pypi: Scaffold | Projects | Ecosyste.ms: Papers

10.1038/s41421-018-0071-9

The metacaspase Yca1 maintains proteostasis through multiple interactions with the ubiquitin system
Cited by: 14
Author(s): Amit Shrestha, Steve Brunette, William L. Stanford, Lynn A. Megeney
Software Mentions: 1
Published: almost 7 years ago

10.1111/j.1462-5822.2011.01582.x

Activation of a PAK-MEK signalling pathway in malaria parasite-infected erythrocytes
Cited by: 66
Author(s): Audrey Sicard, Jean-Phillipe Semblat, Caroline Doerig, Romain Hamelin, Marc Moniatte, Dominique Dorin‐Semblat, Julie A. Spicer, Anubhav Srivastava, Silke Retzlaff, Volker Heussler, Andrew P. Waters, Christian Doerig
Software Mentions: 1
Published: over 14 years ago

10.1111/cmi.13027

<scp>Eimeria tenellaROP</scp>kinase<scp>EtROP1</scp>induces G0/G1 cell cycle arrest and inhibits host cell apoptosis
Cited by: 21
Author(s): Mamadou Diallo, Alix Sausset, Audrey Gnahoui‐David, Adeline Ribeiro E Silva, Aurélien Brionne, Yves Le Vern, Françoise Bussière, Julie Tottey, Sonia Lacroix‐Lamandé, Fabrice Laurent, Anne Silvestre
Software Mentions: 1
Published: over 6 years ago

10.1007/s00018-019-03267-2

Toxoplasma gondii ROP16 kinase silences the cyclin B1 gene promoter by hijacking host cell UHRF1-dependent epigenetic pathways
Cited by: 12
Author(s): Marcela Sabou, Cécile Doderer-Lang, Caroline Leyer, Ana Konjic, Sophie Kubina, Sarah Lennon, Olivier Rohr, Stéphane Viville, Sarah Cianférani, Ermanno Candolfi, Alexander W. Pfaff, Julie Brunet
Software Mentions: 1
Published: about 6 years ago

10.33594/000000164

A Novel Probe for Spliceosomal Proteins that Induces Autophagy and Death of Melanoma Cells Reveals New Targets for Melanoma Drug Discovery
Cited by: 12
Author(s): Manikandan Palrasu, Anna M. Knapinska, Juan Diez, Lyndsay Smith, Travis LaVoi, Marc A. Giulianotti, Richard A. Houghten, Gregg B. Fields, Dmitriy Minond
Software Mentions: 1
Published: about 6 years ago

10.1111/cpr.12853

The up‐regulation of NDRG1 by HIF counteracts the cancer‐promoting effect of HIF in VHL‐deficient clear cell renal cell carcinoma
Cited by: 10
Author(s): Zhengyan Zhang, Shilong Zhang, Hui‐Ling Chen, Yuqin Mao, Zhan‐Ming Li, Chao‐Yue Kong, Bing Han, Jin Zhang, Yonghui Chen, Wei Xue, Wei Zhai, Li‐Shun Wang
Software Mentions: 1
Published: over 5 years ago

10.1016/j.cellsig.2020.109632

Characterisation of the biochemical and cellular roles of native and pathogenic amelogenesis imperfecta mutants of FAM83H
Cited by: 5
Author(s): Theresa Tachie-Menson, Ana Gázquez-Gutiérrez, Luke J. Fulcher, Thomas Macartney, Nicola T. Wood, Joby Varghese, Robert Gourlay, Renata Soares, Gopal P. Sapkota
Software Mentions: 1
Published: over 5 years ago

10.3390/cells10081854

Understanding Cervical Cancer through Proteomics
Cited by: 22
Author(s): Fátima Martínez-Rodríguez, Jared E. Limones-González, Brenda Mendoza-Almanza, Edgar Esparza‐Ibarra, Perla Gallegos-Flores, Jorge Luis Ayala-Luján, Susana Godina-González, Eva Salinas, Gretel Mendoza‐Almanza
Software Mentions: 1
Published: over 4 years ago

10.3390/cells10082120

Oleuropein Activates Neonatal Neocortical Proteasomes, but Proteasome Gene Targeting by AAV9 Is Variable in a Clinically Relevant Piglet Model of Brain Hypoxia-Ischemia and Hypothermia
Cited by: 2
Author(s): Nagat El Demerdash, May Chen, Caitlin E. O’Brien, Shawn Adams, Ewa Kulikowicz, Lee J. Martin, Jennifer K. Lee
Software Mentions: 1
Published: over 4 years ago

10.3390/cells8101115

CPT1A Supports Castration-Resistant Prostate Cancer in Androgen-Deprived Conditions
Cited by: 22
Author(s): Molishree Joshi, Gergana E Stoykova, Maren Salzmann-Sullivan, Monika Dzieciątkowska, Lauren Liebman, Gagan Deep, Isabel R. Schlaepfer
Software Mentions: 1
Published: about 6 years ago

10.3390/cells9010210

Hippocampal Neurogenesis Is Enhanced in Adult Tau Deficient Mice
Cited by: 17
Author(s): Marangelie Criado‐Marrero, Jonathan J. Sabbagh, Margaret R. Jones, Dale Chaput, Chad A. Dickey, Laura J. Blair
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells9071672

