pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1155/2019/4165735

Quantitative Proteomic Analyses of a Pathogenic Strain and Its Highly Passaged Attenuated Strain ofMycoplasma hyopneumoniae
Cited by: 5
Author(s): Sha Li, Liurong Fang, Wei Liu, Tao Song, Fuwei Zhao, Ruoxi Zhang, Dan Wang, Shaobo Xiao
Software Mentions: 1
Published: over 5 years ago

10.1155/2015/208017

Secretome Identifies Tenascin-X as a Potent Marker of Ovarian Cancer
Cited by: 10
Author(s): M. Kramer, Sandra Pierredon, Pascale Ribaux, Jean-Christophe Tille, Patrick Petignat, Marie Cohen
Software Mentions: 1
Published: almost 10 years ago

10.1155/2017/7508316

Proteomic Analysis of Liver Proteins in a Rat Model of Chronic Restraint Stress-Induced Depression
Cited by: 8
Author(s): Cong Liu, Zhengguang Guo, Ronghua Zhao, Wei Sun, Ming Xie
Software Mentions: 1
Published: almost 8 years ago

10.1155/2014/810562

Age and SPARC Change the Extracellular Matrix Composition of the Left Ventricle
Cited by: 36
Author(s): Lisandra E. de Castro Brás, Hiroe Toba, Catalin F. Baicu, Michael R. Zile, Susan T. Weintraub, Merry L. Lindsey, Amy D. Bradshaw
Software Mentions: 1
Published: almost 11 years ago

10.3390/biomedicines9010008

Similarities and Differences in Extracellular Vesicle Profiles between Ischaemic Stroke and Myocardial Infarction
Cited by: 13
Author(s): Laura Otero-Ortega, Elisa Alonso-López, María Pérez‐Mato, Fernando Laso-García, Mari Carmen Gómez-de Frutos, Luke Diekhorst, Marı́a Laura Garcı́a-Bermejo, Elisa Conde-Moreno, Blanca Fuentes, María Alonso de Leciñana, Eduardo Armada, Lorena Buiza-Palomino, Exuperio Díez–Tejedor, María Gutiérrez-Fernández
Software Mentions: 1
Published: almost 4 years ago

10.3390/biomedicines9070786

Circulating Extracellular Vesicle Proteins and MicroRNA Profiles in Subcortical and Cortical-Subcortical Ischaemic Stroke
Cited by: 14
Author(s): Laura Otero-Ortega, Elisa Alonso-López, María Pérez‐Mato, Fernando Laso-García, Mari Carmen Gómez-de Frutos, Luke Diekhorst, Marı́a Laura Garcı́a-Bermejo, Elisa Conde-Moreno, Blanca Fuentes, María Alonso de Leciñana, Susana B. Bravo, Exuperio Díez–Tejedor, María Gutiérrez-Fernández
Software Mentions: 1
Published: over 3 years ago

10.3390/biom9090504

Integrative Analysis of the Core Fruit Lignification Toolbox in Pear Reveals Targets for Fruit Quality Bioengineering
Cited by: 14
Author(s): Yunpeng Cao, Xiaoxu Li, Lan Jiang
Software Mentions: 1
Published: about 5 years ago

10.3390/biom3020270

Overcoming Challenges and Opening New Opportunities in Glycoproteomics
Cited by: 5
Author(s): Ten‐Yang Yen, Sucharita Dutta, Christina Litsakos-Cheung, Alejandro A. Corona, Leslie C. Timpe, Bruce A. Macher
Software Mentions: 1
Published: over 11 years ago

10.3390/biom10081126

Structure-Antifouling Activity Relationship and Molecular Targets of Bio-Inspired(thio)xanthones
Cited by: 20
Author(s): Joana R. Almeida, Andreia Palmeira, Alexandre Campos, Isabel Cunha, Micaela Freitas, Aldo Barreiro Felpeto, Maria V. Turkina, Vı́tor Vasconcelos, Madalena Pinto, Marta Correia-da-Silva, Emı́lia Sousa
Software Mentions: 1
Published: over 4 years ago

10.3390/biom10060820

An Isoform of the Oncogenic Splice Variant AIMP2-DX2 Detected by a Novel Monoclonal Antibody
Cited by: 1
Author(s): Dae Gyu Kim, Tin Nguyen, Nam Hoon Kwon, Junsik Sung, Semi Lim, Eun Joo Kang, Jihye Lee, Woo Young Seo, Arum Kim, Yoon Soo Chang, Hyunbo Shim, Sung Hoon Kim
Software Mentions: 1
Published: over 4 years ago

10.1007/s41048-018-0055-1

Molecular architecture of mouse and human pancreatic zymogen granules: protein components and their copy numbers
Cited by: 3
Author(s): JinSook Lee, Joseph A. Caruso, Garrett Hubbs, Patricia M. Schnepp, James H. Woods, Jingye Fang, Chunying Li, Kezhong Zhang, Paul M. Stemmer, Bhanu P. Jena, Xuequn Chen
Software Mentions: 1
Published: over 6 years ago

10.1042/BSR20150220

Human fallopian tube proteome shows high coverage of mesenchymal stem cells associated proteins
Cited by: 10
Author(s): Chenyuan Wang, Yang Liu, Cheng Chang, Songfeng Wu, Jie Gao, Yang Zhang, Yingjie Chen, Fan Zhong, Gaopi Deng
Software Mentions: 1
Published: almost 9 years ago

