Projects: pypi: RiboCode
https://packages.ecosyste.ms/registries/pypi.org/packages/RiboCode
A package for identifying the translated ORFs using ribosome-profiling data
20 versions
Latest release: almost 3 years ago
56 downloads last month
Enhanced Analysis
Educational Contributors:
yangxuerui@tsinghua.edu.cn
Repository Activity:
Repository Owner:
xryanglab (organization)
Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+15
Institutional repository owner
Repository owned by research institution -
+8
Science terms in README
4 scientific terms found in README -
+20
DOI references
2 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning RiboCode 8
10.3389/fpls.2021.695439
Genome-Wide Identification and Characterization of Small Peptides in MaizeCited by: 15
Author(s): Yan Liang, Wanchao Zhu, Sijia Chen, Qidong Jia, Li Lin
Software Mentions: 5
Published: about 5 years ago
10.1186/s12859-020-03670-8
RiboMiner: a toolset for mining multi-dimensional features of the translatome with ribosome profiling dataCited by: 9
Author(s): Fajin Li, Xudong Xing, Zhao Xiao, Xu Gang, Xuerui Yang
Software Mentions: 5
Published: almost 6 years ago
10.3390/life11070701
RiboNT: A Noise-Tolerant Predictor of Open Reading Frames from Ribosome-Protected FootprintsCited by: 8
Author(s): Bo Song, Mengyun Jiang, Lei Gao
Software Mentions: 4
Published: almost 5 years ago
10.1242/jcs.252767
<i>N</i>1-acetylspermidine is a determinant of hair follicle stem cell fateCited by: 11
Author(s): Kira Allmeroth, Christine S. Kim, Andrea Annibal, Andromachi Pouikli, Janis Koester, Maxime Derisbourg, Carlos Andrés Chacón‐Martínez, Christian Latza, Adam Antebi, Peter Tessarz, Sara A. Wickström, Martin S. Denzel
Software Mentions: 3
Published: about 5 years ago
10.3389/fpls.2020.572237
Construction of High-Quality Rice Ribosome Footprint LibraryCited by: 4
Author(s): Xiaoyu Yang, Jie Cui, Bo Song, Yu Yu, Beixin Mo, Lin Liu
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0222459
uORF-Tools—Workflow for the determination of translation-regulatory upstream open reading framesCited by: 8
Author(s): Anica Scholz, Florian Eggenhofer, Rick Gelhausen, Björn Grüning, Kathi Zarnack, Bernhard Brüne, Rolf Backofen, Tobias Schmid
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12864-021-07922-6
Comparative ribosome profiling reveals distinct translational landscapes of salt-sensitive and -tolerant riceCited by: 7
Author(s): Xiaoyu Yang, Bo Song, Jie Cui, Lina Wang, Shuoshuo Wang, Linlin Luo, Lei Gao, Beixin Mo, Yu Yu, Lin Liu
Software Mentions: 2
Published: almost 5 years ago
10.3389/fonc.2020.622294
LncRNA-Encoded Peptide: Functions and Predicting MethodsCited by: 47
Author(s): Jiani Xing, Haizhou Liu, Wei Jiang, Lihong Wang
Software Mentions: 2
Published: over 5 years ago