MRIP Regulates the Myosin IIA Activity and DDR1 Function to Enable Collagen Tractional Remodeling
Cited by: 7
Author(s): Nuno M. Coelho, Andrew Wang, Petar Petrovic, Yongqiang Wang, Lionel Wilson, Christopher A. McCulloch
Software Mentions: 1
Published: over 5 years ago

10.3390/cells9010153

Network of Interactions between ZIKA Virus Non-Structural Proteins and Human Host Proteins
Cited by: 19
Author(s): Volha A. Golubeva, Thales C. Nepomuceno, Giuliana De Gregoriis, Rafael D. Mesquita, Xueli Li, Sweta Dash, Patrícia P. Garcez, Guilherme Suarez‐Kurtz, Victoria Izumi, John M. Koomen, Marcelo A. Carvalho, Alvaro N.A. Monteiro
Software Mentions: 1
Published: almost 6 years ago

10.1093/texcom/tgaa096

Behavioral Deficits in Mice with Postnatal Disruption of Ndel1 in Forebrain Excitatory Neurons: Implications for Epilepsy and Neuropsychiatric Disorders
Cited by: 4
Author(s): Cezar Gavrilovici, Yulan Jiang, Ivana Kiroski, Toni-Lee Sterley, Milène Vandal, Jaideep S. Bains, Sang Ki Park, Jong M. Rho, G. Campbell Teskey, Minh Dang Nguyen
Software Mentions: 1
Published: almost 5 years ago

10.1186/s41016-020-00190-5

Urinary biomarker discovery in gliomas using mass spectrometry-based clinical proteomics
Cited by: 18
Author(s): Jianhuang Wu, Jun Zhang, Jing Wei, Yuanli Zhao, Youhe Gao
Software Mentions: 1
Published: over 5 years ago

10.1186/2046-2530-3-2

Reduction of meckelin leads to general loss of cilia, ciliary microtubule misalignment and distorted cell surface organization
Cited by: 18
Author(s): Tyler Picariello, Megan S. Valentine, Junji Yano, Judith Van Houten
Software Mentions: 1
Published: almost 12 years ago

10.1161/CIRCULATIONAHA.116.023381

Extracellular Matrix Proteomics Reveals Interplay of Aggrecan and Aggrecanases in Vascular Remodeling of Stented Coronary Arteries
Cited by: 70
Author(s): Gonca Suna, Wojciech Wojakowski, Magnus Lynch, Javier Barallobre-Barreiro, Xiaoke Yin, Ursula Mayr, Ferheen Baig, Ruifang Lu, Marika Fava, Robert Hayward, Chris Molenaar, Stephen J. White, Tomasz Roleder, Krzysztof Milewski, Paweł Gąsior, Piotr P. Buszman, Paweł Buszman, Marjan Jahangiri, Catherine M. Shanahan, Jonathan Hill, Manuel Mayr
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12014-015-9091-8

A proteomic profile of synoviocyte lesions microdissected from formalin-fixed paraffin-embedded synovial tissues of rheumatoid arthritis
Cited by: 16
Author(s): Junji Hayashi, Makoto Kihara, Harubumi Kato, Toshihide Nishimura
Software Mentions: 1
Published: over 10 years ago

10.1186/s12014-015-9085-6

Comparative proteomic analysis of hypertrophic chondrocytes in osteoarthritis
Cited by: 47
Author(s): Konstantinos C. Tsolis, Ekaterini S. Bei, Ioanna V. Papathanasiou, F. Kostopoulou, Vasiliki Gkretsi, K. Kalantzaki, Konstantinos N. Malizos, Michalis Zervakis, Aspasia Tsezou, Anastassios Economou
Software Mentions: 1
Published: over 10 years ago

10.1186/1559-0275-9-2

Characterization of the seminal plasma proteome in men with prostatitis by mass spectrometry
Cited by: 33
Author(s): Daniel J. Kagedan, Irene Lecker, Ihor Batruch, Christopher Smith, Ilia Kaploun, Kirk Lo, Ethan Grober, Eleftherios P. Diamandis, Keith Jarvi
Software Mentions: 1
Published: almost 14 years ago

10.1186/1559-0275-11-30

A feasibility study to identify proteins in the residual Pap test fluid of women with normal cytology by mass spectrometry-based proteomics
Cited by: 14
Author(s): Kristin L.M. Boylan, Somaieh Afiuni-Zadeh, Melissa A. Geller, Kayla Hickey, Timothy J. Griffin, Stefan E. Pambuccian, Amy P.N. Skubitz
Software Mentions: 1
Published: over 11 years ago

10.1186/s12014-017-9154-0

The serum protein responses to treatment with Xiaoke Pill and Glibenclamide in type 2 diabetes patients
Cited by: 6
Author(s): Xiuying Zhang, Hui Sun, Sanjoy K. Paul, Quanhui Wang, Xiaomin Lou, Guixue Hou, Bo Wen, Linong Ji, Siqi Liu
Software Mentions: 1
Published: over 8 years ago

10.1186/1559-0275-11-19

Disrupting KATP channels diminishes the estrogen-mediated protection in female mutant mice during ischemia-reperfusion
Cited by: 20
Author(s): Jianjiong Gao, Dong Xu, Grzegorz Sabat, Héctor H. Valdivia, Wei Xu, Nian‐Qing Shi
Software Mentions: 1
Published: over 11 years ago

