Ecosyste.ms: Papers

10.1007/s13577-012-0053-4

Proteomic analysis of differential protein expression by brain metastases of gynecological malignancies
Cited by: 34
Author(s): Ayako Yoshida, Naoki Okamoto, Akiko Tozawa-Ono, Hirotaka Koizumi, Kazushige Kiguchi, Bunpei Ishizuka, Toshio Kumai, Nao Suzuki
Software Mentions: 1
Published: over 11 years ago

10.1128/IAI.00255-15

Persistent Staphylococcus aureus Isolates from Two Independent Cases of Bacteremia Display Increased Bacterial Fitness and Novel Immune Evasion Phenotypes
Cited by: 29
Author(s): Rebecca Richards, Richard D. Haigh, Ben Pascoe, Samuel K. Sheppard, Francis W. Price, David R. Jenkins, Kumar Rajakumar, Julie A. Morrissey
Software Mentions: 1
Published: over 9 years ago

10.1128/IAI.00386-17

Salmonella enterica Serovar Typhimurium Alters the Extracellular Proteome of Macrophages and Leads to the Production of Proinflammatory Exosomes
Cited by: 61
Author(s): Winnie W. Hui, Kamil Hercík, Sayali Belsare, Navatha Alugubelly, Beata Clapp, Carlos Rinaldi, Mariola J. Edelmann
Software Mentions: 1
Published: almost 7 years ago

10.1128/IAI.00673-20

The Yersinia pestis GTPase BipA Promotes Pathogenesis of Primary Pneumonic Plague
Cited by: 4
Author(s): Samantha D Crane, Srijon Kaushik Banerjee, Kara R. Eichelberger, Richard C. Kurten, William E. Goldman, Roger D. Pechous
Software Mentions: 1
Published: almost 4 years ago

10.1007/s10753-019-00957-8

Chinese Birch Pollen Allergy and Immunotherapy in Mice
Cited by: 10
Author(s): Zhibo Xie, Jie Yin
Software Mentions: 1
Published: almost 6 years ago

10.3390/insects10090282

The Effect of Diet on the Composition and Stability of Proteins Secreted by Honey Bees in Honey
Cited by: 18
Author(s): Oleg Lewkowski, Carmen Ioana Mureşan, Dirk Dobritzsch, Matthew Fuszard, Silvio Erler
Software Mentions: 1
Published: about 5 years ago

10.1590/S1677-5538.IBJU.2020.02.07

Editorial Comment: New Insights on the Mechanisms Affecting Fertility in Men with Non-Seminoma Testicular Cancer before Cancer Therapy.
Cited by: 0
Author(s): Gustavo Cardoso Guimarães
Software Mentions: 1
Published: almost 5 years ago

10.1172/jci.insight.96184

Nox4 reprograms cardiac substrate metabolism via protein O-GlcNAcylation to enhance stress adaptation
Cited by: 43
Author(s): Adam Nabeebaccus, Anna Zoccarato, Anne Dragøy Hafstad, Célio X.C. Santos, Ellen Aasum, Alison C. Brewer, Min Zhang, Matteo Beretta, Xiaoke Yin, James A. West, Katrin Schröder, Julian L. Griffin, Thomas R. Eykyn, E. Dale Abel, Manuel Mayr, Ajay M. Shah
Software Mentions: 1
Published: almost 7 years ago

10.1172/jci.insight.135923

Elevating EGFR-MAPK program by a nonconventional Cdc42 enhances intestinal epithelial survival and regeneration
Cited by: 16
Author(s): Xiao Zhang, Sheila Bandyopadhyay, Leandro Araújo, Kevin Tong, Juan Flores, Daniel Laubitz, Yanlin Zhao, George Yap, Jingren Wang, Qingze Zou, Ronaldo P. Ferraris, Lanjing Zhang, Wenwei Hu, Edward M. Bonder, Pawel R. Kiela, Robert J. Coffey, Michael P. Verzi, Ivaylo I. Ivanov, Nan Gao
Software Mentions: 1
Published: over 4 years ago

10.1172/jci.insight.142073

Early defects in mucopolysaccharidosis type IIIC disrupt excitatory synaptic transmission
Cited by: 7
Author(s): Camila Pará, Poulomee Bose, L. Travi Bruno, Erika Freemantle, Mahsa Taherzadeh, Xuefang Pan, Chanshuai Han, Peter S. McPherson, Jean-Claude Lacaille, Éric Bonneil, Pierre Thibault, Claire O’Leary, Brian Bigger, Carlos R. Morales, Graziella Di Cristo, Alexey V. Pshezhetsky
Software Mentions: 1
Published: over 3 years ago

10.1016/j.jaci.2017.01.039

Proteomic analysis of filaggrin deficiency identifies molecular signatures characteristic of atopic eczema
Cited by: 42
Author(s): Martina S. Elias, Heather A. Long, Carla F. Newman, P. David Wilson, Andrew B. West, Paul McGill, Keith Wu, Michael Donaldson, Nick J. Reynolds
Software Mentions: 1
Published: about 7 years ago

10.1128/JB.00099-20

YjbH Requires Its Thioredoxin Active Motif for the Nitrosative Stress Response, Cell-to-Cell Spread, and Protein-Protein Interactions in <i>Listeria monocytogenes</i>
Cited by: 4
Author(s): Brittany R. Ruhland
Software Mentions: 1
Published: over 4 years ago

