pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.3402/jev.v2i0.22097

Exosomal ITGA3 interferes with non-cancerous prostate cell functions and is increased in urine exosomes of metastatic prostate cancer patients
Cited by: 121
Author(s): Irene V. Bijnsdorp, Albert A. Geldof, Mehrdad Lavaei, Sander R. Piersma, R. Jeroen A. van Moorselaar, Connie R. Jiménez
Software Mentions: 1
Published: almost 12 years ago

10.1002/jev2.12069

Identification of anti‐inflammatory vesicle‐like nanoparticles in honey
Cited by: 34
Author(s): Xingyi Chen, Baolong Liu, Xingzhi Li, Thuy T. An, You Zhou, Gang Li, Judy Wu‐Smart, Sophie Alvarez, Michael J. Naldrett, James D. Eudy, Gregory Kubik, Richard A. Wilson, Stephen D. Kachman, Juan Cui, Jiujiu Yu
Software Mentions: 1
Published: almost 4 years ago

10.1080/20013078.2018.1463779

Proteomic analysis reveals different composition of extracellular vesicles released by two <i>Trypanosoma cruzi</i> strains associated with their distinct interaction with host cells
Cited by: 56
Author(s): Kleber Silva Ribeiro, Camilla Ioshida Vasconcellos, Rodrigo Pedro Soares, Maria Tays Mendes, Cameron Ellis, Marcela Aguilera-Flores, Igor C. Almeida, Sérgio Schenkman, Leo Kei Iwai, Ana Claúdia Torrecilhas
Software Mentions: 1
Published: over 6 years ago

10.1080/20013078.2019.1663043

Systematic characterization of extracellular vesicle sorting domains and quantification at the single molecule – single vesicle level by fluorescence correlation spectroscopy and single particle imaging
Cited by: 90
Author(s): Giulia Corso, Wolf Heusermann, Dominic Trojer, André Görgens, Emmanuelle Steib, Johannes Voshol, Alexandra Graff, Christel Genoud, Yi Lee, Justin Hean, Joel Z. Nordin, Oscar P. B. Wiklander, Samir El Andaloussi, Nicole Meisner‐Kober
Software Mentions: 1
Published: about 5 years ago

10.3390/jof6040365

Laser Capture Microdissection-Assisted Protein Biomarker Discovery from Coccidioides-Infected Lung Tissue
Cited by: 1
Author(s): Natalie M. Mitchell, Surendra Dasari, Thomas E. Grys, Douglas F. Lake
Software Mentions: 1
Published: almost 4 years ago

10.3390/jof7080624

H2O2 Induces Major Phosphorylation Changes in Critical Regulators of Signal Transduction, Gene Expression, Metabolism and Developmental Networks in Aspergillus nidulans
Cited by: 9
Author(s): Ulises Carrasco-Navarro, Jesús Aguirre
Software Mentions: 1
Published: over 3 years ago

10.1155/2014/476047

Examination of the Anaerobic Growth of<i>Campylobacter concisus</i>Strains
Cited by: 32
Author(s): Hoyul Lee, Ruonan Ma, Michael Grimm, Stephen M. Riordan, Ruiting Lan, Ling Zhong, Mark J. Raftery, Li Zhang
Software Mentions: 1
Published: almost 11 years ago

10.1155/2021/8864183

PAC-Mediated AKI Protection Is Critically Mediated but Does Not Exclusively Depend on Cell-Derived Microvesicles
Cited by: 0
Author(s): Hassan Dihazi, Katrin Schwarze, Susann Patschan, Müller Ga, Oliver Ritter, Michael Zeisberg, Daniel Patschan
Software Mentions: 1
Published: over 3 years ago

10.1186/1756-8722-7-35

Structural determinants of human ζ-globin mRNA stability
Cited by: 4
Author(s): Zhenning He, Decheng Song, Sebastiaan van Zalen, Janice Russell
Software Mentions: 1
Published: over 10 years ago

10.1186/s13045-020-00869-3

Ubiquitination of the DNA-damage checkpoint kinase CHK1 by TRAF4 is required for CHK1 activation
Cited by: 15
Author(s): Xinfang Yu, Wei Li, Haidan Liu, Qipan Deng, Xu Wang, Hui Hu, Zijun Y. Xu-Monette, Wei Xiong, Zhongxin Lu, Ken H. Young, Wei Wang, Yong Li
Software Mentions: 1
Published: over 4 years ago

10.1016/j.ijpddr.2018.06.006

Clinical validation of molecular markers of macrocyclic lactone resistance in Dirofilaria immitis
Cited by: 42
Author(s): Cristina Ballesteros, Cassan N. Pulaski, Catherine Bourguinat, Kathy Keller, Roger K. Prichard, Timothy G. Geary
Software Mentions: 1
Published: almost 6 years ago

