pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1186/s12865-016-0154-z

Cryptic protein-protein interaction motifs in the cytoplasmic domain of MHCI proteins
Cited by: 4
Author(s): Karla K. Frietze, Adlai Pappy, Jack W. Melson, Emily E. O’Driscoll, Carolyn M. Tyler, David H. Perlman, Lisa M. Boulanger
Software Mentions: 1
Published: about 10 years ago

10.1186/s12865-017-0221-0

Mercury alters endogenous phosphorylation profiles of SYK in murine B cells
Cited by: 6
Author(s): Joseph A. Caruso, Nicholas J. Carruthers, Namhee Shin, Randall F. Gill, Paul M. Stemmer, Allen J. Rosenspire
Software Mentions: 1
Published: about 9 years ago

10.1186/s12916-018-1136-1

An exploratory study examining how nano-liquid chromatography–mass spectrometry and phosphoproteomics can differentiate patients with advanced fibrosis and higher percentage collagen in non-alcoholic fatty liver disease
Cited by: 7
Author(s): Zobair M. Younossi, Azza Karrar, Mariaelena Pierobon, Aybike Birerdinc, Maria Stepanova, Dinan Abdelatif, Zahra Younoszai, Thomas L. Jeffers, Sean Felix, Kianoush Jeiran, Alex Hodge, Weidong Zhou, Fanny Monge, Lakshmi Alaparthi, Vikas Chandhoke, Zachary Goodman, Emanuel F. Petricoin
Software Mentions: 1
Published: about 8 years ago

10.1186/s12920-019-0576-6

Population structure and transmission modes of indigenous typhoid in Taiwan
Cited by: 5
Author(s): Kaiyu Wang, De-Jen Lee, Shian-Sen Shie, Chih-Jung Chen
Software Mentions: 1
Published: about 7 years ago

10.1186/s12920-018-0382-6

Differentially expressed proteins in positive versus negative HNSCC lymph nodes
Cited by: 6
Author(s): Alessandra Vidotto, Giovana Mussi Polachini, Marina de Paula-Silva, Sônia Maria Oliani, Tiago Henrique, Rossana Verónica Mendoza López, Patrı́cia Maluf Cury, Fábio Daumas Nunes, J.F Gois-filho, Marcos Brasilino de Carvalho, Andréia Machado Leopoldino, Eloíza H. Tajara
Software Mentions: 1
Published: about 8 years ago

10.1186/s12866-020-02065-2

Differential production and secretion of potentially toxigenic extracellular proteins from hypervirulent Aeromonas hydrophila under biofilm and planktonic culture
Cited by: 13
Author(s): Priscilla C. Barger, Mark R. Liles, Benjamin H. Beck, Joseph C. Newton
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2180-11-245

Biofilm and planktonic pneumococci demonstrate disparate immunoreactivity to human convalescent sera
Cited by: 28
Author(s): Carlos J. Sánchez, Brady J. Hurtgen, Anel Lizcano, Pooja Shivshankar, Garry T. Cole, Carlos J. Orihuela
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2180-14-70

The CJIE1 prophage of Campylobacter jejuni affects protein expression in growth media with and without bile salts
Cited by: 16
Author(s): Clifford G. Clark, Patrick Chong, Stuart McCorrister, Philippe Simon, Matthew Walker, David M. Lee, Kimberly Nguy, Keding Cheng, Matthew W. Gilmour, Garrett Westmacott
Software Mentions: 1
Published: over 12 years ago

10.1186/s12866-020-01964-8

The role of the msaABCR operon in implant-associated chronic osteomyelitis in Staphylococcus aureus USA300 LAC
Cited by: 9
Author(s): Gyan S. Sahukhal, Michelle Tucci, Hamed Benghuzzi, Gerri Wilson, Mohamed O. Elasri
Software Mentions: 1
Published: almost 6 years ago

10.1186/1471-2180-14-164

The oxygen-independent metabolism of cyclic monoterpenes in Castellaniella defragrans 65Phen
Cited by: 18
Author(s): Jan Petasch, Eva-Maria Disch, Stephanie Markert, Dörte Becher, Thomas Schweder, Bruno Hüttel, Richard Reinhardt, Jens Harder
Software Mentions: 1
Published: over 12 years ago

10.1186/s12866-016-0889-y

Identification of Mycobacterium avium subsp. hominissuis secreted proteins using an in vitro system mimicking the phagosomal environment
Cited by: 8
Author(s): Jessica J. J. Chinison, Lia Danelishvili, Rashmi Gupta, Sasha J. Rose, Lmar Babrak
Software Mentions: 1
Published: almost 10 years ago

10.1186/1471-2180-14-48

The Escherichia coli O157:H7 bovine rumen fluid proteome reflects adaptive bacterial responses
Cited by: 9
Author(s): Indira T. Kudva, Thad B. Stanton, John D. Lippolis
Software Mentions: 1
Published: over 12 years ago

10.1186/s12866-015-0549-7

Deciphering the mode of action of a mutant Allium sativum Leaf Agglutinin (mASAL), a potent antifungal protein on Rhizoctonia solani
Cited by: 18
Author(s): Prithwi Ghosh, Amit Roy, Daniel Heß, Anupama Ghosh, Sampa Das
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2180-11-232