10.1186/s12014-020-09309-3

Evaluation of the potential of Pap test fluid and cervical swabs to serve as clinical diagnostic biospecimens for the detection of ovarian cancer by mass spectrometry-based proteomics
Cited by: 7
Author(s): Kristin L.M. Boylan, Somaieh Afiuni-Zadeh, Melissa A. Geller, Peter A. Argenta, Timothy J. Griffin, Amy P.N. Skubitz
Software Mentions: 1
Published: almost 5 years ago

10.1186/1559-0275-12-4

Impact of precise modulation of reactive oxygen species levels on spermatozoa proteins in infertile men
Cited by: 40
Author(s): Ahmet Ayaz, Ashok Agarwal, Rakesh Sharma, Mohamed Arafa, Haitham Elbardisi, Zhihong Cui
Software Mentions: 1
Published: almost 11 years ago

10.1186/1559-0275-11-40

Proteomic analysis of human placental syncytiotrophoblast microvesicles in preeclampsia
Cited by: 75
Author(s): Sonia Baig, Narasimhan Kothandaraman, Jayapal Manikandan, Rong Li, Kim Huey Ee, Jeffrey Hill, Chin Wee Lai, Wan Yu Tan, Felicia Yeoh, Anita Sugam Kale, Lin Su, Arijit Biswas, S Vasoo, Mahesh Choolani
Software Mentions: 1
Published: about 11 years ago

10.1186/1559-0275-10-1

Proteomic analysis of ERK1/2-mediated human sickle red blood cell membrane protein phosphorylation
Cited by: 15
Author(s): Erik J. Soderblom, J. Will Thompson, Eric M. Schwartz, Edward Chiou, Laura G. Dubois, M. Arthur Moseley, Rahima Zennadi
Software Mentions: 1
Published: almost 13 years ago

10.1186/1559-0275-11-13

Deciphering the ovarian cancer ascites fluid peptidome
Cited by: 34
Author(s): Anand K. Bery, Felix Leung, Christopher R. Smith, Eleftherios P. Diamandis, Vathany Kulasingam
Software Mentions: 1
Published: over 11 years ago

10.1186/s12014-015-9094-5

Comparative proteomic network signatures in seminal plasma of infertile men as a function of reactive oxygen species
Cited by: 44
Author(s): Ashok Agarwal, Ahmet Ayaz, Luna Samanta, Rakesh Sharma, Mourad Assidi, Adel M. Abuzenadah, Edmund Sabanegh
Software Mentions: 1
Published: over 10 years ago

10.1186/1559-0275-8-13

Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery
Cited by: 13
Author(s): Joel A. Kooren, Nelson L. Rhodus, Chuanning Tang, Pratik Jagtap, Bryan J Horrigan, Timothy J. Griffin
Software Mentions: 1
Published: about 14 years ago

10.1186/s12014-020-09308-4

Identification of differentially expressed proteins and clinicopathological significance of HMGB2 in cervical cancer
Cited by: 2
Author(s): Xiao Han, Siyi Zhong, Pengnan Zhang, Yanmei Liu, Sangsang Shi, Congquan Wu, Shujun Gao
Software Mentions: 1
Published: almost 5 years ago

10.1186/1559-0275-10-5

Semiquantitative proteomic analysis of human hippocampal tissues from Alzheimer’s disease and age-matched control brains
Cited by: 49
Author(s): Ilijana Begcevic, Hari Kosanam, Eduardo Martínez‐Morillo, Apostolos Dimitromanolakis, Phedias Diamandis, Uroš Kuzmanov, Lili‐Naz Hazrati, Eleftherios P. Diamandis
Software Mentions: 1
Published: over 12 years ago

10.1038/s42003-021-02258-z

Macropinocytosis requires Gal-3 in a subset of patient-derived glioblastoma stem cells
Cited by: 12
Author(s): Laetitia Seguin, Soline Odouard, Francesca Corlazzoli, S. Haddad, Laurine Moindrot, Marta Calvo Tardón, Mayra Yebra, Alexey Koval, Eliana Marinari, Viviane Bes, Alexandre Guérin, Mathilde Allard, Sten Ilmjärv, Vladimir L. Katanaev, Paul R Walker, Karl Heinz Krause, Valérie Dutoit, Jann N. Sarkaria, Pierre Yves Dietrich, Érika Cosset
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-021-02302-y

Reduced C9orf72 function leads to defective synaptic vesicle release and neuromuscular dysfunction in zebrafish
Cited by: 24
Author(s): Zoé Butti, Yingzhou Edward Pan, Jean Giacomotto, Shunmoogum A. Patten
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-021-02054-9

ARP-T1-associated Bazex–Dupré–Christol syndrome is an inherited basal cell cancer with ciliary defects characteristic of ciliopathies
Cited by: 6
Author(s): Hyun‐Sook Park, Eirini Papanastasi, Gabriela Blanchard, Elena Chiticariu, Daniel Bachmann, Giuseppe Battaglia, Fanny Morice‐Picard, P. Vabres, Asma Smahi, Marcel Huber, Christine Pich-Bavastro, Daniel Hohl
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-020-1102-2

ATM-associated signalling triggers the unfolded protein response and cell death in response to stress
Cited by: 17
Author(s): Yuka Hotokezaka, Ikuo Katayama, Takashi Nakamura
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-02066-5

