pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.18632/oncotarget.11698

FAM122A, a new endogenous inhibitor of protein phosphatase 2A
Cited by: 24
Author(s): Li Fan, Man-Hua Liu, Meng Guo, Chuan-Xi Hu, Zhao-Wen Yan, Jing Chen, Guoqiang Chen, Ying Huang
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.12003

Evidence that vitronectin is a potent migration-enhancing factor for cancer cells chaperoned by fibrinogen: a novel view of the metastasis of cancer cells to low-fibrinogen lymphatics and body cavities
Cited by: 20
Author(s): Gabriela Schneider, Ewa Bryndza, Agata Poniewierska-Baran, Karol Serwin, Malwina Suszyńska, Zachariah Payne Sellers, Michael L. Merchant, Alagammai Kaliappan, Janina Ratajczak, Magda Kucia, Nichola C. Garbett, Mariusz Z. Ratajczak
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.12586

Mitotic arrest-induced phosphorylation of Mcl-1 revisited using two-dimensional gel electrophoresis and phosphoproteomics: nine phosphorylation sites identified
Cited by: 8
Author(s): Rong Chu, Sarah E. Alford, Katherine Hart, Anisha Kothari, Samuel G. Mackintosh, Matthew R. Kovak, Timothy C. Chambers
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.13341

Different non-synonymous polymorphisms modulate the interaction of the WRN protein to its protein partners and its enzymatic activities
Cited by: 3
Author(s): Jean-Philippe Gagné, Sophie Lachapelle, Chantal Garand, Serges P. Tsofack, Yan Coulombe, Marie-Christine Caron, Guy G. Poirier, Jean–Yves Masson, Michel Lebel
Software Mentions: 1
Published: about 9 years ago

10.18632/oncotarget.14964

Exosome secretome and mediated signaling in breast cancer patients with nontuberculous mycobacterial disease
Cited by: 15
Author(s): Julie V. Philley, Anbarasu Kannan, David E. Griffith, Megan S. Devine, Jeana L. Benwill, Richard J. Wallace, Barbara A. Brown‐Elliott, Foram Thakkar, Varsha Taskar, James G. Fox, Ammar Alqaid, Hernaina Bains, Sudeep Gupta, Santanu Dasgupta
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.15184

Autophagy is highly targeted among host comparative proteomes during infection with different virulent RABV strains
Cited by: 9
Author(s): Ling Li, Hongli Jin, Hualei Wang, Zongjie Cao, Na Feng, Jianzhong Wang, Yongkun Zhao, Xiaodong Zheng, Pengfei Hou, Nan Li, Hang Chi, Pei Huang, Cuicui Jiao, Qian Li, Lina Wang, Tiecheng Wang, Wenzhao Sun, Yuwei Gao, Changchun Tu, Guang‐Wan Hu, Cuiling Wang, Xianzhu Xia
Software Mentions: 1
Published: almost 9 years ago

10.18632/oncotarget.17579

Proteomic analysis of cerebrospinal fluid from children with central nervous system tumors identifies candidate proteins relating to tumor metastatic spread
Cited by: 22
Author(s): Filippo Spreafico, Italia Bongarzone, Sara Pizzamiglio, R. Magni, Elena Taverna, Maida De Bortoli, Chiara Maura Ciniselli, Elena Barzanò, Veronica Biassoni, Alessandra Luchini, Lance A. Liotta, Weidong Zhou, Michele Signore, Paolo Verderio, Maura Massimino
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.11111

Modulation of paracrine signaling by CD9 positive small extracellular vesicles mediates cellular growth of androgen deprived prostate cancer
Cited by: 56
Author(s): Carolina Soekmadji, James D. Riches, Pamela J. Russell, Jayde E. Ruelcke, Stephen McPherson, Chenwei Wang, Christopher M. Hovens, Niall M. Corcoran, Michelle M. Hill, Colleen C. Nelson
Software Mentions: 1
Published: over 9 years ago

10.18632/oncotarget.18680

Endoplasmic reticulum aminopeptidase 2 involvement in metastasis of oral cavity squamous cell carcinoma discovered by proteome profiling of primary cancer cells
Cited by: 11
Author(s): I‐Chun Kuo, Huang‐Kai Kao, Yen‐Lin Huang, Chun-I Wang, Jui-Shan Yi, Ying Li, Chun‐Ta Liao, Tzu‐Chen Yen, Chih‐Ching Wu, Kai‐Ping Chang
Software Mentions: 1
Published: over 8 years ago

10.18632/oncotarget.21821

Identification of cellular genes and pathways important for tumorigenicity of hepatocellular carcinoma cell lines by proteomic profiling
Cited by: 3
Author(s): Ali Zamani, Huahao Fan, Guangxiang Luo
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.21985

Cell surface Thomsen-Friedenreich proteome profiling of metastatic prostate cancer cells reveals potential link with cancer stem cell-like phenotype
Cited by: 14
Author(s): Li Feng, Olga V. Glinskii, Brian Mooney, Kate Rittenhouse‐Olson, Kenneth J. Pienta, Vladislav V. Glinsky
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.20761

Comparison of Echinococcus multilocularis and Echinococcus granulosus hydatid fluid proteome provides molecular strategies for specialized host-parasite interactions
Cited by: 19
Author(s): Chuljin Ahn, Jeong‐Geun Kim, Xiumin Han, Insug Kang, Yoon Kong
Software Mentions: 1
Published: about 8 years ago