10.1074/jbc.M113.463372

Comparative Proteomic Analysis of Supportive and Unsupportive Extracellular Matrix Substrates for Human Embryonic Stem Cell Maintenance
Cited by: 53
Author(s): Despina Soteriou, Banu İskender, Adam Byron, Jonathan D. Humphries, Simon Borg–Bartolo, Marie-Claire Haddock, M. Baxter, David Knight, Martin J. Humphries, Susan J. Kimber
Software Mentions: 1
Published: over 11 years ago

10.1074/jbc.M113.453373

Characterization of Proprotein Convertase Subtilisin/Kexin Type 9 (PCSK9) Trafficking Reveals a Novel Lysosomal Targeting Mechanism via Amyloid Precursor-like Protein 2 (APLP2)
Cited by: 56
Author(s): Rachel M. DeVay, David L. Shelton, Lei Hong
Software Mentions: 1
Published: over 11 years ago

10.1074/jbc.M114.550657

Norovirus Translation Requires an Interaction between the C Terminus of the Genome-linked Viral Protein VPg and Eukaryotic Translation Initiation Factor 4G
Cited by: 53
Author(s): Liliane Chung, Dalan Bailey, Eoin N Leen, Edward Emmott, Yasmin Chaudhry, Lisa O. Roberts, Stephen Curry, Nicolas Locker, Ian Goodfellow
Software Mentions: 1
Published: over 10 years ago

10.1074/jbc.M114.590471

A Conformational Sampling Model for Radical Catalysis in Pyridoxal Phosphate- and Cobalamin-dependent Enzymes
Cited by: 5
Author(s): Binuraj R. K. Menon, Karl Fisher, Stephen E. J. Rigby, Nigel S. Scrutton, D. Leys
Software Mentions: 1
Published: almost 10 years ago

10.1074/jbc.M115.677419

Conserved Overlapping Gene Arrangement, Restricted Expression, and Biochemical Activities of DNA Polymerase ν (POLN)
Cited by: 10
Author(s): Kei-ichi Takata, Junya Tomida, Shelley Reh, Lisa M. Swanhart, Minoru Takata, Neil A. Hukriede, Richard D. Wood
Software Mentions: 1
Published: about 9 years ago

10.1074/jbc.M115.661439

Bacterial Rotary Export ATPases Are Allosterically Regulated by the Nucleotide Second Messenger Cyclic-di-GMP
Cited by: 82
Author(s): Eleftheria Trampari, C.E.M. Stevenson, Richard Little, Thomas Wilhelm, David M. Lawson, Jacob G. Malone
Software Mentions: 1
Published: about 9 years ago

10.1074/jbc.M116.724344

Unexpected Activity of a Novel Kunitz-type Inhibitor
Cited by: 28
Author(s): David W. Smith, Irina G. Tikhonova, Heather Jewhurst, Orla Drysdale, Jan Dvořák, Mark W. Robinson, Krystyna Cwiklinski, John P. Dalton
Software Mentions: 1
Published: about 8 years ago

10.1074/jbc.M116.758003

The Shigella Virulence Factor IcsA Relieves N-WASP Autoinhibition by Displacing the Verprolin Homology/Cofilin/Acidic (VCA) Domain
Cited by: 17
Author(s): Rui Mauricio, Cy M. Jeffries, Dmitri I. Svergun, Janet E. Deane
Software Mentions: 1
Published: almost 8 years ago

10.1074/jbc.RA118.001777

Stat3-mediated alterations in lysosomal membrane protein composition
Cited by: 24
Author(s): Bethan Lloyd-Lewis, Caroline C. Krueger, Timothy J. Sargeant, Michael D’Angelo, Michael J. Deery, Renata Feret, Julie A. Howard, Kathryn S. Lilley, Christine J. Watson
Software Mentions: 1
Published: over 6 years ago

10.1074/jbc.RA117.001483

Structural and compositional diversity of fibrillin microfibrils in human tissues
Cited by: 51
Author(s): Alexander Eckersley, Kieran T. Mellody, Suzanne M. Pilkington, Christopher E.M. Griffiths, Rachel Watson, Ronan O’Cualain, Clair Baldock, David Knight, Michael J. Sherratt
Software Mentions: 1
Published: over 6 years ago

10.1074/jbc.M117.789305

Intestinal mucin activates human dendritic cells and IL-8 production in a glycan-specific manner
Cited by: 21
Author(s): Felipe Melo-González, Thomas M. Fenton, Cecilia Forss, Catherine Smedley, Anu Goenka, Andrew S. MacDonald, David J. Thornton, Mark A. Travis
Software Mentions: 1
Published: over 6 years ago

10.1074/jbc.RA118.006452

Substitutions in the β subunits of sickle-cell hemoglobin improve oxidative stability and increase the delay time of sickle-cell fiber formation
Cited by: 9
Author(s): Fantao Meng, Tigist Kassa, Michael Brad Strader, Jayashree Soman, John S. Olson
Software Mentions: 1
Published: over 5 years ago

10.1074/jbc.RA120.014616

ELK-1 ubiquitination status and transcriptional activity are modulated independently of F-Box protein FBXO25
Cited by: 2
Author(s): Reyna Sara Quintero-Barceinas, Franziska Gehringer, Charles Ducker, Janice Saxton, Peter E. Shaw
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.jbc.2021.100278