10.1042/BSR20203544

Comparative analysis of extracellular proteomes reveals putative effectors of the boxwood blight pathogens, Calonectria henricotiae and C. pseudonaviculata
Cited by: 3
Author(s): Xiao Yang, Michael B. McMahon, Sowmya Ramachandran, Wesley M. Garrett, Nicholas LeBlanc, Jo Anne Crouch, Nina Shishkoff, Douglas G. Luster
Software Mentions: 1
Published: over 3 years ago

10.1042/BSR20190395

Proteomic screening of plasma identifies potential noninvasive biomarkers associated with significant/advanced fibrosis in patients with nonalcoholic fatty liver disease
Cited by: 15
Author(s): Wei Hou, Michael G. Janech, Philip M. Sobolesky, Alison M. Bland, Salma Samsuddin, William Alazawi, Wing Kin Syn
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13068-014-0151-5

Identification and characterization of core cellulolytic enzymes from Talaromyces cellulolyticus (formerly Acremonium cellulolyticus) critical for hydrolysis of lignocellulosic biomass
Cited by: 61
Author(s): Hiroyuki Inoue, Stephen R. Decker, Larry E. Taylor, Shinichi Yano, Shigeki Sawayama
Software Mentions: 1
Published: about 10 years ago

10.1186/s13068-016-0580-4

Mapping N-linked glycosylation of carbohydrate-active enzymes in the secretome of Aspergillus nidulans grown on lignocellulose
Cited by: 21
Author(s): Marcelo Ventura Rubio, Mariane Paludetti Zubieta, João Paulo L. Franco Cairo, Felipe Calzado, Adriana Franco Paes Leme, Fábio M. Squina, Rolf A. Prade, André Damásio
Software Mentions: 1
Published: over 8 years ago

10.1186/1754-6834-3-22

Rapid optimization of enzyme mixtures for deconstruction of diverse pretreatment/biomass feedstock combinations
Cited by: 142
Author(s): Goutami Banerjee, Suzana Car, John S. Scott-Craig, Melissa S. Borrusch, Jonathan D. Walton
Software Mentions: 1
Published: about 14 years ago

10.1186/s13068-016-0525-y

Exploring glycoside hydrolases and accessory proteins from wood decay fungi to enhance sugarcane bagasse saccharification
Cited by: 37
Author(s): Fernanda Valadares, Thiago Augusto Gonçalves, Dayelle S. P. O. Gonçalves, Fernando Segato, Elisson Romanel, Adriane M. F. Milagres, Fábio M. Squina, André Ferraz
Software Mentions: 1
Published: over 8 years ago

10.1186/s13068-016-0518-x

Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199
Cited by: 55
Author(s): Rubén López-Mondejar, Daniela Zühlke, Tomáš Větrovský, Dörte Becher, Katharina Riedel, Petr Baldrián
Software Mentions: 1
Published: over 8 years ago

10.1186/1754-6834-5-52

A time course analysis of the extracellular proteome of Aspergillus nidulans growing on sorghum stover
Cited by: 64
Author(s): Sayali Saykhedkar, Anamika Ray, Patricia Ayoubi-Canaan, Steven D. Hartson, Rolf A. Prade, Andrew J. Mort
Software Mentions: 1
Published: over 12 years ago

10.1186/s13068-016-0476-3

Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass
Cited by: 57
Author(s): Willian Daniel Hahn Schneider, Thiago Augusto Gonçalves, Cristiane Uchima, Matthew Brian Couger, Rolf A. Prade, Fábio M. Squina, Aldo José Pinheiro Dillon, Marli Camassola
Software Mentions: 1
Published: over 8 years ago

10.1186/1754-6834-5-54

Thermoascus aurantiacus is a promising source of enzymes for biomass deconstruction under thermophilic conditions
Cited by: 79
Author(s): Shara McClendon, Tanveer S. Batth, Young-Mo Kim, Paul D. Adams, Blake A. Simmons, Steven W. Singer
Software Mentions: 1
Published: over 12 years ago

10.1186/s13068-021-01945-7

Multi-omics analysis provides insights into lignocellulosic biomass degradation by Laetiporus sulphureus ATCC 52600
Cited by: 10
Author(s): Fernanda Lopes de Figueiredo, Ana Carolina Piva de Oliveira, César Rafael Fanchini Terrasan, Thiago Augusto Gonçalves, Jaqueline Aline Gerhardt, Geizecler Tomazetto, Gabriela Félix Persinoti, Marcelo Ventura Rubio, Jennifer Andrea Tamayo Peña, Michelle Fernandes Araújo, Maria Augusta de Carvalho Silvello, Telma Teixeira Franco, Sarita Cândida Rabelo, Rosana Goldbeck, Fábio M. Squina, André Damásio
Software Mentions: 1
Published: over 3 years ago

10.1038/bcj.2015.39

A novel antibody–drug conjugate targeting SAIL for the treatment of hematologic malignancies
Cited by: 15
Author(s): S Y Kim, J.M.J. Theunissen, J Balibalos, Sindy Liao-Chan, Michael Babcock, Tiffany Wong, Belinda Cairns, Deyarina González, Edward Htun van der Horst, Michel Perez, Zoia Levashova, Lawrence Chinn, Joseph A. D’Alessio, Mark R. Flory, Abel Bermudez, David Y. Jackson, Edward Ha, Jorge Monteon, Maureen Bruhns, G Chen, T-S Migone
Software Mentions: 1
Published: over 9 years ago

