. Smeltzer
Software Mentions: 1
Published: almost 4 years ago

10.3390/v2040961

Complete Nucleotide Sequence and Molecular Characterization of Bacillus Phage TP21 and its Relatedness to Other Phages with the Same Name
Cited by: 21
Author(s): Jochen Klumpp, Richard Calendar, Martin J. Loessner
Software Mentions: 1
Published: over 14 years ago

10.3390/v6020727

Identification by Mass Spectrometry and Immune Response Analysis of Guinea Pig Cytomegalovirus (GPCMV) Pentameric Complex Proteins GP129, 131 and 133
Cited by: 10
Author(s): Josephine S. Gnanandarajah, Peter A. Gillis, Nelmary Hernandez-Alvarado, LeeAnn Higgins, Todd W. Markowski, Heungsup Sung, Sheila F Lumley, Mark R. Schleiss
Software Mentions: 1
Published: almost 11 years ago

10.3390/v7062754

The Chikungunya Virus Capsid Protein Contains Linear B Cell Epitopes in the N- and C-Terminal Regions that are Dependent on an Intact C-Terminus for Antibody Recognition
Cited by: 13
Author(s): Lucas Y. H. Goh, Jody Hobson‐Peters, Natalie A. Prow, K C Baker, Thisun B. H. Piyasena, Carmel Taylor, Ashok Rana, Marcus L. Hastie, Jeff J. Gorman, Roy A. Hall
Software Mentions: 1
Published: over 9 years ago

10.3390/v7062758

A Thermophilic Phage Endolysin Fusion to a Clostridium perfringens-Specific Cell Wall Binding Domain Creates an Anti-Clostridium Antimicrobial with Improved Thermostability
Cited by: 47
Author(s): Steven M. Swift, Bruce S. Seal, Johnna K. Garrish, Brian B. Oakley, Kelli L. Hiett, Hung‐Yueh Yeh, Rebekah Woolsey, Kathleen M. Schegg, J. Eric Line, David M. Donovan
Software Mentions: 1
Published: over 9 years ago

10.3390/v8020052

Infectious Salmon Anaemia Virus (ISAV) RNA Binding Protein Encoded by Segment 8 ORF2 and Its Interaction with ISAV and Intracellular Proteins
Cited by: 10
Author(s): Christel M. Olsen, Turhan Markussen, Bernd Thiede, Espen Rimstad
Software Mentions: 1
Published: almost 9 years ago

10.3390/v9030049

Viral Protein Kinetics of Piscine Orthoreovirus Infection in Atlantic Salmon Blood Cells
Cited by: 32
Author(s): Hanne Merethe Haatveit, Øystein Wessel, Turhan Markussen, Morten Lund, Bernd Thiede, Ingvild Berg Nyman, Stine Braaen, Maria K. Dahle, Espen Rimstad
Software Mentions: 1
Published: over 7 years ago

10.3390/v12030294

Structures of Three Actinobacteriophage Capsids: Roles of Symmetry and Accessory Proteins
Cited by: 11
Author(s): Podgorski JM, Joshua Calabrese, Lauren Alexandrescu, Deborah Jacobs-Sera, Welkin H. Pope, Graham F. Hatfull, Simon White
Software Mentions: 1
Published: over 4 years ago

10.3390/v12070725

A Cut above the Rest: Characterization of the Assembly of a Large Viral Icosahedral Capsid
Cited by: 8
Author(s): Erin R Reilly, Milky K Abajorga, Cory Kiser, Nurul Humaira Mohd Redzuan, Zein Haidar, Lily E. Adams, Randy Diaz, Juliana A Pinzon, André O. Hudson, Lindsay W. Black, Ru-ching Hsia, Susan T. Weintraub, Julie A. Thomas
Software Mentions: 1
Published: over 4 years ago

10.3390/v13030377

The Alphaviral Capsid Protein Inhibits IRAK1-Dependent TLR Signaling
Cited by: 3
Author(s): V Douglas Landers, Daniel W. Wilkey, Michael L. Merchant, Thomas C. Mitchell, Kevin J. Sokoloski
Software Mentions: 1
Published: over 3 years ago

