pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.3390/ijms20112672

Identification of Proteins Differentially Expressed by Adipose-derived Mesenchymal Stem Cells Isolated from Immunodeficient Mice
Cited by: 7
Author(s): Yoshiki Nakashima, Saifun Nahar, Chika Miyagi-Shiohira, Takao Kinjo, Naoya Kobayashi, Shinji Kitamura, Issei Saitoh, Masami Watanabe, Jiro Fujita, Hirofumi Noguchi
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms20133159

Testis-Specific Isoform of Na/K-ATPase (ATP1A4) Interactome in Raft and Non-Raft Membrane Fractions from Capacitated Bovine Sperm
Cited by: 7
Author(s): Gayathri D. Rajamanickam, John P. Kastelic, Jacob C. Thundathil
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms21051848

LY75 Ablation Mediates Mesenchymal-Epithelial Transition (MET) in Epithelial Ovarian Cancer (EOC) Cells Associated with DNA Methylation Alterations and Suppression of the Wnt/β-Catenin Pathway
Cited by: 5
Author(s): Sadia Mehdi, Magdalena Bachvarova, Marie‐Pier Scott‐Boyer, Arnaud Droit, Dimcho Bachvarov
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21051686

Transcriptomics and Proteomics Reveal the Cellulose and Pectin Metabolic Processes in the Tension Wood (Non-G-Layer) of Catalpa bungei
Cited by: 16
Author(s): Yumei Xiao, Fei Yi, Juanjuan Ling, Zhi Wang, Kun Zhao, Nan Lu, Guanzheng Qu, Lisheng Kong, Wenjun Ma, Junhui Wang
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21072634

Identification and Characterization of the Lactating Mouse Mammary Gland Citrullinome
Cited by: 4
Author(s): Guangyuan Li, Coleman H. Young, Bryce Snow, Amanda O. Christensen, M. Kristen Demoruelle, Venkatesh V. Nemmara, Paul R. Thompson, Heather M. Rothfuss, Brian D. Cherrington
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21082741

HIV-1 and Amyloid Beta Remodel Proteome of Brain Endothelial Extracellular Vesicles
Cited by: 10
Author(s): Ibolya E. András, Brice Sewell, Michał Toborek
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21103614

Acid Soil Improvement Enhances Disease Tolerance in Citrus Infected by Candidatus Liberibacter asiaticus
Cited by: 9
Author(s): Бо Ли, Shuangchao Wang, Yi Zhang, Dewen Qiu
Software Mentions: 1
Published: over 6 years ago

10.3390/ijms21134713

Sequesterpene Lactones Isolated from a Brazilian Cerrado Plant (Eremanthus spp.) as Anti-Proliferative Compounds, Characterized by Functional and Proteomic Analysis, Are Candidates for New Therapeutics in Glioblastoma
Cited by: 7
Author(s): Clarice Izumi, Hélen Julie Laure, Nayara Gonçalves Barbosa, Carolina Hassibe Thomé, Germano Aguiar Ferreira, João Paulo Barreto de Sousa, Norberto Peporine Lopes, José César Rosa
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21144817

Distinct Proteomic Profile of Spermatozoa from Men with Seminomatous and Non-Seminomatous Testicular Germ Cell Tumors
Cited by: 4
Author(s): Manesh Kumar Panner Selvam, Marco G. Alves, Tânia R. Dias, Peter Natesan Pushparaj, Ashok Agarwal
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21155402

Investigating the Product Profiles and Structural Relationships of New Levansucrases with Conventional and Non-Conventional Substrates
Cited by: 7
Author(s): Andrea Hill, Salwa Karboune, Tarun Jairaj Narwani, Alexandre G. de Brevern
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21176130

Sestrin2 Phosphorylation by ULK1 Induces Autophagic Degradation of Mitochondria Damaged by Copper-Induced Oxidative Stress
Cited by: 12
Author(s): Heejeong Kim, Byeong Tak Jeon, Isaac M. Kim, Sydney J. Bennett, Carolyn M. Lorch, Martônio Ponte Viana, Jacob F. Myers, Caroline J. Trupp, Zachary T. Whipps, Mondira Kundu, Soonkyu Chung, Xinghui Sun, Oleh Khalimonchuk, Jaekwon Lee, Seung Hyun Ro
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21176422

The Molecular Floodgates of Stress-Induced Senescence Reveal Translation, Signalling and Protein Activity Central to the Post-Mortem Proteome
Cited by: 2
Author(s): Valerie C. Wasinger, Darren Curnoe, Ceridwen Boel, Naomi Machin, Hsiao Mei Goh
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21186754

Dysregulation of Key Proteins Associated with Sperm Motility and Fertility Potential in Cancer Patients
Cited by: 7
Author(s): Manesh Kumar Panner Selvam, Renata Finelli, Saradha Baskaran, Ashok Agarwal
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21186769

