Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: RCK

https://packages.ecosyste.ms/registries/pypi.org/packages/RCK

A tool for (R)econstruction of (C)ancer (K)aryotypes (both clone- and haplotype-specific)
3 versions
Latest release: about 5 years ago
12 downloads last month

Papers Mentioning RCK 9

10.1371/journal.pone.0210679
Fecal microbiota dysbiosis in macaques and humans within a shared environment
Cited by: 9
Author(s): Erica T. Grant, Randall C. Kyes, Pensri Kyes, Pauline Trinh, Vickie Ramirez, Tawatchai Tanee, Porntip Pinlaor, Rungtiwa Dangtakot, Peter Rabinowitz
Software Mentions: 3
Published: over 5 years ago
10.1038/s41422-021-00476-y
Predicting dynamic cellular protein–RNA interactions by deep learning using in vivo RNA structures
Cited by: 55
Author(s): Lei Sun, Kui Xu, Wenze Huang, Yucheng Yang, Pan Li, Lei Tang, Tuanlin Xiong, Qiangfeng Cliff Zhang
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pcbi.1008925
Global importance analysis: An interpretability method to quantify importance of genomic features in deep neural networks
Cited by: 39
Author(s): Peter K. Koo, Antonio Majdandzic, Matthew Ploenzke, Praveen Anand, Steffan B. Paul
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pcbi.1007283
Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction
Cited by: 25
Author(s): Yufeng Su, Ying Luo, Xiaoming Zhao, Yang Liu, Jian Peng
Software Mentions: 2
Published: about 5 years ago
10.1186/s12859-019-3208-4
Recovering rearranged cancer chromosomes from karyotype graphs
Cited by: 5
Author(s): Sergey Aganezov, Ilya Zban, Vitaly Aksenov, Nikita Alexeev, Michael C. Schatz
Software Mentions: 1
Published: almost 5 years ago
10.3390/polym13020287
Conversion of Wheat Bran to Xylanases and Dye Adsorbent by Streptomyces thermocarboxydus
Cited by: 11
Author(s): Thi Ngoc Tran, Chien Thang Doan, San-Lang Wang
Software Mentions: 1
Published: almost 4 years ago
10.1186/s12859-017-1704-y
Recognizing RNA structural motifs in HT-SELEX data for ribosomal protein S15
Cited by: 9
Author(s): Shermin Pei, Betty L. Slinger, Michelle M. Meyer
Software Mentions: 1
Published: over 7 years ago
10.1186/s12859-018-2091-8
Inferring RNA sequence preferences for poorly studied RNA-binding proteins based on co-evolution
Cited by: 6
Author(s): Shu Yang, Junwen Wang, Raymond T. Ng
Software Mentions: 1
Published: over 6 years ago
10.1002/1873-3468.13116
<scp>RNA</scp>‐protein interactions in an unstructured context
Cited by: 49
Author(s): Bojan Žagrović, Lukas Bartonek, Anton A. Polyansky
Software Mentions: 1
Published: over 6 years ago