10.18632/oncotarget.23583

Proteomic profiling of antibody-inducing immunogens in tumor tissue identifies PSMA1, LAP3, ANXA3, and maspin as colon cancer markers
Cited by: 28
Author(s): Qian Yang, Michael H. A. Roehrl, Julia Y. Wang
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.24183

Multi-chaperone function modulation and association with cytoskeletal proteins are key features of the function of AIP in the pituitary gland
Cited by: 26
Author(s): Laura C. Hernández-Ramírez, Rhodri M. L. Morgan, Sayka Barry, Fulvio D’Acquisto, Chrisostomos Prodromou, Márta Korbonits
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.23951

Integrated analysis of fine-needle-aspiration cystic fluid proteome, cancer cell secretome, and public transcriptome datasets for papillary thyroid cancer biomarker discovery
Cited by: 18
Author(s): Chia‐Chun Wu, Jen‐Der Lin, Jeng-Ting Chen, Ching S. Chang, Hsiao‐Fen Weng, Chuen Hsueh, Hui‐Ping Chien, Jau‐Song Yu
Software Mentions: 1
Published: almost 8 years ago

10.18632/oncotarget.24773

Proteomic alterations in early stage cervical cancer
Cited by: 18
Author(s): Coşkun Güzel, Natalia Govorukhina, G. Bea A. Wisman, Christoph Stingl, Lennard J. M. Dekker, Harry G. Klip, Harry Hollema, Victor Guryev, Péter Horvatovich, Ate G.J. van der Zee, Rainer Bischoff, Theo M. Luider
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.25400

Cancer-related transcription regulator protein NAC1 forms a protein complex with CARM1 for ovarian cancer progression
Cited by: 13
Author(s): Naomi Nakayama, Gyosuke Sakashita, Yoshiki Nariai, Hiroaki Kato, Kaori Sinmyozu, Jun‐ichi Nakayama, Satoru Kyo, Takeshi Urano, Kentaro Nakayama
Software Mentions: 1
Published: over 7 years ago

10.18632/oncotarget.26063

Comparative proteomic analysis of cat eye syndrome critical region protein 1- function in tumor-associated macrophages and immune response regulation of glial tumors
Cited by: 6
Author(s): Changbin Zhu, Dana A. M. Mustafa, Merle M. Krebber, Ihsan Chrifi, Pieter J. M. Leenen, Dirk J. Duncker, Lennard J. M. Dekker, Theo M. Luider, Johan M. Kros, Caroline Cheng
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.26182

Exosomal survivin facilitates vesicle internalization
Cited by: 14
Author(s): Amber Gonda, Janviere Kabagwira, Girish N. Senthil, Heather R. Ferguson Bennit, Jonathan W. Neidigh, Sharmin Khan, Nathan R. Wall
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.26339

Correction: Proteomic screening identifies the zonula occludens protein ZO-1 as a new partner for ADAM12 in invadopodia-like structures
Cited by: 1
Author(s): Bassil Dekky, Michael W. Ruff, Dominique Bonnier, Vincent Legagneux, Nathalie Théret
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.26251

Drug-induced aneuploidy and polyploidy is a mechanism of disease relapse in MYC/BCL2-addicted diffuse large B-cell lymphoma
Cited by: 23
Author(s): Sameer Islam, Andrew L. Paek, Michael F. Hammer, Savithri Rangarajan, Robert Ruijtenbeek, Laurence Cooke, Eric Weterings, Daruka Mahadevan
Software Mentions: 1
Published: about 7 years ago

10.18632/oncotarget.26984

Functional interplay between YY1 and CARM1 promotes oral carcinogenesis
Cited by: 27
Author(s): Amit Behera, Manoj Kumar, Muthu K. Shanmugam, Aditya Bhattacharya, Vinay J. Rao, Akshay Bhat, Madavan Vasudevan, K. S. Gopinath, Azeem Mohiyuddin, Anupam Chatterjee, Gautam Sethi, Tapas K. Kundu
Software Mentions: 1
Published: over 6 years ago

10.18632/oncotarget.27192

GSTΠ stimulates caveolin-1-regulated polyamine uptake via actin remodeling
Cited by: 8
Author(s): Takeshi Uemura, George Tsaprailis, Eugene W. Gerner
Software Mentions: 1
Published: about 6 years ago

10.18632/oncotarget.27185

Malignant ascites: a source of therapeutic protein against ovarian cancer?
Cited by: 3
Author(s): Pascale Ribaux, Aurore Britan, Gabriele Thumann, Florence Delié, Patrick Petignat, Marie Cohen
Software Mentions: 1
Published: about 6 years ago

10.1016/j.jprot.2017.06.016

Increasing the accuracy of proteomic typing by decellularisation of amyloid tissue biopsies
Cited by: 14
Author(s): Palma Mangione, Giuseppe Mazza, Janet A. Gilbertson, Nigel B. Rendell, Diana Canetti, Sofia Giorgetti, Luca Frenguelli, Marco Curti, Tamer Rezk, Sara Raimondi, Mark B. Pepys, Philip N. Hawkins, Julian D. Gillmore, Graham W. Taylor, Massimo Pinzani, Vittorio Bellotti
Software Mentions: 1
Published: over 8 years ago