Xylella fastidiosa subsp. pauca Strains Fb7 and 9a5c from Citrus Display Differential Behavior, Secretome, and Plant Virulence
Cited by: 5
Author(s): Jessica Brito de Souza, Hebréia O. Almeida-Souza, Paulo A. Zaini, Mónica N. Alves, Aline Gomes de Souza, Paulo Marques Pierry, da Silva, Luiz Ricardo Goulart, Abhaya M. Dandekar, Rafael Nascimento
Software Mentions: 1
Published: about 6 years ago

10.3390/ijms21218286

L1CAM as an E-selectin Ligand in Colon Cancer
Cited by: 7
Author(s): Fanny M. Deschepper, Roberta Zoppi, Martina Pirro, Paul J. Hensbergen, Fabio Dall’Olio, Maximillianos Kotsias, Richard A. Gardner, Daniel I. R. Spencer, Paula A. Videira
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21228537

Exploring the Role of a Novel Peptide from Allomyrina dichotoma Larvae in Ameliorating Lipid Metabolism in Obesity
Cited by: 6
Author(s): Sung Mun Bae, Meiqi Fan, Youngjin Choi, Yujiao Tang, Gi Seok Jeong, Kyungjae Myung, Byung-Gyu Kim, Min Jung Kim
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21239055

Secretome Analysis of Inductive Signals for BM-MSC Transdifferentiation into Salivary Gland Progenitors
Cited by: 5
Author(s): Mahmoud Mona, Firas Kobeissy, Yun-Jong Park, Rehae Miller, Wafaa Saleh, Jin Koh, Mi‐Jeong Yoo, Sixue Chen, Seunghee Cha
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21239326

Acceleration of Carbon Fixation in Chilling-Sensitive Banana under Mild and Moderate Chilling Stresses
Cited by: 1
Author(s): Jing Liu, Tomáš Takáč, Ganjun Yi, Houbin Chen, Yingying Wang, Jian Meng, Wenya Yuan, Yehuan Tan, Tangyuan Ning, Zhenting He, Jozef Šamaj, Chao Xu
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21249453

The Providence Mutation (βK82D) in Human Hemoglobin Substantially Reduces βCysteine 93 Oxidation and Oxidative Stress in Endothelial Cells
Cited by: 9
Author(s): Snehasis Jana, Michael Brad Strader, Abdu I. Alayash
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21249459

Postnatal Growth Restriction in Mice Alters Cardiac Protein Composition and Leads to Functional Impairment in Adulthood
Cited by: 1
Author(s): Joseph R. Visker, Lawrence J. Dangott, Eric C. Leszczynski, David P. Ferguson
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms21249674

Transient Receptor Potential Vanilloid 6 (TRPV6) Proteins Control the Extracellular Matrix Structure of the Placental Labyrinth
Cited by: 4
Author(s): Manuel Winter, Petra Weißgerber, Karolin Klein, Femke Lux, Daniela Yildiz, Ulrich Wissenbach, Stephan E. Philipp, Markus R. Meyer, Veit Flockerzi, Claudia Fecher‐Trost
Software Mentions: 1
Published: almost 6 years ago

10.3390/ijms22041686

Proteomics Complementation of the Rat Uterotrophic Assay for Estrogenic Endocrine Disruptors: A Roadmap of Advancing High Resolution Mass Spectrometry-Based Shotgun Survey to Targeted Biomarker Quantifications
Cited by: 1
Author(s): László Prókai, Fatima Rahlouni, Khadiza Zaman, Vien Nguyen, Katalin Prókai-Tátrai
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22041722

A Proteomics Analysis of Calmodulin-Binding Proteins in Dictyostelium discoideum during the Transition from Unicellular Growth to Multicellular Development
Cited by: 0
Author(s): William D. Kim, Shyong Quan Yap, Robert J. Huber
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22084172

Diverse Roles of Mitochondria in Renal Injury from Environmental Toxicants and Therapeutic Drugs
Cited by: 5
Author(s): Lawrence H. Lash
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22105314

EMS Derived Wheat Mutant BIG8-1 (Triticum aestivum L.)—A New Drought Tolerant Mutant Wheat Line
Cited by: 8
Author(s): Marlon-Schylor L. le Roux, N. Francois V. Burger, Maré Vlok, K. Kunert, Christopher A. Cullis, Anna‐Maria Botha
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms22157935

Platelet-Rich Fibrin Increases BMP2 Expression in Oral Fibroblasts via Activation of TGF-β Signaling
Cited by: 7
Author(s): Zahra Kargarpour, Jila Nasirzade, Layla Panahipour, Goran Mitulović, Richard J. Miron, Reinhard Gruber
Software Mentions: 1
Published: about 5 years ago

10.3390/ijms22158066

Photoreceptor Compartment-Specific TULP1 Interactomes
Cited by: 3
Author(s): Lindsey A. Ebke, Satyabrata Sinha, Gayle J. Pauer, Stephanie A. Hagstrom
Software Mentions: 1
Published: about 5 years ago

10.3389/fchem.2020.00098

Biochemical Characterization of Oyster and Clam Galectins: Selective Recognition of Carbohydrate Ligands on Host Hemocytes and Perkinsus Parasites
Cited by: 10
Author(s): Gerardo R. Vasta, Chiguang Feng, Satoshi Tasumi, Kelsey Abernathy, M.A. Bianchet, Iain B. H. Wilson, Katharina Paschinger, Lai-Xi Wang, Muddasar Iqbal, Anita Ghosh, Md. Ruhul Amin, Brina A. Smith, Sean M. Brown, Aren Vista
Software Mentions: 1
Published: over 6 years ago