10.4049/jimmunol.2000448

The Metalloproteinase ADAMTS5 Is Expressed by Interstitial Inflammatory Cells in IgA Nephropathy and Is Proteolytically Active on the Kidney Matrix
Cited by: 6
Author(s): Scott L. Taylor, Molly Whitfield, Jonathan Barratt, Athanasios Didangelos
Software Mentions: 1
Published: about 4 years ago

10.1155/2014/390781

Combined Phosphoproteomics and Bioinformatics Strategy in Deciphering Drug Resistant Related Pathways in Triple Negative Breast Cancer
Cited by: 2
Author(s): Xinyu Deng, Morris Kohanfars, Huan Ming Hsu, Puneet Souda, Joseph Capri, Julian P. Whitelegge, Helena R. Chang
Software Mentions: 1
Published: about 10 years ago

10.1155/2015/536537

A Proteomic Characterization of Bordetella pertussis Clinical Isolates Associated with a California State Pertussis Outbreak
Cited by: 8
Author(s): Yulanda M. Williamson, Hércules Moura, Jennifer Whitmon, Adrian R. Woolfitt, David Schieltz, Jon C. Rees, Stephanie Guo, Heather Kirkham, Daniel Bouck, Edwin W. Ades, M. Lucia Tondella, George M. Carlone, Jacquelyn S. Sampson, John R. Barr
Software Mentions: 1
Published: over 9 years ago

10.1155/2011/896476

Proteomic-Based Biosignatures in Breast Cancer Classification and Prediction of Therapeutic Response
Cited by: 26
Author(s): Jianbo He, Stephen A. Whelan, Ming Lu, Dejun Shen, D. Chung, Romaine E. Saxton, Kym F. Faull, Julian P. Whitelegge, Helena R. Chang
Software Mentions: 1
Published: about 13 years ago

10.1155/2012/397103

Plasma Fractionation Enriches Post-Myocardial Infarction Samples Prior to Proteomics Analysis
Cited by: 5
Author(s): Lisandra E. de Castro Brás, Kristine Y. DeLeon, Yonggang Ma, Qiuxia Dai, Kevin Hakala, Susan T. Weintraub, Merry L. Lindsey
Software Mentions: 1
Published: over 12 years ago

10.1186/s40425-017-0269-7

Tumor-derived exosomes induce CD8+ T cell suppressors
Cited by: 124
Author(s): Brian T. Maybruck, Lukas W. Pfannenstiel, Marcela Diaz-Montero, Brian Gastman
Software Mentions: 1
Published: over 7 years ago

10.1038/onc.2017.340

AKT overactivation can suppress DNA repair via p70S6 kinase-dependent downregulation of MRE11
Cited by: 33
Author(s): D Piscitello, Dhaval Varshney, Sérgio Lilla, Maria Grazia Vizioli, Claire Reid, Vera Gorbunova, Andrei Seluanov, David A. Gillespie, Peter D. Adams
Software Mentions: 1
Published: about 7 years ago

10.1038/s41389-020-0225-0

Profiling of subcellular EGFR interactome reveals hnRNP A3 modulates nuclear EGFR localization
Cited by: 12
Author(s): Tong Hong Wang, Chih‐Ching Wu, Kuo‐Yen Huang, Wen-Yu Chuang, Chuen Hsueh, Hsin-Jung Li, Chi-Yuan Chen
Software Mentions: 1
Published: over 4 years ago

10.1016/j.jlr.2021.100099

Apolipoprotein A-I modulates HDL particle size in the absence of apolipoprotein A-II
Cited by: 6
Author(s): John T. Melchior, Scott E. Street, Tomáš Vaisar, Rachel C Hart, Jay Jerome, Zsuzsanna Kuklenyik, Noémie Clouet-Foraison, Carissa Thornock, Shimpi Bedi, Amy S. Shah, Jere P. Segrest, Jay W. Heinecke, W. Sean Davidson
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.jlr.2021.100107

Pregnancy is accompanied by larger high density lipoprotein particles and compositionally distinct subspecies
Cited by: 13
Author(s): John T. Melchior, Debi K. Swertfeger, Jamie Morris, Scott E. Street, Carri R. Warshak, Jeffrey A. Welge, Alan T. Remaley, Janet M. Catov, W. Sean Davidson, Laura A. Woollett
Software Mentions: 1
Published: almost 4 years ago

10.5539/jmbr.v7n1p50

Proteomic Approach for Extracting Cytoplasmic Proteins from Streptococcus sanguinis using Mass Spectrometry
Cited by: 5
Author(s): Fadi El-Rami, Kristina Nelson, Ping Xu
Software Mentions: 1
Published: over 7 years ago

10.1007/s00239-017-9781-0

Experimental Evolution of Escherichia coli Harboring an Ancient Translation Protein
Cited by: 34
Author(s): Betuel Kacar, Xueliang Ge, Suparna Sanyal, Eric A. Gaucher
Software Mentions: 1
Published: over 7 years ago