10.3390/v13061038

RuvB-Like Protein 2 Interacts with the NS1 Protein of Influenza A Virus and Affects Apoptosis That Is Counterbalanced by Type I Interferons
Cited by: 0
Author(s): Yimeng Wang, Jianhong Zhou, Samuel G. Mackintosh, Yong Du
Software Mentions: 1
Published: over 3 years ago

10.1186/1477-7819-12-371

RAB8A a new biomarker for endometrial cancer?
Cited by: 6
Author(s): Yachun Bie, Zhenyu Zhang
Software Mentions: 1
Published: almost 11 years ago

10.1186/s13071-015-0985-0

In-depth characterization of trypsin-like serine peptidases in the midgut of the sugar fed Culex quinquefasciatus
Cited by: 9
Author(s): André Borges-Veloso, Leonardo Sabóia-Vahia, Geovane Dias-Lopes, Gilberto B. Domont, Constança Britto, Patrícia Cuervo, José Batista de Jesus
Software Mentions: 1
Published: over 9 years ago

10.1186/1756-3305-5-140

First analysis of the secretome of the canine heartworm, Dirofilaria immitis
Cited by: 39
Author(s): James Geary, Mohamed Satti, Yovany Moreno, Nicole J. Madrill, Doug Whitten, Selwyn Arlington Headley, Dalen Agnew, Timothy G. Geary, Charles D. Mackenzie
Software Mentions: 1
Published: over 12 years ago

10.1186/s13071-017-2077-9

Immune recognition of salivary proteins from the cattle tick Rhipicephalus microplus differs according to the genotype of the bovine host
Cited by: 13
Author(s): Gustavo García, Sandra Regina Maruyama, Kristina Nelson, José M. C. Ribeiro, Luiz Gustavo Gardinassi, Antônio Augusto Mendes Maia, Beatriz Rossetti Ferreira, F.N.J. Kooyman, Isabel Kinney Ferreira de Miranda Santos
Software Mentions: 1
Published: over 7 years ago

10.1186/s13071-015-1016-x

Anopheles stephensi p38 MAPK signaling regulates innate immunity and bioenergetics during Plasmodium falciparum infection
Cited by: 16
Author(s): Bo Wang, Nazzy Pakpour, Eleonora Napoli, Anna Drexler, Elizabeth K.K. Glennon, Win Surachetpong, Kong Wai Cheung, Alicia Álvarez Aguirre, John M. Klyver, Edwin E. Lewis, Richard A. Eigenheer, Brett S. Phinney, Cecilia R Giulivi, Shirley Luckhart
Software Mentions: 1
Published: over 9 years ago

10.1186/1756-3305-7-252

Infection with dengue-2 virus alters proteins in naturally expectorated saliva of Aedes aegypti mosquitoes
Cited by: 29
Author(s): Daniel M. Chisenhall, Rebecca C. Christofferson, Michael K. McCracken, Ann Marie Johnson, Berlin Londoño-Rentería, Christopher N. Mores
Software Mentions: 1
Published: over 10 years ago

10.1186/s13071-016-1298-7

Identification of repressive and active epigenetic marks and nuclear bodies in Entamoeba histolytica
Cited by: 8
Author(s): Daniela Lozano-Amado, Abril Marcela Herrera‐Solorio, Jesús Valdés, Leticia Alemán-Lazarini, Ma. de Jesús Almaráz-Barrera, Eva Luna-Rivera, Miguel Vargas, Rosaura Hernández‐Rivas
Software Mentions: 1
Published: almost 9 years ago

10.3390/pathogens5020040

Comparison of Surface Proteomes of Adherence Variants of Listeria Monocytogenes Using LC-MS/MS for Identification of Potential Surface Adhesins
Cited by: 9
Author(s): Hung King Tiong, Steven D. Hartson, Peter M. Muriana
Software Mentions: 1
Published: over 8 years ago