Proteomic identification and validation of novel interactions of the putative tumor suppressor PRELP with membrane proteins including IGFI-R and p75NTR
Cited by: 8
Author(s): Hirofumi Kosuge, Makoto Nakakido, Satoru Nagatoishi, Tetsuya Fukuda, Yoshio Bando, Shin-ichi Ohnuma, Kouhei Tsumoto
Software Mentions: 1
Published: almost 4 years ago

10.1074/jbc.RA120.015162

The deubiquitinase TRABID stabilizes the K29/K48-specific E3 ubiquitin ligase HECTD1
Cited by: 18
Author(s): Lee D. Harris, Janic Le Pen, Nico Scholz, Juliusz Mieszczanek, Natalie Vaughan, Simon Davis, G. Berridge, Benedikt M. Kessler, Mariann Bienz, Julien Licchesi
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.jbc.2021.100639

The multidomain architecture of a bacteriophage endolysin enables intramolecular synergism and regulation of bacterial lysis
Cited by: 10
Author(s): Frank Oechslin, Carmen Menzi, Philippe Moreillon, Grégory Resch
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.jbc.2021.100690

Tolerance to nascent protein misfolding stress requires fine-tuning of the cAMP/PKA pathway
Cited by: 4
Author(s): Paraskevi Kritsiligkou, Karol Nowicki-Osuch, Zorana Carter, Christopher J. Kershaw, Declan R. Creamer, Alan J. Weids, Chris M. Grant
Software Mentions: 1
Published: almost 4 years ago

10.1016/j.jbc.2021.101079

Phosphorylation of slit diaphragm proteins NEPHRIN and NEPH1 upon binding of HGF promotes podocyte repair
Cited by: 3
Author(s): Ashish K. Solanki, Ehtesham Arif, Pankaj Srivastava, Christopher M. Furcht, Bushra Rahman, Pei Wen, Avinash Singh, Lawrence B. Holzman, Wayne R. Fitzgibbon, Milos N. Budisavljevic, Glenn P. Lobo, Sang Ho Kwon, Zhe Han, Matthew J. Lazzara, Joshua H. Lipschutz, Deepak Nihalani
Software Mentions: 1
Published: about 3 years ago

10.1186/s13036-019-0177-0

Functional cellulose-based hydrogels as extracellular matrices for tissue engineering
Cited by: 106
Author(s): Sayan Deb Dutta, Dinesh Kumar Patel, Ki-Taek Lim
Software Mentions: 1
Published: over 5 years ago

10.14440/jbm.2016.129

Serum proteins are extracted along with monolayer cells in plasticware and interfere with protein analysis
Cited by: 8
Author(s): Xin Hong, Yuling Meng, Steven N. Kalkanis
Software Mentions: 1
Published: over 8 years ago

10.7150/jca.40964

Quantitative proteomic analysis of bile in extrahepatic cholangiocarcinoma patients
Cited by: 15
Author(s): Kuk Hui Son, Chi Bum Ahn, Hyo Jung Kim, Jae Seon Kim
Software Mentions: 1
Published: almost 5 years ago

10.1083/jcb.201802088

Cell adhesion is regulated by CDK1 during the cell cycle
Cited by: 104
Author(s): Max Jones, Janet A. Askari, Jonathan D. Humphries
Software Mentions: 1
Published: over 6 years ago

10.1083/jcb.201709137

Phosphorylation of IRE1 at S729 regulates RIDD in B cells and antibody production after immunization
Cited by: 42
Author(s): Chih-Hang Anthony Tang, Shiun Chang, Adrienne W. Paton, James C. Paton, Dmitry I. Gabrilovich, Hidde L. Ploegh, Juan R. Del Valle, Chih‐Chi Andrew Hu
Software Mentions: 1
Published: over 6 years ago

10.1083/jcb.201809089

Phosphoregulation of tropomyosin is crucial for actin cable turnover and division site placement
Cited by: 16
Author(s): Saravanan Palani, D Köster, Tomoyuki Hatano, Anton Kamnev, Taishi Kanamaru, Holly R. Brooker, Juan R. Hernández-Fernaud, Alexandra M. E. Jones, Jonathan Millar, Daniel P. Mulvihill, Mohan K. Balasubramanian
Software Mentions: 1
Published: about 5 years ago

10.1083/jcb.201811014

GRAF2, WDR44, and MICAL1 mediate Rab8/10/11–dependent export of E-cadherin, MMP14, and CFTR ΔF508
Cited by: 16
Author(s): Safa Lucken-Ardjomande Häsler, Yvonne Vallis, Mathias Pasche, Harvey T. McMahon
Software Mentions: 1
Published: over 4 years ago

10.1111/jcmm.13145

Atrial electrophysiological and molecular remodelling induced by obstructive sleep apnoea
Cited by: 28
Author(s): Devika Channaveerappa, Jacob C. Lux, Kelly L. Wormwood, Timothy A. Heintz, Meredith McLerie, Jacqueline A. Treat, Hannah King, Donia Alnasser, Robert J. Goodrow, Glenn Ballard, Robert S. Decker, Costel C. Darie, Brian K. Panama
Software Mentions: 1
Published: over 7 years ago