10.1186/2049-9256-1-8

Mass spectrometry for the detection of potential psychiatric biomarkers
Cited by: 32
Author(s): Armand G. Ngounou Wetie, Izabela Sokolowska, Kelly L. Wormwood, Katherine Beglinger, Tanja Maria Michel, Johannes Thome, Costel C. Darie, Alisa G. Woods
Software Mentions: 1
Published: over 11 years ago

10.1186/1750-2187-6-11

Characterization of the Rac guanine nucleotide exchange factor P-Rex1 in platelets
Cited by: 18
Author(s): Joseph E. Aslan, Alex M. Spencer, Cassandra P. Loren, Jiaqing Pang, Heidi Welch, Daniel Greenberg, Owen J. T. McCarty
Software Mentions: 1
Published: about 13 years ago

10.5334/1750-2187-12-3

Transcriptional and Post-Translational Targeting of Myocyte Stress Protein 1 (MS1) by the JNK Pathway in Cardiac Myocytes
Cited by: 0
Author(s): Joanna M. Hay, Eva Simone Jordan, Gareth J. Browne, Andrew R. Bottrill, Sally A. Prigent, Martin Dickens
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.20054

SUMOylation of NaV1.2 channels mediates the early response to acute hypoxia in central neurons
Cited by: 37
Author(s): Leigh D. Plant, Jeremy D. Marks, Steve A.N. Goldstein
Software Mentions: 1
Published: almost 8 years ago

10.7554/eLife.09345

Matrix metalloproteinase 14 is required for fibrous tissue expansion
Cited by: 37
Author(s): Susan H. Taylor, Ching-Yan Chloé Yeung, Nicholas S. Kalson, Yinhui Lu, Paola Zigrino, Tobias Starborg, Stacey Warwood, David Holmes, Elizabeth G. Canty‐Laird, Cornelia Mauch, Karl E. Kadler
Software Mentions: 1
Published: about 9 years ago

10.7554/eLife.26524

Multiple short windows of calcium-dependent protein kinase 4 activity coordinate distinct cell cycle events during Plasmodium gametogenesis
Cited by: 52
Author(s): Hanwei Fang, Natacha Klages, Bastien Baechler, Evelyn Hillner, Lu Yu, Mercedes Pardo, Jyoti S. Choudhary, Mathieu Brochet
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.45002

A ribosome assembly stress response regulates transcription to maintain proteome homeostasis
Cited by: 110
Author(s): Benjamin Albert, Isabelle C Kos-Braun, Anthony K. Henras, Christophe Dez, Maria Paula Rueda, Xu Zhang, Olivier Gadal, Martin Koš, David Shore
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.38097

Identification of cryptic subunits from an apicomplexan ATP synthase
Cited by: 49
Author(s): Diego Huet, Esther Rajendran, Giel G. van Dooren, Sebastian Lourido
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.13292

PCH1 integrates circadian and light-signaling pathways to control photoperiod-responsive growth in Arabidopsis
Cited by: 67
Author(s): He Huang, Chan Yul Yoo, Rebecca K. Bindbeutel, Jessica Goldsworthy, Allison Tielking, Sophie Alvarez, Michael J. Naldrett, Bradley S. Evans, Meng Chen, Dmitri A. Nusinow
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.44474

Anion channel SLAH3 is a regulatory target of chitin receptor-associated kinase PBL27 in microbial stomatal closure
Cited by: 43
Author(s): Yi Liu, Tobias Maierhofer, Katarzyna Rybak, Jan Sklenář, Andrew Breakspear, Matthew G. Johnston, Judith Fliegmann, Shouguang Huang, M. Rob G. Roelfsema, Georg Felix, Christine Faulkner, Frank L.H. Menke, Dietmar Geiger, Rainer Hedrich, Silke Robatzek
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.65667

Ancient role of sulfakinin/cholecystokinin-type signalling in inhibitory regulation of feeding processes revealed in an echinoderm
Cited by: 19
Author(s): Ana B. Tinoco, Antón Barreiro‐Iglesias, Luis Alfonso Yáñez-Guerra, Jérôme Delroisse, Ya Zhang, Elizabeth F Gunner, Cleidiane G. Zampronio, Alexandra M. E. Jones, Michaela Egertová, Maurice R. Elphick
Software Mentions: 1
Published: about 3 years ago

10.7554/eLife.23049

TAPBPR bridges UDP-glucose:glycoprotein glucosyltransferase 1 onto MHC class I to provide quality control in the antigen presentation pathway
Cited by: 54
Author(s): Andreas Neerincx, Clemens Hermann, Robin Antrobus, Andy van Hateren, Huan Cao, Nico Trautwein, Stefan Stevanović, Tim Elliott, Janet E. Deane, Louise H. Boyle
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.68049