A historical and proteomic analysis of botulinum neurotoxin type/G
Cited by: 17
Author(s): Rebecca R. Terilli, Hércules Moura, Adrian R. Woolfitt, Jon C. Rees, David Schieltz, John R. Barr
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2180-10-162

Proteomic expression profiling of Haemophilus influenzae grown in pooled human sputum from adults with chronic obstructive pulmonary disease reveal antioxidant and stress responses
Cited by: 36
Author(s): Jun Qu, Alan J. Lesse, Aimee L. Brauer, Jin-Ru Cao, Steven R. Gill, Timothy F. Murphy
Software Mentions: 1
Published: over 16 years ago

10.1186/s12860-021-00352-y

STAU2 protein level is controlled by caspases and the CHK1 pathway and regulates cell cycle progression in the non-transformed hTERT-RPE1 cells
Cited by: 1
Author(s): Lionel Condé, Yulemi Gónzalez Quesada, Florence Bonnet-Magnaval, Rémy Beaujois, Luc DesGroseillers
Software Mentions: 1
Published: over 5 years ago

10.1186/s12882-021-02246-9

Light chain deposition disease involving kidney and liver in a patient with IgD myeloma
Cited by: 4
Author(s): Takafumi Tsushima, Tomo Suzuki, Toshiki Terao, Daisuke Miura, Kentaro Narita, Masami Takeuchi, Akira Shimuzu, Kosei Matsue
Software Mentions: 1
Published: over 5 years ago

10.1186/s12882-018-1139-3

Analysis of the differential urinary protein profile in IgA nephropathy patients of Uygur ethnicity
Cited by: 12
Author(s): Zhengguang Guo, Zhao Wang, Lu Chen, Shufen Yang, Hui Sun, Reziw, Yu Guo, Wei Sun, Hua Yue
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2202-14-135

Parkin depletion delays motor decline dose-dependently without overtly affecting neuropathology in α-synuclein transgenic mice
Cited by: 6
Author(s): Margot Fournier, Amandine Le Roux, Jean-Luc Garrigue, Marie‐Paule Muriel, Paul Blanche, Hilal A. Lashuel, John P. Anderson, Robin Barbour, Jiping Huang, Sophie Tezenas du Montcel, Alexis Brice, Olga Corti
Software Mentions: 1
Published: almost 13 years ago

10.1186/1471-2202-11-120

Isolation of detergent resistant microdomains from cultured neurons: detergent dependent alterations in protein composition
Cited by: 24
Author(s): Richard A. Williamson, Andrew J. Thompson, Mika Abu, Abdul Hye, Alessia Usardi, Steven Lynham, Brian H. Anderton, Diane P. Hanger
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2415-13-48

Detection of autoantibodies against heat shock proteins and collapsin response mediator proteins in autoimmune retinopathy
Cited by: 21
Author(s): Grażyna Adamus, Robert A. Bonnah, Lori Brown, Larry L. David
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12886-018-0941-9

Quantitative proteomic analysis of aqueous humor from patients with drusen and reticular pseudodrusen in age-related macular degeneration
Cited by: 22
Author(s): Je Hyun Baek, Daehan Lim, Kyu Hyung Park, Jae Byoung Chae, Hyoik Jang, Jonghyun Lee, Hyewon Chung
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-018-1506-z

Towards reducing the immunogenic potential of wheat flour: omega gliadins encoded by the D genome of hexaploid wheat may also harbor epitopes for the serious food allergy WDEIA
Cited by: 19
Author(s): Susan B. Altenbach, Han-Chang Chang, Annamaria Simon-Buss, You-Ran Jang, Sandra Denery-Papini, Florence Pineau, Yong Gu, Naxin Huo, Sung-Hun Lim, Kang Chen, Jong-Yeol Lee
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12870-015-0649-4

Transgene silencing of sucrose synthase in alfalfa (Medicago sativa L.) stem vascular tissue suggests a role for invertase in cell wall cellulose synthesis
Cited by: 16
Author(s): Deborah A. Samac, Bruna Bucciarelli, Stephen R. Miller, Sheng-Hsin Yang, Jamie A. O’Rourke, Sanghyun Shin, Carroll P. Vance
Software Mentions: 1
Published: almost 11 years ago

10.1186/1471-2229-10-7

Analysis of expressed sequence tags from a single wheat cultivar facilitates interpretation of tandem mass spectrometry data and discrimination of gamma gliadin proteins that may play different functional roles in flour
Cited by: 39
Author(s): Susan B. Altenbach, William H. Vensel, Frances M. DuPont
Software Mentions: 1
Published: over 16 years ago

10.1186/s12870-014-0324-1

The OsSec18 complex interacts with P0(P1-P2)2 to regulate vacuolar morphology in rice endosperm cell
Cited by: 6
Author(s): Yunfang Sun, Tingting Ning, Zhenwei Liu, Jianlei Pang, Daiming Jiang, Zhang Guo, Gaoyuan Song, Daichang Yang
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2229-10-144