10.3934/microbiol.2017.4.885

Identification of temperature regulated factors of <em>Campylobacter jejuni</em> and their potential roles in virulence
Cited by: 5
Author(s): Yue Tang, Shaun Cawthraw, Mary C. Bagnall, Adriana J Gielbert, Martin J. Woodward, Liljana Petrovska
Software Mentions: 1
Published: over 9 years ago

10.1186/s13568-016-0276-y

Myceliophthora thermophila M77 utilizes hydrolytic and oxidative mechanisms to deconstruct biomass
Cited by: 21
Author(s): Hï¿1⁄2vila Brognaro dos Santos, Thaís Milena de Souza Bezerra, J. G. C. Pradella, P. S. Delabona, Deise Juliana da Silva Lima, Eleni Gomes, Steve Hartson, Janet Rogers, Brian Couger, Rolf A. Prade
Software Mentions: 1
Published: almost 10 years ago

10.1186/s13568-020-00969-w

A novel and more efficient biosynthesis approach for human insulin production in Escherichia coli (E. coli)
Cited by: 15
Author(s): Kamini Govender, Tricia Naicker, Johnson Lin, Sooraj Baijnath, Anil A. Chuturgoon, Naeem Sheik Abdul, Taskeen Docrat, Hendrik G. Kruger, Thavendran Govender
Software Mentions: 1
Published: over 6 years ago

10.1042/AN20130027

Identification of Bax-Interacting Proteins in Oligodendrocyte Progenitors during Glutamate Excitotoxicity and Perinatal Hypoxia–Ischemia
Cited by: 26
Author(s): Sopio Simonishvili, Mohit Raja Jain, Hong Li, Steven W. Levison, Teresa L. Wood
Software Mentions: 1
Published: almost 13 years ago

10.1186/s40478-020-00911-y

Diversity in Aβ deposit morphology and secondary proteome insolubility across models of Alzheimer-type amyloidosis
Cited by: 9
Author(s): Guilian Xu, Susan Fromholt, Paramita Chakrabarty, Fanchao Zhu, Xuefei Liu, Michael C. Pace, Jin Koh, Todd E. Golde, Yona Levites, Jada Lewis, David R. Borchelt
Software Mentions: 1
Published: over 6 years ago

10.1186/s40478-019-0660-3

The APMAP interactome reveals new modulators of APP processing and beta-amyloid production that are altered in Alzheimer’s disease
Cited by: 20
Author(s): Hermeto Gerber, Sébastien Mosser, Benjamin Boury-Jamot, Michael Stumpe, Alessandra Piersigilli, Christine Goepfert, Jörn Dengjel, Urs Albrecht, Fulvio Magara, Patrick C. Fraering
Software Mentions: 1
Published: over 7 years ago

10.18632/aging.102441

Molecular basis of senescence transmitting in the population of human endometrial stromal cells
Cited by: 14
Author(s): Anastasiia Griukova, Pavel Deryabin, A. N. Shatrova, Elena Burova, Valeria Severino, Annarita Farina, Nikolay Nikolsky, Aleksandra Borodkina
Software Mentions: 1
Published: almost 7 years ago

10.1111/acel.12324

Modifications in stromal extracellular matrix of aged corneas can be induced by ultraviolet A irradiation
Cited by: 19
Author(s): Sébastien P. Gendron, Patrick J. Rochette
Software Mentions: 1
Published: over 11 years ago

10.1111/acel.13355

Peptide location fingerprinting reveals modification‐associated biomarker candidates of ageing in human tissue proteomes
Cited by: 6
Author(s): Matiss Ozols, Alexander Eckersley, Kieran T. Mellody, Venkatesh Mallikarjun, Stacey Warwood, Ronan O’Cualain, David Knight, Rod B. Watson, Christopher E.M. Griffiths, Joe Swift, Michael J. Sherratt
Software Mentions: 1
Published: over 5 years ago

10.1111/acel.12330

Aging‐related anatomical and biochemical changes in lymphatic collectors impair lymph transport, fluid homeostasis, and pathogen clearance
Cited by: 98
Author(s): Valerio Zolla, Irina Tsoy Nizamutdinova, Brian Scharf, Cristina C. Clement, Daisuke Maejima, Tony J. Akl, Takashi Nagai, Paola Luciani, Jean‐Christophe Leroux, Cornelia Halin, Sabriya Stukes, Sangeeta Tiwari, Arturo Casadevall, William R. Jacobs, David Entenberg, David C. Zawieja, John S. Condeelis, David R. Fooksman, Anatoliy A. Gashev, Laura Santambrogio
Software Mentions: 1
Published: over 11 years ago