10.1186/s12969-017-0220-y

Homocysteine, folate, hs-C-reactive protein, tumor necrosis factor alpha and inflammatory proteins: are these biomarkers related to nutritional status and cardiovascular risk in childhood-onset systemic lupus erythematosus?
Cited by: 11
Author(s): Roberta Garcia Salomão, Luciana Martins de Carvalho, Clarice Izumi, Érika Silva Czernisz, José César Rosa, Sonir Roberto Rauber Antonini, Ana Carolina Bueno, Maria Olímpia Ribeiro do Vale Almada, Carolina de Almeida Coelho‐Landell, Alceu Afonso Jordão, Virgínia Paes Leme Ferriani, Jacqueline Pontes Monteiro
Software Mentions: 1
Published: almost 7 years ago

10.7717/peerj.7717

Urine proteome changes in rats subcutaneously inoculated with approximately ten tumor cells
Cited by: 7
Author(s): Jing Wei, Wenqi Meng, Youhe Gao
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.7535

Identification of a native<i>Bacillus thuringiensis</i>strain from Sri Lanka active against Dipel-resistant<i>Plutella xylostella</i>
Cited by: 14
Author(s): Rashini Yasara Baragamaarachchi, Jayanetti Koralage Ramani Radhika Samarasekera, Ovitigala Vithanage Don Sisira Jagathpriya Weerasena, Kurt Lamour, Juan Luís Jurat-Fuentes
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.754

Amyloid domains in the cell nucleus controlled by nucleoskeletal protein lamin B1 reveal a new pathway of mercury neurotoxicity
Cited by: 15
Author(s): Florian Arnhold, Karl‐Heinz Gührs, Anna von Mikecz
Software Mentions: 1
Published: almost 10 years ago

10.7717/peerj.2007

Sequence/structural analysis of xylem proteome emphasizes pathogenesis-related proteins, chitinases and<i>β</i>-1, 3-glucanases as key players in grapevine defense against<i>Xylella fastidiosa</i>
Cited by: 13
Author(s): Sandeep Chakraborty, Rafael Nascimento, Paulo A. Zaini, Hossein Gouran, Basuthkar J. Rao, Luiz Ricardo Goulart, Abhaya M. Dandekar
Software Mentions: 1
Published: over 8 years ago

10.7717/peerj.2911

Species-specific pharmacology of maximakinin, an amphibian homologue of bradykinin: putative prodrug activity at the human B2receptor and peptidase resistance in rats
Cited by: 5
Author(s): Xavier Charest‐Morin, Hélène Bachelard, Mélissa Jean, François Marceau
Software Mentions: 1
Published: almost 8 years ago

10.7717/peerj.3886

Alpha-arylphorin is a mitogen in the <i>Heliothis virescens</i> midgut cell secretome upon Cry1Ac intoxication
Cited by: 12
Author(s): Anaïs Castagnola, Jerreme Jackson, Omaththage P. Perera, Cris Oppert, Shigetoshi Eda, Juan Luís Jurat-Fuentes
Software Mentions: 1
Published: about 7 years ago

10.7717/peerj.4510

Proteomic identification of galectin-11 and 14 ligands from<i>Haemonchus contortus</i>
Cited by: 7
Author(s): Dhanasekaran Sakthivel, Jaclyn Swan, Sarah Preston, Shakif-Azam, Pierre Faou, Yaqing Jiao, Rachael Downs, Harinda Rajapaksha, Robin B. Gasser, David Piedrafita, Travis Beddoe
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.813

Effects of anesthetics pentobarbital sodium and chloral hydrate on urine proteome
Cited by: 10
Author(s): Mindi Zhao, Xundou Li, Menglin Li, Youhe Gao
Software Mentions: 1
Published: over 9 years ago

10.7717/peerj.2058

Potential urinary aging markers of 20-month-old rats
Cited by: 9
Author(s): Xundou Li, Youhe Gao
Software Mentions: 1
Published: over 8 years ago

10.3390/pharmaceutics13091392

Proteomics-Based Retinal Target Engagement Analysis and Retina-Targeted Delivery of 17β-Estradiol by the DHED Prodrug for Ocular Neurotherapy in Males
Cited by: 4
Author(s): Katalin Prókai-Tátrai, Khadiza Zaman, Vien Nguyen, Daniel L. De La Cruz, László Prókai
Software Mentions: 1
Published: about 3 years ago