Increasing the amylose content of durum wheat through silencing of the SBEIIagenes
Cited by: 139
Author(s): Francesco Sestili, Michela Janni, Angela Doherty, Ermelinda Botticella, R. D’Ovidio, Stefania Masci, Huw Jones, D. Lafiandra
Software Mentions: 1
Published: about 16 years ago

10.1186/1471-2229-12-69

Development of high amylose wheat through TILLING
Cited by: 187
Author(s): Ann J. Slade, Cate McGuire, Dayna Loeffler, Jessica Mullenberg, Wayne S. Skinner, Gia Fazio, Aaron Holm, Kali M Brandt, Michael N. Steine, John F Goodstal, Vic Knauf
Software Mentions: 1
Published: over 14 years ago

10.1186/1471-2229-11-85

RBCS1 expression in coffee: Coffea orthologs, Coffea arabica homeologs, and expression variability between genotypes and under drought stress
Cited by: 40
Author(s): Pierre Marraccini, Luciana Pereira Freire, Gabriel Sérgio Costa Alves, Natália Gomes Vieira, Felipe Vinecky, Sonia Elbelt, Humberto J.O. Ramos, Christophe Montagnon, Luiz Gonzaga Esteves Vieira, Thierry Leroy, David Pot, Vânia Aparecida Silva, Gustavo Costa Rodrigues, Alan Carvalho Andrade
Software Mentions: 1
Published: over 15 years ago

10.1186/1471-2229-14-64

An asparagine residue at the N-terminus affects the maturation process of low molecular weight glutenin subunits of wheat endosperm
Cited by: 14
Author(s): Eleonora Egidi, Francesco Sestili, Michela Janni, R. D’Ovidio, D. Lafiandra, Aldo Ceriotti, William H. Vensel, Donald D. Kasarda, Stefania Masci
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2466-14-110

Comprehensive multiplexed protein quantitation delineates eosinophilic and neutrophilic experimental asthma
Cited by: 8
Author(s): Maria Bergquist, Sofia Jonasson, Josephine Hjoberg, Göran Hedenstierna, Joerg Hanrieder
Software Mentions: 1
Published: about 12 years ago

10.1186/1756-0500-6-55

Purification of native HBHA from Mycobacterium avium subsp. paratuberculosis
Cited by: 9
Author(s): Louise Lefrançois, Christelle Bodier, Sophie Lecher, Florence Gilbert, Thierry Cochard, Grégoire Harichaux, Valérie Labas, Ana Paula Teixeira-Gomes, Dominique Raze, Camille Locht, Franck Biet
Software Mentions: 1
Published: over 13 years ago

10.1186/1756-0500-4-242

The spectrum of low molecular weight alpha-amylase/protease inhibitor genes expressed in the US bread wheat cultivar Butte 86
Cited by: 77
Author(s): Susan B. Altenbach, William H. Vensel, Frances M. DuPont
Software Mentions: 1
Published: about 15 years ago

10.1186/1756-0500-6-232

Changes in male rat urinary protein profile during puberty: a pilot study
Cited by: 14
Author(s): Ariane Vettorazzi, Robin Wait, Judit Nagy, J Ignacio Monreal, Peter G. Mantle
Software Mentions: 1
Published: over 13 years ago

10.1186/s13104-019-4749-3

Contaminating reactivity of a monoclonal CCAAT/Enhancer Binding Protein β antibody in differentiating myoblasts
Cited by: 1
Author(s): Hamood AlSudais, Nadine Wiper‐Bergeron
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13104-018-3750-6

Time-course mass spectrometry data of adipose mesenchymal stem cells acquiring chondrogenic phenotype
Cited by: 3
Author(s): Jeffrey R. Janus, Stephen G. Voss, Benjamin J. Madden, M. Cristine Charlesworth, Michael S. Oldenburg, Dale C. Ekbom, Serban San‐Marina
Software Mentions: 1
Published: about 8 years ago

10.1186/1752-0509-6-50

A systems biology approach reveals common metastatic pathways in osteosarcoma
Cited by: 46
Author(s): Ricardo J. Flores, Yiting Li, Alexander Yu, Jianhe Shen, Pulivarthi H. Rao, Serrine S. Lau, Marina Vannucci, Ching C. Lau, Tsz-Kwong Man
Software Mentions: 1
Published: over 14 years ago

10.1186/s12894-020-00751-x

Proteomic analysis of bladder biopsies from interstitial cystitis/bladder pain syndrome patients with and without Hunner’s lesions reveals differences in expression of inflammatory and structural proteins
Cited by: 6
Author(s): Elijah Ward, Sarah N. Bartolone, Michael B. Chancellor, Kenneth M. Peters, Laura E. Lamb
Software Mentions: 1
Published: almost 6 years ago

10.1186/1746-6148-9-141

Characterization of recombinant human and bovine thyroid-stimulating hormone preparations by mass spectrometry and determination of their endotoxin content
Cited by: 2
Author(s): Sandra Schaefer, Paul O. Hassa, Nadja S Sieber-Ruckstuhl, P Marion, Claudia E Reusch, Bernd Roschitzki, Felicitas S Boretti
Software Mentions: 1
Published: about 13 years ago