10.1111/jcmm.15733

Toll‐like receptor involvement in adolescent scoliotic facet joint degeneration
Cited by: 4
Author(s): Daniel G Bisson, Kai Sheng, Semsi Kocabas, Emerson Krock, Alisson Roberto Teles, Neil Saran, Jean Ouellet, Lisbet Haglund
Software Mentions: 1
Published: about 4 years ago

10.1111/jcmm.16318

Dysregulation of ferroptosis may involve in the development of non‐small‐cell lung cancer in Xuanwei area
Cited by: 19
Author(s): Guangjian Li, Jiapeng Yang, Genming Zhao, Shen Zy, Kang Yang, Linwei Tian, Qinghua Zhou, Ying Chen, Yunchao Huang
Software Mentions: 1
Published: almost 4 years ago

10.1242/jcs.152470

Promiscuous methionyl-tRNA synthetase mediates adaptive mistranslation against oxidative stresses
Cited by: 64
Author(s): Jin Young Lee, Dae Gyu Kim, Byung Gyu Kim, Won-Mo Yang, Jung Sun Hong, Taehee Kang, Yung-Hwan Oh, Kyung Rok Kim, Byung Woo Han, Byung Joon Hwang, Beom Sik Kang, Mi Sun Kang, Myung Hee Kim, Nam Hoon Kwon, Sung Hoon Kim
Software Mentions: 1
Published: almost 11 years ago

10.1242/jcs.199398

Compositionally distinct nuclear pore complexes of functionally distinct dimorphic nuclei in ciliate <i>Tetrahymena</i>
Cited by: 24
Author(s): Mutsuo Iwamoto, Hiroko Osakada, Chie Mori, Yasuhiro Fukuda, Koji Nagao, Chikashi Obuse, Yasushi Hiraoka, Tokuko Haraguchi
Software Mentions: 1
Published: almost 8 years ago

10.1242/jcs.214924

Mutations that prevent methylation of cohesin render sensitivity to DNA damage
Cited by: 2
Author(s): Swastika Sanyal, Lucia Molnárová, Judita Richterova, Barbora Huraiová, Zsigmond Benkő, Silvia Poláková, Ingrid Čipáková, Andrea Ševčovičová, Katarína Gaplovská-Kyselá, Karl Mechtler, Luboš Čipák, Juraj Gregáň
Software Mentions: 1
Published: almost 7 years ago

10.1186/1758-2946-3-14

Analysis of in vitrobioactivity data extracted from drug discovery literature and patents: Ranking 1654 human protein targets by assayed compounds and molecular scaffolds
Cited by: 32
Author(s): Christopher Southan, Kiran Boppana, Sarma A.R.P. Jagarlapudi, Sorel Mureşan
Software Mentions: 1
Published: over 13 years ago

10.1186/1758-2946-4-20

Mining collections of compounds with Screening Assistant 2
Cited by: 26
Author(s): Vincent Le Guilloux, Alban Arrault, Lionel Colliandre, Stéphane Bourg, Philippe Vayer, Luc Morin‐Allory
Software Mentions: 1
Published: about 12 years ago

10.1186/s13321-016-0186-7

Scaffold analysis of PubChem database as background for hierarchical scaffold-based visualization
Cited by: 11
Author(s): Jakub Velkoborský, David Hoksza
Software Mentions: 1
Published: almost 8 years ago

10.1186/s13321-017-0213-3

Scaffold Hunter: a comprehensive visual analytics framework for drug discovery
Cited by: 48
Author(s): Till Schäfer, Nils M. Kriege, Lina Humbeck, Karsten Klein, Oliver Koch, Petra Mutzel
Software Mentions: 1
Published: over 7 years ago

10.1186/2043-9113-1-17

Quantitative analysis of histone exchange for transcriptionally active chromatin
Cited by: 14
Author(s): Stephanie D. Byrum, Sean D. Taverna, Alan J. Tackett
Software Mentions: 1
Published: almost 14 years ago

10.1186/2043-9113-1-23

Preferential expression of potential markers for cancer stem cells in large cell neuroendocrine carcinoma of the lung. An FFPE proteomic study
Cited by: 24
Author(s): Masatoshi Nomura, Tetsuya Fukuda, Kiyonaga Fujii, Takeshi Kawamura, Hiromasa Tojo, Makoto Kihara, Yoshio Bando, Adi F. Gazdar, Masahiro Tsuboi, Hisashi Oshiro, Toshitaka Nagao, Tetsuya Ohira, Norihiko Ikeda, Noriko Gotoh, Harubumi Kato, György Markó-Varga, Toshihide Nishimura
Software Mentions: 1
Published: almost 14 years ago

10.3390/jcm9030639

Urine E-cadherin: A Marker for Early Detection of Kidney Injury in Diabetic Patients
Cited by: 9
Author(s): Michael Koziolek, G. Muêller, Gry H. Dihazi, Klaus Jung, Constanze Altubar, Manuel Wallbach, Ivana Hanzec Marković, Dirk Roggenbuck, Olaf Jahn, Hülya Karaköse, Christof Lenz, Henning Urlaub, Abdelhi Dihazi, Abdellatif El Meziane, Hassan Dihazi
Software Mentions: 1
Published: over 4 years ago