10.1016/j.bonr.2019.100238

Early urine proteome changes in an implanted bone cancer rat model
Cited by: 9
Author(s): Ting Wang, Lujun Li, Weiwei Qin, Youhe Gao
Software Mentions: 1
Published: over 4 years ago

10.3390/brainsci8090167

The Healing Effect of Human Milk Fat Globule-EGF Factor 8 Protein (MFG-E8) in A Rat Model of Parkinson’s Disease
Cited by: 7
Author(s): Yoshiki Nakashima, Chika Miyagi-Shiohira, Hirofumi Noguchi, Takeshi Ômasa
Software Mentions: 1
Published: about 6 years ago

10.1186/s13058-020-01363-x

Extracellular vesicles from young women’s breast cancer patients drive increased invasion of non-malignant cells via the Focal Adhesion Kinase pathway: a proteomic approach
Cited by: 21
Author(s): Kimberly R. Jordan, Jill Hall, Troy Schedin, Michelle Borakove, Jenny J. Xian, Monika Dzieciątkowska, Traci R. Lyons, Pepper Schedin, Kirk C. Hansen, Virginia F. Borges
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13058-019-1228-7

Inhibition of the histone demethylase, KDM5B, directly induces re-expression of tumor suppressor protein HEXIM1 in cancer cells
Cited by: 16
Author(s): Monica M. Montano, I‐Ju Yeh, Yinghua Chen, Chris Hernandez, Janna Kiselar, María de la Fuente, Adriane M. Lawes, Marvin T. Nieman, Philip D. Kiser, James W. Jacobberger, Agata A. Exner, Matthew C. Lawes
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13058-020-01373-9

Shotgun proteomics coupled to nanoparticle-based biomarker enrichment reveals a novel panel of extracellular matrix proteins as candidate serum protein biomarkers for early-stage breast cancer detection
Cited by: 10
Author(s): Claudia Fredolini, Khyatiben V. Pathak, Luisa Paris, Kristina Chapple, Kristine Tsantilas, Matthew Rosenow, Tony Tegeler, Krystine Garcia-Mansfield, Davide Tamburro, Weidong Zhou, Paul Russo, Samuele Massarut, Francesco Facchiano, Claudio Belluco, Ruggero De Maria, Enrico Garaci, Lance A. Liotta, Emanuel F. Petricoin, Patrick Pirrotte
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13058-016-0697-1

Activation of IGF1R/p110β/AKT/mTOR confers resistance to α-specific PI3K inhibition
Cited by: 61
Author(s): Cédric Leroy, Pedro Marques Ramos, Karen Cornille, Débora Bonenfant, Christine Fritsch, Hans Voshol, Mohamed Bentires‐Alj
Software Mentions: 1
Published: over 8 years ago

10.1186/bcr3207

17beta-hydroxysteroid dehydrogenase type 1 modulates breast cancer protein profile and impacts cell migration
Cited by: 27
Author(s): Juliette A. Aka, Mouna Zerradi, François Houle, Jacques Huot, Sheng‐Xiang Lin
Software Mentions: 1
Published: over 12 years ago

10.1186/s13058-016-0741-1

CUB domain-containing protein 1 and the epidermal growth factor receptor cooperate to induce cell detachment
Cited by: 26
Author(s): Mary E. Law, Renan B. Ferreira, Bradley J. Davis, Paul J. Higgins, Jae-Sung Kim, Ronald K. Castellano, Sixue Chen, Hendrik Luesch, Brian K. Law
Software Mentions: 1
Published: over 8 years ago

10.1186/s12935-018-0625-9

Sulbactam-enhanced cytotoxicity of doxorubicin in breast cancer cells
Cited by: 43
Author(s): Shao-Hsuan Wen, Shey-Chiang Su, Bo-Huang Liou, Cheng-Yu Lin, Kuan‐Rong Lee
Software Mentions: 1
Published: about 6 years ago

10.1002/cam4.1225

Dynamic changes of urine proteome in a Walker 256 tumor-bearing rat model
Cited by: 46
Author(s): Jianhuang Wu, Zhengguang Guo, Youhe Gao
Software Mentions: 1
Published: about 7 years ago

10.1002/cam4.2240

Dynamic urinary proteomic analysis in a Walker 256 intracerebral tumor model
Cited by: 14
Author(s): Linpei Zhang, Yuqiu Li, Wenqi Meng, Yanying Ni, Youhe Gao
Software Mentions: 1
Published: over 5 years ago

10.1002/cam4.1885

Exosome proteomic analyses identify inflammatory phenotype and novel biomarkers in African American prostate cancer patients
Cited by: 63
Author(s): Gatikrushna Panigrahi, Prakash Priyadarshi Praharaj, Hiroki Kittaka, Asit Ranjan Mridha, Olen M. Black, Ravi Singh, Roger S. Mercer, Adrie van Bokhoven, Kathleen C. Torkko, Chapla Agarwal, Rajesh Agarwal, Zakaria Y. Abd Elmageed, Hariom Yadav, Santosh K. Mishra, Gagan Deep
Software Mentions: 1
Published: almost 6 years ago