Mesenchymal stromal cell aging impairs the self-organizing capacity of lung alveolar epithelial stem cells
Cited by: 18
Author(s): Diptiman Chanda, Mohammad Rehan, S. Ray Smith, K.G. Dsouza, Yong Wang, Karen Bernard, Deepali Kurundkar, Vinayak Memula, Kensuke Kojima, James A. Mobley, Gloria A. Benavides, Victor Darley‐Usmar, Young-il Kim, Jaroslaw W. Żmijewski, Jessy Deshane, Stijn De Langhe, Victor J. Thannickal
Software Mentions: 1
Published: about 3 years ago

10.7554/eLife.40907

Bid maintains mitochondrial cristae structure and function and protects against cardiac disease in an integrative genomics study
Cited by: 18
Author(s): Christi Salisbury-Ruf, Clinton C. Bertram, Aurélia Vergeade, Daniel S. Lark, Qiong Shi, Marlene L Heberling, N. Fortune, G Donald Okoye, W. Gray Jerome, Quinn S. Wells, Joshua P. Fessel, Javid Moslehi, Heidi Chen, L. Jackson Roberts, Olivier Boutaud, Eric R. Gamazon, Sandra S. Zinkel
Software Mentions: 1
Published: about 6 years ago

10.7554/eLife.16096

The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic
Cited by: 51
Author(s): Joel M. Swenson, Serafin U. Colmenares, Amy R. Strom, Sylvain V. Costes, Gary H. Karpen
Software Mentions: 1
Published: over 8 years ago

10.7554/eLife.33150

Identification of PNG kinase substrates uncovers interactions with the translational repressor TRAL in the oocyte-to-embryo transition
Cited by: 18
Author(s): Masatoshi Hara, Sebastian Lourido, Boryana Petrova, Hua Lou, Jessica R. Von Stetina, Helena Kashevsky, Benjamin E. Turk, Terry L. Orr‐Weaver
Software Mentions: 1
Published: over 6 years ago

10.7554/eLife.21083

Plasmodium falciparum ligand binding to erythrocytes induce alterations in deformability essential for invasion
Cited by: 54
Author(s): Xavier Sisquella, Thomas Nebl, J. K. Thompson, Lachlan Whitehead, Brian M. Malpede, Nichole D. Salinas, Kelly L. Rogers, Niraj H. Tolia, Andrea Fleig, Joseph O’Neill, Wai‐Hong Tham, F. David Horgen, Alan F. Cowman
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.07205

Local chromatin environment of a Polycomb target gene instructs its own epigenetic inheritance
Cited by: 90
Author(s): Scott Berry, Matthew Hartley, Tjelvar S. G. Olsson, Caroline Dean, Martin Howard
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.49570

Persistent Mycobacterium tuberculosis infection in mice requires PerM for successful cell division
Cited by: 14
Author(s): Ruojun Wang, Kaj Kreutzfeldt, Hélène Botella, Julien Vaubourgeix, Dirk Schnappinger, Sabine Ehrt
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.26938

A broadly distributed toxin family mediates contact-dependent antagonism between gram-positive bacteria
Cited by: 118
Author(s): John C. Whitney, S. Brook Peterson, Rachel Kim, Manuel Pazos, Adrian J. Verster, Matthew C. Radey, Hemantha D. Kulasekara, Mary Q Ching, Nathan P Bullen, D T W Bryant, Young Ah Goo, Michael G. Surette, Elhanan Borenstein, Waldemar Vollmer, Joseph D. Mougous
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.57640

Echinoderms provide missing link in the evolution of PrRP/sNPF-type neuropeptide signalling
Cited by: 23
Author(s): Luis Alfonso Yáñez-Guerra, Xingxing Zhong, Ismail Moghul, Thomas Butts, Cleidiane G. Zampronio, Alexandra M. E. Jones, Olivier Mirabeau, Maurice R. Elphick
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.18638

Dynamic control of Hsf1 during heat shock by a chaperone switch and phosphorylation
Cited by: 159
Author(s): Zheng Xu, Joanna Krakowiak, Nikit Patel, Ali Beyzavi, Jideofor Ezike, Ahmad S. Khalil, David Pincus
Software Mentions: 1
Published: about 8 years ago

10.7554/eLife.59879

Feedback control of Wnt signaling based on ultrastable histidine cluster co-aggregation between Naked/NKD and Axin
Cited by: 8
Author(s): Melissa V. Gammons, M. Renko, Joshua E Flack, Juliusz Mieszczanek, Mariann Bienz
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.45284

An ESCRT-LEM protein surveillance system is poised to directly monitor the nuclear envelope and nuclear transport system
Cited by: 82
Author(s): David J Thaller, Matteo Allegretti, Sapan Borah, Paolo Ronchi, Martin Beck, C. Patrick Lusk
Software Mentions: 1
Published: over 5 years ago