10.4172/jpb.1000214

High Fat Diet-Induced Changes in Hepatic Protein Abundance in Mice
Cited by: 14
Author(s): Moulun Luo, April Mengos, Tianna M. Stubblefield, Lawrence J. Mandarino
Software Mentions: 1
Published: almost 14 years ago

10.4172/jpb.1000317

Proteomics-Based Identification of Differentially Abundant Proteins from Human Keratinocytes Exposed to Arsenic Trioxide
Cited by: 19
Author(s): Udensi K. Udensi, Alan J. Tackett, Stephanie D. Byrum, Nathan L. Avaritt, Deepanwita Sengupta, Linley W Moreland, Paul B. Tchounwou, Raphael D. Isokpehi
Software Mentions: 1
Published: almost 12 years ago

10.4172/jpb.1000363

Novel Use of Proteomic Profiles in a Convex-Hull Ensemble Classifier to Predict Gynecological Cancer Patients? Susceptibility to Gastrointestinal Mucositis as Side Effect of Radiation Therapy
Cited by: 4
Author(s): Ralph L. Kodell, Randy S. Haun, Eric Siegel, Chuanlei Zhang, Angela B Trammel, Martin Hauer‐Jensen, Alexander Burnett
Software Mentions: 1
Published: almost 11 years ago

10.4172/2161-105X.1000241

Proteomic Profiling of Early Chronic Pulmonary Hypertension: Evidence for Both Adaptive and Maladaptive Pathology
Cited by: 5
Author(s): Abdulhameed Aziz, Anson M. Lee, Nneka N. Ufere, Ralph J. Damiano, R. Reid Townsend, Marc R. Moon
Software Mentions: 1
Published: almost 11 years ago

10.1098/rsob.150025

The external PASTA domain of the essential serine/threonine protein kinase PknB regulates mycobacterial growth
Cited by: 22
Author(s): Obolbek Turapov, Jessica Loraine, Christopher Jenkins, Philippe Barthe, Daniel McFeely, Francesca Forti, Daniela Ghisotti, Dušan Hesek, Mijoon Lee, Andrew R. Bottrill, Waldemar Vollmer, Shahriar Mobashery, Martin Cohen‐Gonsaud, Galina V. Mukamolova
Software Mentions: 1
Published: over 10 years ago

10.1098/rsob.150210

Post-translational processing targets functionally diverse proteins in Mycoplasma hyopneumoniae
Cited by: 48
Author(s): Jessica L. Tacchi, Benjamin B. A. Raymond, Paul A. Haynes, Iain J. Berry, Michael Widjaja, Daniel R. Bogema, Lauren K. Woolley, Cheryl Jenkins, F. Chris Minion, Matthew P. Padula, Steven P. Djordjevic
Software Mentions: 1
Published: almost 10 years ago

10.2174/1874364101711010107

Moxifloxacin Concentration and Proteomic Analysis of Aqueous Humor in Human Uveitis Associated with Oral Moxifloxacin Therapy
Cited by: 5
Author(s): David M. Hinkle, Nicole A. Kruh-Garcia, Jonathan N. Kruh, Carolyn J. Broccardo, Priyanka Doctor, C. Stephen Foster
Software Mentions: 1
Published: over 8 years ago

10.1111/jvim.16070

Light chain myeloma and detection of free light chains in serum and urine of dogs and cats
Cited by: 12
Author(s): R. Adam Harris, Matthew Miller, Dillon Donaghy, Laura V. Ashton, Catherine E. Langston, Todd Shockey, A Russell Moore
Software Mentions: 1
Published: almost 5 years ago

10.1128/JVI.02049-20

Proximity Biotin Labeling Reveals Kaposi’s Sarcoma-Associated Herpesvirus Interferon Regulatory Factor Networks
Cited by: 7
Author(s): Ashish Kumar, Michelle Salemi, Resham Bhullar, Sara Guevara-Plunkett, Yuanzhi Lyu, Kang Hsin Wang, Chie Izumiya, Mel Campbell, Ken Nakajima, Yoshihiro Izumiya
Software Mentions: 1
Published: over 4 years ago

10.1128/JVI.00984-14

Host Factors That Interact with the Pestivirus N-Terminal Protease, N pro , Are Components of the Ribonucleoprotein Complex
Cited by: 21
Author(s): Matthew Jefferson, Andras Donaszi-Ivanov, Sean Pollen, Tamás Dalmay, Gerhard Saalbach, Penny P. Powell
Software Mentions: 1
Published: about 11 years ago

10.1128/JVI.01574-18

Acute Infection and Subsequent Subclinical Reactivation of Herpes Simplex Virus 2 after Vaginal Inoculation of Rhesus Macaques
Cited by: 10
Author(s): Ming Chu Lo, Jia Zhu, Scott G. Hansen, Timothy D. Carroll, Christina Farr Zuend, Laura Noël‐Romas, Min Zhong, Linda Fritts, Meei Li Huang, Sijie Sun, Ying Huang, David M. Koelle, Louis J. Picker, Adam Burgener, Lawrence Corey, Christopher J. Miller
Software Mentions: 1
Published: almost 7 years ago

10.1128/JVI.01492-16

Identification of Essential Genes in the Salmonella Phage SPN3US Reveals Novel Insights into Giant Phage Head Structure and Assembly
Cited by: 28
Author(s): Julie A. Thomas, Andrea Denisse Benítez Quintana, Martine A. Bosch, Adriana Coll De Peña, Elizabeth Aguilera, Assitan Coulibaly, Weimin Wu, Michael V. Osier, André O. Hudson, Susan T. Weintraub, Lindsay W. Black
Software Mentions: 1
Published: about 9 years ago