10.1155/2015/320120

Upper Gastrointestinal Bleeding from Gastric Amyloidosis in a Patient with Smoldering Multiple Myeloma
Cited by: 8
Author(s): Mihajlo Gjeorgjievski, Treta Purohit, Mitual Amin, Paul J. Kurtin, Mitchell S. Cappell
Software Mentions: 1
Published: almost 10 years ago

10.1038/s41374-020-0403-x

Hemoglobin oxidation generates globin-derived peptides in atherosclerotic lesions and intraventricular hemorrhage of the brain, provoking endothelial dysfunction
Cited by: 30
Author(s): Niké Posta, Éva Csősz, Melinda Oros, Dávid Pethő, László Potor, Gergő Kalló, Zoltán Hendrik, Katalin Éva Sikura, Gábor Méhes, Csaba Tóth, József Posta, György Balla, József Balla
Software Mentions: 1
Published: over 4 years ago

10.3390/life10120311

Erythromycin Treatment of Brassica campestris Seedlings Impacts the Photosynthetic and Protein Synthesis Pathways
Cited by: 3
Author(s): Young-Eun Yoon, Hyun Min Cho, Dong-Won Bae, Sung Joong Lee, Hyeonji Choe, Min Chul Kim, Mi Sun Cheong, Yong-Bok Lee
Software Mentions: 1
Published: almost 4 years ago

10.3390/life11010021

Arabidopsis Plant Natriuretic Peptide Is a Novel Interactor of Rubisco Activase
Cited by: 3
Author(s): Ilona Turek, Chris Gehring, Helen Ruth Irving
Software Mentions: 1
Published: almost 4 years ago

10.26508/lsa.201900547

The iron–sulfur helicase DDX11 promotes the generation of single-stranded DNA for CHK1 activation
Cited by: 15
Author(s): Anna Katharina Simon, Sandra Kummer, Sonja Wild, Aleksandra Lezaja, Federico Teloni, Stanisław K. Jóźwiakowski, Matthias Altmeyer, Kerstin Gari
Software Mentions: 1
Published: almost 5 years ago

10.26508/lsa.202000742

Leishmania-infected macrophages release extracellular vesicles that can promote lesion development
Cited by: 23
Author(s): Anna Gioseffi, Timothy Hamerly, Kha Van, Naixin Zhang, Rhoel R. Dinglasan, Phillip A. Yates, Peter E. Kima
Software Mentions: 1
Published: about 4 years ago

10.1186/1475-2875-10-318

Mitochondrial NAD+-dependent malic enzyme from Anopheles stephensi: a possible novel target for malaria mosquito control
Cited by: 8
Author(s): Jennifer Pon, Eleonora Napoli, Shirley Luckhart, Cecilia R Giulivi
Software Mentions: 1
Published: about 13 years ago

10.1186/s12936-015-0655-x

Effects of cyclin-dependent kinase inhibitor Purvalanol B application on protein expression and developmental progression in intra-erythrocytic Plasmodium falciparum parasites
Cited by: 5
Author(s): Kristen M. Bullard, Carolyn J. Broccardo, Susan M. Keenan
Software Mentions: 1
Published: over 9 years ago

10.3390/md17010002

Spinochrome D Attenuates Doxorubicin-Induced Cardiomyocyte Death via Improving Glutathione Metabolism and Attenuating Oxidative Stress
Cited by: 31
Author(s): Chang Shin Yoon, Hyoung Kyu Kim, Natalia P. Mishchenko, Е. А. Васильева, Sergey A. Fedoreyev, Valentin A. Stonik, Jin Han
Software Mentions: 1
Published: almost 6 years ago

10.3390/md17070413

Identification of A Novel Antibacterial Peptide from Atlantic Mackerel belonging to the GAPDH-Related Antimicrobial Family and Its In Vitro Digestibility
Cited by: 22
Author(s): Clément Offret, Ismaı̈l Fliss, Laurent Bazinet, André Marette, Lucie Beaulieu
Software Mentions: 1
Published: over 5 years ago

10.3390/md15080246

The Neuroprotective Marine Compound Psammaplysene A Binds the RNA-Binding Protein HNRNPK
Cited by: 8
Author(s): Marco Boccitto, Nayoung Lee, Satoshi Sakamoto, Lynn A. Spruce, Hiroshi Handa, Jon Clardy, Steven H. Seeholzer, Robert G. Kalb
Software Mentions: 1
Published: over 7 years ago

10.3390/md17080436

Transcriptomic and Proteomic Analysis of the Tentacles and Mucus of Anthopleura dowii Verrill, 1869
Cited by: 18
Author(s): Santos Ramírez-Carreto, Rosario Vera-Estrella, Tobías Portillo-Bobadilla, Alexei F. Licea-Navarro, Johanna Bernáldez-Sarabia, E. Rudiño-Piñera, Jérôme Verleyen, Estefanía Rodríguez, Claudia Rodríguez-Almazán
Software Mentions: 1
Published: over 5 years ago

10.3390/ma13225187

Proteomic Analysis of Porcine-Derived Collagen Membrane and Matrix
Cited by: 9
Author(s): Jung Seok Lee, Goran Mitulović, Layla Panahipour, Reinhard Gruber
Software Mentions: 1
Published: about 4 years ago