10.3390/jcm9092915

Characterization of LP-Z Lipoprotein Particles and Quantification in Subjects with Liver Disease Using a Newly Developed NMR-Based Assay
Cited by: 14
Author(s): Shimpi Bedi, Erwin Garcia, Elias J. Jeyarajah, Irina Shalaurova, Maria Camila Pérez-Matos, Zhigang Jiang, Robin Dullaart, Steven P. Matyus, William J. Kirk, James D. Otvos, W. Sean Davidson, Margery A. Connelly
Software Mentions: 1
Published: about 4 years ago

10.3390/jcm10040793

Patients with Proliferative Lupus Nephritis Have Autoantibodies That React to Moesin and Demonstrate Increased Glomerular Moesin Expression
Cited by: 2
Author(s): Dawn J. Caster, Erik A. Korte, Michael L. Merchant, Jon B. Klein, Michelle T. Barati, Ami Joglekar, Daniel W. Wilkey, Susan Coventry, Jessica Hata, Brad H. Rovin, John B. Harley, Bahram Namjou‐Khales, Kenneth R. McLeish, David Powell
Software Mentions: 1
Published: almost 4 years ago

10.1128/JCM.00469-17

Potential of High-Affinity, Slow Off-Rate Modified Aptamer Reagents for Mycobacterium tuberculosis Proteins as Tools for Infection Models and Diagnostic Applications
Cited by: 27
Author(s): Theresa M. Russell, Louis S. Green, Taylor Rice, Nicole A. Kruh-Garcia, Karen M. Dobos, Mary Ann De Groote, Thomas Hraha, David Sterling, Nebojša Janjić, Urs A. Ochsner
Software Mentions: 1
Published: about 7 years ago

10.1002/cne.24141

Cellular localization of relaxin-like gonad-stimulating peptide expression in<i>Asterias rubens</i>: New insights into neurohormonal control of spawning in starfish
Cited by: 44
Author(s): Mingxiang Lin, Masatoshi Mita, Michaela Egertová, Cleidiane G. Zampronio, Alexandra M. E. Jones, Maurice R. Elphick
Software Mentions: 1
Published: about 8 years ago

10.1002/cne.24309

Pedal peptide/orcokinin-type neuropeptide signaling in a deuterostome: The anatomy and pharmacology of starfish myorelaxant peptide in<i>Asterias rubens</i>
Cited by: 30
Author(s): Mingxiang Lin, Michaela Egertová, Cleidiane G. Zampronio, Alexandra M. E. Jones, Maurice R. Elphick
Software Mentions: 1
Published: about 7 years ago

10.1155/2016/8076796

Investigation of the Effects and Mechanisms of Mai Tong Formula on Lower Limb Macroangiopathy in a Spontaneous Diabetic Rat Model
Cited by: 5
Author(s): Guangming Gong, Haipo Yuan, Ya Liu, Qi Lei
Software Mentions: 1
Published: almost 9 years ago

10.1093/jxb/ert345

Proteomics profiling reveals novel proteins and functions of the plant stigma exudate
Cited by: 39
Author(s): Juan David Rejón, François Delalande, Christine Schaeffer-Reiss, Christine Carapito, Krzysztof Zienkiewicz, Juan de Dios Alché, Marìa Isabel Rodríguez-García, Alain Van Dorsselaer, Antonio Jesús Castro
Software Mentions: 1
Published: about 11 years ago

10.1093/jxb/eru350

Proteomic profiling reveals insights into Triticeae stigma development and function
Cited by: 9
Author(s): Nazila Nazemof, Philippe Couroux, Christof Rampitsch, Tim Xing, Laurian S. Robert
Software Mentions: 1
Published: about 10 years ago

10.1093/jxb/erv388

New isoforms and assembly of glutamine synthetase in the leaf of wheat (<i>Triticum aestivum</i>L.)
Cited by: 24
Author(s): Xiaochun Wang, Yihao Wei, Lan-Xin Shi, Xinming Ma, Steven M. Theg
Software Mentions: 1
Published: over 9 years ago

10.1093/jxb/ery325

An L,L-diaminopimelate aminotransferase mutation leads to metabolic shifts and growth inhibition in Arabidopsis
Cited by: 2
Author(s): João M. B. Cavalcanti, Menny Kirma, Jessica A S Barros, Carla G.S. Quinhones, Ítalo A. Pereira-Lima, Toshihiro Obata, Adriano Nunes‐Nesi, Gad Galili, Alisdair R. Fernie, Tamar Avin‐Wittenberg, Wagner L. Araújo
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.0010017

Identification of the Moving Junction Complex of Toxoplasma gondii: A Collaboration between Distinct Secretory Organelles
Cited by: 356
Author(s): David Alexánder, Jeffrey Mital, Gary E. Ward, Peter J. Bradley, John C. Boothroyd
Software Mentions: 1
Published: about 19 years ago

10.1371/journal.ppat.1002875

The Irish Potato Famine Pathogen Phytophthora infestans Translocates the CRN8 Kinase into Host Plant Cells
Cited by: 71
Author(s): Mireille van Damme, Tolga O. Bozkurt, Cahid Çakir, Sebastián Schornack, Jan Sklenář, Alexandra M. E. Jones, Sophien Kamoun
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.ppat.1003123

The Tomato Prf Complex Is a Molecular Trap for Bacterial Effectors Based on Pto Transphosphorylation
Cited by: 52
Author(s): Vardis Ntoukakis, Alexi L. Balmuth, Tatiana S. Mucyn, Jose R. Gutierrez, Alexandra M. E. Jones, John P. Rathjen
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.ppat.1003465