10.7554/eLife.11182

Sampling the conformational space of the catalytic subunit of human γ-secretase
Cited by: 521
Author(s): Xiao Chen Bai, Eeson Rajendra, Guanghui Yang, Yigong Shi, Sjors H.W. Scheres
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.08231

The deca-GX3 proteins Yae1-Lto1 function as adaptors recruiting the ABC protein Rli1 for iron-sulfur cluster insertion
Cited by: 56
Author(s): Viktoria Désirée Paul, Ulrich Mühlenhoff, Martin Stümpfig, Jan Seebacher, Karl G. Kugler, Christian Renicke, Christof Taxis, Anne‐Claude Gavin, Antonio J. Pierik, Roland Lill
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.46592

Casein kinase 1 family proteins promote Slimb-dependent Expanded degradation
Cited by: 10
Author(s): Alexander D. Fulford, Maxine Holder, David Frith, Ambrosius P. Snijders, Nicolas Tapon, Paulo S. Ribeiro
Software Mentions: 1
Published: about 5 years ago

10.7554/eLife.08887

The serine protease hepsin mediates urinary secretion and polymerisation of Zona Pellucida domain protein uromodulin
Cited by: 87
Author(s): Martina Brunati, Simone Perucca, Ling Han, Angela Cattaneo, Francesco Consolato, Annapaola Andolfo, Céline Schaeffer, Eric Olinger, Jianhao Peng, Sara Santambrogio, Romain Perrier, Shuo Li, Marcel Bokhove, Ángela Bachi, Edith Hummler, Olivier Devuyst, Qingyu Wu, Luca Jovine, Luca Rampoldi
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.61264

The deubiquitylase Ubp15 couples transcription to mRNA export
Cited by: 1
Author(s): Fanny Eyboulet, Célia Jeronimo, Jacques Côté, François Robert
Software Mentions: 1
Published: almost 4 years ago

10.7554/eLife.33116

Sorting of a multi-subunit ubiquitin ligase complex in the endolysosome system
Cited by: 21
Author(s): Xi Yang, Felichi Mae Arines, Weichao Zhang, Ming Li
Software Mentions: 1
Published: almost 7 years ago

10.7554/eLife.07794

Quantitative isoform-profiling of highly diversified recognition molecules
Cited by: 48
Author(s): Dietmar Schreiner, Jovan Simicevic, Erik Ahrné, Alexander Schmidt, Peter Scheiffele
Software Mentions: 1
Published: over 9 years ago

10.7554/eLife.50026

The Wolbachia cytoplasmic incompatibility enzyme CidB targets nuclear import and protamine-histone exchange factors
Cited by: 54
Author(s): John F. Beckmann, Gagan Deep Sharma, Luis Méndez, Hongli Chen, Mark Hochstrasser
Software Mentions: 1
Published: almost 5 years ago

10.7554/eLife.22219

Control of PNG kinase, a key regulator of mRNA translation, is coupled to meiosis completion at egg activation
Cited by: 18
Author(s): Masatoshi Hara, Boryana Petrova, Terry L. Orr‐Weaver
Software Mentions: 1
Published: over 7 years ago

10.7554/eLife.66079

In vivo proximity labeling identifies cardiomyocyte protein networks during zebrafish heart regeneration
Cited by: 15
Author(s): Mira I. Pronobis, Susan Zheng, Sumeet Pal Singh, Joseph D. Goldman, Kenneth D. Poss
Software Mentions: 1
Published: over 3 years ago

10.7554/eLife.57921

Robo functions as an attractive cue for glial migration through SYG-1/Neph
Cited by: 3
Author(s): Zhongwei Qu, Albert Zhang, Dong Yan
Software Mentions: 1
Published: about 4 years ago

10.7554/eLife.67294

The GNU subunit of PNG kinase, the developmental regulator of mRNA translation, binds BIC-C to localize to RNP granules
Cited by: 2
Author(s): Emir E Avilés-Pagán, Masatoshi Hara, Terry L. Orr‐Weaver
Software Mentions: 1
Published: over 3 years ago

10.3390/ijms15069644

Flowering as the Most Highly Sensitive Period of Grapevine (Vitis vinifera L. cv Mourvèdre) to the Botryosphaeria Dieback Agents Neofusicoccum parvum and Diplodia seriata Infection
Cited by: 22
Author(s): Alessandro Spagnolo, Philippe Larignon, Maryline Magnin-Robert, Agnès Hovasse, Clara Cilindre, Alain Van Dorsselaer, Christophe Clément, Christine Schaeffer-Reiss, Florence Fontaine
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms150610169

Total Protein Extraction for Metaproteomics Analysis of Methane Producing Biofilm: The Effects of Detergents
Cited by: 18
Author(s): Hung Jen Huang, Wei Yu Chen, Jer Horng Wu
Software Mentions: 1
Published: over 10 years ago