10.1186/1479-5876-9-188

Correspondence between salivary proteomic pattern and clinical course in primary Sjögren syndrome and non-Hodgkin's lymphoma: a case report
Cited by: 22
Author(s): Chiara Baldini, Laura Giusti, Federica Ciregia, Ylenia Da Valle, Camillo Giacomelli, Elena Donadio, Francesco Ferro, Sara Galimberti, Valentina Donati, Laura Bazzichi, Stefano Bombardieri, Antonio Lucacchini
Software Mentions: 1
Published: about 14 years ago

10.1186/1479-5876-11-243

A multidisciplinary approach to study a couple of monozygotic twins discordant for the chronic fatigue syndrome: a focus on potential salivary biomarkers
Cited by: 31
Author(s): Federica Ciregia, Laura Giusti, Ylenia Da Valle, Elena Donadio, Arianna Consensi, Camillo Giacomelli, Francesca Sernissi, P. Scarpellini, Fabrizio Maggi, Antonio Lucacchini, Laura Bazzichi
Software Mentions: 1
Published: about 12 years ago

10.1186/s12967-015-0712-9

Differential urinary glycoproteome analysis of type 2 diabetic nephropathy using 2D-LC–MS/MS and iTRAQ quantification
Cited by: 27
Author(s): Zhengguang Guo, Xuejiao Liu, Menglin Li, Chen Shao, Tao Jiang, Wei Sun, Mingxi Li
Software Mentions: 1
Published: about 10 years ago

10.1155/2017/8398072

The Effects of Blast Exposure on Protein Deimination in the Brain
Cited by: 12
Author(s): Peter J. Attilio, Michael Flora, Alaa Kamnaksh, Donald J. Bradshaw, Denes V. Agoston, Gregory P. Mueller
Software Mentions: 1
Published: almost 9 years ago

10.1523/ENEURO.0144-18.2018

Transducin β-Subunit Can Interact with Multiple G-Protein γ-Subunits to Enable Light Detection by Rod Photoreceptors
Cited by: 7
Author(s): Paige M. Dexter, Ekaterina S. Lobanova, Stella Finkelstein, William J. Spencer, Nikolai P. Skiba, Vadim Y. Arshavsky
Software Mentions: 1
Published: over 7 years ago

10.1186/s12986-019-0418-8

CoQ10 enhances PGC1α and increases expression of mitochondrial antioxidant proteins in chronically ischemic swine myocardium
Cited by: 7
Author(s): Laura Hocum Stone, Erin Chappuis, Christin Wright, Rosemary F. Kelly, Edward O. McFalls
Software Mentions: 1
Published: about 6 years ago

10.3390/nu12113404

Effects of High-Fat Diet Induced Obesity and Fructooligosaccharide Supplementation on Cardiac Protein Expression
Cited by: 2
Author(s): Sidra Sarfaraz, Shamjeet Singh, Aileen Hawke, Sandra Clarke, D. Dan Ramdath
Software Mentions: 1
Published: about 5 years ago

10.3390/nu9121341

A Novel Prebiotic Blend Product Prevents Irritable Bowel Syndrome in Mice by Improving Gut Microbiota and Modulating Immune Response
Cited by: 53
Author(s): Qian Chen, Yiping Ren, Jing Lü, Mark Bartlett, Lei Chen, Yan Zhang, Xiaokui Guo, Chang Liu
Software Mentions: 1
Published: almost 8 years ago

10.3934/medsci.2017.1.17

MTA3 Regulates Extravillous Trophoblast Invasion Through NuRD Complex
Cited by: 1
Author(s): Ying Chen, Sok Kean Khoo, Richard E. Leach, Kai Wang
Software Mentions: 1
Published: almost 9 years ago

10.3390/nu12030749

Comparison of Omega-3 Eicosapentaenoic Acid Versus Docosahexaenoic Acid-Rich Fish Oil Supplementation on Plasma Lipids and Lipoproteins in Normolipidemic Adults
Cited by: 22
Author(s): Yang Zhihong, Marcelo Amar, Maureen Sampson, Amber B. Courville, Alexander V. Sorokin, Scott M. Gordon, Angel Aponte, Michael Stagliano, Martin P. Playford, Yi-Ping Fu, Shanna Yang, Nehal N. Mehta, Alan T. Remaley
Software Mentions: 1
Published: over 5 years ago

10.3934/microbiol.2017.4.885

Identification of temperature regulated factors of Campylobacter jejuni and their potential roles in virulence
Cited by: 5
Author(s): Yue Tang, Shaun Cawthraw, Mary C. Bagnall, Adriana J Gielbert, Martin J. Woodward, Liljana Petrovska
Software Mentions: 1
Published: almost 9 years ago

10.1186/s13568-016-0276-y

Myceliophthora thermophila M77 utilizes hydrolytic and oxidative mechanisms to deconstruct biomass
Cited by: 21
Author(s): Hï¿1⁄2vila Brognaro dos Santos, Thaís Milena de Souza Bezerra, J. G. C. Pradella, P. S. Delabona, Deise Juliana da Silva Lima, Eleni Gomes, Steve Hartson, Janet Rogers, Brian Couger, Rolf A. Prade
Software Mentions: 1
Published: about 9 years ago

