pypi: RASP | Projects | Ecosyste.ms: Papers

10.1186/s12862-015-0516-9

Biogeographic history and high-elevation adaptations inferred from the mitochondrial genome of Glyptosternoid fishes (Sisoridae, Siluriformes) from the southeastern Tibetan Plateau
Cited by: 32
Author(s): Xiuhui Ma, Jingliang Kang, Weitao Chen, Chuanjiang Zhou, Shunping He
Software Mentions: 1
Published: over 8 years ago

10.1186/s12862-018-1286-y

Historical biogeography reveals new independent evolutionary lineages in the Pantosteus plebeius-nebuliferus species-group (Actinopterygii: Catostomidae)
Cited by: 8
Author(s): Diushi Keri Corona-Santiago, Omár Domínguez-Domínguez, Llanet Tovar-Mora, José Ramón Pardos-Blas, Yvonne Herrerías‐Diego, Rodolfo Pérez‐Rodríguez, Ignacio Doadrio
Software Mentions: 1
Published: over 5 years ago

10.1186/s12862-015-0449-3

Systematics and historical biogeography of the old world butterfly subtribe Mycalesina (Lepidoptera: Nymphalidae: Satyrinae)
Cited by: 42
Author(s): Kwaku Aduse‐Poku, Oskar Brattström, Ullasa Kodandaramaiah, David C. Lees, Paul M. Brakefield, Niklas Wahlberg
Software Mentions: 1
Published: almost 9 years ago

10.1186/1471-2148-12-108

Evolution and loss of long-fringed petals: a case study using a dated phylogeny of the snake gourds, Trichosanthes (Cucurbitaceae)
Cited by: 22
Author(s): Hugo de Boer, Hanno Schaefer, Mats Thulin, Susanne S. Renner
Software Mentions: 1
Published: over 12 years ago

10.1186/s12864-021-07533-1

Mitogenomic phylogeny of Callithrix with special focus on human transferred taxa
Cited by: 7
Author(s): Joanna Malukiewicz, Reed A. Cartwright, Nelson H. A. Curi, Jorge Abdala Dergam, Claudia S Igayara, Sílvia Bahadian Moreira, Camila Molina, Patrícia Avello Nicola, Angela Noll, Marcelo Passamani, Luiz Cézar Machado Pereira, Alcides Pissinatti, Carlos R. Ruiz‐Miranda, Daniel L. Silva, Anne C. Stone, Dietmar Zinner, Christian Roos
Software Mentions: 1
Published: about 3 years ago

10.1186/s12877-018-0843-y

Medication review versus usual care to improve drug therapies in older inpatients not admitted to geriatric wards: a quasi-experimental study (RASP-IGCT)
Cited by: 17
Author(s): Lorenz Van der Linden, Julie Hias, Lisa Dreessen, Koen Milisen, Johan Flamaing, Isabel Spriet, Jos Tournoy
Software Mentions: 1
Published: almost 6 years ago

10.1186/1472-6947-12-S1-S4

Detecting modification of biomedical events using a deep parsing approach
Cited by: 4
Author(s): Andrew MacKinlay, David Martínez, Timothy Baldwin
Software Mentions: 1
Published: about 12 years ago

10.1186/s12870-015-0560-z

Biogeography of the Phalaenopsis amabilis species complex inferred from nuclear and plastid DNAs
Cited by: 11
Author(s): Ching‐Chih Tsai, Chih-Hsing Chou, Hao Ven Wang, Ya-Zhu Ko, Tzen‐Yuh Chiang, Yu Chung Chiang
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12870-019-2147-6

Plastome phylogenomics, biogeography, and clade diversification of Paris (Melanthiaceae)
Cited by: 33
Author(s): Yunheng Ji, Lifang Yang, Mark W. Chase, Changkun Liu, Zhao Yang, Jin Yang, Jun‐Bo Yang, Ting‐Shuang Yi
Software Mentions: 1
Published: over 4 years ago

10.1186/s12870-015-0540-3

Origin and evolution of Petrocosmea (Gesneriaceae) inferred from both DNA sequence and novel findings in morphology with a test of morphology-based hypotheses
Cited by: 17
Author(s): Zhen Qiu, Yonglin Lu, Chaoqun Li, Yang Dong, James F. Smith, Yin-Zheng Wang
Software Mentions: 1
Published: almost 9 years ago