Myxoma Virus Protein M029 Is a Dual Function Immunomodulator that Inhibits PKR and Also Conscripts RHA/DHX9 to Promote Expanded Host Tropism and Viral Replication
Cited by: 56
Author(s): Masmudur M. Rahman, Jia Liu, Winnie Chan, Stefan Rothenburg, Grant McFadden
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1003564

Phosphorylation of Calcineurin at a Novel Serine-Proline Rich Region Orchestrates Hyphal Growth and Virulence in Aspergillus fumigatus
Cited by: 54
Author(s): Praveen R. Juvvadi, Christopher Gehrke, Jarrod R. Fortwendel, Frédéric Lamoth, Erik J. Soderblom, Erik C. Cook, Michael A. Hast, Yohannes G. Asfaw, M. Arthur Moseley, T. Creamer, William J. Steinbach
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.ppat.1003653

Novel Staphylococcal Glycosyltransferases SdgA and SdgB Mediate Immunogenicity and Protection of Virulence-Associated Cell Wall Proteins
Cited by: 58
Author(s): Wouter L. W. Hazenbos, Kimberly K. Kajihara, Richard Vandlen, J. Hiroshi Morisaki, Sophie M. Lehar, Mark J. Kwakkenbos, Tim Beaumont, Arjen Q. Bakker, Qui Phung, Lee R. Swem, Satish Ramakrishnan, Janice Kim, Min Xu, Ishita M. Shah, Binh An Diep, Tao Sai, Andrew Sebrell, Yana Khalfin, Angela Oh, Christopher M. Koth, Shin-Pin Lin, Byoung-Chul Lee, Magnus Strandh, Klaus Koefoed, Peter S. Andersen, Hergen Spits, Eric J. Brown, Man‐Wah Tan, Sanjeev Mariathasan
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.ppat.1003840

Overcoming Antigenic Diversity by Enhancing the Immunogenicity of Conserved Epitopes on the Malaria Vaccine Candidate Apical Membrane Antigen-1
Cited by: 74
Author(s): Sandeep Dutta, Lisa S. Dlugosz, Damien R. Drew, Xiaopeng Ge, Ababacar Diouf, Yazmin I. Rovira, J. Kathleen Moch, M. Shi, Carole A. Long, Michael Foley, James G. Beeson, Robin F. Anders, Kazutoyo Miura, J. David Haynes, Adrian H. Batchelor
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1003884

Lu/BCAM Adhesion Glycoprotein Is a Receptor for Escherichia coli Cytotoxic Necrotizing Factor 1 (CNF1)
Cited by: 34
Author(s): Marianne Piteau, Panagiotis Papatheodorou, Carsten Schwan, Andreas Schlösser, Klaus Aktories, Gudula Schmidt
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1003954

The Chlamydia trachomatis Type III Secretion Chaperone Slc1 Engages Multiple Early Effectors, Including TepP, a Tyrosine-phosphorylated Protein Required for the Recruitment of CrkI-II to Nascent Inclusions and Innate Immune Signaling
Cited by: 75
Author(s): Yi Shan Chen, Robert J. Bastidas, Héctor Alex Saka, Victoria K. Carpenter, Kristian L. Richards, Gregory V. Plano, Raphael H. Valdivia
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.ppat.1004496

The Plasmodesmal Protein PDLP1 Localises to Haustoria-Associated Membranes during Downy Mildew Infection and Regulates Callose Deposition
Cited by: 121
Author(s): Marie‐Cécile Caillaud, Lennart Wirthmueller, Jan Sklenář, Kim Findlay, Sophie J. M. Piquerez, Alexandra M. E. Jones, Silke Robatzek, Jonathan D. G. Jones, Christine Faulkner
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.ppat.1004776

Impact of Leishmania Infection on Host Macrophage Nuclear Physiology and Nucleopore Complex Integrity
Cited by: 32
Author(s): Amandine Isnard, Jan G. Christian, Mohamed Kodiha, Ursula Stochaj, W. Robert McMaster, Martin Olivier
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1004939

Selective Recruitment of Nuclear Factors to Productively Replicating Herpes Simplex Virus Genomes
Cited by: 93
Author(s): Jill A. Dembowski, Neal A. DeLuca
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.ppat.1005209

Carcinogenic Parasite Secretes Growth Factor That Accelerates Wound Healing and Potentially Promotes Neoplasia
Cited by: 77
Author(s): Michael J. Smout, Javier Sotillo, Thewarach Laha, Atiroch Papatpremsiri, Gabriel Rinaldi, Rafael N. Pimenta, Lai Yue Chan, Michael Johnson, Lynne Turnbull, Cynthia B. Whitchurch, Paul Giacomin, Corey S. Moran, Jonathan Golledge, Norelle L. Daly, Banchob Sripa, Jason Mulvenna, Paul J. Brindley, Alex Loukas
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.ppat.1005416

The Distribution of Prion Protein Allotypes Differs Between Sporadic and Iatrogenic Creutzfeldt-Jakob Disease Patients
Cited by: 16
Author(s): Roger A. Moore, Mark W. Head, James W. Ironside, Diane Ritchie, Gianluigi Zanusso, Young Pyo Choi, Suzette A. Priola
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.ppat.1005756