10.14336/AD.2020.0908

Proteomic Profiling of Extracellular Vesicles Separated from Plasma of Former National Football League Players at Risk for Chronic Traumatic Encephalopathy
Cited by: 10
Author(s): Satoshi Muraoka, Annina M. DeLeo, Zijian Yang, Harutsugu Tatebe, Kayo Takamatsu-Yukawa, Seiko Ikezu, Takahiko Tokuda, David Issadore, Robert Stern, Tsuneya Ikezu
Software Mentions: 1
Published: over 5 years ago

10.1007/s00216-012-5767-3

De novo subtype and strain identification of botulinum neurotoxin type B through toxin proteomics
Cited by: 48
Author(s): Suzanne R. Kalb, Jakub Baudys, Jon C. Rees, Theresa J. Smith, Leonard A. Smith, Charles H. Helma, Karen K. Hill, Skadi Kull, Sebastian Kirchner, Martin B. Dorner, Brigitte G. Dorner, James L. Pirkle, John R. Barr
Software Mentions: 1
Published: over 14 years ago

10.1016/j.ab.2011.05.005

Mapping protein interactions by combining antibody affinity maturation and mass spectrometry
Cited by: 22
Author(s): Michael R. Dyson, Yong Zheng, Cunjie Zhang, Karen Colwill, Kritika Pershad, Brian K. Kay, Tony Pawson, John McCafferty
Software Mentions: 1
Published: almost 15 years ago

10.1590/1984-3143-AR2020-0552

Uterine infusion of conceptus fragments changes the protein profile from cyclic mares
Cited by: 0
Author(s): Cesar Augusto Camacho, Gabriel de Oliveira Santos, Jorge Emilio Caballeros, N. Cazales, Camilo José Ramirez, Pedro Marcus Pereira Vidigal, Humberto Josué de Oliveira Ramos, Edvaldo Barros, Rodrigo Costa Mattos
Software Mentions: 1
Published: over 6 years ago

10.3390/ani11071942

Insect Protein-Based Diet as Potential Risk of Allergy in Dogs
Cited by: 16
Author(s): Blanka Premrov Bajuk, Petra Zrimšek, Tina Kotnik, Adrijana Leonardi, Igor Križaj, Breda Jakovac-Strajn
Software Mentions: 1
Published: over 5 years ago

10.3390/ani11051338

Early Heat Exposure Effects on Proteomic Changes of the Broiler Liver under Acute Heat Stress
Cited by: 1
Author(s): Darae Kang, Kwan Seob Shim
Software Mentions: 1
Published: over 5 years ago

10.3390/antiox9090862

NHERF1 Loss Upregulates Enzymes of the Pentose Phosphate Pathway in Kidney Cortex
Cited by: 3
Author(s): Adrienne M. Bushau-Sprinkle, Michelle T. Barati, Kenneth B. Gagnon, Syed J. Khundmiri, Kathleen Kitterman, Bradford G. Hill, Amanda R. Sherwood, Michael L. Merchant, N. Shesh, Sudhir Srivastava, Barbara J. Clark, Leah J. Siskind, Michael E. Brier, Jessica Hata, Eleanor Lederer
Software Mentions: 1
Published: about 6 years ago

10.3390/antiox10081298

A Novel Immunoassay for Malondialdehyde-Conjugated Low-Density Lipoprotein Measures Dynamic Changes in the Blood of Patients Undergoing Coronary Artery Bypass Graft Surgery
Cited by: 2
Author(s): Samata S. Pandey, Adam Hartley, Mikhail Caga-Anan, Tareq Ammari, Ameer Khan, Bao Nguyen, Chiari Kojima, Jon R. Anderson, Steven Lynham, Michael Johns, Dorian O. Haskard, Ramzi Khamis
Software Mentions: 1
Published: about 5 years ago

10.3390/antiox8100488

Effect of Antioxidant Supplementation on the Sperm Proteome of Idiopathic Infertile Men
Cited by: 19
Author(s): Ashok Agarwal, Manesh Kumar Panner Selvam, Luna Samanta, Sarah C. Vij, Neel Parekh, Edmund Sabanegh, Nicholas N. Tadros, Mohamed Arafa, Rakesh Sharma
Software Mentions: 1
Published: almost 7 years ago

10.1007/s10495-018-1505-4

Cornification of nail keratinocytes requires autophagy for bulk degradation of intracellular proteins while sparing components of the cytoskeleton
Cited by: 18
Author(s): Karin Jaeger, Supawadee Sukseree, Shaomin Zhong, Brett S. Phinney, Veronika Mlitz, Maria Buchberger, Marie-Sophie Narzt, Флориан Грубер, Erwin Tschachler, Robert H. Rice, Leopold Eckhart
Software Mentions: 1
Published: almost 8 years ago

10.1128/AEM.01968-15

Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli
Cited by: 47
Author(s): Brant R. Johnson, Jeffrey P. Hymes, Rosemary Sanozky-Dawes, Emily DeCrescenzo Henriksen, Rodolphe Barrangou, Todd R. Klaenhammer
Software Mentions: 1
Published: over 10 years ago