10.3758/s13428-013-0420-4

The Centre for Speech, Language and the Brain (CSLB) concept property norms
Cited by: 117
Author(s): Barry Devereux, Lorraine K. Tyler, Jeroen Geertzen, Billi Randall
Software Mentions: 1
Published: over 10 years ago

10.1093/bioinformatics/btt441

WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures
Cited by: 7
Author(s): Tomás Norambuena, Jorge F. Cares, Emidio Capriotti, Francisco S. Melo
Software Mentions: 1
Published: almost 11 years ago

10.1080/23802359.2021.1901620

Diversification and colonization processes in Gobioidei predicted based on mitochondrial 12S rRNA with focusing on Oxudercidae
Cited by: 0
Author(s): Hyung‐Bae Jeon, Jumin Jun, Seung-Ho Choi, Ho Young Suk
Software Mentions: 1
Published: about 3 years ago

10.1007/s00345-021-03780-9

TURPxit or not: contemporary management options for benign prostatic obstruction
Cited by: 0
Author(s): Thomas Herrmann, Vincent Misraï, Fernando Gómez Sancha, Thorsten Bach
Software Mentions: 1
Published: almost 3 years ago

10.1186/s40851-021-00172-0

New Indomalayan Nebularmis species (Heterotardigrada: Echiniscidae) provoke a discussion on its intrageneric diversity
Cited by: 6
Author(s): Piotr Gąsiorek, Katarzyna Vončina, Joanna A. Ciosek, Mariana Veloso, Paulo Fontoura, Łukasz Michalczyk
Software Mentions: 1
Published: about 3 years ago

10.7717/peerj.1744

Evolution ofPhilodendron(Araceae) species in Neotropical biomes
Cited by: 15
Author(s): Letícia Loss-Oliveira, Cássia Mônica Sakuragui, Maria de Lourdes Soares, Carlos G. Schrago
Software Mentions: 1
Published: about 8 years ago

10.7717/peerj.4404

Phylogeny, time divergence, and historical biogeography of the South AmericanLiolaemus alticolor-bibroniigroup (Iguania: Liolaemidae)
Cited by: 13
Author(s): Sabrina Noelia Portelli, Andrés Sebastián Quinteros
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.3835

Unraveling the diversification history of grasshoppers belonging to the “Trimerotropis pallidipennis”(Oedipodinae: Acrididae) species group: a hotspot of biodiversity in the Central Andes
Cited by: 9
Author(s): Noelia V. Guzmán, Silvia Pietrokovsky, Marı́a Marta Cigliano, Viviana A. Confalonieri
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.6476

Rapid ecological specialization despite constant population sizes
Cited by: 1
Author(s): Andrinajoro R Rakotoarivelo, Paul O’Donoghue, Michael William Bruford, Yoshan Moodley
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.6320

The complete chloroplast genomes of three Betulaceae species: implications for molecular phylogeny and historical biogeography
Cited by: 26
Author(s): Zhen Yang, Guixi Wang, Qinghua Ma, Wenxu Ma, Lisong Liang, Tengteng Zhao
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.9552

Plastid genomics of Nicotiana (Solanaceae): insights into molecular evolution, positive selection and the origin of the maternal genome of Aztec tobacco (Nicotiana rustica)
Cited by: 40
Author(s): Furrukh Mehmood, Abdullah Abdullah, Zartasha Ubaid, Iram Shahzadi, Ibrar Ahmed, Mohammad Tahir Waheed, Péter Poczai, Bushra Mirza
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.4044

Phylogeographic and population insights of the Asian common toad (Bufo gargarizans) in Korea and China: population isolation and expansions as response to the ice ages
Cited by: 28
Author(s): Amaël Borzée, Joana L. Santos, Santiago Sánchez‐Ramírez, Yoonhyuk Bae, Kyongman Heo, Yikweon Jang, Michael J. Jowers
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.6511