CellectSeq: In silico discovery of antibodies targeting integral membrane proteins combining in situ selections and next-generation sequencing
Cited by: 6
Author(s): Abdellali Kelil, Eugenio Gallo, Sunandan Banerjee, Jarrett Adams, Sachdev S. Sidhu
Software Mentions: 1
Published: over 4 years ago

10.1038/s42003-019-0313-x

Quantitative intrinsic auto-cathodoluminescence can resolve spectral signatures of tissue-isolated collagen extracellular matrix
Cited by: 7
Author(s): Marcin Zieliński, Elif Vardar, Ganesh Vythilingam, Eva Engelhardt, Jeffrey A. Hubbell, Peter Frey, Hans M. Larsson
Software Mentions: 1
Published: almost 7 years ago

10.1038/s42003-019-0598-9

Alpha-synuclein stepwise aggregation reveals features of an early onset mutation in Parkinson’s disease
Cited by: 79
Author(s): Guilherme A. P. de Oliveira, Jerson L. Silva
Software Mentions: 1
Published: about 6 years ago

10.1038/s42003-020-0851-2

Sjögren syndrome/scleroderma autoantigen 1 is a direct Tankyrase binding partner in cancer cells
Cited by: 5
Author(s): Harmonie Perdreau‐Dahl, Cinzia Progida, Stefan J Barfeld, Hanne Guldsten, Bernd Thiede, Magnus Ø. Arntzen, Oddmund Bakke, Ian G. Mills, Stefan Krauß, J. Preben Morth
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-020-1092-0

STK11 (LKB1) missense somatic mutant isoforms promote tumor growth, motility and inflammation
Cited by: 17
Author(s): Paula Granado-Martínez, Sara García-Ortega, Elena González‐Sánchez, Kimberley McGrail, Rafael Selgas, Judit Grueso, R. Sánchez Gil, Neia Naldaiz-Gastesi, Ana Carolina Rhodes, Javier Hernández‐Losa, Berta Ferrer, Françesc Canals, Josep Villanueva, Olga Méndez, Sergio Espinosa-Gil, José M. Lizcano, Eva Muñoz‐Couselo, Vicenç García-Patos, Juán A. Recio
Software Mentions: 1
Published: over 5 years ago

10.1038/s42003-021-01882-z

Secreted midbody remnants are a class of extracellular vesicles molecularly distinct from exosomes and microparticles
Cited by: 34
Author(s): Alin Rai, David W. Greening, Rong Xu, Maoshan Chen, Wittaya Suwakulsiri, Richard J. Simpson
Software Mentions: 1
Published: over 4 years ago

10.1016/j.dib.2016.04.051

Proteome dataset of pre-ovulatory follicular fluids from less fertile dairy cows
Cited by: 3
Author(s): Maya Zachut, Pankaj Sood, L. Livshitz, Gitit Kra, Yishai Levin, U. Moallem
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2016.03.053

Development of data for the identification and characterization of proteins found in Rhodnius prolixus, Triatoma lecticularia and Panstrongylus herreri
Cited by: 4
Author(s): Carlos Emmanuel Montandon, Edvaldo Barros, Pedro Marcus Pereira Vidigal, Maria Tays Mendes, Ana Carolina Borella Marfil Anhê, Humberto Josué de Oliveira Ramos, Carlo José Freire Oliveira, Cláudio Lísias Mafra de Siqueira
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2014.08.008

Data for chicken semen proteome and label free quantitative analyses displaying sperm quality biomarkers
Cited by: 10
Author(s): Valérie Labas, Isabelle Grasseau, Karine Cahier, Audrey Gargaros, Grégoire Harichaux, Ana-Paula Teixeira-Gomes, Sabine Alves, M. Bourin, Nadine Gérard, Élisabeth Blesbois
Software Mentions: 1
Published: about 11 years ago

10.1016/j.dib.2018.04.018

Peptidomics dataset: Blood plasma and serum samples of healthy donors fractionated on a set of chromatography sorbents
Cited by: 13
Author(s): Georgij Arapidi, Maria Osetrova, O.M. Ivanova, Ivan Butenko, Tatjana Maksimovna Saveleva, Polina V. Pavlovich, Nikolay Anikanov, В. Т. Иванов, Vadim M. Govorun
Software Mentions: 1
Published: over 7 years ago

10.1016/j.dib.2020.105606

Dataset on interactors of the Arabidopsis thaliana Plant Natriuretic Peptide (AtPNP-A) determined by mass spectrometry
Cited by: 4
Author(s): Ilona Turek, Helen Ruth Irving, Chris Gehring
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2016.02.065

Comparison of proteomic datasets from hypertrophic chondrocytes in response to ER stress
Cited by: 1
Author(s): Mateusz Kudelko, Rakesh Sharma, Kathryn S.E. Cheah, Danny Chan
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2015.08.015

Assessment of current mass spectrometric workflows for the quantification of low abundant proteins and phosphorylation sites
Cited by: 7
Author(s): Manuel Bauer, Erik Ahrné, Anna P. Baron, Timo Glatter, Luca Fava, Anna Santamaría, Erich A. Nigg, Alexander Schmidt
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2016.02.018

Data in support of the identification of neuronal and astrocyte proteins interacting with extracellularly applied oligomeric and fibrillar α-synuclein assemblies by mass spectrometry
Cited by: 6
Author(s): Amulya Nidhi Shrivastava, Virginie Redeker, Nicolas Fritz, Laura Pieri, Leandro G. Almeida, Maria Spolidoro, Thomas Liebmann, Luc Bousset, Marianne Renner, Clément Léna, Anita Aperia, Ronald Melki, Antoine Triller
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2019.103953

