Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: RiboCode

https://packages.ecosyste.ms/registries/pypi.org/packages/RiboCode

A package for identifying the translated ORFs using ribosome-profiling data
20 versions
Latest release: over 1 year ago
56 downloads last month

Papers Mentioning RiboCode 8

Genome-Wide Identification and Characterization of Small Peptides in Maize
Cited by: 15
Author(s): Yan Liang, Wanchao Zhu, Sijia Chen, Qidong Jia, Li Lin
Software Mentions: 5
Published: over 3 years ago

10.1186/s12859-020-03670-8

RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
Cited by: 9
Author(s): Fajin Li, Xudong Xing, Zhao Xiao, Xu Gang, Xuerui Yang
Software Mentions: 5
Published: over 4 years ago

10.3390/life11070701

RiboNT: A Noise-Tolerant Predictor of Open Reading Frames from Ribosome-Protected Footprints
Cited by: 8
Author(s): Bo Song, Mengyun Jiang, Lei Gao
Software Mentions: 4
Published: over 3 years ago

10.1242/jcs.252767

<i>N</i>1-acetylspermidine is a determinant of hair follicle stem cell fate
Cited by: 11
Author(s): Kira Allmeroth, Christine S. Kim, Andrea Annibal, Andromachi Pouikli, Janis Koester, Maxime Derisbourg, Carlos Andrés Chacón‐Martínez, Christian Latza, Adam Antebi, Peter Tessarz, Sara A. Wickström, Martin S. Denzel
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2020.572237

Construction of High-Quality Rice Ribosome Footprint Library
Cited by: 4
Author(s): Xiaoyu Yang, Jie Cui, Bo Song, Yu Yu, Beixin Mo, Lin Liu
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0222459

uORF-Tools—Workflow for the determination of translation-regulatory upstream open reading frames
Cited by: 8
Author(s): Anica Scholz, Florian Eggenhofer, Rick Gelhausen, Björn Grüning, Kathi Zarnack, Bernhard Brüne, Rolf Backofen, Tobias Schmid
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-021-07922-6

Comparative ribosome profiling reveals distinct translational landscapes of salt-sensitive and -tolerant rice
Cited by: 7
Author(s): Xiaoyu Yang, Bo Song, Jie Cui, Lina Wang, Shuoshuo Wang, Linlin Luo, Lei Gao, Beixin Mo, Yu Yu, Lin Liu
Software Mentions: 2
Published: over 3 years ago

10.3389/fonc.2020.622294

LncRNA-Encoded Peptide: Functions and Predicting Methods
Cited by: 47
Author(s): Jiani Xing, Haizhou Liu, Wei Jiang, Lihong Wang
Software Mentions: 2
Published: almost 4 years ago