10.3390/ijms16010857

Exploring the Arabidopsis Proteome: Influence of Protein Solubilization Buffers on Proteome Coverage
Cited by: 9
Author(s): Claudius Marondedze, Aloysius Wong, Arnoud Groen, Natalia Serrano, Boris R. Janković, Kathryn S. Lilley, Chris Gehring, Ludivine Thomas
Software Mentions: 1
Published: almost 10 years ago

10.3390/ijms17010041

Alisertib Induces Cell Cycle Arrest, Apoptosis, Autophagy and Suppresses EMT in HT29 and Caco-2 Cells
Cited by: 31
Author(s): Bao Jun Ren, Zhi Wei Zhou, Da Jian Zhu, Yan Ju, Jin Wu, Man Ouyang, Xiao Wu Chen, Shu Feng Zhou
Software Mentions: 1
Published: almost 9 years ago

10.3390/ijms17040597

Active and Repressive Chromatin-Associated Proteome after MPA Treatment and the Role of Midkine in Epithelial Monolayer Permeability
Cited by: 4
Author(s): Niamat Khan, Christof Lenz, Lutz Binder, D. V. Krishna Pantakani, Abdul R. Asif
Software Mentions: 1
Published: over 8 years ago

10.3390/ijms18112237

iTRAQ-Based Identification of Proteins Related to Muscle Growth in the Pacific Abalone, Haliotis discus hannai
Cited by: 9
Author(s): Jianfang Huang, You Wang, Xuan Luo, Caihuan Ke
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms19020577

Cytokeratin-8 in Anaplastic Thyroid Carcinoma: More Than a Simple Structural Cytoskeletal Protein
Cited by: 13
Author(s): Dadong Guo, Qinqin Xu, Sarabjot Pabla, John M. Koomen, Paul Biddinger, Ashok Sharma, Simarjot Pabla, Rafał Pacholczyk, Chien Chung Chang, Kevin Friedrich, Kamran Mohammed, Robert C. Smallridge, John A. Copland, Jin-Xiong She, Paul M. Weinberger
Software Mentions: 1
Published: almost 7 years ago

10.3390/ijms19051461

Combined Transcriptomics, Proteomics and Bioinformatics Identify Drug Targets in Spinal Cord Injury
Cited by: 18
Author(s): Jure Tica, Elizabeth J. Bradbury, Athanasios Didangelos
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19072042

A Liquid Chromatography with Tandem Mass Spectrometry-Based Proteomic Analysis of Cells Cultured in DMEM 10% FBS and Chemically Defined Medium Using Human Adipose-Derived Mesenchymal Stem Cells
Cited by: 8
Author(s): Yoshiki Nakashima, Saifun Nahar, Chika Miyagi-Shiohira, Takao Kinjo, Naoya Kobayashi, Issei Saitoh, Masami Watanabe, Jiro Fujita, Hirofumi Noguchi
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms19092535

A Cell Junctional Protein Network Associated with Connexin-26
Cited by: 12
Author(s): Ana Carla Batissoco, Rodrigo Salazar-Silva, Jeanne Oiticica, Ricardo Ferreira Bento, Regina Célia Mingroni-Netto, Luciana A. Haddad
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms19103038

Elucidating Functions of FleQ in Xanthomonas oryzae pv. oryzae by Comparative Proteomic and Phenotypic Analyses
Cited by: 12
Author(s): Nahee Bae, Hye-Jee Park, Hanbi Park, Minyoung Kim, Eunsoo Do, Sang-Wook Han
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms19102847

Global Signaling Profiling in a Human Model of Tumorigenic Progression Indicates a Role for Alternative RNA Splicing in Cellular Reprogramming
Cited by: 1
Author(s): Joseph A. Caruso, Nicholas J. Carruthers, Bryan J. Thibodeau, Timothy J. Geddes, Alan A. Dombkowski, Paul M. Stemmer
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms19103213

Quiescin Sulfhydryl Oxidase 1 (QSOX1) Secreted by Lung Cancer Cells Promotes Cancer Metastasis
Cited by: 28
Author(s): Hye Jin Sung, Jung Mo Ahn, Yeon Hee Yoon, Sang Su Na, Young Jin Choi, Yong In Kim, Soo-Youn Lee, Eung Bae Lee, Sukki Cho, Je Yoel Cho
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms19113497

A Comparison of Proteins Expressed between Human and Mouse Adipose-Derived Mesenchymal Stem Cells by a Proteome Analysis through Liquid Chromatography with Tandem Mass Spectrometry
Cited by: 9
Author(s): Saifun Nahar, Yoshiki Nakashima, Chika Miyagi-Shiohira, Takao Kinjo, Naoya Kobayashi, Issei Saitoh, Masami Watanabe, Hirofumi Noguchi, Jiro Fujita
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms20010203