Protein profile of different cellular fractions from Mycobacterium tuberculosis strains after exposure to isoniazid
Cited by: 2
Author(s): Luisa María Nieto Ramirez, Carolina Mehaffy, Karen M. Dobos
Software Mentions: 1
Published: over 6 years ago

10.1016/j.dib.2016.01.038

Comparative proteomics dataset of skimmed milk samples from Holstein and Jersey dairy cattle
Cited by: 1
Author(s): R. Tacoma, Julia Fields, David B. Ebenstein, Ying‐Wai Lam, S.L. Greenwood
Software Mentions: 1
Published: almost 10 years ago

10.1016/j.dib.2016.03.056

Dataset of integrin-linked kinase protein: Protein interactions in cardiomyocytes identified by mass spectrometry
Cited by: 0
Author(s): Alexandra Traister, Ming-Liang Lu, John G. Coles, Jason T. Maynes
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2018.12.056

Peptidome profiling dataset of ovarian cancer and non-cancer proximal fluids: Ascites and blood sera
Cited by: 8
Author(s): Victoria О. Shender, Georgij Arapidi, Ivan Butenko, Nikolay Anikanov, O.M. Ivanova, Vadim M. Govorun
Software Mentions: 1
Published: almost 7 years ago

10.1016/j.dib.2020.105704

Exploration of human cerebrospinal fluid: A large proteome dataset revealed by trapped ion mobility time-of-flight mass spectrometry
Cited by: 15
Author(s): Charlotte Macron, Régis Lavigne, Antonio Núñez Galindo, Michael Affolter, Charles Pineau, Loı̈c Dayon
Software Mentions: 1
Published: over 5 years ago

10.1016/j.dib.2014.10.005

Data supporting the identification of anti-metastatic drug and natural compound targets in isogenic colorectal cancer cells
Cited by: 3
Author(s): Jingyun Lee, Kimberly Q. McKinney, Antonis J. Pavlopoulos, Jeong-Hill Park, Sunil Hwang
Software Mentions: 1
Published: about 11 years ago

10.1016/j.dib.2020.106675

Data on European seabass fed with methionine-enriched diets obtained through label free shotgun proteomics
Cited by: 1
Author(s): Ana Paula Farinha, Denise Schrama, Tomé S. Silva, Luı́s E.C. Conceição, Rita Colen, Sofía Engrola, Pedro M. Rodrigues, Marco Cerqueira
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.dib.2014.08.003

Data from a proteomic analysis of colonic fibroblasts secretomes
Cited by: 4
Author(s): Sun-Xia Chen, Xiao‐En Xu, Xiaoqing Wang, Shu-Jian Cui, Leilei Xu, Yihua Jiang, Yang Zhang, Haibo Yan, Qian Zhang, Jie Qiao, Pengyuan Yang, Feng Liu
Software Mentions: 1
Published: about 11 years ago

10.1016/j.dib.2017.04.042

Proteome dataset of subcutaneous adipose tissue obtained from late pregnant dairy cows during summer heat stress and winter seasons
Cited by: 8
Author(s): Maya Zachut, Gitit Kra, L. Livshitz, Y. Portnick, S. Yakoby, Gilgi Friedlander, Yishai Levin
Software Mentions: 1
Published: over 8 years ago

10.1016/j.dib.2015.10.015

Delineating the glycoproteome of elongating cotton fiber cells
Cited by: 3
Author(s): Saravanan Kumar, Pankaj Pandey, Krishan Kumar, Vijayalakshmi Rajamani, K Padmalatha, Dhandapani Gurusamy, Kanakachari Mogilicherla, Sadhu Leelavathi, Polumetla Ananda Kumar, Vanga Siva Reddy
Software Mentions: 1
Published: about 10 years ago

10.1016/j.dib.2016.05.042

Mass-spectrometry data for Rhizoctonia solani proteins produced during infection of wheat and vegetative growth
Cited by: 4
Author(s): Jonathan P. Anderson, James K. Hane, Thomas Stoll, Nicholas Pain, Marcus L. Hastie, Parwinder Kaur, Christine Hoogland, Jeffrey J. Gorman, Karam B. Singh
Software Mentions: 1
Published: over 9 years ago

10.1016/j.dib.2015.06.019

Data set for the proteomic inventory and quantitative analysis of chicken eggshell matrix proteins during the primary events of eggshell mineralization and the active growth phase of calcification
Cited by: 11
Author(s): Pauline Marie, Valérie Labas, Aurélien Brionne, Grégoire Harichaux, Christelle Hennequet-Antier, Alejandro B. Rodrı́guez-Navarro, Yves Nys, Joël Gautron
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2015.02.004

Data for a comprehensive map and functional annotation of the human cerebrospinal fluid proteome
Cited by: 8
Author(s): Yang Zhang, Zhengguang Guo, Lili Zou, Yehong Yang, Liwei Zhang, Nan Ji, Chen Shao, Yajie Wang, Wei Sun
Software Mentions: 1
Published: over 10 years ago

10.1016/j.dib.2019.104567

Proteome dataset of subcutaneous adipose tissue from postpartum cows treated with sodium salicylate
Cited by: 3
Author(s): Caio Seiti Takiya, Shawnee Montgomery, L.K. Mamedova, Gitit Kra, Nataly Nemes-Navon, Yishai Levin, Sherry D. Fleming, B.J. Bradford, Maya Zachut
Software Mentions: 1
Published: about 6 years ago