10.1016/j.mtbio.2020.100066

Comparative proteomic analysis of human mesenchymal stromal cell behavior on calcium phosphate ceramics with different osteoinductive potential
Cited by: 13
Author(s): Ziryan Othman, Ronny Mohren, Berta Cillero‐Pastor, Zhao-Qing Shen, Y.S.N.W. Lacroix, Alexander P. M. Guttenplan, Zeinab Tahmasebi Birgani, Lars Eijssen, Theo M. Luider, Sabine van Rijt, Pamela Habibović
Software Mentions: 1
Published: over 4 years ago

10.1016/j.matbio.2020.02.005

Basement membrane ligands initiate distinct signalling networks to direct cell shape
Cited by: 36
Author(s): Michael J. Randles, Franziska Lausecker, Jonathan D. Humphries, Adam Byron, Simon J. Clark, Jeffrey H. Miner, Roy Zent, Rachel Lennon
Software Mentions: 1
Published: over 4 years ago

10.1155/2019/7479107

Matrix Metalloproteinase-9-Dependent Release of IL-1βby Human Eosinophils
Cited by: 20
Author(s): Stéphane Esnault, Elizabeth A. Kelly, Sean H Johnson, Larissa P. Delain, Madeline J Haedt, Andrea Noll, Nathan Sandbo, Nizar N. Jarjour
Software Mentions: 1
Published: almost 6 years ago

10.1155/2015/619480

Molecular and Biochemical Characterization of Recombinant Guinea Pig Tumor Necrosis Factor-Alpha
Cited by: 2
Author(s): Vijaya R. Dirisala, Amminikutty Jeevan, Lan H. Ly, David N. McMurray
Software Mentions: 1
Published: almost 10 years ago

10.3390/medicines3030023

Characterisation of Bone Beneficial Components from Australian Wallaby Bone
Cited by: 0
Author(s): Weiguo Lao, Xiaoli Jin, Yi Tan, Linda Xiao, Matthew P. Padula, David Bishop, Brian Reedy, Madeleine Ong, Mohammad Amjad Kamal, Xianqin Qu
Software Mentions: 1
Published: about 8 years ago

10.3390/medsci6010008

The Role of Cadaverine Synthesis on Pneumococcal Capsule and Protein Expression
Cited by: 10
Author(s): Mary F. Nakamya, Moses B. Ayoola, Seongbin Park, Leslie A. Shack, Edwin Swiatlo, Bindu Nanduri
Software Mentions: 1
Published: almost 7 years ago

10.1590/0074-02760170340

Identification of the alpha-enolase P46 in the extracellular membrane vesicles of Bacteroides fragilis
Cited by: 3
Author(s): Thaís B. Ferreira, Camilla Nunes Dos Reis Trindade, Petra Bell, André Teixeira-Ferreira, Jonás Perales, Rossiane C. Vommaro, Regina Maria Cavalcanti Pilotto Domingues, Eliane de Oliveira Ferreira
Software Mentions: 1
Published: over 6 years ago

10.1039/c8mt00239h

Copper stress in Staphylococcus aureus leads to adaptive changes in central carbon metabolism
Cited by: 46
Author(s): Emma Tarrant, Gustavo Pelicioli Riboldi, Matthew R. McIlvin, Jack Alan Stevenson, Anna Barwinska-Sendra, Louisa J Stewart, Mak A. Saito, Kevin J. Waldron
Software Mentions: 1
Published: almost 6 years ago

10.1111/1751-7915.12706

Functional characterization of LotP from <scp>L</scp> iberibacter asiaticus 
Cited by: 9
Author(s): Flavia del Valle Loto, Janelle F. Coyle, Kaylie A. Padgett, Fernando A. Pagliai, C. L. Gardner, Graciela L. Lorca, Claudio F. González
Software Mentions: 1
Published: over 7 years ago

10.15698/mic2017.09.589

Farnesol inhibits translation to limit growth and filamentation in C. albicans and S. cerevisiae
Cited by: 21
Author(s): Nkechi Eucharia Egbe, Tawni Dornelles, Caroline Mary Paget, Lydia M. Castelli, Mark P. Ashe
Software Mentions: 1
Published: about 7 years ago

10.1186/s12934-018-1006-8

Restoration of biofuel production levels and increased tolerance under ionic liquid stress is enabled by a mutation in the essential Escherichia coli gene cydC
Cited by: 29
Author(s): Thomas Eng, Philipp Demling, Robin A. Herbert, Yan Chen, Veronica T. Benites, Joel Martin, Anna Lipzen, Edward E. K. Baidoo, Lars M. Blank, Young-Mo Kim, Aindrila Mukhopadhyay
Software Mentions: 1
Published: about 6 years ago

10.1186/s12934-020-01358-5

Secretion of a low and high molecular weight β-glycosidase by Yarrowia lipolytica
Cited by: 13
Author(s): Paul Swietalski, Frank Hetzel, Ines Seitl, Lutz Fischer
Software Mentions: 1
Published: over 4 years ago

10.1186/s12934-016-0564-x

Proteomic analysis of the signaling pathway mediated by the heterotrimeric Gα protein Pga1 of Penicillium chrysogenum
Cited by: 15
Author(s): Ulises Carrasco-Navarro, Rosario Vera-Estrella, Bronwyn J. Barkla, Eduardo Zúñiga-León, Horacio Reyes‐Vivas, F Fernandez, Francisco Fierro
Software Mentions: 1
Published: about 8 years ago