10.1186/s13568-020-00969-w

A novel and more efficient biosynthesis approach for human insulin production in Escherichia coli (E. coli)
Cited by: 15
Author(s): Kamini Govender, Tricia Naicker, Johnson Lin, Sooraj Baijnath, Anil A. Chuturgoon, Naeem Sheik Abdul, Taskeen Docrat, Hendrik G. Kruger, Thavendran Govender
Software Mentions: 1
Published: over 5 years ago

10.1042/AN20130027

Identification of Bax-Interacting Proteins in Oligodendrocyte Progenitors during Glutamate Excitotoxicity and Perinatal Hypoxia–Ischemia
Cited by: 26
Author(s): Sopio Simonishvili, Mohit Raja Jain, Hong Li, Steven W. Levison, Teresa L. Wood
Software Mentions: 1
Published: about 12 years ago

10.1186/s40478-020-00911-y

Diversity in Aβ deposit morphology and secondary proteome insolubility across models of Alzheimer-type amyloidosis
Cited by: 9
Author(s): Guilian Xu, Susan Fromholt, Paramita Chakrabarty, Fanchao Zhu, Xuefei Liu, Michael C. Pace, Jin Koh, Todd E. Golde, Yona Levites, Jada Lewis, David R. Borchelt
Software Mentions: 1
Published: over 5 years ago

10.1186/s40478-019-0660-3

The APMAP interactome reveals new modulators of APP processing and beta-amyloid production that are altered in Alzheimer’s disease
Cited by: 20
Author(s): Hermeto Gerber, Sébastien Mosser, Benjamin Boury-Jamot, Michael Stumpe, Alessandra Piersigilli, Christine Goepfert, Jörn Dengjel, Urs Albrecht, Fulvio Magara, Patrick C. Fraering
Software Mentions: 1
Published: almost 7 years ago

10.18632/aging.102441

Molecular basis of senescence transmitting in the population of human endometrial stromal cells
Cited by: 14
Author(s): Anastasiia Griukova, Pavel Deryabin, A. N. Shatrova, Elena Burova, Valeria Severino, Annarita Farina, Nikolay Nikolsky, Aleksandra Borodkina
Software Mentions: 1
Published: about 6 years ago

10.1111/acel.12324

Modifications in stromal extracellular matrix of aged corneas can be induced by ultraviolet A irradiation
Cited by: 19
Author(s): Sébastien P. Gendron, Patrick J. Rochette
Software Mentions: 1
Published: almost 11 years ago

10.1111/acel.13355

Peptide location fingerprinting reveals modification‐associated biomarker candidates of ageing in human tissue proteomes
Cited by: 6
Author(s): Matiss Ozols, Alexander Eckersley, Kieran T. Mellody, Venkatesh Mallikarjun, Stacey Warwood, Ronan O’Cualain, David Knight, Rod B. Watson, Christopher E.M. Griffiths, Joe Swift, Michael J. Sherratt
Software Mentions: 1
Published: over 4 years ago

10.1111/acel.12330

Aging‐related anatomical and biochemical changes in lymphatic collectors impair lymph transport, fluid homeostasis, and pathogen clearance
Cited by: 98
Author(s): Valerio Zolla, Irina Tsoy Nizamutdinova, Brian Scharf, Cristina C. Clement, Daisuke Maejima, Tony J. Akl, Takashi Nagai, Paola Luciani, Jean‐Christophe Leroux, Cornelia Halin, Sabriya Stukes, Sangeeta Tiwari, Arturo Casadevall, William R. Jacobs, David Entenberg, David C. Zawieja, John S. Condeelis, David R. Fooksman, Anatoliy A. Gashev, Laura Santambrogio
Software Mentions: 1
Published: over 10 years ago

10.14336/AD.2020.0908

Proteomic Profiling of Extracellular Vesicles Separated from Plasma of Former National Football League Players at Risk for Chronic Traumatic Encephalopathy
Cited by: 10
Author(s): Satoshi Muraoka, Annina M. DeLeo, Zijian Yang, Harutsugu Tatebe, Kayo Takamatsu-Yukawa, Seiko Ikezu, Takahiko Tokuda, David Issadore, Robert Stern, Tsuneya Ikezu
Software Mentions: 1
Published: almost 5 years ago

10.1007/s00216-012-5767-3

De novo subtype and strain identification of botulinum neurotoxin type B through toxin proteomics
Cited by: 48
Author(s): Suzanne R. Kalb, Jakub Baudys, Jon C. Rees, Theresa J. Smith, Leonard A. Smith, Charles H. Helma, Karen K. Hill, Skadi Kull, Sebastian Kirchner, Martin B. Dorner, Brigitte G. Dorner, James L. Pirkle, John R. Barr
Software Mentions: 1
Published: almost 14 years ago

10.1016/j.ab.2011.05.005

Mapping protein interactions by combining antibody affinity maturation and mass spectrometry
Cited by: 22
Author(s): Michael R. Dyson, Yong Zheng, Cunjie Zhang, Karen Colwill, Kritika Pershad, Brian K. Kay, Tony Pawson, John McCafferty
Software Mentions: 1
Published: about 14 years ago

10.1590/1984-3143-AR2020-0552

Uterine infusion of conceptus fragments changes the protein profile from cyclic mares
Cited by: 0
Author(s): Cesar Augusto Camacho, Gabriel de Oliveira Santos, Jorge Emilio Caballeros, N. Cazales, Camilo José Ramirez, Pedro Marcus Pereira Vidigal, Humberto Josué de Oliveira Ramos, Edvaldo Barros, Rodrigo Costa Mattos
Software Mentions: 1
Published: almost 6 years ago