10.1016/j.devcel.2018.03.008

The RAB11A-Positive Compartment Is a Primary Platform for Autophagosome Assembly Mediated by WIPI2 Recognition of PI3P-RAB11A
Cited by: 132
Author(s): Claudia Puri, Mariella Vicinanza, Avraham Ashkenazi, M J Gratian, Zuo‐Feng Zhang, Carla F. Bento, Maurizio Renna, Fiona M. Menzies, David C. Rubinsztein
Software Mentions: 1
Published: over 7 years ago

10.1016/j.devcel.2018.12.001

The Atypical MAP Kinase ErkB Transmits Distinct Chemotactic Signals through a Core Signaling Module
Cited by: 27
Author(s): John Me Nichols, Peggy Paschke, Sew Y. Peak‐Chew, Thomas D. Williams, Luke Tweedy, Mark Skehel, Elaine Stephens, Jonathan R. Chubb, Robert R. Kay
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13098-019-0490-2

Effects of metformin on metabolism of white and brown adipose tissue in obese C57BL/6J mice
Cited by: 17
Author(s): Tao Yuan, Juan Li, Weigang Zhao, Wei Sun, Shuainan Liu, Quan Liu, Yong Fu, Zhufang Shen
Software Mentions: 1
Published: about 6 years ago

10.3390/diagnostics10100747

Proteomics in Deaths by Drowning: Diagnostic Efficacy of Apolipoprotein A1 and α-1 Antitrypsin, Pilot Study
Cited by: 2
Author(s): Diana Hernández-Romero, Encarnación Sánchez-Rodríguez, Eduardo Osuna, Amaury Sibon, Miriam Martínez-Villanueva, José Antonio Noguera-Velasco, María D. Pérez-Cárceles
Software Mentions: 1
Published: about 5 years ago

10.1242/dmm.032573

A carcinogenic trigger to study the function of tumor suppressor genes in Schmidtea mediterranea
Cited by: 10
Author(s): Andromeda Van Roten, Amal Z. Barakat, Annelies Wouters, Thao Anh Tran, Stijn Mouton, Jean-Paul Noben, Luca Gentile, Karen Smeets
Software Mentions: 1
Published: almost 8 years ago

10.15252/embj.201797103

Cryo‐ <scp>EM</scp> reconstruction of Type <scp>VI</scp> secretion system baseplate and sheath distal end
Cited by: 70
Author(s): Sergey Nazarov, Johannes Schneider, Maximilian Brackmann, Kenneth N. Goldie, Henning Stahlberg, Marek Basler
Software Mentions: 1
Published: almost 8 years ago

10.15252/embj.201899871

Clustering of Tau fibrils impairs the synaptic composition of α3‐Na + /K + ‐ <scp>ATP</scp> ase and <scp>AMPA</scp> receptors
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Author(s): Amulya Nidhi Shrivastava, Virginie Redeker, Laura Pieri, Luc Bousset, Marianne Renner, Karine Madiona, Caroline Mailhes‐Hamon, Audrey Coens, Luc Buée, Philippe Hantraye, Antoine Triller, Ronald Melki
Software Mentions: 1
Published: almost 7 years ago

10.15252/embj.2018100024

Unanchored tri‐NEDD8 inhibits PARP‐1 to protect from oxidative stress‐induced cell death
Cited by: 33
Author(s): Matthew J. Keuss, Roland Hjerpe, Oliver Hsia, Robert Gourlay, Richard Burchmore, Matthias Trost, Thimo Kurz
Software Mentions: 1
Published: almost 7 years ago

10.15252/emmm.201707918

Inhibition of <scp>DDR</scp> 1‐ <scp>BCR</scp> signalling by nilotinib as a new therapeutic strategy for metastatic colorectal cancer
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Author(s): Maya Jeitany, Cédric Leroy, Priscillia Tosti, Marianne Lafitte, Jordy Le Guet, Valérie Simon, Débora Bonenfant, Bruno Robert, Fanny Grillet, Caroline Mollévi, Safia El Messaoudi, Amaëlle Otandault, Lucile Canterel-Thouennon, Muriel Busson, Alain R. Thierry, Pierre Martineau, Julie Pannequin, Serge Roche, Audrey Sirvent
Software Mentions: 1
Published: almost 8 years ago

10.1111/1462-2920.14732

Characterization of a thaumarchaeal symbiont that drives incomplete nitrification in the tropical spongeIanthella basta
Cited by: 42
Author(s): Florian U. Moeller, Nicole S. Webster, Craig W. Herbold, Faris Behnam, Daryl Domman, Mads Albertsen, Maria Mooshammer, Stephanie Markert, Dmitrij Turaev, Dörte Becher, Thomas Rattei, Thomas Schweder, Andreas Richter, Margarete Watzka, Per Halkjær Nielsen, Michael Wagner
Software Mentions: 1
Published: over 6 years ago

10.1111/1462-2920.13390

Comparative genomic, proteomic and exoproteomic analyses of three Pseudomonas strains reveals novel insights into the phosphorus scavenging capabilities of soil bacteria
Cited by: 60
Author(s): Ian Lidbury, Andrew Murphy, David J. Scanlan, Gary D. Bending, Alexandra M. E. Jones, Jonathan D. Moore, Andrew Goodall, John P. Hammond, Elizabeth M. H. Wellington
Software Mentions: 1
Published: over 9 years ago