10.1007/s00253-015-6778-8

Versatile vector suite for the extracytoplasmic production and purification of heterologous His-tagged proteins in Lactococcus lactis
Cited by: 13
Author(s): Jolanda Neef, Fin J. Milder, Dennis G. A. M. Koedijk, Marindy Klaassens, Erik Heezius, Jos A. G. van Strijp, Andreas Otto, Dörte Becher, Jan Maarten van Dijl, Girbe Buist
Software Mentions: 1
Published: about 11 years ago

10.1007/s00253-018-9073-7

Characterization of the caprolactam degradation pathway in Pseudomonas jessenii using mass spectrometry-based proteomics
Cited by: 23
Author(s): Marleen Otzen, Cyntia M. Palacio, Dick B. Janssen
Software Mentions: 1
Published: over 8 years ago

10.1161/ATVBAHA.118.312175

Glycoproteomic Analysis of the Aortic Extracellular Matrix in Marfan Patients
Cited by: 34
Author(s): Xiaoke Yin, Shaynah Wanga, Adam Fellows, Javier Barallobre-Barreiro, Ruifang Lu, Hongorzul Davaapil, Romy Franken, Marika Fava, Ferheen Baig, Philipp Skroblin, Qiuru Xing, David R. Koolbergen, Maarten Groenink, Aeilko H. Zwinderman, Ron Balm, Carlie J.M. de Vries, Barbara J.M. Mulder, Rosa Viner, Marjan Jahangiri, Dieter P. Reinhardt, Sanjay Sinha, Vivian de Waard, Manuel Mayr
Software Mentions: 1
Published: about 7 years ago

10.1186/ar3523

Proteomic analysis of saliva: a unique tool to distinguish primary Sjögren's syndrome from secondary Sjögren's syndrome and other sicca syndromes
Cited by: 97
Author(s): Chiara Baldini, Laura Giusti, Federica Ciregia, Ylenia Da Valle, Camillo Giacomelli, Elena Donadio, Francesca Sernissi, Laura Bazzichi, Gino Giannaccini, Stefano Bombardieri, Antonio Lucacchini
Software Mentions: 1
Published: over 15 years ago

10.1186/ar3802

Autoantibodies to transcription intermediary factor (TIF)1β associated with dermatomyositis
Cited by: 23
Author(s): Minoru Satoh, Jason Y F Chan, Steven J. Ross, Yang Li, Yoshioki Yamasaki, Hisakata Yamada, Mónica Vázquez-Del Mercado, Marcelo H. Petri, Luis J. Jara, Miguel Ángel Saavedra, Claudia Cruz‐Reyes, Eric S. Sobel, Westley H. Reeves, Angela Ceribelli, Edward K. L. Chan
Software Mentions: 1
Published: over 14 years ago

10.1186/s13075-017-1228-x

Identification of potential saliva and tear biomarkers in primary Sjögren’s syndrome, utilising the extraction of extracellular vesicles and proteomics analysis
Cited by: 149
Author(s): Lara A. Aqrawi, Hilde Kanli Galtung, Beate Vestad, Reidun Øvstebø, Bernd Thiede, Shermin Rusthen, Allan Young, Eduarda Guerreiro, Tor Paaske Utheim, Xiangjun Chen, Øygunn Aass Utheim, Øyvind Palm, Janicke Liaaen Jensen
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2091-13-17

The role of molecular chaperonins in warm ischemia and reperfusion injury in the steatotic liver: A proteomic study
Cited by: 7
Author(s): Venkataswarup Tiriveedhi, Kendra D. Conzen, Jane Liaw-Conlin, Gundumi A. Upadhya, James P. Malone, R. Reid Townsend, Robnet T. Kerns, Jianluo Jia, Krista Csontos, S. Ramachandran, T. Mohanakumar, Christopher Anderson, William C. Chapman
Software Mentions: 1
Published: over 14 years ago

10.1186/s12859-021-04237-x

On how to generalize species-specific conceptual schemes to generate a species-independent Conceptual Schema of the Genome
Cited by: 3
Author(s): Alberto García S., Juan Carlos Casamayor
Software Mentions: 1
Published: about 5 years ago

10.1186/1741-7007-10-5

Involvement of Plasmodium falciparum protein kinase CK2 in the chromatin assembly pathway
Cited by: 31
Author(s): Eeshita G Dastidar, Guillem Dayer, Zoe M Holland, Dominique Dorin‐Semblat, Aurélie Claës, Arnaud Chêne, Amit Sharma, Romain Hamelin, Marc Moniatte, José-Juan Lopez-Rubio, Artur Scherf, Christian Doerig
Software Mentions: 1
Published: over 14 years ago

10.1186/1472-6750-10-62

Engineering of N. benthamiana L. plants for production of N-acetylgalactosamine-glycosylated proteins - towards development of a plant-based platform for production of protein therapeutics with mucin type O-glycosylation
Cited by: 44
Author(s): Sasha M. Daskalova, Josiah E. Radder, Zbigniew A. Cichacz, Sam H Olsen, George Tsaprailis, Hugh S. Mason, Linda C. Lopez
Software Mentions: 1
Published: over 16 years ago