10.1186/1475-2859-11-79

Manipulation of the carbon storage regulator system for metabolite remodeling and biofuel production in Escherichia coli
Cited by: 47
Author(s): Adrienne E. McKee, Becky J. Rutherford, Dylan Chivian, Edward Baidoo, Darmawi Juminaga, Dwight Kuo, Peter I. Benke, Jeffrey A. Dietrich, Magali Suzanne, Adam P. Arkin, Young-Mo Kim, Paul D. Adams, Jay D. Keasling, Swapnil R. Chhabra
Software Mentions: 1
Published: over 12 years ago

10.1264/jsme2.ME16110

Physical, Chemical and Proteomic Evidence of Potato Suberin Degradation by the Plant Pathogenic Bacterium Streptomyces scabiei
Cited by: 17
Author(s): Carole Beaulieu, Amadou Sidibé, Raoudha Jabloune, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Ernest Monga, Mark A. Bernards
Software Mentions: 1
Published: almost 9 years ago

10.1264/jsme2.ME15195

Proteome Analyses of Soil Bacteria Grown in the Presence of Potato Suberin, a Recalcitrant Biopolymer
Cited by: 6
Author(s): Amadou Sidibé, Anne-Marie Simao-Beaunoir, Sylvain Lerat, Lauriane Giroux, Vicky Toussaint, Carole Beaulieu
Software Mentions: 1
Published: almost 9 years ago

10.1002/mbo3.1012

Proteomic analysis of Aspergillus niger 3.316 under heat stress
Cited by: 10
Author(s): Xiaogeng Deng, Bin Du, Fengmei Zhu, Yanan Gao, Jun Li
Software Mentions: 1
Published: over 4 years ago

10.1099/mic.0.070755-0

Identification of extracellular surface-layer associated proteins in Lactobacillus acidophilus NCFM
Cited by: 92
Author(s): Brant R. Johnson, Kurt Selle, Sarah O’Flaherty, Yong Jun Goh, Todd R. Klaenhammer
Software Mentions: 1
Published: about 11 years ago

10.1128/MRA.01280-18

The Foliar Endophyte Phialocephala scopiformis DAOMC 229536 Proteome When Grown on Wood Used as the Sole Carbon Source
Cited by: 2
Author(s): Jennifer M. Bhatnagar, Grzegorz Sabat, Daniel Cullen
Software Mentions: 1
Published: almost 6 years ago

10.1186/s40168-020-00845-6

Gut microbiota-derived indole 3-propionic acid protects against radiation toxicity via retaining acyl-CoA-binding protein
Cited by: 93
Author(s): He Xiao, Ming Cui, Yuan Li, Jing Dong, Shuqin Zhang, Changchun Zhu, Mian Jiang, Tong Zhu, Bin Wang, Haichao Wang, Saijun Fan
Software Mentions: 1
Published: over 4 years ago

10.3390/microorganisms8121883

Proteomic 2D-DIGE Analysis of Milk Whey from Dairy Cows with Staphylococcus aureus Mastitis Reveals Overexpression of Host Defense Proteins
Cited by: 9
Author(s): Shaimaa Abdelmegid, D.F. Kelton, Jeff Caswell, Gordon M. Kirby
Software Mentions: 1
Published: almost 4 years ago

10.3390/microorganisms7050144

MAV_4644 Interaction with the Host Cathepsin Z Protects Mycobacterium avium subsp. hominissuis from Rapid Macrophage Killing
Cited by: 4
Author(s): Matthew S. Lewis, Lia Danelishvili, Sasha J. Rose, Luiz E. Bermudez
Software Mentions: 1
Published: over 5 years ago

10.3390/microorganisms7090367

Sample Preservation and Storage Significantly Impact Taxonomic and Functional Profiles in Metaproteomics Studies of the Human Gut Microbiome
Cited by: 29
Author(s): Oskar Hickl, Anna Heintz‐Buschart, Anke Trautwein-Schult, Rajna Hercog, Peer Bork, Paul Wilmes, Dörte Becher
Software Mentions: 1
Published: about 5 years ago

10.3390/microorganisms9020253

Label-Free Quantitative Proteomics Analysis in Susceptible and Resistant Brassica napus Cultivars Infected with Xanthomonas campestris pv. campestris
Cited by: 4
Author(s): Tabibul Islam, Bok-Rye Lee, Van Hien La, Dong-Won Bae, Woo‐Jin Jung, Tae-Hwan Kim
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12943-015-0305-5

A conserved region within interferon regulatory factor 5 controls breast cancer cell migration through a cytoplasmic and transcription-independent mechanism
Cited by: 7
Author(s): Erica Maria Pimenta, Betsy J. Barnes
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12943-021-01397-5

SPOP-mediated ubiquitination and degradation of PDK1 suppresses AKT kinase activity and oncogenic functions
Cited by: 31
Author(s): Qiwei Jiang, Nana Zheng, Lang Bu, Xiaomei Zhang, Xiaoling Zhang, Yuanzhong Wu, Yaqing Su, Lei Wang, Xiaomin Zhang, Shancheng Ren, Xiangpeng Dai, Depei Wu, Wei Xie, Wenyi Wei, Yasheng Zhu, Jianping Guo
Software Mentions: 1
Published: over 3 years ago

10.1186/1476-4598-10-145

NONO and RALY proteins are required for YB-1 oxaliplatin induced resistance in colon adenocarcinoma cell lines
Cited by: 48
Author(s): Serges P. Tsofack, Chantal Garand, Chris Sereduk, Donald Chow, Meraj Aziz, David R.P. Guay, Hongwei Yin, Michel Lebel
Software Mentions: 1
Published: almost 13 years ago