10.1186/s13072-019-0322-5

Ubiquitin ligases HUWE1 and NEDD4 cooperatively control signal-dependent PRC2-Ezh1α/β-mediated adaptive stress response pathway in skeletal muscle cells
Cited by: 16
Author(s): Peng Liu, Muhammad Shuaib, Huoming Zhang, Seba Nadeef
Software Mentions: 1
Published: about 6 years ago

10.1155/2016/5176731

Serum Protein KNG1, APOC3, and PON1 as Potential Biomarkers for Yin-Deficiency-Heat Syndrome
Cited by: 10
Author(s): Changming Liu, Lian-Gen Mao, Zepeng Ping, Tingting Jiang, Chong Wang, Zhongliang Chen, Zhongjie Li, Jicheng Li
Software Mentions: 1
Published: almost 10 years ago

10.1155/2018/3523126

The Investigation of the Effect and Mechanism of Sophora moorcroftiana Alkaloids in Combination with Albendazole on Echinococcosis in an Experimental Rats Model
Cited by: 6
Author(s): Fabin Zhang, Chunhui Hu, Shilei Cheng, Shulin Wang, Bin Li, Cao DePing, Haining Fan, Ruchong Pan, Mei Yang, Yanhui Xu
Software Mentions: 1
Published: almost 8 years ago

10.1155/2015/376029

Alterations in Salivary Proteome following Single Twenty-Minute Session of Yogic Breathing
Cited by: 12
Author(s): Sundaravadivel Balasubramanian, Michael G. Janech, Graham Warren
Software Mentions: 1
Published: almost 11 years ago

10.1155/2012/548486

LC-MS/MS Identification of a Bromelain Peptide Biomarker fromAnanas comosusMerr
Cited by: 11
Author(s): Eric R. Secor, Steven M. Szczepanek, Anurag Singh, Linda Guernsey, P Natarajan, Rezaul Karim, David K. Han, Roger S. Thrall, Lawrence K. Silbart
Software Mentions: 1
Published: almost 14 years ago

10.1155/2019/4683272

Proteome Profiling of Membrane-Free Stem Cell Components by Nano-LS/MS Analysis and Its Anti-Inflammatory Activity
Cited by: 8
Author(s): Venu Venkatarame Gowda Saralamma, Preethi Vetrivel, Sang Woo Kim, Sang Eun Ha, Ho Jeong Lee, Sang Joon Lee, Young Sil Kim, Jung Eun Pak, Hye Jin Lee, Jeong‐Doo Heo
Software Mentions: 1
Published: about 6 years ago

10.1186/s13227-019-0139-0

Diverse cell junctions with unique molecular composition in tissues of a sponge (Porifera)
Cited by: 14
Author(s): Jennyfer M. Mitchell, Scott Nichols
Software Mentions: 1
Published: about 6 years ago

10.1186/2041-9139-5-19

Parallel developmental genetic features underlie stickleback gill raker evolution
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Author(s): Andrew M. Glazer, Phillip A. Cleves, Priscilla A. Erickson, Angela Y. Lam, Craig T. Miller
Software Mentions: 1
Published: almost 12 years ago

10.1038/s12276-019-0317-0

ERK-dependent phosphorylation of the linker and substrate-binding domain of HSP70 increases folding activity and cell proliferation
Cited by: 20
Author(s): Semi Lim, Dae Gyu Kim, Sung Hoon Kim
Software Mentions: 1
Published: over 6 years ago

10.1007/s00792-013-0574-0

Experimental and computational analysis of the secretome of the hyperthermophilic archaeon Pyrococcus furiosus
Cited by: 7
Author(s): Georg Schmid, Geir Mathiesen, Magnus Ø. Arntzen, Vincentius Gerardus Henricus Eijsink, Michael Thomm
Software Mentions: 1
Published: over 12 years ago

10.12688/f1000research.2-27.v1

Proteins and lipids of glycosomal membranes from Leishmania tarentolae and Trypanosoma brucei
Cited by: 36
Author(s): Claudia Colasante, Frank Voncken, Theresa Manful, Thomas Ruppert, Aloysius G. M. Tielens, Jaap J. van Hellemond, Christine Clayton
Software Mentions: 1
Published: almost 13 years ago

10.1096/fba.2019-00081

Lung cancer cells survive epidermal growth factor receptor tyrosine kinase inhibitor exposure through upregulation of cholesterol synthesis
Cited by: 16
Author(s): Mark Howell, Ryan Green, Roukiah Khalil, Elspeth Foran, Waise Quarni, R. Nair, Stanley M. Stevens, Aleksandr Grinchuk, Andrew Hanna, Shyam S. Mohapatra, Subhra Mohapatra
Software Mentions: 1
Published: almost 6 years ago

10.1002/2211-5463.12454

Suppressor of <scp>IKK</scp> epsilon forms direct interactions with cytoskeletal proteins, tubulin and α‐actinin, linking innate immunity to the cytoskeleton
Cited by: 6
Author(s): Halie A. Sonnenschein, Kenneth F Lawrence, Karli A. Wittenberg, Frank A. Slykas, Emerald L. Dohleman, Jilan B. Knoublauch, Sean M. Fahey, Timothy M. Marshall, James Marion, Jessica K. Bell
Software Mentions: 1
Published: over 7 years ago