10.1186/s12885-016-2331-0

Expression of the cereblon binding protein argonaute 2 plays an important role for multiple myeloma cell growth and survival
Cited by: 33
Author(s): Qinqin Xu, Yue Xian Hou, Paul Langlais, Patrick Erickson, James Zhu, Chao Shi, Moulun Luo, Yuanxiao Zhu, Ye Xu, Lawrence J. Mandarino, Keith Stewart, Xiu Bao Chang
Software Mentions: 1
Published: over 10 years ago

10.1186/s12885-016-2211-7

Mitogen-activated protein kinase signaling causes malignant melanoma cells to differentially alter extracellular matrix biosynthesis to promote cell survival
Cited by: 13
Author(s): Anna Afasizheva, Alexus Devine, Heather Tillman, King Leung Fung, Wilfred D. Vieira, Benjamin H. Blehm, Yorihisa Kotobuki, Ben Busby, Emily I. Chen, Kandice Tanner
Software Mentions: 1
Published: over 10 years ago

10.1186/s12885-020-07111-w

Proteomics reveals a therapeutic vulnerability via the combined blockade of APE1 and autophagy in lung cancer A549 cells
Cited by: 11
Author(s): Shuting Pan, Jianguo Zhou, Fang Yang, Shu‐Feng Zhou, Tao Ren
Software Mentions: 1
Published: about 6 years ago

10.1186/s12885-015-1473-9

Quantitative proteomic analysis shows differentially expressed HSPB1 in glioblastoma as a discriminating short from long survival factor and NOVA1 as a differentiation factor between low-grade astrocytoma and oligodendroglioma
Cited by: 36
Author(s): Marcela Gimenez, Suely Kazue Nagahashi Marie, Sueli Mieko Oba-Shinjo, Miyuki Uno, Clarice Izumi, João Bosco Oliveira, José César Rosa
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2121-14-6

GxcC connects Rap and Rac signaling during Dictyostelium development
Cited by: 13
Author(s): Katarzyna Plak, Douwe M. Veltman, Fabrizia Fusetti, Jetze Beeksma, Fernando Rivero, Peter J.M. van Haastert, Arjan Kortholt
Software Mentions: 1
Published: over 13 years ago

10.1186/1472-6882-12-S1-P22

P01.22. Identification of a peptide biomarker from bromelain, an extract of ananas comosus merr, using LC-SRM/MS
Cited by: 0
Author(s): Eric R. Secor, Steven M. Szczepanek, Linda Guernsey, Lawrence K. Silbart, Roger S. Thrall, Dong Qi Han
Software Mentions: 1
Published: over 14 years ago

10.1186/s12862-017-0978-z

The skeletal proteome of the sea star Patiria miniata and evolution of biomineralization in echinoderms
Cited by: 19
Author(s): Rachel L. Flores, Brian T. Livingston
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2148-9-243

The genome sequence of the protostome Daphnia pulex encodes respective orthologues of a neurotrophin, a Trk and a p75NTR: Evolution of neurotrophin signaling components and related proteins in the bilateria
Cited by: 19
Author(s): Karen Wilson
Software Mentions: 1
Published: over 17 years ago

10.1186/s12862-017-0927-x

Duplication and concerted evolution of MiSp-encoding genes underlie the material properties of minor ampullate silks of cobweb weaving spiders
Cited by: 30
Author(s): Jannelle Vienneau-Hathaway, Elizabeth R. Brassfield, A. Kelly Lane, Matthew A. Collin, Sandra M. Correa-Garhwal, Thomas H. Clarke, Evelyn E. Schwager, Jessica E. Garb, Cheryl Y. Hayashi, Nadia A. Ayoub
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-230X-13-64

Comparative proteomics study on liver mitochondria of primary biliary cirrhosis mouse model
Cited by: 5
Author(s): Guang Song, Chao Hu, Huishan Zhu, Xi Li, Liying Zhao, Renwu Zhou, Xuan Zhang, Fengchun Zhang, Lin Wu, Yongzhe Li
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-017-3853-9

Systematic discovery of novel eukaryotic transcriptional regulators using sequence homology independent prediction
Cited by: 11
Author(s): Flavia Bossi, Jue Fan, Jun Xiao, Lilyana Chandra, Max W. Shen, Yanniv Dorone, Doris Wagner, Seung Y. Rhee
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-10-208

Genome-wide identification and characterization of cytochrome P450 monooxygenase genes in the ciliate Tetrahymena thermophila
Cited by: 31
Author(s): Chengjie Fu, Jie Xiong, Wei Miao
Software Mentions: 1
Published: over 17 years ago

10.1186/1471-2164-11-644

From an electrophoretic mobility shift assay to isolated transcription factors: a fast genomic-proteomic approach
Cited by: 17
Author(s): Astrid R. Mach-Aigner, Karin Grosstessner-Hain, Márcio José Poças-Fonseca, Karl Mechtler, Robert L. Mach
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-017-3655-0

Core-genome scaffold comparison reveals the prevalence that inversion events are associated with pairs of inverted repeats
Cited by: 8
Author(s): Dan Wang, Shuai Cheng Li, Fei Guo, Kang Ning, Lusheng Wang
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-017-3637-2

Positional bias in variant calls against draft reference assemblies
Cited by: 8
Author(s): Roman Briskine, Kentaro Shimizu
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-019-5890-z