10.3390/ani11071942

Insect Protein-Based Diet as Potential Risk of Allergy in Dogs
Cited by: 16
Author(s): Blanka Premrov Bajuk, Petra Zrimšek, Tina Kotnik, Adrijana Leonardi, Igor Križaj, Breda Jakovac-Strajn
Software Mentions: 1
Published: over 4 years ago

10.3390/ani11051338

Early Heat Exposure Effects on Proteomic Changes of the Broiler Liver under Acute Heat Stress
Cited by: 1
Author(s): Darae Kang, Kwan Seob Shim
Software Mentions: 1
Published: over 4 years ago

10.3390/antiox9090862

NHERF1 Loss Upregulates Enzymes of the Pentose Phosphate Pathway in Kidney Cortex
Cited by: 3
Author(s): Adrienne M. Bushau-Sprinkle, Michelle T. Barati, Kenneth B. Gagnon, Syed J. Khundmiri, Kathleen Kitterman, Bradford G. Hill, Amanda R. Sherwood, Michael L. Merchant, N. Shesh, Sudhir Srivastava, Barbara J. Clark, Leah J. Siskind, Michael E. Brier, Jessica Hata, Eleanor Lederer
Software Mentions: 1
Published: about 5 years ago

10.3390/antiox10081298

A Novel Immunoassay for Malondialdehyde-Conjugated Low-Density Lipoprotein Measures Dynamic Changes in the Blood of Patients Undergoing Coronary Artery Bypass Graft Surgery
Cited by: 2
Author(s): Samata S. Pandey, Adam Hartley, Mikhail Caga-Anan, Tareq Ammari, Ameer Khan, Bao Nguyen, Chiari Kojima, Jon R. Anderson, Steven Lynham, Michael Johns, Dorian O. Haskard, Ramzi Khamis
Software Mentions: 1
Published: over 4 years ago

10.3390/antiox8100488

Effect of Antioxidant Supplementation on the Sperm Proteome of Idiopathic Infertile Men
Cited by: 19
Author(s): Ashok Agarwal, Manesh Kumar Panner Selvam, Luna Samanta, Sarah C. Vij, Neel Parekh, Edmund Sabanegh, Nicholas N. Tadros, Mohamed Arafa, Rakesh Sharma
Software Mentions: 1
Published: about 6 years ago

10.1007/s10495-018-1505-4

Cornification of nail keratinocytes requires autophagy for bulk degradation of intracellular proteins while sparing components of the cytoskeleton
Cited by: 18
Author(s): Karin Jaeger, Supawadee Sukseree, Shaomin Zhong, Brett S. Phinney, Veronika Mlitz, Maria Buchberger, Marie-Sophie Narzt, Флориан Грубер, Erwin Tschachler, Robert H. Rice, Leopold Eckhart
Software Mentions: 1
Published: almost 7 years ago

10.1128/AEM.01968-15

Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli
Cited by: 47
Author(s): Brant R. Johnson, Jeffrey P. Hymes, Rosemary Sanozky-Dawes, Emily DeCrescenzo Henriksen, Rodolphe Barrangou, Todd R. Klaenhammer
Software Mentions: 1
Published: almost 10 years ago

10.1007/s00253-015-6778-8

Versatile vector suite for the extracytoplasmic production and purification of heterologous His-tagged proteins in Lactococcus lactis
Cited by: 13
Author(s): Jolanda Neef, Fin J. Milder, Dennis G. A. M. Koedijk, Marindy Klaassens, Erik Heezius, Jos A. G. van Strijp, Andreas Otto, Dörte Becher, Jan Maarten van Dijl, Girbe Buist
Software Mentions: 1
Published: over 10 years ago

10.1007/s00253-018-9073-7

Characterization of the caprolactam degradation pathway in Pseudomonas jessenii using mass spectrometry-based proteomics
Cited by: 23
Author(s): Marleen Otzen, Cyntia M. Palacio, Dick B. Janssen
Software Mentions: 1
Published: over 7 years ago

10.1161/ATVBAHA.118.312175

Glycoproteomic Analysis of the Aortic Extracellular Matrix in Marfan Patients
Cited by: 34
Author(s): Xiaoke Yin, Shaynah Wanga, Adam Fellows, Javier Barallobre-Barreiro, Ruifang Lu, Hongorzul Davaapil, Romy Franken, Marika Fava, Ferheen Baig, Philipp Skroblin, Qiuru Xing, David R. Koolbergen, Maarten Groenink, Aeilko H. Zwinderman, Ron Balm, Carlie J.M. de Vries, Barbara J.M. Mulder, Rosa Viner, Marjan Jahangiri, Dieter P. Reinhardt, Sanjay Sinha, Vivian de Waard, Manuel Mayr
Software Mentions: 1
Published: over 6 years ago

10.1186/ar3523

Proteomic analysis of saliva: a unique tool to distinguish primary Sjögren's syndrome from secondary Sjögren's syndrome and other sicca syndromes
Cited by: 97
Author(s): Chiara Baldini, Laura Giusti, Federica Ciregia, Ylenia Da Valle, Camillo Giacomelli, Elena Donadio, Francesca Sernissi, Laura Bazzichi, Gino Giannaccini, Stefano Bombardieri, Antonio Lucacchini
Software Mentions: 1
Published: almost 15 years ago

