Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Rails

https://packages.ecosyste.ms/registries/pypi.org/packages/Rails

Rails - python web framework
5 versions
Latest release: about 9 years ago
45 downloads last month

Papers Mentioning Rails 22

10.1371/journal.pcbi.1000589

A Quick Guide for Developing Effective Bioinformatics Programming Skills
Cited by: 45
Author(s): Joel T. Dudley, Atul J. Butte
Software Mentions: 7
Published: almost 15 years ago

The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associations
Cited by: 70
Author(s): HoJoon Lee, Jennifer Palm, Susan M. Grimes, Hanlee P. Ji
Software Mentions: 6
Published: about 9 years ago

10.1093/gigascience/giz059

A haplotype-resolved draft genome of the European sardine (Sardina pilchardus)
Cited by: 13
Author(s): Bruno Louro, Gianluca De Moro, Carlos M.E.V.R. Garcia, Cymon J. Cox, Ana Veríssimo, Stephen J. Sabatino, António M. Santos, Adelino V.M. Canário
Software Mentions: 3
Published: over 5 years ago

10.1186/s12859-015-0761-3

An automated real-time integration and interoperability framework for bioinformatics
Cited by: 8
Author(s): Pedro Lopes, José Luís Oliveira
Software Mentions: 3
Published: about 9 years ago

10.1186/1471-2164-11-538

AnnoTrack - a tracking system for genome annotation
Cited by: 9
Author(s): Felix Kokocinski, Jennifer Harrow, Tim Hubbard
Software Mentions: 2
Published: about 14 years ago

10.1186/1471-2105-13-240

The Ruby UCSC API: accessing the UCSC genome database using Ruby
Cited by: 3
Author(s): Hiroyuki Mishima, Jan Aerts, Toshiaki Katayama, Raoul Jean Pierre Bonnal, Koh-ichiro Yoshiura
Software Mentions: 2
Published: over 12 years ago

10.1186/1471-2105-15-S1-S13

QTREDS: a Ruby on Rails-based platform for omics laboratories
Cited by: 8
Author(s): Piergiorgio Palla, Gianfranco Frau, L Vargiu, Patricia Rodriguez-Tomé
Software Mentions: 2
Published: almost 11 years ago

10.1186/1471-2148-8-144

Exploring historical trends using taxonomic name metadata
Cited by: 5
Author(s): Indra Neil Sarkar, Ryan Schenk, Cathy N. Norton
Software Mentions: 2
Published: almost 17 years ago

10.1186/1471-2164-12-429

Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling data
Cited by: 47
Author(s): Gareth R. Howell, David O Walton, Benjamin L. King, Richard T. Libby, Simon W. M. John
Software Mentions: 2
Published: over 13 years ago

10.1371/journal.pone.0021088

A Flexible Approach for Highly Multiplexed Candidate Gene Targeted Resequencing
Cited by: 14
Author(s): Georges Natsoulis, John Bell, Hua Xu, Jason D. Buenrostro, Heather Ordonez, Susan M. Grimes, Daniel E. Newburger, Michael A. Jensen, Jacob M. Zahn, Nancy R. Zhang, Hanlee P. Ji
Software Mentions: 2
Published: over 13 years ago

10.1111/gtc.12053

<scp>FASTER</scp> : an unsupervised fully automated sleep staging method for mice
Cited by: 39
Author(s): Genshiro A. Sunagawa, Hiroyoshi Séi, Shigeki Shimba, Yoshihiro Urade, Hiroki R. Ueda
Software Mentions: 2
Published: over 11 years ago

10.3390/ijerph120606352

SaDA: From Sampling to Data Analysis—An Extensible Open Source Infrastructure for Rapid, Robust and Automated Management and Analysis of Modern Ecological High-Throughput Microarray Data
Cited by: 7
Author(s): Kumar Saurabh Singh, Dominique Thual, Roberto Spurio, Nicola Cannata
Software Mentions: 2
Published: over 9 years ago

10.1002/minf.201200037

The Internet as Scientific Knowledge Base: Navigating the Chem-Bio Space
Cited by: 6
Author(s): Katrin Stierand, Tim Harder, Thomas H. Marek, Matthias Hilbig, Christian Lemmen, Matthias Rarey
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-10-604

The other side of comparative genomics: genes with no orthologs between the cow and other mammalian species
Cited by: 9
Author(s): Raffaele Mazza, Francesco Strozzi, Andrea Caprera, Paolo Ajmone‐Marsan, J. L. Williams
Software Mentions: 1
Published: almost 16 years ago

10.1186/1471-2105-12-270

Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology
Cited by: 21
Author(s): Holger Pillmann, Klas Hatje, Florian Odronitz, Björn Hammesfahr, Martin Kollmar
Software Mentions: 1
Published: over 13 years ago

10.1093/database/baz139

Human Breathomics Database
Cited by: 28
Author(s): Tsun-Cheng Kuo, Cheng En Tan, San-Yuan Wang, Olivia A. Lin, Bo Su, Ming-Tsung Hsu, Jessica Lin, Yu Cheng, Ciao Sin Chen, Yang Yu, Kuo Hsing Chen, Shu Lin, Chao‐Chi Ho, Ching‐Hua Kuo, Yufeng J. Tseng
Software Mentions: 1
Published: almost 5 years ago

10.1093/database/baaa057

Gliome database: a comprehensive web-based tool to access and analyze glia secretome data
Cited by: 3
Author(s): Jong‐Heon Kim, Su-Hyeong Park, Jin Han, Pan‐Woo Ko, Dongseop Kwon, Kyoungho Suk
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpls.2016.00878

PlantFuncSSR: Integrating First and Next Generation Transcriptomics for Mining of SSR-Functional Domains Markers
Cited by: 3
Author(s): Gaurav Sablok, Antonio J. Pérez-Pulido, Thac Do, Tan Yew Seong, Carlos S. Casimiro-Soriguer, Nicola La Porta, Peter J. Ralph, Andrea Squartini, Antonio Muñoz‐Mérida, Jennifer Ann Harikrishna
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2105-15-290

MendeLIMS: a web-based laboratory information management system for clinical genome sequencing
Cited by: 13
Author(s): Susan M. Grimes, Hanlee P. Ji
Software Mentions: 1
Published: over 10 years ago

10.1186/s12913-018-3517-8

User-centered design and usability testing of RxMAGIC: a prescription management and general inventory control system for free clinic dispensaries
Cited by: 5
Author(s): Arielle M Fisher, Timothy M. Mtonga, Jeremy U. Espino, Lauren J. Jonkman, Sharon E. Connor, Nickie Cappella, Gerald P. Douglas
Software Mentions: 1
Published: over 6 years ago

10.1186/1756-0500-4-338

diArk 2.0 provides detailed analyses of the ever increasing eukaryotic genome sequencing data
Cited by: 13
Author(s): Björn Hammesfahr, Florian Odronitz, Marcel Hellkamp, Martin Kollmar
Software Mentions: 1
Published: over 13 years ago

10.3390/bs9040041

Relationship Between Language Dominance and Stimulus-Stimulus or Stimulus-Response Inhibition in Uyghur-Chinese Bilinguals with an Investigation of Speed-Accuracy Trade-Offs
Cited by: 3
Author(s): Ruilin Wu, Esli Struys, Katja Lochtman
Software Mentions: 1
Published: over 5 years ago