10.1186/1746-6148-8-179

Plasma proteomics shows an elevation of the anti-inflammatory protein APOA-IV in chronic equine laminitis
Cited by: 13
Author(s): Samantha M. Steelman, Bhanu P. Chowdhary
Software Mentions: 1
Published: over 14 years ago

10.1186/1746-6148-9-116

Comparative analysis of the surface exposed proteome of two canine osteosarcoma cell lines and normal canine osteoblasts
Cited by: 8
Author(s): Milan Milovancev, Ian Hilgart-Martiszus, Michael J. McNamara, Cheri P. Goodall, Bernard Séguin, Shay Bracha, Samanthi Wickramasekara
Software Mentions: 1
Published: over 13 years ago

10.1007/s00395-019-0715-4

Fibroblast polarization over the myocardial infarction time continuum shifts roles from inflammation to angiogenesis
Cited by: 105
Author(s): Alan J. Mouton, Yonggang Ma, O. J. Gonzalez, Michael J. Daseke, Elizabeth R. Flynn, Tom C. Freeman, Michael R. Garrett, Kristine Y. DeLeon‐Pennell, Merry L. Lindsey
Software Mentions: 1
Published: over 7 years ago

10.21769/BioProtoc.3258

Cross-linking, Immunoprecipitation and Proteomic Analysis to Identify Interacting Proteins in Cultured Cells
Cited by: 9
Author(s): Hao Wang, Meiling He, Belinda Willard, Qingyu Wu
Software Mentions: 1
Published: over 7 years ago

10.1016/j.bbrep.2016.09.003

Mapping ubiquitination sites of S. cerevisiae Mcm10
Cited by: 3
Author(s): Tianji Zhang, Brandy L. Fultz, Sapna Das-Bradoo, Anja‐Katrin Bielinsky
Software Mentions: 1
Published: almost 10 years ago

10.1042/BCJ20190944

A complex comprising C15ORF41 and Codanin-1: the products of two genes mutated in congenital dyserythropoietic anaemia type I (CDA-I)
Cited by: 8
Author(s): Maithili Shroff, Axel Knebel, Rachel Toth, John Rouse
Software Mentions: 1
Published: over 6 years ago

10.1042/BCJ20160387

Gsk3β and Tomm20 are substrates of the SCFFbxo7/PARK15 ubiquitin ligase associated with Parkinson's disease
Cited by: 36
Author(s): Felipe Roberti Teixeira, Suzanne J. Randle, Sapana R. Patel, T.E.T. Mevissen, Grasilda Zenkeviciutė, Tie Koide, David Komander, Heike Laman
Software Mentions: 1
Published: almost 10 years ago

10.1042/BCJ20160686

Comparative proteomic assessment of matrisome enrichment methodologies
Cited by: 35
Author(s): Lukáš Krásný, Angela Paul, Patty T. Wai, Beatrice A. Howard, Rachael Natrajan, Paul H. Huang
Software Mentions: 1
Published: almost 10 years ago

10.3390/bioengineering8080116

Modulation of Synthetic Tracheal Grafts with Extracellular Matrix Coatings
Cited by: 5
Author(s): Lumei Liu, Sayali Dharmadhikari, Robert A. Pouliot, Michael M. Li, Peter M Minneci, Zheng-Hong Tan, Kimberly M. Shontz, Jed Johnson, Susan D. Reynolds, Christopher K. Breuer, Daniel J. Weiss, Tendy Chiang
Software Mentions: 1
Published: about 5 years ago

10.1242/bio.040311

Acid Sphingomyelinase regulates the localization and trafficking of palmitoylated proteins
Cited by: 4
Author(s): Xiahui Xiong, Chia-Fang Lee, Wenjing Li, Jiekai Yu, Linyu Zhu, Yong-Soon Kim, Hui Zhang, Hong Sun
Software Mentions: 1
Published: over 7 years ago

10.1242/bio.021162

Identification of a novel putative interaction partner of the nucleoporin ALADIN
Cited by: 16
Author(s): Ramona Jühlen, Dana Landgraf, Angela Huebner, Katrin Koehler
Software Mentions: 1
Published: almost 10 years ago

10.3390/biology8030053

ApoA-I-Mediated Lipoprotein Remodeling Monitored with a Fluorescent Phospholipid
Cited by: 6
Author(s): Edward B. Neufeld, Masaki Satō, Scott M. Gordon, Vinay Durbhakula, Nicolás Francone, Angel Aponte, Gizem Yilmaz, Denis Sviridov, Maureen Sampson, Jingrong Tang, Milton Pryor, Alan T. Remaley
Software Mentions: 1
Published: about 7 years ago

10.1155/2019/4165735

Quantitative Proteomic Analyses of a Pathogenic Strain and Its Highly Passaged Attenuated Strain ofMycoplasma hyopneumoniae
Cited by: 5
Author(s): Sha Li, Liurong Fang, Wei Liu, Tao Song, Fuwei Zhao, Ruoxi Zhang, Dan Wang, Shaobo Xiao
Software Mentions: 1
Published: about 7 years ago