10.1186/2045-8118-8-19

Protein profiling reveals inter-individual protein homogeneity of arachnoid cyst fluid and high qualitative similarity to cerebrospinal fluid
Cited by: 12
Author(s): Magnus Berle, Ann Cathrine Kroksveen, Øystein Ariansen Haaland, Tin Tin Aye, Jill A. Opsahl, Eystein Oveland, Knut Wester, Rune J. Ulvik, Christian A. Helland, Frode S. Berven
Software Mentions: 1
Published: over 14 years ago

10.1186/2045-8118-11-14

Removal of albumin and immunoglobulins from canine cerebrospinal fluid using depletion kits: a feasibility study
Cited by: 7
Author(s): Ramona Günther, Eberhard Krause, Michael Schümann, Jérôme Ausseil, Jean‐Michel Heard, Ingolf E. Blasig, Reiner F. Haseloff
Software Mentions: 1
Published: over 11 years ago

10.3390/foods9070932

Health Promoting Bioactive Properties of Novel Hairless Canary Seed Flour after In Vitro Gastrointestinal Digestion
Cited by: 9
Author(s): Emily Mason, Lamia L’Hocine, Allaoua Achouri, Mélanie Pitre, Salwa Karboune
Software Mentions: 1
Published: over 5 years ago

10.3390/foods10010104

Upstream Regulator Analysis of Wooden Breast Myopathy Proteomics in Commercial Broilers and Comparison to Feed Efficiency Proteomics in Pedigree Male Broilers
Cited by: 7
Author(s): Walter Bottje, Kentu Lassiter, V. A. Kuttappan, Nicholas J. Hudson, Casey M. Owens, Behnam Abasht, Sami Dridi, Byung-Whi Kong
Software Mentions: 1
Published: almost 5 years ago

10.1016/j.freeradbiomed.2018.11.022

The human allicin-proteome: S-thioallylation of proteins by the garlic defence substance allicin and its biological effects
Cited by: 50
Author(s): Martin C. H. Gruhlke, Haike Antelmann, Jörg Bernhardt, Veronika Kloubert, Lothar Rink, Alan Slusarenko
Software Mentions: 1
Published: almost 7 years ago

10.3389/fbioe.2016.00100

The Chlorella vulgaris S-Nitrosoproteome under Nitrogen-Replete and -Deplete Conditions
Cited by: 9
Author(s): Calvin A. Henard, Michael T. Guarnieri, Eric P. Knoshaug
Software Mentions: 1
Published: almost 9 years ago

10.3389/fbioe.2020.00491

Personalized Graphene Oxide-Protein Corona in the Human Plasma of Pancreatic Cancer Patients
Cited by: 42
Author(s): Riccardo Di Santo, Luca Digiacomo, Erica Quagliarini, Anna Laura Capriotti, Aldo Laganá, Riccardo Zenezini Chiozzi, Damiano Caputo, Chiara Cascone, Roberto Coppola, Daniela Pozzi, Giulio Caracciolo
Software Mentions: 1
Published: over 5 years ago

10.3389/fbioe.2015.00044

Standard Flow Liquid Chromatography for Shotgun Proteomics in Bioenergy Research
Cited by: 40
Author(s): Susana M. González Fernández-Niño, Andreia M. Smith-Moritz, Leanne Jade G. Chan, Paul D. Adams, Joshua L. Heazlewood, Young-Mo Kim
Software Mentions: 1
Published: over 10 years ago

10.3389/fcvm.2020.00093

Extracellular Matrix Disparities in an Nkx2-5 Mutant Mouse Model of Congenital Heart Disease
Cited by: 4
Author(s): Deanna Bousalis, Christopher S. Lacko, Nora Hlavac, Fariz F. Alkassis, Rebecca A. Wachs, Sahba Mobini, Christine E. Schmidt, Hideko Kasahara
Software Mentions: 1
Published: over 5 years ago

10.3389/fcell.2021.741662

Interactions and Cytotoxicity of Human Neurodegeneration- Associated Proteins Tau and α-Synuclein in the Simple Model Dictyostelium discoideum
Cited by: 3
Author(s): Katelyn Mroczek, Sanjanie Fernando, Paul R. Fisher, Sarah J. Annesley
Software Mentions: 1
Published: about 4 years ago

10.3389/fcell.2020.00125

KANK2 Links αVβ5 Focal Adhesions to Microtubules and Regulates Sensitivity to Microtubule Poisons and Cell Migration
Cited by: 19
Author(s): Mladen Paradžik, Jonathan D. Humphries, Nikolina Stojanović, Davor Nestić, Dragomira Majhen, Ana Dekanić, Ivana Samaržija, Delphine Sedda, Igor Weber, Andreja Ambriović-Ristov
Software Mentions: 1
Published: almost 6 years ago

10.3389/fcell.2021.682476

Deciphering the in vivo Dynamic Proteomics of Mesenchymal Stem Cells in Critical Limb Ischemia
Cited by: 4
Author(s): Yipeng Du, Xiaoting Li, Wenying Yan, Zicheng Zeng, Dunzheng Han, Hong Ouyang, Xiu-Di Pan, Biao Luo, Bohua Zhou, Qiang Fu, Dagang Lü, Zheng Huang, Zhiliang Li
Software Mentions: 1
Published: over 4 years ago

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