Proteomic Signatures Reveal Differences in Stress Response, Antioxidant Defense and Proteasomal Activity in Fertile Men with High Seminal ROS Levels
Cited by: 26
Author(s): Tânia R. Dias, Luna Samanta, Ashok Agarwal, Peter Natesan Pushparaj, Manesh Kumar Panner Selvam, Rakesh Sharma
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20020314

Presence of Round Cells Proteins do not Interfere with Identification of Human Sperm Proteins from Frozen Semen Samples by LC-MS/MS
Cited by: 10
Author(s): Manesh Kumar Panner Selvam, Ashok Agarwal, Tânia R. Dias, Ana D. Martins, Luna Samanta
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20030677

Altered Molecular Pathways in the Proteome of Cryopreserved Sperm in Testicular Cancer Patients before Treatment
Cited by: 11
Author(s): Manesh Kumar Panner Selvam, Ashok Agarwal, Peter Natesan Pushparaj
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms20112672

Identification of Proteins Differentially Expressed by Adipose-derived Mesenchymal Stem Cells Isolated from Immunodeficient Mice
Cited by: 7
Author(s): Yoshiki Nakashima, Saifun Nahar, Chika Miyagi-Shiohira, Takao Kinjo, Naoya Kobayashi, Shinji Kitamura, Issei Saitoh, Masami Watanabe, Jiro Fujita, Hirofumi Noguchi
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms20133159

Testis-Specific Isoform of Na/K-ATPase (ATP1A4) Interactome in Raft and Non-Raft Membrane Fractions from Capacitated Bovine Sperm
Cited by: 7
Author(s): Gayathri D. Rajamanickam, John P. Kastelic, Jacob C. Thundathil
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21051848

LY75 Ablation Mediates Mesenchymal-Epithelial Transition (MET) in Epithelial Ovarian Cancer (EOC) Cells Associated with DNA Methylation Alterations and Suppression of the Wnt/β-Catenin Pathway
Cited by: 5
Author(s): Sadia Mehdi, Magdalena Bachvarova, Marie‐Pier Scott‐Boyer, Arnaud Droit, Dimcho Bachvarov
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21051686

Transcriptomics and Proteomics Reveal the Cellulose and Pectin Metabolic Processes in the Tension Wood (Non-G-Layer) of Catalpa bungei
Cited by: 16
Author(s): Yumei Xiao, Fei Yi, Juanjuan Ling, Zhi Wang, Kun Zhao, Nan Lu, Guanzheng Qu, Lisheng Kong, Wenjun Ma, Junhui Wang
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21072634

Identification and Characterization of the Lactating Mouse Mammary Gland Citrullinome
Cited by: 4
Author(s): Guangyuan Li, Coleman H. Young, Bryce Snow, Amanda O. Christensen, M. Kristen Demoruelle, Venkatesh V. Nemmara, Paul R. Thompson, Heather M. Rothfuss, Brian D. Cherrington
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21082741

HIV-1 and Amyloid Beta Remodel Proteome of Brain Endothelial Extracellular Vesicles
Cited by: 10
Author(s): Ibolya E. András, Brice Sewell, Michał Toborek
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21103614

Acid Soil Improvement Enhances Disease Tolerance in Citrus Infected by Candidatus Liberibacter asiaticus
Cited by: 9
Author(s): Бо Ли, Shuangchao Wang, Yi Zhang, Dewen Qiu
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21134713

Sequesterpene Lactones Isolated from a Brazilian Cerrado Plant (Eremanthus spp.) as Anti-Proliferative Compounds, Characterized by Functional and Proteomic Analysis, Are Candidates for New Therapeutics in Glioblastoma
Cited by: 7
Author(s): Clarice Izumi, Hélen Julie Laure, Nayara Gonçalves Barbosa, Carolina Hassibe Thomé, Germano Aguiar Ferreira, João Paulo Barreto de Sousa, Norberto Peporine Lopes, José César Rosa
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21144817

Distinct Proteomic Profile of Spermatozoa from Men with Seminomatous and Non-Seminomatous Testicular Germ Cell Tumors
Cited by: 4
Author(s): Manesh Kumar Panner Selvam, Marco G. Alves, Tânia R. Dias, Peter Natesan Pushparaj, Ashok Agarwal
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21155402

Investigating the Product Profiles and Structural Relationships of New Levansucrases with Conventional and Non-Conventional Substrates
Cited by: 7
Author(s): Andrea Hill, Salwa Karboune, Tarun Jairaj Narwani, Alexandre G. de Brevern
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms21176130

Sestrin2 Phosphorylation by ULK1 Induces Autophagic Degradation of Mitochondria Damaged by Copper-Induced Oxidative Stress
Cited by: 12
Author(s): Heejeong Kim, Byeong Tak Jeon, Isaac M. Kim, Sydney J. Bennett, Carolyn M. Lorch, Martônio Ponte Viana, Jacob F. Myers, Caroline J. Trupp, Zachary T. Whipps, Mondira Kundu, Soonkyu Chung, Xinghui Sun, Oleh Khalimonchuk, Jaekwon Lee, Seung Hyun Ro
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21176422