10.1155/2015/208017

Secretome Identifies Tenascin-X as a Potent Marker of Ovarian Cancer
Cited by: 10
Author(s): M. Kramer, Sandra Pierredon, Pascale Ribaux, Jean-Christophe Tille, Patrick Petignat, Marie Cohen
Software Mentions: 1
Published: over 11 years ago

10.1155/2017/7508316

Proteomic Analysis of Liver Proteins in a Rat Model of Chronic Restraint Stress-Induced Depression
Cited by: 8
Author(s): Cong Liu, Zhengguang Guo, Ronghua Zhao, Wei Sun, Ming Xie
Software Mentions: 1
Published: over 9 years ago

10.1155/2014/810562

Age and SPARC Change the Extracellular Matrix Composition of the Left Ventricle
Cited by: 36
Author(s): Lisandra E. de Castro Brás, Hiroe Toba, Catalin F. Baicu, Michael R. Zile, Susan T. Weintraub, Merry L. Lindsey, Amy D. Bradshaw
Software Mentions: 1
Published: over 12 years ago

10.3390/biomedicines9010008

Similarities and Differences in Extracellular Vesicle Profiles between Ischaemic Stroke and Myocardial Infarction
Cited by: 13
Author(s): Laura Otero-Ortega, Elisa Alonso-López, María Pérez‐Mato, Fernando Laso-García, Mari Carmen Gómez-de Frutos, Luke Diekhorst, Marı́a Laura Garcı́a-Bermejo, Elisa Conde-Moreno, Blanca Fuentes, María Alonso de Leciñana, Eduardo Armada, Lorena Buiza-Palomino, Exuperio Díez–Tejedor, María Gutiérrez-Fernández
Software Mentions: 1
Published: over 5 years ago

10.3390/biomedicines9070786

Circulating Extracellular Vesicle Proteins and MicroRNA Profiles in Subcortical and Cortical-Subcortical Ischaemic Stroke
Cited by: 14
Author(s): Laura Otero-Ortega, Elisa Alonso-López, María Pérez‐Mato, Fernando Laso-García, Mari Carmen Gómez-de Frutos, Luke Diekhorst, Marı́a Laura Garcı́a-Bermejo, Elisa Conde-Moreno, Blanca Fuentes, María Alonso de Leciñana, Susana B. Bravo, Exuperio Díez–Tejedor, María Gutiérrez-Fernández
Software Mentions: 1
Published: about 5 years ago

10.3390/biom9090504

Integrative Analysis of the Core Fruit Lignification Toolbox in Pear Reveals Targets for Fruit Quality Bioengineering
Cited by: 14
Author(s): Yunpeng Cao, Xiaoxu Li, Lan Jiang
Software Mentions: 1
Published: about 7 years ago

10.3390/biom3020270

Overcoming Challenges and Opening New Opportunities in Glycoproteomics
Cited by: 5
Author(s): Ten‐Yang Yen, Sucharita Dutta, Christina Litsakos-Cheung, Alejandro A. Corona, Leslie C. Timpe, Bruce A. Macher
Software Mentions: 1
Published: over 13 years ago

10.3390/biom10081126

Structure-Antifouling Activity Relationship and Molecular Targets of Bio-Inspired(thio)xanthones
Cited by: 20
Author(s): Joana R. Almeida, Andreia Palmeira, Alexandre Campos, Isabel Cunha, Micaela Freitas, Aldo Barreiro Felpeto, Maria V. Turkina, Vı́tor Vasconcelos, Madalena Pinto, Marta Correia-da-Silva, Emı́lia Sousa
Software Mentions: 1
Published: about 6 years ago

10.3390/biom10060820

An Isoform of the Oncogenic Splice Variant AIMP2-DX2 Detected by a Novel Monoclonal Antibody
Cited by: 1
Author(s): Dae Gyu Kim, Tin Nguyen, Nam Hoon Kwon, Junsik Sung, Semi Lim, Eun Joo Kang, Jihye Lee, Woo Young Seo, Arum Kim, Yoon Soo Chang, Hyunbo Shim, Sung Hoon Kim
Software Mentions: 1
Published: over 6 years ago

10.1007/s41048-018-0055-1

Molecular architecture of mouse and human pancreatic zymogen granules: protein components and their copy numbers
Cited by: 3
Author(s): JinSook Lee, Joseph A. Caruso, Garrett Hubbs, Patricia M. Schnepp, James H. Woods, Jingye Fang, Chunying Li, Kezhong Zhang, Paul M. Stemmer, Bhanu P. Jena, Xuequn Chen
Software Mentions: 1
Published: over 8 years ago

10.1042/BSR20150220

Human fallopian tube proteome shows high coverage of mesenchymal stem cells associated proteins
Cited by: 10
Author(s): Chenyuan Wang, Yang Liu, Cheng Chang, Songfeng Wu, Jie Gao, Yang Zhang, Yingjie Chen, Fan Zhong, Gaopi Deng
Software Mentions: 1
Published: over 10 years ago

10.1042/BSR20203544

Comparative analysis of extracellular proteomes reveals putative effectors of the boxwood blight pathogens, Calonectria henricotiae and C. pseudonaviculata
Cited by: 3
Author(s): Xiao Yang, Michael B. McMahon, Sowmya Ramachandran, Wesley M. Garrett, Nicholas LeBlanc, Jo Anne Crouch, Nina Shishkoff, Douglas G. Luster
Software Mentions: 1
Published: over 5 years ago