Static Clathrin Assemblies at the Peripheral Vacuole—Plasma Membrane Interface of the Parasitic Protozoan Giardia lamblia
Cited by: 41
Author(s): Jon Paulin Zumthor, Lenka Černíková, Rout Samuel, Andres Kaech, Carmen Faso, Adrian B. Hehl
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1005810

New World and Old World Alphaviruses Have Evolved to Exploit Different Components of Stress Granules, FXR and G3BP Proteins, for Assembly of Viral Replication Complexes
Cited by: 135
Author(s): Dal–Young Kim, Joséphine M. Reynaud, Rasalouskaya Aliaksandra, Ivan Akhrymuk, James A. Mobley, Ilya Frolov, Elena I. Frolova
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.ppat.1005889

Microbiome Composition and Function Drives Wound-Healing Impairment in the Female Genital Tract
Cited by: 100
Author(s): Alexander S. Zevin, Irene Y. Xie, Kenzie Birse, Kelly B. Arnold, Laura Romas, Garrett Westmacott, Richard M. Novak, Stuart McCorrister, Lyle R. McKinnon, Craig R. Cohen, Romel D. Mackelprang, Jairam R. Lingappa, D. A. Lauffenburger, Nichole R. Klatt, Adam Burgener
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.ppat.1007341

C-terminal processing of GlyGly-CTERM containing proteins by rhombosortase in Vibrio cholerae
Cited by: 10
Author(s): Shilpa Gadwal, Tanya Johnson, Henriette A. Remmer, Maria Sandkvist
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.ppat.1008305

HIV protease cleaves the antiviral m6A reader protein YTHDF3 in the viral particle
Cited by: 38
Author(s): Denise Jurczyszak, Wen Zhang, Sandra Terry, Thomas Kehrer, Maria C. Bermúdez González, Emma McGregor, Lubbertus C. F. Mulder, Matthew J. Eckwahl, Tao Pan, Viviana Simon
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.ppat.1008776

Characterization of a novel AraC/XylS-regulated family of N-acyltransferases in pathogens of the order Enterobacterales
Cited by: 13
Author(s): Laura Belmont-Monroy, Waleska Saitz-Rojas, Jorge Soria-Bustos, Abigail S. Mickey, Nicholas E. Sherman, Benjamin C. Orsburn, Fernando Ruı́z-Pérez, Araceli E. Santiago
Software Mentions: 1
Published: about 4 years ago

10.3382/ps/pew444

Exploring the in vivo digestion of plant proteins in broiler chickens
Cited by: 14
Author(s): Emilie Recoules, Houda Sabboh-Jourdan, Agnès Narcy, Michel Lessire, Grégoire Harichaux, Valérie Labas, M. J. Duclos, Sophie Réhault-Godbert
Software Mentions: 1
Published: over 7 years ago

10.1098/rspb.2019.1091

Mosquitoes cloak their legs to resist insecticides
Cited by: 49
Author(s): Vasileia Balabanidou, Mary Kefi, Michalis Aivaliotis, John Vontas, Juan Roberto Girotti, Sergio Javier Mijailovsky, M. Patricia Juárez, Eva Papadogiorgaki, George Chalepakis, Anastasia Kampouraki, Christoforos Nikolaou, Hilary Ranson, John Vontas
Software Mentions: 1
Published: over 5 years ago

10.1186/1477-5956-7-42

Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt-stressed Arabidopsis thaliana
Cited by: 64
Author(s): Jue‐Liang Hsu, Lan-Yu Wang, Shuying Wang, Chih-Peng Lin, Kuo-Chieh Ho, Fong-Ku Shi, Ing-Feng Chang
Software Mentions: 1
Published: about 15 years ago

10.1186/1477-5956-8-22

Investigation of PARP-1, PARP-2, and PARG interactomes by affinity-purification mass spectrometry
Cited by: 136
Author(s): Maxim Isabelle, Xavier Moreel, Jean-Philippe Gagné, Michèle Rouleau, Chantal Éthier, Pierre Gagné, Michael J. Hendzel, Guy G. Poirier
Software Mentions: 1
Published: over 14 years ago

10.1186/1477-5956-8-68

A label-free differential quantitative mass spectrometry method for the characterization and identification of protein changes during citrus fruit development
Cited by: 45
Author(s): Ehud Katz, Mario Fon, Richard A. Eigenheer, Brett S. Phinney, Joseph Fass, Dazhen Lin, Avi Sadka, Eduardo Blumwald
Software Mentions: 1
Published: almost 14 years ago

10.1186/1477-5956-8-64

Proteomic profiling of proteins associated with the rejuvenation of Sequoia sempervirens (D. Don) Endl
Cited by: 19
Author(s): Ing-Feng Chang, Peng‐Jen Chen, Chih-Ya Shen, Tar‐Hwa Hsieh, Ya-Wen Hsu, Bo Huang, Ching-I Kuo, Yuting Chen, Hsiu-An Chu, Kai‐Wun Yeh, Li-Chun Huang
Software Mentions: 1
Published: almost 14 years ago

10.1186/1477-5956-9-8

Analysis of protein composition of rabbit aqueous humor following two different cataract surgery incision procedures using 2-DE and LC-MS/MS
Cited by: 14
Author(s): Miroslava Šťastná, Ashley Behrens, Peter J. McDonnell, Jennifer E. Van Eyk
Software Mentions: 1
Published: almost 14 years ago