The Malacca Strait separates distinct faunas of poorly-flying Cautires net-winged beetles
Cited by: 11
Author(s): Alice Jiruskova, Michal Motyka, Matěj Boček, Ladislav Bocák
Software Mentions: 1
Published: about 5 years ago

10.7717/peerj.9411

A little frog leaps a long way: compounded colonizations of the Indian Subcontinent discovered in the tiny Oriental frog genus Microhyla (Amphibia: Microhylidae)
Cited by: 28
Author(s): Vladislav A. Gorin, Evgeniya N. Solovyeva, Mahmudul Hasan, Hisanori Okamiya, Suranjan Karunarathna, Parinya Pawangkhanant, Anslem de Silva, Watinee Juthong, Konstantin D. Milto, Nguyen Thanh Luan, Chatmongkon Suwannapoom, Alexander Haas, David P. Bickford, Indraneil Das, Nikolay A. Poyarkov
Software Mentions: 1
Published: almost 4 years ago

10.7717/peerj.3995

The reanalysis of biogeography of the Asian tree frog,Rhacophorus(Anura: Rhacophoridae): geographic shifts and climatic change influenced the dispersal process and diversification
Cited by: 13
Author(s): Tao Pan, Yanan Zhang, Hui Wang, Jun Wu, Xing Kang, Lifu Qian, Jinyun Chen, Dingqi Rao, Jianping Jiang, Baowei Zhang
Software Mentions: 1
Published: over 6 years ago

10.7717/peerj.8691

A biogeographic framework of octopod species diversification: the role of the Isthmus of Panama
Cited by: 16
Author(s): Françoise D. Lima, Jan M. Strugnell, Tatiana S. Leite, Sergio Maia Queiroz Lima
Software Mentions: 1
Published: about 4 years ago

10.7717/peerj.11162

Phylogenomic analyses reveal a Gondwanan origin and repeated out of India colonizations into Asia by tarantulas (Araneae: Theraphosidae)
Cited by: 5
Author(s): Saoirse Foley, Henrik Krehenwinkel, Dong-Qiang Cheng, William H. Piel
Software Mentions: 1
Published: about 3 years ago

10.7717/peerj.1422

Spintharus flavidusin the Caribbean—a 30 million year biogeographical history and radiation of a ‘widespread species’
Cited by: 28
Author(s): Austin Dziki, Greta J. Binford, Jonathan A. Coddington, Ingi Agnarsson
Software Mentions: 1
Published: over 8 years ago

10.3390/plants9091100

The East Asian Winter Monsoon Acts as a Major Selective Factor in the Intraspecific Differentiation of Drought-Tolerant Nitraria tangutorum in Northwest China
Cited by: 7
Author(s): Huajun Yin, Lirong Wang, Yong Shi, Qian Chen, Huakun Zhou, Wenying Wang, Xiaofei Ma, Lam‐Son Phan Tran, Benyin Zhang
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pcbi.1006342

Accurate calculation of side chain packing and free energy with applications to protein molecular dynamics
Cited by: 26
Author(s): John Jumper, Nabil F. Faruk, Karl F. Freed, Tobin R. Sosnick
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0028035

Mountain Refugia Play a Role in Soil Arthropod Speciation on Madagascar: A Case Study of the Endemic Giant Fire-Millipede Genus Aphistogoniulus
Cited by: 19
Author(s): Thomas Wesener‍, Michael J. Raupach, Peter Decker
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0174825

Speciation in progress? A phylogeographic study among populations of Hemitrichia serpula (Myxomycetes)
Cited by: 25
Author(s): Nikki Heherson A. Dagamac, Carlos Rojas, Yuri K. Novozhilov, G. Moreno, Rabea Schlueter, Martin Schnittler
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0164902

Historical Biogeography of Five Characidium Fish Species: Dispersal from the Amazon Paleobasin to Southeastern South America
Cited by: 9
Author(s): Daniel Poveda-Martínez, Chrystian C. Sosa, Katherine Chacón-Vargas, Víctor Hugo García-Merchán
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0171405

Phylogeny and biogeography of the amphi-Pacific genus Aphananthe
Cited by: 12
Author(s): Meiqing Yang, Li D, Jun Wen, Ting‐Shuang Yi
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0117171