10.1042/BSR20190395

Proteomic screening of plasma identifies potential noninvasive biomarkers associated with significant/advanced fibrosis in patients with nonalcoholic fatty liver disease
Cited by: 15
Author(s): Wei Hou, Michael G. Janech, Philip M. Sobolesky, Alison M. Bland, Salma Samsuddin, William Alazawi, Wing Kin Syn
Software Mentions: 1
Published: over 6 years ago

10.1186/s13068-014-0151-5

Identification and characterization of core cellulolytic enzymes from Talaromyces cellulolyticus (formerly Acremonium cellulolyticus) critical for hydrolysis of lignocellulosic biomass
Cited by: 61
Author(s): Hiroyuki Inoue, Stephen R. Decker, Larry E. Taylor, Shinichi Yano, Shigeki Sawayama
Software Mentions: 1
Published: almost 12 years ago

10.1186/s13068-016-0580-4

Mapping N-linked glycosylation of carbohydrate-active enzymes in the secretome of Aspergillus nidulans grown on lignocellulose
Cited by: 21
Author(s): Marcelo Ventura Rubio, Mariane Paludetti Zubieta, João Paulo L. Franco Cairo, Felipe Calzado, Adriana Franco Paes Leme, Fábio M. Squina, Rolf A. Prade, André Damásio
Software Mentions: 1
Published: about 10 years ago

10.1186/1754-6834-3-22

Rapid optimization of enzyme mixtures for deconstruction of diverse pretreatment/biomass feedstock combinations
Cited by: 142
Author(s): Goutami Banerjee, Suzana Car, John S. Scott-Craig, Melissa S. Borrusch, Jonathan D. Walton
Software Mentions: 1
Published: almost 16 years ago

10.1186/s13068-016-0525-y

Exploring glycoside hydrolases and accessory proteins from wood decay fungi to enhance sugarcane bagasse saccharification
Cited by: 37
Author(s): Fernanda Valadares, Thiago Augusto Gonçalves, Dayelle S. P. O. Gonçalves, Fernando Segato, Elisson Romanel, Adriane M. F. Milagres, Fábio M. Squina, André Ferraz
Software Mentions: 1
Published: over 10 years ago

10.1186/s13068-016-0518-x

Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199
Cited by: 55
Author(s): Rubén López-Mondejar, Daniela Zühlke, Tomáš Větrovský, Dörte Becher, Katharina Riedel, Petr Baldrián
Software Mentions: 1
Published: over 10 years ago

10.1186/1754-6834-5-52

A time course analysis of the extracellular proteome of Aspergillus nidulans growing on sorghum stover
Cited by: 64
Author(s): Sayali Saykhedkar, Anamika Ray, Patricia Ayoubi-Canaan, Steven D. Hartson, Rolf A. Prade, Andrew J. Mort
Software Mentions: 1
Published: about 14 years ago

10.1186/s13068-016-0476-3

Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass
Cited by: 57
Author(s): Willian Daniel Hahn Schneider, Thiago Augusto Gonçalves, Cristiane Uchima, Matthew Brian Couger, Rolf A. Prade, Fábio M. Squina, Aldo José Pinheiro Dillon, Marli Camassola
Software Mentions: 1
Published: over 10 years ago

10.1186/1754-6834-5-54

Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions
Cited by: 79
Author(s): Shara McClendon, Tanveer S. Batth, Young-Mo Kim, Paul D. Adams, Blake A. Simmons, Steven W. Singer
Software Mentions: 1
Published: about 14 years ago

10.1186/s13068-021-01945-7

Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600
Cited by: 10
Author(s): Fernanda Lopes de Figueiredo, Ana Carolina Piva de Oliveira, César Rafael Fanchini Terrasan, Thiago Augusto Gonçalves, Jaqueline Aline Gerhardt, Geizecler Tomazetto, Gabriela Félix Persinoti, Marcelo Ventura Rubio, Jennifer Andrea Tamayo Peña, Michelle Fernandes Araújo, Maria Augusta de Carvalho Silvello, Telma Teixeira Franco, Sarita Cândida Rabelo, Rosana Goldbeck, Fábio M. Squina, André Damásio
Software Mentions: 1
Published: over 5 years ago

10.1038/bcj.2015.39

A novel antibody–drug conjugate targeting SAIL for the treatment of hematologic malignancies
Cited by: 15
Author(s): S Y Kim, J.M.J. Theunissen, J Balibalos, Sindy Liao-Chan, Michael Babcock, Tiffany Wong, Belinda Cairns, Deyarina González, Edward Htun van der Horst, Michel Perez, Zoia Levashova, Lawrence Chinn, Joseph A. D’Alessio, Mark R. Flory, Abel Bermudez, David Y. Jackson, Edward Ha, Jorge Monteon, Maureen Bruhns, G Chen, T-S Migone
Software Mentions: 1
Published: over 11 years ago

