Projects: pypi: RCK
https://packages.ecosyste.ms/registries/pypi.org/packages/RCK
A tool for (R)econstruction of (C)ancer (K)aryotypes (both clone- and haplotype-specific)
3 versions
Latest release: over 5 years ago
12 downloads last month
Enhanced Analysis
Educational Contributors:
[email protected]
[email protected]
Repository Activity:
Repository Owner:
Sergey Aganezov (user)
Husband, Son, Ph.D., Genomic Applications Scientist @nanoporetech. I'm fascinated about everything, that has something unknown in it! Views are my own.
Husband, Son, Ph.D., Genomic Applications Scientist @nanoporetech. I'm fascinated about everything, that has something unknown in it! Views are my own.
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+40
Educational commit emails
2 contributors with educational email addresses
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning RCK 9
10.1371/journal.pone.0210679
Fecal microbiota dysbiosis in macaques and humans within a shared environmentCited by: 9
Author(s): Erica T. Grant, Randall C. Kyes, Pensri Kyes, Pauline Trinh, Vickie Ramirez, Tawatchai Tanee, Porntip Pinlaor, Rungtiwa Dangtakot, Peter Rabinowitz
Software Mentions: 3
Published: about 6 years ago
10.1038/s41422-021-00476-y
Predicting dynamic cellular protein–RNA interactions by deep learning using in vivo RNA structuresCited by: 55
Author(s): Lei Sun, Kui Xu, Wenze Huang, Yucheng Yang, Pan Li, Lei Tang, Tuanlin Xiong, Qiangfeng Cliff Zhang
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pcbi.1008925
Global importance analysis: An interpretability method to quantify importance of genomic features in deep neural networksCited by: 39
Author(s): Peter K. Koo, Antonio Majdandzic, Matthew Ploenzke, Praveen Anand, Steffan B. Paul
Software Mentions: 2
Published: about 4 years ago
10.1371/journal.pcbi.1007283
Integrating thermodynamic and sequence contexts improves protein-RNA binding predictionCited by: 25
Author(s): Yufeng Su, Ying Luo, Xiaoming Zhao, Yang Liu, Jian Peng
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12859-019-3208-4
Recovering rearranged cancer chromosomes from karyotype graphsCited by: 5
Author(s): Sergey Aganezov, Ilya Zban, Vitaly Aksenov, Nikita Alexeev, Michael C. Schatz
Software Mentions: 1
Published: over 5 years ago
10.3390/polym13020287
Conversion of Wheat Bran to Xylanases and Dye Adsorbent by Streptomyces thermocarboxydusCited by: 11
Author(s): Thi Ngoc Tran, Chien Thang Doan, San-Lang Wang
Software Mentions: 1
Published: over 4 years ago
10.1186/s12859-017-1704-y
Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15Cited by: 9
Author(s): Shermin Pei, Betty L. Slinger, Michelle M. Meyer
Software Mentions: 1
Published: about 8 years ago
10.1186/s12859-018-2091-8
Inferring RNA sequence preferences for poorly studied RNA-binding proteins based on co-evolutionCited by: 6
Author(s): Shu Yang, Junwen Wang, Raymond T. Ng
Software Mentions: 1
Published: over 7 years ago
10.1002/1873-3468.13116
<scp>RNA</scp>‐protein interactions in an unstructured contextCited by: 49
Author(s): Bojan Žagrović, Lukas Bartonek, Anton A. Polyansky
Software Mentions: 1
Published: about 7 years ago