The Molecular Floodgates of Stress-Induced Senescence Reveal Translation, Signalling and Protein Activity Central to the Post-Mortem Proteome
Cited by: 2
Author(s): Valerie C. Wasinger, Darren Curnoe, Ceridwen Boel, Naomi Machin, Hsiao Mei Goh
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21186754

Dysregulation of Key Proteins Associated with Sperm Motility and Fertility Potential in Cancer Patients
Cited by: 7
Author(s): Manesh Kumar Panner Selvam, Renata Finelli, Saradha Baskaran, Ashok Agarwal
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21186769

Xylella fastidiosa subsp. pauca Strains Fb7 and 9a5c from Citrus Display Differential Behavior, Secretome, and Plant Virulence
Cited by: 5
Author(s): Jessica Brito de Souza, Hebréia O. Almeida-Souza, Paulo A. Zaini, Mónica N. Alves, Aline Gomes de Souza, Paulo Marques Pierry, da Silva, Luiz Ricardo Goulart, Abhaya M. Dandekar, Rafael Nascimento
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21218286

L1CAM as an E-selectin Ligand in Colon Cancer
Cited by: 7
Author(s): Fanny M. Deschepper, Roberta Zoppi, Martina Pirro, Paul J. Hensbergen, Fabio Dall’Olio, Maximillianos Kotsias, Richard A. Gardner, Daniel I. R. Spencer, Paula A. Videira
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21228537

Exploring the Role of a Novel Peptide from Allomyrina dichotoma Larvae in Ameliorating Lipid Metabolism in Obesity
Cited by: 6
Author(s): Sung Mun Bae, Meiqi Fan, Youngjin Choi, Yujiao Tang, Gi Seok Jeong, Kyungjae Myung, Byung-Gyu Kim, Min Jung Kim
Software Mentions: 1
Published: about 4 years ago

10.3390/ijms21239055

Secretome Analysis of Inductive Signals for BM-MSC Transdifferentiation into Salivary Gland Progenitors
Cited by: 5
Author(s): Mahmoud Mona, Firas Kobeissy, Yun-Jong Park, Rehae Miller, Wafaa Saleh, Jin Koh, Mi‐Jeong Yoo, Sixue Chen, Seunghee Cha
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21239326

Acceleration of Carbon Fixation in Chilling-Sensitive Banana under Mild and Moderate Chilling Stresses
Cited by: 1
Author(s): Jing Liu, Tomáš Takáč, Ganjun Yi, Houbin Chen, Yingying Wang, Jian Meng, Wenya Yuan, Yehuan Tan, Tangyuan Ning, Zhenting He, Jozef Šamaj, Chao Xu
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21249453

The Providence Mutation (βK82D) in Human Hemoglobin Substantially Reduces βCysteine 93 Oxidation and Oxidative Stress in Endothelial Cells
Cited by: 9
Author(s): Snehasis Jana, Michael Brad Strader, Abdu I. Alayash
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21249459

Postnatal Growth Restriction in Mice Alters Cardiac Protein Composition and Leads to Functional Impairment in Adulthood
Cited by: 1
Author(s): Joseph R. Visker, Lawrence J. Dangott, Eric C. Leszczynski, David P. Ferguson
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms21249674

Transient Receptor Potential Vanilloid 6 (TRPV6) Proteins Control the Extracellular Matrix Structure of the Placental Labyrinth
Cited by: 4
Author(s): Manuel Winter, Petra Weißgerber, Karolin Klein, Femke Lux, Daniela Yildiz, Ulrich Wissenbach, Stephan E. Philipp, Markus R. Meyer, Veit Flockerzi, Claudia Fecher‐Trost
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22041686

Proteomics Complementation of the Rat Uterotrophic Assay for Estrogenic Endocrine Disruptors: A Roadmap of Advancing High Resolution Mass Spectrometry-Based Shotgun Survey to Targeted Biomarker Quantifications
Cited by: 1
Author(s): László Prókai, Fatima Rahlouni, Khadiza Zaman, Vien Nguyen, Katalin Prókai-Tátrai
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22041722

A Proteomics Analysis of Calmodulin-Binding Proteins in Dictyostelium discoideum during the Transition from Unicellular Growth to Multicellular Development
Cited by: 0
Author(s): William D. Kim, Shyong Quan Yap, Robert J. Huber
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22084172

Diverse Roles of Mitochondria in Renal Injury from Environmental Toxicants and Therapeutic Drugs
Cited by: 5
Author(s): Lawrence H. Lash
Software Mentions: 1
Published: over 3 years ago

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