10.1186/ar3802

Autoantibodies to transcription intermediary factor (TIF)1β associated with dermatomyositis
Cited by: 23
Author(s): Minoru Satoh, Jason Y F Chan, Steven J. Ross, Yang Li, Yoshioki Yamasaki, Hisakata Yamada, Mónica Vázquez-Del Mercado, Marcelo H. Petri, Luis J. Jara, Miguel Ángel Saavedra, Claudia Cruz‐Reyes, Eric S. Sobel, Westley H. Reeves, Angela Ceribelli, Edward K. L. Chan
Software Mentions: 1
Published: almost 14 years ago

10.1186/s13075-017-1228-x

Identification of potential saliva and tear biomarkers in primary Sjögren’s syndrome, utilising the extraction of extracellular vesicles and proteomics analysis
Cited by: 149
Author(s): Lara A. Aqrawi, Hilde Kanli Galtung, Beate Vestad, Reidun Øvstebø, Bernd Thiede, Shermin Rusthen, Allan Young, Eduarda Guerreiro, Tor Paaske Utheim, Xiangjun Chen, Øygunn Aass Utheim, Øyvind Palm, Janicke Liaaen Jensen
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2091-13-17

The role of molecular chaperonins in warm ischemia and reperfusion injury in the steatotic liver: A proteomic study
Cited by: 7
Author(s): Venkataswarup Tiriveedhi, Kendra D. Conzen, Jane Liaw-Conlin, Gundumi A. Upadhya, James P. Malone, R. Reid Townsend, Robnet T. Kerns, Jianluo Jia, Krista Csontos, S. Ramachandran, T. Mohanakumar, Christopher Anderson, William C. Chapman
Software Mentions: 1
Published: almost 14 years ago

10.1186/s12859-021-04237-x

On how to generalize species-specific conceptual schemes to generate a species-independent Conceptual Schema of the Genome
Cited by: 3
Author(s): Alberto García S., Juan Carlos Casamayor
Software Mentions: 1
Published: over 4 years ago

10.1186/1741-7007-10-5

Involvement of Plasmodium falciparum protein kinase CK2 in the chromatin assembly pathway
Cited by: 31
Author(s): Eeshita G Dastidar, Guillem Dayer, Zoe M Holland, Dominique Dorin‐Semblat, Aurélie Claës, Arnaud Chêne, Amit Sharma, Romain Hamelin, Marc Moniatte, José-Juan Lopez-Rubio, Artur Scherf, Christian Doerig
Software Mentions: 1
Published: almost 14 years ago

10.1186/1472-6750-10-62

Engineering of N. benthamiana L. plants for production of N-acetylgalactosamine-glycosylated proteins - towards development of a plant-based platform for production of protein therapeutics with mucin type O-glycosylation
Cited by: 44
Author(s): Sasha M. Daskalova, Josiah E. Radder, Zbigniew A. Cichacz, Sam H Olsen, George Tsaprailis, Hugh S. Mason, Linda C. Lopez
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12885-016-2331-0

Expression of the cereblon binding protein argonaute 2 plays an important role for multiple myeloma cell growth and survival
Cited by: 33
Author(s): Qinqin Xu, Yue Xian Hou, Paul Langlais, Patrick Erickson, James Zhu, Chao Shi, Moulun Luo, Yuanxiao Zhu, Ye Xu, Lawrence J. Mandarino, Keith Stewart, Xiu Bao Chang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12885-016-2211-7

Mitogen-activated protein kinase signaling causes malignant melanoma cells to differentially alter extracellular matrix biosynthesis to promote cell survival
Cited by: 13
Author(s): Anna Afasizheva, Alexus Devine, Heather Tillman, King Leung Fung, Wilfred D. Vieira, Benjamin H. Blehm, Yorihisa Kotobuki, Ben Busby, Emily I. Chen, Kandice Tanner
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12885-020-07111-w

Proteomics reveals a therapeutic vulnerability via the combined blockade of APE1 and autophagy in lung cancer A549 cells
Cited by: 11
Author(s): Shuting Pan, Jianguo Zhou, Fang Yang, Shu‐Feng Zhou, Tao Ren
Software Mentions: 1
Published: over 5 years ago

10.1186/s12885-015-1473-9

Quantitative proteomic analysis shows differentially expressed HSPB1 in glioblastoma as a discriminating short from long survival factor and NOVA1 as a differentiation factor between low-grade astrocytoma and oligodendroglioma
Cited by: 36
Author(s): Marcela Gimenez, Suely Kazue Nagahashi Marie, Sueli Mieko Oba-Shinjo, Miyuki Uno, Clarice Izumi, João Bosco Oliveira, José César Rosa
Software Mentions: 1
Published: over 10 years ago

10.1186/1471-2121-14-6

GxcC connects Rap and Rac signaling during Dictyostelium development
Cited by: 13
Author(s): Katarzyna Plak, Douwe M. Veltman, Fabrizia Fusetti, Jetze Beeksma, Fernando Rivero, Peter J.M. van Haastert, Arjan Kortholt
Software Mentions: 1
Published: almost 13 years ago