10.1016/j.bonr.2019.100238

Early urine proteome changes in an implanted bone cancer rat model
Cited by: 9
Author(s): Ting Wang, Lujun Li, Weiwei Qin, Youhe Gao
Software Mentions: 1
Published: over 6 years ago

10.3390/brainsci8090167

The Healing Effect of Human Milk Fat Globule-EGF Factor 8 Protein (MFG-E8) in A Rat Model of Parkinson’s Disease
Cited by: 7
Author(s): Yoshiki Nakashima, Chika Miyagi-Shiohira, Hirofumi Noguchi, Takeshi Ômasa
Software Mentions: 1
Published: about 8 years ago

10.1186/s13058-020-01363-x

Extracellular vesicles from young women’s breast cancer patients drive increased invasion of non-malignant cells via the Focal Adhesion Kinase pathway: a proteomic approach
Cited by: 21
Author(s): Kimberly R. Jordan, Jill Hall, Troy Schedin, Michelle Borakove, Jenny J. Xian, Monika Dzieciątkowska, Traci R. Lyons, Pepper Schedin, Kirk C. Hansen, Virginia F. Borges
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13058-019-1228-7

Inhibition of the histone demethylase, KDM5B, directly induces re-expression of tumor suppressor protein HEXIM1 in cancer cells
Cited by: 16
Author(s): Monica M. Montano, I‐Ju Yeh, Yinghua Chen, Chris Hernandez, Janna Kiselar, María de la Fuente, Adriane M. Lawes, Marvin T. Nieman, Philip D. Kiser, James W. Jacobberger, Agata A. Exner, Matthew C. Lawes
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13058-020-01373-9

Shotgun proteomics coupled to nanoparticle-based biomarker enrichment reveals a novel panel of extracellular matrix proteins as candidate serum protein biomarkers for early-stage breast cancer detection
Cited by: 10
Author(s): Claudia Fredolini, Khyatiben V. Pathak, Luisa Paris, Kristina Chapple, Kristine Tsantilas, Matthew Rosenow, Tony Tegeler, Krystine Garcia-Mansfield, Davide Tamburro, Weidong Zhou, Paul Russo, Samuele Massarut, Francesco Facchiano, Claudio Belluco, Ruggero De Maria, Enrico Garaci, Lance A. Liotta, Emanuel F. Petricoin, Patrick Pirrotte
Software Mentions: 1
Published: almost 6 years ago

10.1186/s13058-016-0697-1

Activation of IGF1R/p110β/AKT/mTOR confers resistance to α-specific PI3K inhibition
Cited by: 61
Author(s): Cédric Leroy, Pedro Marques Ramos, Karen Cornille, Débora Bonenfant, Christine Fritsch, Hans Voshol, Mohamed Bentires‐Alj
Software Mentions: 1
Published: over 10 years ago

10.1186/bcr3207

17beta-hydroxysteroid dehydrogenase type 1 modulates breast cancer protein profile and impacts cell migration
Cited by: 27
Author(s): Juliette A. Aka, Mouna Zerradi, François Houle, Jacques Huot, Sheng‐Xiang Lin
Software Mentions: 1
Published: over 14 years ago

10.1186/s13058-016-0741-1

CUB domain-containing protein 1 and the epidermal growth factor receptor cooperate to induce cell detachment
Cited by: 26
Author(s): Mary E. Law, Renan B. Ferreira, Bradley J. Davis, Paul J. Higgins, Jae-Sung Kim, Ronald K. Castellano, Sixue Chen, Hendrik Luesch, Brian K. Law
Software Mentions: 1
Published: about 10 years ago

10.1186/s12935-018-0625-9

Sulbactam-enhanced cytotoxicity of doxorubicin in breast cancer cells
Cited by: 43
Author(s): Shao-Hsuan Wen, Shey-Chiang Su, Bo-Huang Liou, Cheng-Yu Lin, Kuan‐Rong Lee
Software Mentions: 1
Published: about 8 years ago

10.1002/cam4.1225

Dynamic changes of urine proteome in a Walker 256 tumor-bearing rat model
Cited by: 46
Author(s): Jianhuang Wu, Zhengguang Guo, Youhe Gao
Software Mentions: 1
Published: almost 9 years ago

10.1002/cam4.2240

Dynamic urinary proteomic analysis in a Walker 256 intracerebral tumor model
Cited by: 14
Author(s): Linpei Zhang, Yuqiu Li, Wenqi Meng, Yanying Ni, Youhe Gao
Software Mentions: 1
Published: over 7 years ago

10.1002/cam4.1885

Exosome proteomic analyses identify inflammatory phenotype and novel biomarkers in African American prostate cancer patients
Cited by: 63
Author(s): Gatikrushna Panigrahi, Prakash Priyadarshi Praharaj, Hiroki Kittaka, Asit Ranjan Mridha, Olen M. Black, Ravi Singh, Roger S. Mercer, Adrie van Bokhoven, Kathleen C. Torkko, Chapla Agarwal, Rajesh Agarwal, Zakaria Y. Abd Elmageed, Hariom Yadav, Santosh K. Mishra, Gagan Deep
Software Mentions: 1
Published: over 7 years ago