10.1016/j.molcel.2017.06.009

Wnt-Dependent Inactivation of the Groucho/TLE Co-repressor by the HECT E3 Ubiquitin Ligase Hyd/UBR5
Cited by: 47
Author(s): Joshua E Flack, Juliusz Mieszczanek, Nikola Novcic, Mariann Bienz
Software Mentions: 1
Published: over 7 years ago

10.1016/j.molcel.2017.01.019

PRMT5-Dependent Methylation of the TIP60 Coactivator RUVBL1 Is a Key Regulator of Homologous Recombination
Cited by: 99
Author(s): Thomas L. Clarke, María Pilar Sánchez-Bailón, Kelly Chiang, John J. Reynolds, Joaquín Herrero-Ruíz, Tiago M. Bandeiras, Pedro M. Matías, Sarah Maslen, J. Mark Skehel, Grant S. Stewart, Clare C. Davies
Software Mentions: 1
Published: over 7 years ago

10.1016/j.molcel.2019.08.003

SUMO-Chain-Regulated Proteasomal Degradation Timing Exemplified in DNA Replication Initiation
Cited by: 37
Author(s): Ivan Psakhye, Federica Castellucci, Dana Branzei
Software Mentions: 1
Published: about 5 years ago

10.1074/mcp.M113.036764

Antiandrogens Act as Selective Androgen Receptor Modulators at the Proteome Level in Prostate Cancer Cells*
Cited by: 10
Author(s): Greg N. Brooke, Simon C. Gamble, Michael A. Hough, Shajna Begum, Dafydd Alwyn Dart, Michael Odontiadis, Susan Powell, Flavia Marialucia Fioretti, Rosie A. Bryan, Jonathan Waxman, Robin Wait, Charlotte Bevan
Software Mentions: 1
Published: over 9 years ago

10.1074/mcp.M116.059774

Fasciola hepatica Surface Tegument: Glycoproteins at the Interface of Parasite and Host
Cited by: 45
Author(s): Ravidà Alessandra, Krystyna Cwiklinski, Allison Aldridge, Paul Clarke, Róisı́n Thompson, Jared Q. Gerlach, Michelle Kilcoyne, Cornelis H. Hokke, John P. Dalton, Sandra M. O’Neill
Software Mentions: 1
Published: about 8 years ago

10.1074/mcp.M116.058552

HVint: A Strategy for Identifying Novel Protein-Protein Interactions in Herpes Simplex Virus Type 1
Cited by: 17
Author(s): Paul Ashford, Anna Hernandez, Todd M. Greco, Anna Buch, Beate Sodeik, Ileana M. Cristea, Kay Grünewald, Adrian J. Shepherd, Maya Topf
Software Mentions: 1
Published: about 8 years ago

10.1016/j.mcpro.2021.100079

Evaluation and Refinement of Sample Preparation Methods for Extracellular Matrix Proteome Coverage
Cited by: 29
Author(s): Maxwell C. McCabe, Lauren R. Schmitt, Ryan C. Hill, Monika Dzieciątkowska, Mark Maslanka, Willeke F. Daamen, Toin H. Van Kuppevelt, Danique J. Hof, Kirk C. Hansen
Software Mentions: 1
Published: almost 4 years ago

10.1074/mcp.M112.018846

Proteomic Profiling of Mycobacterium tuberculosis Identifies Nutrient-starvation-responsive Toxin–antitoxin Systems
Cited by: 124
Author(s): Jakob Albrethsen, Jeppe Agner, Sander R. Piersma, Peter Højrup, Thang V. Pham, Karin Weldingh, Connie R. Jiménez, Peter Andersen, Ida Rosenkrands
Software Mentions: 1
Published: over 11 years ago

10.1074/mcp.M115.055541

Adjuvant-induced Human Monocyte Secretome Profiles Reveal Adjuvant- and Age-specific Protein Signatures
Cited by: 22
Author(s): Djin-Ye Oh, David J. Dowling, Saima Ahmed, Hyungwon Choi, Spencer E. Brightman, Ilana Bergelson, Sebastian Tobias Berger, John F K Sauld, Matthew A. Pettengill, Alvin T. Kho, Henry Pollack, Hanno Steen, Ofer Levy
Software Mentions: 1
Published: over 8 years ago

10.1074/mcp.M115.053934

The Extracellular Vesicles of the Helminth Pathogen, Fasciola hepatica: Biogenesis Pathways and Cargo Molecules Involved in Parasite Pathogenesis*
Cited by: 174
Author(s): Krystyna Cwiklinski, Eduardo de la Torre-Escudero, María Trelis, Dolores Bernal, Philippe J. Dufresne, Gerry Brennan, Sandra M. O’Neill, José F. Tort, Steve Paterson, Antonio Marcilla, John P. Dalton, Mark W. Robinson
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules26071913

Clinical Amyloid Typing by Proteomics: Performance Evaluation and Data Sharing between Two Centres
Cited by: 4
Author(s): Diana Canetti, Francesca Brambilla, Nigel B. Rendell, Paola Nocerino, Janet A. Gilbertson, Dario Di Silvestre, Andrea Bergamaschi, Francesca Lavatelli, Giampaolo Merlini, Julian D. Gillmore, Vittorio Bellotti, Pierluigi Mauri, Graham W. Taylor
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules23071762