10.3390/pharmaceutics12020101

17β-Estradiol Delivered in Eye Drops: Evidence of Impact on Protein Networks and Associated Biological Processes in the Rat Retina through Quantitative Proteomics
Cited by: 6
Author(s): László Prókai, Khadiza Zaman, Vien Nguyen, Katalin Prókai-Tátrai
Software Mentions: 1
Published: almost 5 years ago

10.3390/pharmaceutics11010031

Protein Corona Fingerprints of Liposomes: New Opportunities for Targeted Drug Delivery and Early Detection in Pancreatic Cancer
Cited by: 38
Author(s): Sara Palchetti, Damiano Caputo, Luca Digiacomo, Anna Laura Capriotti, Roberto Coppola, Daniela Pozzi, Giulio Caracciolo
Software Mentions: 1
Published: almost 6 years ago

10.14814/phy2.12116

The exocyst and regulatory GTPases in urinary exosomes
Cited by: 24
Author(s): Maria F. Chacon-Heszele, Soo Young Choi, Xiaofeng Zuo, Jeong‐In Baek, Chris W. Ward, Joshua H. Lipschutz
Software Mentions: 1
Published: over 10 years ago

10.14814/phy2.14610

Resistant starch slows the progression of CKD in the 5/6 nephrectomy mouse model
Cited by: 14
Author(s): Oleg Karaduta, Galina Glazko, Zeljko Dvanajscak, John M. Arthur, Samuel G. Mackintosh, Lisa Orr, Yasir Rahmatallah, Laxmi Yeruva, Alan J. Tackett, Boris Zybailov
Software Mentions: 1
Published: about 4 years ago

10.14814/phy2.14731

Profiling plasma‐extracellular vesicle proteins and microRNAs in diabetes onset in middle‐aged male participants in the ELSA‐Brasil study
Cited by: 8
Author(s): Laureane Nunes Masi, Paulo A Lotufo, Frederico Moraes Ferreira, Alice Cristina Rodrigues, Tamires Duarte Afonso Serdan, Talita Souza‐Siqueira, Aécio Assunção Braga, Magda Elizabeth Graciano Saldarriaga, Tatiana Carolina Alba-Loureiro, Fernanda Teixeira Borges, Diego Pulzatto Cury, Mário Hiroyuki Hirata, Renata Gorjão, Tania C. Pithon‐Curi, Simão Augusto Lottenberg, Ligia Maria Giongo Fedeli, Helder Takashi Imoto Nakaya, Isabela Judith Martins Benseñor, Rui Curi, Sandro Massao Hirabara
Software Mentions: 1
Published: almost 4 years ago

10.14814/phy2.14608

Comparative plasma proteomics in muscle atrophy during cancer‐cachexia and disuse: The search for atrokines
Cited by: 13
Author(s): Seongkyun Lim, Kirsten R. Dunlap, Megan E. Rosa‐Caldwell, Wesley S. Haynie, Lisa T. Jansen, Tyrone A. Washington
Software Mentions: 1
Published: about 4 years ago

10.14814/phy2.12853

Astrocyte-mediated regulation of multidrug resistance<scp>P</scp>-glycoprotein in fetal and neonatal brain endothelial cells: age-dependent effects
Cited by: 14
Author(s): Stephanie Baello, Majid Iqbal, William Gibb, Stephen G. Matthews
Software Mentions: 1
Published: over 8 years ago

10.1111/pbi.12711

Biochemical characterization of metabolism-based atrazine resistance in<i>Amaranthus tuberculatus</i>and identification of an expressed<i>GST</i>associated with resistance
Cited by: 44
Author(s): Anton F. Evans, Sarah R. O’Brien, Rong Ma, Aaron G. Hager, Chance W. Riggins, Kris N. Lambert, Dean E. Riechers
Software Mentions: 1
Published: over 7 years ago

10.1002/pld3.18

Cross-species complementation reveals conserved functions for EARLY FLOWERING 3 between monocots and dicots
Cited by: 17
Author(s): He Huang, Malia Gehan, Sarah E. Huss, Sophie Alvarez, César Lizárraga, Ellen L. Gruebbling, John Gierer, Michael J. Naldrett, Rebecca K. Bindbeutel, Bradley S. Evans, Todd C. Mockler, Dmitri A. Nusinow
Software Mentions: 1
Published: about 7 years ago