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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: pypi: RagTag

https://packages.ecosyste.ms/registries/pypi.org/packages/RagTag

Fast reference-guided genome assembly scaffolding
8 versions
Latest release: over 3 years ago
119 downloads last month

Enhanced Analysis
Repository Activity:
Repository Owner: Michael Alonge (user)
Computational Biologist at Ohalo Genetics
README Analysis: DOI Found
Science Score: 75/100
Starting Score: 100 points
Bonuses:
  • +6 Science terms in README
    3 scientific terms found in README
  • +10 DOI references
    1 DOI references found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -10 No science terms in description
    No scientific terms found in description
  • -50 Non-science indicators
    2 non-scientific terms found
Very Likely Science (75)

Papers Mentioning RagTag 7

10.1093/jhered/esaa057
Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (<i>Felis catus</i>) and Asian Leopard Cat (<i>Prionailurus bengalensis</i>)
Cited by: 22
Author(s): Kevin R. Bredemeyer, Andrew Harris, Gang Li, Li-Jun Zhao, Nicole M. Foley, Melody Roelke‐Parker, Stephen J. O’Brien, Leslie A. Lyons, Wesley C. Warren, William J. Murphy
Software Mentions: 4
Published: over 4 years ago
10.3389/fgene.2021.671371
Chromosome-Scale Genome for a Red-Fruited, Perpetual Flowering and Runnerless Woodland Strawberry (Fragaria vesca)
Cited by: 6
Author(s): Elizabeth I. Alger, Adrian E. Platts, Sontosh K Deb, Xi Luo, Shujun Ou, Yao Cao, Kim E. Hummer, Xiong Zhang, Steven J. Knapp, Zhongchi Liu, Michael R. McKain, Patrick P. Edger
Software Mentions: 2
Published: about 4 years ago
10.3389/fmicb.2021.697567
Isolation and Characterization of High-Efficiency Rhizobia From Western Kenya Nodulating With Common Bean
Cited by: 9
Author(s): Clabe Wekesa, Alexandra C. U. Furch, Ralf Oelmüller
Software Mentions: 2
Published: almost 4 years ago
10.1128/MRA.00077-21
Draft Genome Sequence of the Community-Associated Staphylococcus aureus Sequence Type 88 Strain LVP-7, Isolated from an Ocular Infection
Cited by: 0
Author(s): Savitha Nadig, Sneha Murthy, Muralidharan Vandanashree, Hosahalli Subramanya, B. Gopal, Shruthi S. Vembar
Software Mentions: 2
Published: over 4 years ago
10.12688/f1000research.25556.1
The complete genome sequence of Toxicodendron radicans, Eastern Poison Ivy
Cited by: 1
Author(s): Toby Pirro, Stacy Pirro
Software Mentions: 1
Published: almost 5 years ago
10.1128/MRA.00671-21
Genome Sequences of Mycobacterium Strains Recovered from Captive Elephants with Tuberculosis
Cited by: 0
Author(s): Evan P. Brenner, Syeda A. Hadi, Beth Harris, Suelee Robbe‐Austerman, Srinand Sreevatsan
Software Mentions: 1
Published: almost 4 years ago
10.1128/MRA.00614-21
Genome Sequences of Two Mycobacterium tuberculosis Isolates from Asian Elephants in Nepal
Cited by: 3
Author(s): Sarad Paudel, Evan P. Brenner, Syeda A. Hadi, Yasuhiko Suzuki, Chie Nakajima, Toshio Tsubota, Kamal P. Gairhe, Bhagwan Maharjan, Srinand Sreevatsan
Software Mentions: 1
Published: almost 4 years ago