Preparation and Use of a General Solid-Phase Intermediate to Biomimetic Scaffolds and Peptide Condensations
Cited by: 2
Author(s): J. Geno Samaritoni, Jacek Martynow, Martin J. O’Donnell, William L. Scott
Software Mentions: 1
Published: over 6 years ago

10.3390/molecules25112685

High Hydrostatic Pressure-Assisted Enzymatic Hydrolysis Affect Mealworm Allergenic Proteins
Cited by: 17
Author(s): Abir Boukil, Véronique Perreault, Julien Chamberland, Samir Mezdour, Yves Pouliot, Alain Doyen
Software Mentions: 1
Published: over 4 years ago

10.3390/molecules25194395

Sericin-Induced Melanogenesis in Cultured Retinal Pigment Epithelial Cells Is Associated with Elevated Levels of Hydrogen Peroxide and Inflammatory Proteins
Cited by: 1
Author(s): Ayyad Zartasht Khan, Catherine Jackson, Tor Paaske Utheim, Sjur Reppe, Dipak Sapkota, Ole Kristoffer Olstad, Bernd Thiede, Jon Roger Eidet
Software Mentions: 1
Published: about 4 years ago

10.3390/molecules21010104

Exploration of Scaffolds from Natural Products with Antiplasmodial Activities, Currently Registered Antimalarial Drugs and Public Malarial Screen Data
Cited by: 6
Author(s): Samuel Egieyeh, James Syce, Alan Christoffels, Sarel F. Malan
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules25051184

Combination of High Hydrostatic Pressure and Ultrafiltration to Generate a New Emulsifying Ingredient from Egg Yolk
Cited by: 7
Author(s): Mélanie Giarratano, Pauline Duffuler, Julien Chamberland, G. J. Brisson, James D. House, Yves Pouliot, Alain Doyen
Software Mentions: 1
Published: over 4 years ago

10.3390/molecules26020351

Effects of Hexane on Protein Profile, Solubility and Foaming Properties of Defatted Proteins Extracted from Tenebrio molitor Larvae
Cited by: 15
Author(s): Alexia Gravel, Alice Marciniak, Manon Couture, Alain Doyen
Software Mentions: 1
Published: almost 4 years ago

10.3390/molecules171012086

c-IAP1 Binds and Processes PCSK9 Protein: Linking the c-IAP1 in a TNF-α Pathway to PCSK9-Mediated LDLR Degradation Pathway
Cited by: 27
Author(s): Weiming Xu, Lizhi Liu, D. Hornby
Software Mentions: 1
Published: about 12 years ago

10.3390/molecules25184173

Dependence of Biocatalysis on D/H Ratio: Possible Fundamental Differences for High-Level Biological Taxons
Cited by: 4
Author(s): I. A. Zlatskiy, Т. В. Плетенева, Alexander Skripnikov, Т. В. Гребенникова, Т. В. Максимова, Н. В. Антипова, O. V. Levitskaya, Mariia Makarova, I. L. Selivanenko, А. В. Сыроешкин
Software Mentions: 1
Published: about 4 years ago

10.3390/molecules26154484

Postharvest Drying Techniques Regulate Secondary Metabolites and Anti-Neuroinflammatory Activities of Ganoderma lucidum
Cited by: 4
Author(s): Nooruddin Bin Sadiq, Dahye Ryu, Jwa Yeong Cho, A-Hyeon Lee, Dae-Geun Song, Banzragch Dorjsembe, Jin‐Chul Kim, Jooyeoun Jung, Chu-Won Nho, Muhammad Hamayun, Seung‐Hoon Yang, Ho-Youn Kim
Software Mentions: 1
Published: over 3 years ago

10.3390/molecules21020148

A SILAC-Based Approach Elicits the Proteomic Responses to Vancomycin-Associated Nephrotoxicity in Human Proximal Tubule Epithelial HK-2 Cells
Cited by: 11
Author(s): Zhi Ling Li, Shu Feng Zhou
Software Mentions: 1
Published: almost 9 years ago

10.3390/molecules21030290

The Role of CD44 and ERM Proteins in Expression and Functionality of P-glycoprotein in Breast Cancer Cells
Cited by: 43
Author(s): Deep Pokharel, Matthew P. Padula, Jie Lu, Ritu Jaiswal, Steven P. Djordjevic, Mary Bebawy
Software Mentions: 1
Published: over 8 years ago

10.1002/minf.202000163

Pharmacoinformatic Investigation of Medicinal Plants from East Africa
Cited by: 21
Author(s): Conrad V. Simoben, Ammar Qaseem, Aurélien F. A. Moumbock, Kiran K. Telukunta, Stefan Günther, Wolfgang Sippl, Fidele Ntie‐Kang
Software Mentions: 1
Published: about 4 years ago

10.1186/s13024-017-0196-6

The lysosomal protein cathepsin L is a progranulin protease
Cited by: 72
Author(s): Chris W. Lee, Jeannette N. Stankowski, Jeannie Chew, Casey Cook, Ying‐Wai Lam, Sandra Almeida, Yari Carlomagno, Kwok‐Fai Lau, Mercedes Prudencio, Fen Biao Gao, Matthew Bogyo, Dennis W. Dickson, Leonard Petrucelli
Software Mentions: 1
Published: over 7 years ago

Projects: pypi: Scaffold

Papers Mentioning Scaffold 1,866