Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: RagTag

https://packages.ecosyste.ms/registries/pypi.org/packages/RagTag

Fast reference-guided genome assembly scaffolding
8 versions
Latest release: about 3 years ago
119 downloads last month

Papers Mentioning RagTag 7

Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (<i>Felis catus</i>) and Asian Leopard Cat (<i>Prionailurus bengalensis</i>)
Cited by: 22
Author(s): Kevin R. Bredemeyer, Andrew Harris, Gang Li, Li-Jun Zhao, Nicole M. Foley, Melody Roelke‐Parker, Stephen J. O’Brien, Leslie A. Lyons, Wesley C. Warren, William J. Murphy
Software Mentions: 4
Published: almost 4 years ago

10.3389/fgene.2021.671371

Chromosome-Scale Genome for a Red-Fruited, Perpetual Flowering and Runnerless Woodland Strawberry (Fragaria vesca)
Cited by: 6
Author(s): Elizabeth I. Alger, Adrian E. Platts, Sontosh K Deb, Xi Luo, Shujun Ou, Yao Cao, Kim E. Hummer, Xiong Zhang, Steven J. Knapp, Zhongchi Liu, Michael R. McKain, Patrick P. Edger
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2021.697567

Isolation and Characterization of High-Efficiency Rhizobia From Western Kenya Nodulating With Common Bean
Cited by: 9
Author(s): Clabe Wekesa, Alexandra C. U. Furch, Ralf Oelmüller
Software Mentions: 2
Published: about 3 years ago

10.1128/MRA.00077-21

Draft Genome Sequence of the Community-Associated Staphylococcus aureus Sequence Type 88 Strain LVP-7, Isolated from an Ocular Infection
Cited by: 0
Author(s): Savitha Nadig, Sneha Murthy, Muralidharan Vandanashree, Hosahalli Subramanya, B. Gopal, Shruthi S. Vembar
Software Mentions: 2
Published: almost 4 years ago

10.12688/f1000research.25556.1

The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy
Cited by: 1
Author(s): Toby Pirro, Stacy Pirro
Software Mentions: 1
Published: over 4 years ago

10.1128/MRA.00671-21

Genome Sequences of Mycobacterium Strains Recovered from Captive Elephants with Tuberculosis
Cited by: 0
Author(s): Evan P. Brenner, Syeda A. Hadi, Beth Harris, Suelee Robbe‐Austerman, Srinand Sreevatsan
Software Mentions: 1
Published: about 3 years ago

10.1128/MRA.00614-21

Genome Sequences of Two Mycobacterium tuberculosis Isolates from Asian Elephants in Nepal
Cited by: 3
Author(s): Sarad Paudel, Evan P. Brenner, Syeda A. Hadi, Yasuhiko Suzuki, Chie Nakajima, Toshio Tsubota, Kamal P. Gairhe, Bhagwan Maharjan, Srinand Sreevatsan
Software Mentions: 1
Published: about 3 years ago