10.1155/2015/320120

Upper Gastrointestinal Bleeding from Gastric Amyloidosis in a Patient with Smoldering Multiple Myeloma
Cited by: 8
Author(s): Mihajlo Gjeorgjievski, Treta Purohit, Mitual Amin, Paul J. Kurtin, Mitchell S. Cappell
Software Mentions: 1
Published: over 11 years ago

10.1038/s41374-020-0403-x

Hemoglobin oxidation generates globin-derived peptides in atherosclerotic lesions and intraventricular hemorrhage of the brain, provoking endothelial dysfunction
Cited by: 30
Author(s): Niké Posta, Éva Csősz, Melinda Oros, Dávid Pethő, László Potor, Gergő Kalló, Zoltán Hendrik, Katalin Éva Sikura, Gábor Méhes, Csaba Tóth, József Posta, György Balla, József Balla
Software Mentions: 1
Published: about 6 years ago

10.3390/life10120311

Erythromycin Treatment of Brassica campestris Seedlings Impacts the Photosynthetic and Protein Synthesis Pathways
Cited by: 3
Author(s): Young-Eun Yoon, Hyun Min Cho, Dong-Won Bae, Sung Joong Lee, Hyeonji Choe, Min Chul Kim, Mi Sun Cheong, Yong-Bok Lee
Software Mentions: 1
Published: almost 6 years ago

10.3390/life11010021

Arabidopsis Plant Natriuretic Peptide Is a Novel Interactor of Rubisco Activase
Cited by: 3
Author(s): Ilona Turek, Chris Gehring, Helen Ruth Irving
Software Mentions: 1
Published: over 5 years ago

10.26508/lsa.201900547

The iron–sulfur helicase DDX11 promotes the generation of single-stranded DNA for CHK1 activation
Cited by: 15
Author(s): Anna Katharina Simon, Sandra Kummer, Sonja Wild, Aleksandra Lezaja, Federico Teloni, Stanisław K. Jóźwiakowski, Matthias Altmeyer, Kerstin Gari
Software Mentions: 1
Published: over 6 years ago

10.26508/lsa.202000742

Leishmania-infected macrophages release extracellular vesicles that can promote lesion development
Cited by: 23
Author(s): Anna Gioseffi, Timothy Hamerly, Kha Van, Naixin Zhang, Rhoel R. Dinglasan, Phillip A. Yates, Peter E. Kima
Software Mentions: 1
Published: almost 6 years ago

10.1186/1475-2875-10-318

Mitochondrial NAD+-dependent malic enzyme from Anopheles stephensi: a possible novel target for malaria mosquito control
Cited by: 8
Author(s): Jennifer Pon, Eleonora Napoli, Shirley Luckhart, Cecilia R Giulivi
Software Mentions: 1
Published: almost 15 years ago

10.1186/s12936-015-0655-x

Effects of cyclin-dependent kinase inhibitor Purvalanol B application on protein expression and developmental progression in intra-erythrocytic Plasmodium falciparum parasites
Cited by: 5
Author(s): Kristen M. Bullard, Carolyn J. Broccardo, Susan M. Keenan
Software Mentions: 1
Published: over 11 years ago

10.3390/md17010002

Spinochrome D Attenuates Doxorubicin-Induced Cardiomyocyte Death via Improving Glutathione Metabolism and Attenuating Oxidative Stress
Cited by: 31
Author(s): Chang Shin Yoon, Hyoung Kyu Kim, Natalia P. Mishchenko, Е. А. Васильева, Sergey A. Fedoreyev, Valentin A. Stonik, Jin Han
Software Mentions: 1
Published: almost 8 years ago

10.3390/md17070413

Identification of A Novel Antibacterial Peptide from Atlantic Mackerel belonging to the GAPDH-Related Antimicrobial Family and Its In Vitro Digestibility
Cited by: 22
Author(s): Clément Offret, Ismaı̈l Fliss, Laurent Bazinet, André Marette, Lucie Beaulieu
Software Mentions: 1
Published: about 7 years ago

10.3390/md15080246

The Neuroprotective Marine Compound Psammaplysene A Binds the RNA-Binding Protein HNRNPK
Cited by: 8
Author(s): Marco Boccitto, Nayoung Lee, Satoshi Sakamoto, Lynn A. Spruce, Hiroshi Handa, Jon Clardy, Steven H. Seeholzer, Robert G. Kalb
Software Mentions: 1
Published: about 9 years ago

10.3390/md17080436

Transcriptomic and Proteomic Analysis of the Tentacles and Mucus of Anthopleura dowii Verrill, 1869
Cited by: 18
Author(s): Santos Ramírez-Carreto, Rosario Vera-Estrella, Tobías Portillo-Bobadilla, Alexei F. Licea-Navarro, Johanna Bernáldez-Sarabia, E. Rudiño-Piñera, Jérôme Verleyen, Estefanía Rodríguez, Claudia Rodríguez-Almazán
Software Mentions: 1
Published: about 7 years ago

10.3390/ma13225187

Proteomic Analysis of Porcine-Derived Collagen Membrane and Matrix
Cited by: 9
Author(s): Jung Seok Lee, Goran Mitulović, Layla Panahipour, Reinhard Gruber
Software Mentions: 1
Published: almost 6 years ago

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