Differentially expressed mRNAs, proteins and miRNAs associated to energy metabolism in skeletal muscle of beef cattle identified for low and high residual feed intake
Cited by: 21
Author(s): Elisa B. Carvalho, Mateus Pies Gionbelli, Rafael Torres de Souza Rodrigues, Sarah Figueiredo Martins Bonilha, C. J. Newbold, Simone Eliza Facioni Guimarães, Walmir Silva, Lucas Lima Verardo, Fabyano F. Silva, Edênio Detmann, Márcio de Souza Duarte
Software Mentions: 1
Published: over 7 years ago

10.1186/1471-2164-15-280

Proteomic comparison of Ralstonia solanacearum strains reveals temperature dependent virulence factors
Cited by: 28
Author(s): Ana Maria Bocsanczy, U. Achenbach, Arianna Mangravita-Novo, Marjorie Chow, David J. Norman
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-017-4403-1

Insights into teleost sex determination from the Seriola dorsalis genome assembly
Cited by: 36
Author(s): Catherine Purcell, Arun S. Seetharam, Owyn E. Snodgrass, Sofía Ortega‐García, John R. Hyde, Andrew J. Severin
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2164-13-614

Anopheles salivary gland proteomes from major malaria vectors
Cited by: 23
Author(s): Albin Fontaine, Thierry Fusaı̈, Sébastien Briolant, Sylvain Buffet, Claude Villard, Emilie Baudelet, Matthieu Pophillat, Samuel Granjeaud, Christophe Rogier, Lionel Almeras
Software Mentions: 1
Published: almost 14 years ago

10.1186/1471-2164-14-764

The broccoli (Brassica oleracea) phloem tissue proteome
Cited by: 19
Author(s): James A. Anstead, Steven D. Hartson, Gary A. Thompson
Software Mentions: 1
Published: over 13 years ago

10.1186/s12864-020-07299-y

Shotgun proteomics of peach fruit reveals major metabolic pathways associated to ripening
Cited by: 12
Author(s): Ricardo Nilo-Poyanco, Carol Moraga, Gianfranco Benedetto, Ariel Orellana, Aparecida Marques de Almeida
Software Mentions: 1
Published: over 5 years ago

10.1186/s12864-016-3048-9

High throughput techniques to reveal the molecular physiology and evolution of digestion in spiders
Cited by: 24
Author(s): Felipe J. Fuzita, Martijn W. H. Pinkse, José Salvatori Patané, Peter Verhaert, Adriana Rios Lopes
Software Mentions: 1
Published: about 10 years ago

10.1186/1471-2164-15-839

iTRAQ-proteomics and bioinformatics analyses of mammary tissue from cows with clinical mastitis due to natural infection with Staphylococci aureus
Cited by: 54
Author(s): Jinming Huang, Guanghong Luo, Zijing Zhang, Xiuge Wang, Zhihua Ju, Chao Qi, Yan Zhang, Changfa Wang, Rongling Li, Jianbin Li, Wanzhong Yin, Yinxue Xu, Sonia J. Moisá, Juan J. Loor, Jun Zhong
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-019-5836-5

Analysis of the equine “cumulome” reveals major metabolic aberrations after maturation in vitro
Cited by: 19
Author(s): Jasmin Walter, Fabian Huwiler, Claudia Fortes, Jonas Grossmann, Bernd Roschitzki, Jingyu Hu, Hanspeter Naegeli, Endre Laczkó, Ulrich Bleul
Software Mentions: 1
Published: about 7 years ago

10.1186/1471-2164-15-366

Dramatic expansion of the black widow toxin arsenal uncovered by multi-tissue transcriptomics and venom proteomics
Cited by: 74
Author(s): Robert A. Haney, Nadia A. Ayoub, Thomas H. Clarke, Cheryl Y. Hayashi, Jessica E. Garb
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-020-07066-z

Proteome of larval metamorphosis induced by epinephrine in the Fujian oyster Crassostrea angulata
Cited by: 11
Author(s): Guilan Di, Xiaohuo Xiao, Ming Him Tong, Xinhua Chen, Li Li, Meng Huang, Long Zhou, Caihuan Ke
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12864-021-07858-x

Selection of functional EPHB2 genotypes from ENU mutated grass carp treated with GCRV
Cited by: 1
Author(s): Meher un Nissa, Zhuangzhuang Jiang, Guo‐Dong Zheng, Shu‐Ming Zou
Software Mentions: 1
Published: about 5 years ago

10.1186/1471-2164-12-194

Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes
Cited by: 14
Author(s): Niina Haiminen, F. Alex Feltus, Laxmi Parida
Software Mentions: 1
Published: over 15 years ago

10.1186/s12864-016-3472-x

The extracellular proteome of two Bifidobacterium species reveals different adaptation strategies to low iron conditions
Cited by: 10
Author(s): Pamela Vazquez-Gutierrez, Marc J. A. Stevens, Peter Gehrig, Simon Barkow-Oesterreicher, Christophe Lacroix, Christophe Chassard
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2164-15-1058