10.1186/1477-5956-9-29

Evaluation of formalin-fixed paraffin-embedded tissues in the proteomic analysis of parathyroid glands
Cited by: 23
Author(s): Elena Donadio, Laura Giusti, Filomena Cetani, Ylenia Da Valle, Federica Ciregia, Gino Giannaccini, Elena Pardi, Federica Saponaro, Liborio Torregrossa, Fulvio Basolo, Claudio Marcocci, Antonio Lucacchini
Software Mentions: 1
Published: over 13 years ago

10.1186/1477-5956-9-39

Comparative analysis of the Spirulina platensis subcellular proteome in response to low- and high-temperature stresses: uncovering cross-talk of signaling components
Cited by: 29
Author(s): Pavinee Kurdrid, Jittisak Senachak, Matura Sirijuntarut, Rayakorn Yutthanasirikul, Phuttawadee Phuengcharoen, Wattana Jeamton, Sittiruk Roytrakul, Supapon Cheevadhanarak, Apiradee Hongsthong
Software Mentions: 1
Published: over 13 years ago

10.1186/1477-5956-9-42

Identification of azurocidin as a potential periodontitis biomarker by a proteomic analysis of gingival crevicular fluid
Cited by: 52
Author(s): Young–Jin Choi, Sun-Hee Heo, Jae-Mok Lee, Je‐Yoel Cho
Software Mentions: 1
Published: almost 14 years ago

10.1186/1477-5956-9-10

Deciphering the complexities of the wheat flour proteome using quantitative two-dimensional electrophoresis, three proteases and tandem mass spectrometry
Cited by: 173
Author(s): Frances M. DuPont, William H. Vensel, Charlene K. Tanaka, William J. Hurkman, Susan B. Altenbach
Software Mentions: 1
Published: almost 14 years ago

10.1186/1477-5956-10-19

Novel protein extraction approach using micro-sized chamber for evaluation of proteins eluted from formalin-fixed paraffin-embedded tissue sections
Cited by: 6
Author(s): Keiichi Hatakeyama, Kanako Wakabayashi‐Nakao, Yutaka Aoki, Shun‐ichiro Ogura, Ken Yamaguchi, Takashi Nakajima, Takaaki Sato, Tohru Mochizuki, I. Hayashi
Software Mentions: 1
Published: almost 13 years ago

10.1186/1477-5956-10-50

Human giant congenital melanocytic nevus exhibits potential proteomic alterations leading to melanotumorigenesis
Cited by: 9
Author(s): Hyoung Kyu Kim, Yong Kyu Kim, In-Sung Song, Sungryul Lee, Sang Hoon Jeong, Min Hee Kim, Dae Yun Seo, Nari Kim, Byoung Doo Rhee, Kyoung Soo Ko, Kwan Chul Tark, Chul Gyoo Park, Je‐Yoel Cho, Jin Han
Software Mentions: 1
Published: over 12 years ago

10.1186/1477-5956-10-74

Proteomic analysis of S-nitrosylation induced by 1-methyl-4-phenylpyridinium (MPP+)
Cited by: 7
Author(s): Akira T. Komatsubara, Taku Asano, Hiroki Tsumoto, Kazuharu Shimizu, Takumi Nishiuchi, Masanori Yoshizumi, Kentaro Ozawa
Software Mentions: 1
Published: almost 12 years ago

10.1186/1477-5956-11-12

Proteomic analysis of elite soybean Jidou17 and its parents using iTRAQ-based quantitative approaches
Cited by: 50
Author(s): Jun Qin, Feng Gu, Duan Liu, Chang-Cheng Yin, Shuangjin Zhao, Hao Chen, Jianan Zhang, Chen Yang, Xu Zhan, Mengchen Zhang
Software Mentions: 1
Published: over 11 years ago

10.1186/1477-5956-11-17

Whole gel processing procedure for GeLC-MS/MS based proteomics
Cited by: 75
Author(s): Sander R. Piersma, Marc O. Warmoes, Meike de Wit, Inge de Reus, Jaco C. Knol, Connie R. Jiménez
Software Mentions: 1
Published: almost 12 years ago

10.1186/1477-5956-12-8

Protein composition of wheat gluten polymer fractions determined by quantitative two-dimensional gel electrophoresis and tandem mass spectrometry
Cited by: 54
Author(s): William H. Vensel, Charlene K. Tanaka, Susan B. Altenbach
Software Mentions: 1
Published: almost 11 years ago

10.1186/1477-5956-12-16

Phosphoproteomic analysis of the non-seed vascular plant model Selaginella moellendorffii
Cited by: 15
Author(s): Xi Chen, Wai Lung Chan, Feng Zhu, Clive Lo
Software Mentions: 1
Published: over 10 years ago

10.1186/1477-5956-12-35

Comparative secretome analysis of Streptomyces scabiei during growth in the presence or absence of potato suberin
Cited by: 19
Author(s): Doaa A. Komeil, Rebeca Padilla-Reynaud, Sylvain Lerat, Anne-Marie Simao-Beaunoir, Carole Beaulieu
Software Mentions: 1
Published: over 10 years ago

10.1186/1477-5956-12-42

Dynamic changes of urinary proteins in a focal segmental glomerulosclerosis rat model
Cited by: 37
Author(s): Mindi Zhao, Menglin Li, Xundou Li, Chen Shao, Jianrui Yin, Youhe Gao
Software Mentions: 1
Published: over 10 years ago