10.1186/1472-6882-12-S1-P22

P01.22. Identification of a peptide biomarker from bromelain, an extract of ananas comosus merr, using LC-SRM/MS
Cited by: 0
Author(s): Eric R. Secor, Steven M. Szczepanek, Linda Guernsey, Lawrence K. Silbart, Roger S. Thrall, Dong Qi Han
Software Mentions: 1
Published: over 13 years ago

10.1186/s12862-017-0978-z

The skeletal proteome of the sea star Patiria miniata and evolution of biomineralization in echinoderms
Cited by: 19
Author(s): Rachel L. Flores, Brian T. Livingston
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2148-9-243

The genome sequence of the protostome Daphnia pulex encodes respective orthologues of a neurotrophin, a Trk and a p75NTR: Evolution of neurotrophin signaling components and related proteins in the bilateria
Cited by: 19
Author(s): Karen Wilson
Software Mentions: 1
Published: almost 17 years ago

10.1186/s12862-017-0927-x

Duplication and concerted evolution of MiSp-encoding genes underlie the material properties of minor ampullate silks of cobweb weaving spiders
Cited by: 30
Author(s): Jannelle Vienneau-Hathaway, Elizabeth R. Brassfield, A. Kelly Lane, Matthew A. Collin, Sandra M. Correa-Garhwal, Thomas H. Clarke, Evelyn E. Schwager, Jessica E. Garb, Cheryl Y. Hayashi, Nadia A. Ayoub
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-230X-13-64

Comparative proteomics study on liver mitochondria of primary biliary cirrhosis mouse model
Cited by: 5
Author(s): Guang Song, Chao Hu, Huishan Zhu, Xi Li, Liying Zhao, Renwu Zhou, Xuan Zhang, Fengchun Zhang, Lin Wu, Yongzhe Li
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-017-3853-9

Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction
Cited by: 11
Author(s): Flavia Bossi, Jue Fan, Jun Xiao, Lilyana Chandra, Max W. Shen, Yanniv Dorone, Doris Wagner, Seung Y. Rhee
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-10-208

Genome-wide identification and characterization of cytochrome P450 monooxygenase genes in the ciliate Tetrahymena thermophila
Cited by: 31
Author(s): Chengjie Fu, Jie Xiong, Wei Miao
Software Mentions: 1
Published: over 16 years ago

10.1186/1471-2164-11-644

From an electrophoretic mobility shift assay to isolated transcription factors: a fast genomic-proteomic approach
Cited by: 17
Author(s): Astrid R. Mach-Aigner, Karin Grosstessner-Hain, Márcio José Poças-Fonseca, Karl Mechtler, Robert L. Mach
Software Mentions: 1
Published: about 15 years ago

10.1186/s12864-017-3655-0

Core-genome scaffold comparison reveals the prevalence that inversion events are associated with pairs of inverted repeats
Cited by: 8
Author(s): Dan Wang, Shuai Cheng Li, Fei Guo, Kang Ning, Lusheng Wang
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-017-3637-2

Positional bias in variant calls against draft reference assemblies
Cited by: 8
Author(s): Roman Briskine, Kentaro Shimizu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12864-019-5890-z

Differentially expressed mRNAs, proteins and miRNAs associated to energy metabolism in skeletal muscle of beef cattle identified for low and high residual feed intake
Cited by: 21
Author(s): Elisa B. Carvalho, Mateus Pies Gionbelli, Rafael Torres de Souza Rodrigues, Sarah Figueiredo Martins Bonilha, C. J. Newbold, Simone Eliza Facioni Guimarães, Walmir Silva, Lucas Lima Verardo, Fabyano F. Silva, Edênio Detmann, Márcio de Souza Duarte
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2164-15-280

Proteomic comparison of Ralstonia solanacearum strains reveals temperature dependent virulence factors
Cited by: 28
Author(s): Ana Maria Bocsanczy, U. Achenbach, Arianna Mangravita-Novo, Marjorie Chow, David J. Norman
Software Mentions: 1
Published: over 11 years ago

10.1186/s12864-017-4403-1

Insights into teleost sex determination from the Seriola dorsalis genome assembly
Cited by: 36
Author(s): Catherine Purcell, Arun S. Seetharam, Owyn E. Snodgrass, Sofía Ortega‐García, John R. Hyde, Andrew J. Severin
Software Mentions: 1
Published: almost 8 years ago

10.1186/1471-2164-13-614

Anopheles salivary gland proteomes from major malaria vectors
Cited by: 23
Author(s): Albin Fontaine, Thierry Fusaı̈, Sébastien Briolant, Sylvain Buffet, Claude Villard, Emilie Baudelet, Matthieu Pophillat, Samuel Granjeaud, Christophe Rogier, Lionel Almeras
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2164-14-764

The broccoli (Brassica oleracea) phloem tissue proteome
Cited by: 19
Author(s): James A. Anstead, Steven D. Hartson, Gary A. Thompson
Software Mentions: 1
Published: almost 13 years ago

10.1186/s12864-020-07299-y

Shotgun proteomics of peach fruit reveals major metabolic pathways associated to ripening
Cited by: 12
Author(s): Ricardo Nilo-Poyanco, Carol Moraga, Gianfranco Benedetto, Ariel Orellana, Aparecida Marques de Almeida
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12864-016-3048-9

High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders
Cited by: 24
Author(s): Felipe J. Fuzita, Martijn W. H. Pinkse, José Salvatori Patané, Peter Verhaert, Adriana Rios Lopes
Software Mentions: 1
Published: over 9 years ago

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