Patterns of gene expression associated with recovery and injury in heat-stressed rats
Cited by: 29
Author(s): Jonathan D. Stallings, Danielle L. Ippolito, V. Rakesh, Christine E. Baer, William E. Dennis, Bryan G. Helwig, David A. Jackson, Lisa R. Leon, John A. Lewis, Jaques Reifman
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-11-685

Perturbation of the yeast N-acetyltransferase NatB induces elevation of protein phosphorylation levels
Cited by: 77
Author(s): Andreas O. Helbig, Sara Rosati, Pim W W M Pijnappel, Bas van Breukelen, Marc Timmers, Shabaz Mohammed, Monique Slijper, Albert J. R. Heck
Software Mentions: 1
Published: almost 16 years ago

10.1186/s12864-016-2456-1

Translatomics combined with transcriptomics and proteomics reveals novel functional, recently evolved orphan genes in Escherichia coli O157:H7 (EHEC)
Cited by: 31
Author(s): Klaus Neuhaus, Richard Landstorfer, Lea Fellner, Svenja Simon, Andrea Schafferhans, Tatyana Goldberg, Harald Marx, Olga N. Ozoline, Burkhard Rost, Bernhard Küster, Daniel A. Keim, Siegfried Scherer
Software Mentions: 1
Published: over 10 years ago

10.1186/s12865-016-0154-z

Cryptic protein-protein interaction motifs in the cytoplasmic domain of MHCI proteins
Cited by: 4
Author(s): Karla K. Frietze, Adlai Pappy, Jack W. Melson, Emily E. O’Driscoll, Carolyn M. Tyler, David H. Perlman, Lisa M. Boulanger
Software Mentions: 1
Published: about 10 years ago

10.1186/s12865-017-0221-0

Mercury alters endogenous phosphorylation profiles of SYK in murine B cells
Cited by: 6
Author(s): Joseph A. Caruso, Nicholas J. Carruthers, Namhee Shin, Randall F. Gill, Paul M. Stemmer, Allen J. Rosenspire
Software Mentions: 1
Published: about 9 years ago

10.1186/s12916-018-1136-1

An exploratory study examining how nano-liquid chromatography–mass spectrometry and phosphoproteomics can differentiate patients with advanced fibrosis and higher percentage collagen in non-alcoholic fatty liver disease
Cited by: 7
Author(s): Zobair M. Younossi, Azza Karrar, Mariaelena Pierobon, Aybike Birerdinc, Maria Stepanova, Dinan Abdelatif, Zahra Younoszai, Thomas L. Jeffers, Sean Felix, Kianoush Jeiran, Alex Hodge, Weidong Zhou, Fanny Monge, Lakshmi Alaparthi, Vikas Chandhoke, Zachary Goodman, Emanuel F. Petricoin
Software Mentions: 1
Published: about 8 years ago

10.1186/s12920-019-0576-6

Population structure and transmission modes of indigenous typhoid in Taiwan
Cited by: 5
Author(s): Kaiyu Wang, De-Jen Lee, Shian-Sen Shie, Chih-Jung Chen
Software Mentions: 1
Published: about 7 years ago

10.1186/s12920-018-0382-6

Differentially expressed proteins in positive versus negative HNSCC lymph nodes
Cited by: 6
Author(s): Alessandra Vidotto, Giovana Mussi Polachini, Marina de Paula-Silva, Sônia Maria Oliani, Tiago Henrique, Rossana Verónica Mendoza López, Patrı́cia Maluf Cury, Fábio Daumas Nunes, J.F Gois-filho, Marcos Brasilino de Carvalho, Andréia Machado Leopoldino, Eloíza H. Tajara
Software Mentions: 1
Published: about 8 years ago

10.1186/s12866-020-02065-2

Differential production and secretion of potentially toxigenic extracellular proteins from hypervirulent Aeromonas hydrophila under biofilm and planktonic culture
Cited by: 13
Author(s): Priscilla C. Barger, Mark R. Liles, Benjamin H. Beck, Joseph C. Newton
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2180-11-245

Biofilm and planktonic pneumococci demonstrate disparate immunoreactivity to human convalescent sera
Cited by: 28
Author(s): Carlos J. Sánchez, Brady J. Hurtgen, Anel Lizcano, Pooja Shivshankar, Garry T. Cole, Carlos J. Orihuela
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2180-14-70

The CJIE1 prophage of Campylobacter jejuni affects protein expression in growth media with and without bile salts
Cited by: 16
Author(s): Clifford G. Clark, Patrick Chong, Stuart McCorrister, Philippe Simon, Matthew Walker, David M. Lee, Kimberly Nguy, Keding Cheng, Matthew W. Gilmour, Garrett Westmacott
Software Mentions: 1
Published: over 12 years ago

10.1186/s12866-020-01964-8

The role of the msaABCR operon in implant-associated chronic osteomyelitis in Staphylococcus aureus USA300 LAC
Cited by: 9
Author(s): Gyan S. Sahukhal, Michelle Tucci, Hamed Benghuzzi, Gerri Wilson, Mohamed O. Elasri
Software Mentions: 1
Published: almost 6 years ago

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