Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: Rails
https://packages.ecosyste.ms/registries/pypi.org/packages/Rails
Rails - python web framework
5 versions
Latest release: about 9 years ago
45 downloads last month
Papers Mentioning Rails 22
10.1371/journal.pcbi.1000589
A Quick Guide for Developing Effective Bioinformatics Programming SkillsCited by: 45
Author(s): Joel T. Dudley, Atul J. Butte
Software Mentions: 7
Published: almost 15 years ago
10.1186/s13073-015-0226-3
The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associationsCited by: 70
Author(s): HoJoon Lee, Jennifer Palm, Susan M. Grimes, Hanlee P. Ji
Software Mentions: 6
Published: about 9 years ago
10.1093/gigascience/giz059
A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)Cited by: 13
Author(s): Bruno Louro, Gianluca De Moro, Carlos M.E.V.R. Garcia, Cymon J. Cox, Ana Veríssimo, Stephen J. Sabatino, António M. Santos, Adelino V.M. Canário
Software Mentions: 3
Published: over 5 years ago
10.1186/s12859-015-0761-3
An automated real-time integration and interoperability framework for bioinformaticsCited by: 8
Author(s): Pedro Lopes, José Luís Oliveira
Software Mentions: 3
Published: about 9 years ago
10.1186/1471-2164-11-538
AnnoTrack - a tracking system for genome annotationCited by: 9
Author(s): Felix Kokocinski, Jennifer Harrow, Tim Hubbard
Software Mentions: 2
Published: about 14 years ago
10.1186/1471-2105-13-240
The Ruby UCSC API: accessing the UCSC genome database using RubyCited by: 3
Author(s): Hiroyuki Mishima, Jan Aerts, Toshiaki Katayama, Raoul Jean Pierre Bonnal, Koh-ichiro Yoshiura
Software Mentions: 2
Published: about 12 years ago
10.1186/1471-2105-15-S1-S13
QTREDS: a Ruby on Rails-based platform for omics laboratoriesCited by: 8
Author(s): Piergiorgio Palla, Gianfranco Frau, L Vargiu, Patricia Rodriguez-Tomé
Software Mentions: 2
Published: almost 11 years ago
10.1186/1471-2148-8-144
Exploring historical trends using taxonomic name metadataCited by: 5
Author(s): Indra Neil Sarkar, Ryan Schenk, Cathy N. Norton
Software Mentions: 2
Published: almost 17 years ago
10.1186/1471-2164-12-429
Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling dataCited by: 47
Author(s): Gareth R. Howell, David O Walton, Benjamin L. King, Richard T. Libby, Simon W. M. John
Software Mentions: 2
Published: about 13 years ago
10.1371/journal.pone.0021088
A Flexible Approach for Highly Multiplexed Candidate Gene Targeted ResequencingCited by: 14
Author(s): Georges Natsoulis, John Bell, Hua Xu, Jason D. Buenrostro, Heather Ordonez, Susan M. Grimes, Daniel E. Newburger, Michael A. Jensen, Jacob M. Zahn, Nancy R. Zhang, Hanlee P. Ji
Software Mentions: 2
Published: over 13 years ago
10.1111/gtc.12053
<scp>FASTER</scp> : an unsupervised fully automated sleep staging method for miceCited by: 39
Author(s): Genshiro A. Sunagawa, Hiroyoshi Séi, Shigeki Shimba, Yoshihiro Urade, Hiroki R. Ueda
Software Mentions: 2
Published: over 11 years ago
10.3390/ijerph120606352
SaDA: From Sampling to Data Analysis—An Extensible Open Source Infrastructure for Rapid, Robust and Automated Management and Analysis of Modern Ecological High-Throughput Microarray DataCited by: 7
Author(s): Kumar Saurabh Singh, Dominique Thual, Roberto Spurio, Nicola Cannata
Software Mentions: 2
Published: over 9 years ago
10.1002/minf.201200037
The Internet as Scientific Knowledge Base: Navigating the Chem-Bio SpaceCited by: 6
Author(s): Katrin Stierand, Tim Harder, Thomas H. Marek, Matthias Hilbig, Christian Lemmen, Matthias Rarey
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-2164-10-604
The other side of comparative genomics: genes with no orthologs between the cow and other mammalian speciesCited by: 9
Author(s): Raffaele Mazza, Francesco Strozzi, Andrea Caprera, Paolo Ajmone‐Marsan, J. L. Williams
Software Mentions: 1
Published: almost 16 years ago
10.1186/1471-2105-12-270
Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homologyCited by: 21
Author(s): Holger Pillmann, Klas Hatje, Florian Odronitz, Björn Hammesfahr, Martin Kollmar
Software Mentions: 1
Published: over 13 years ago
10.1093/database/baz139
Human Breathomics DatabaseCited by: 28
Author(s): Tsun-Cheng Kuo, Cheng En Tan, San-Yuan Wang, Olivia A. Lin, Bo Su, Ming-Tsung Hsu, Jessica Lin, Yu Cheng, Ciao Sin Chen, Yang Yu, Kuo Hsing Chen, Shu Lin, Chao‐Chi Ho, Ching‐Hua Kuo, Yufeng J. Tseng
Software Mentions: 1
Published: almost 5 years ago
10.1093/database/baaa057
Gliome database: a comprehensive web-based tool to access and analyze glia secretome dataCited by: 3
Author(s): Jong‐Heon Kim, Su-Hyeong Park, Jin Han, Pan‐Woo Ko, Dongseop Kwon, Kyoungho Suk
Software Mentions: 1
Published: almost 5 years ago
10.3389/fpls.2016.00878
PlantFuncSSR: Integrating First and Next Generation Transcriptomics for Mining of SSR-Functional Domains MarkersCited by: 3
Author(s): Gaurav Sablok, Antonio J. Pérez-Pulido, Thac Do, Tan Yew Seong, Carlos S. Casimiro-Soriguer, Nicola La Porta, Peter J. Ralph, Andrea Squartini, Antonio Muñoz‐Mérida, Jennifer Ann Harikrishna
Software Mentions: 1
Published: over 8 years ago
10.1186/1471-2105-15-290
MendeLIMS: a web-based laboratory information management system for clinical genome sequencingCited by: 13
Author(s): Susan M. Grimes, Hanlee P. Ji
Software Mentions: 1
Published: about 10 years ago
10.1186/s12913-018-3517-8
User-centered design and usability testing of RxMAGIC: a prescription management and general inventory control system for free clinic dispensariesCited by: 5
Author(s): Arielle M Fisher, Timothy M. Mtonga, Jeremy U. Espino, Lauren J. Jonkman, Sharon E. Connor, Nickie Cappella, Gerald P. Douglas
Software Mentions: 1
Published: about 6 years ago
10.1186/1756-0500-4-338
diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing dataCited by: 13
Author(s): Björn Hammesfahr, Florian Odronitz, Marcel Hellkamp, Martin Kollmar
Software Mentions: 1
Published: about 13 years ago
10.3390/bs9040041
Relationship Between Language Dominance and Stimulus-Stimulus or Stimulus-Response Inhibition in Uyghur-Chinese Bilinguals with an Investigation of Speed-Accuracy Trade-OffsCited by: 3
Author(s): Ruilin Wu, Esli Struys, Katja Lochtman
Software Mentions: 1
Published: over 5 years ago