Does the Arcto-Tertiary Biogeographic Hypothesis Explain the Disjunct Distribution of Northern Hemisphere Herbaceous Plants? The Case of Meehania (Lamiaceae)
Cited by: 43
Author(s): Tao Deng, Ze‐Long Nie, Bryan T. Drew, Sergei Volis, Changkyun Kim, Chun‐Lei Xiang, Jianwen Zhang, Yuehua Wang, Hang Sun
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0185301

The first hyaenodont from the late Oligocene Nsungwe Formation of Tanzania: Paleoecological insights into the Paleogene-Neogene carnivore transition
Cited by: 22
Author(s): Matthew R. Borths, Nancy J. Stevens
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0077156

A Mitochondrial Phylogeny and Biogeographical Scenario for Asiatic Water Shrews of the Genus Chimarrogale: Implications for Taxonomy and Low-Latitude Migration Routes
Cited by: 16
Author(s): Shouli Yuan, Xuelong Jiang, Zhenji Li, Kai He, Masashi Harada, Tatsuo Oshida, Liang‐Kong Lin
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0201251

Phylogeography of the gall-inducing micromoth Eucecidoses minutanus Brèthes (Cecidosidae) reveals lineage diversification associated with the Neotropical Peripampasic Orogenic Arc
Cited by: 7
Author(s): Gabriela Thomaz da Silva, Germán San Blas, Willian Thomaz Peçanha, Gilson R. P. Moreira, Gislene Lopes Gonçalves
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0144711

The Historical Speciation of Mauremys Sensu Lato: Ancestral Area Reconstruction and Interspecific Gene Flow Level Assessment Provide New Insights
Cited by: 11
Author(s): Huaxing Zhou, Yuan Jiang, Liuwang Nie, Huazong Yin, Haifeng Li, Xianmei Dong, Fei Zhao, Huanhuan Zhang, Youguang Pu, Zhenfeng Huang, Jiao-Lian Song, Entao Sun
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0123228

Spatiotemporal Evolution of Calophaca (Fabaceae) Reveals Multiple Dispersals in Central Asian Mountains
Cited by: 6
Author(s): Mingli Zhang, Zhibin Wen, Peter W. Fritsch, Stewart C. Sanderson
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0205840

Phylogeny, biogeography and taxonomic re-assessment of Multifurca (Russulaceae, Russulales) using three-locus data
Cited by: 10
Author(s): Xianghua Wang, Roy E. Halling, Valérie Hofstetter, Teresa Lebel, Bart Buyck
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0160051

Phylogeography of the Subgenus Drosophila (Diptera: Drosophilidae): Evolutionary History of Faunal Divergence between the Old and the New Worlds
Cited by: 41
Author(s): Hiroyuki F. Izumitani, Yohei Kusaka, Shigeyuki Koshikawa, Masanori J. Toda, Takahiko Katoh
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0123855

Molecular Phylogeny Reveals High Diversity, Geographic Structure and Limited Ranges in Neotenic Net-Winged Beetles Platerodrilus (Coleoptera: Lycidae)
Cited by: 25
Author(s): Michal Mášek, Vaclav Palata, Timothy C. Bray, Ladislav Bocák
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0228245

SPECS: Integration of side-chain orientation and global distance-based measures for improved evaluation of protein structural models
Cited by: 5
Author(s): Rahul Alapati, Md Hossain Shuvo, Debswapna Bhattacharya
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0101975

Phylogeny and Evolution of Pharmacophagy in Tiger Moths (Lepidoptera: Erebidae: Arctiinae)
Cited by: 49
Author(s): Jennifer M. Zaspel, Susan J. Weller, Charles T. Wardwell, Reza Zahiri, Niklas Wahlberg
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0111157

An Efficient ERP-Based Brain-Computer Interface Using Random Set Presentation and Face Familiarity
Cited by: 90
Author(s): Seul-Ki Yeom, Siamac Fazli, Klaus‐Robert Müller, Seong–Whan Lee
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0202161

Approximate sparse spectral clustering based on local information maintenance for hyperspectral image classification
Cited by: 1
Author(s): Qing Yan, Yun Ding, Jingjing Zhang, Lina Xun, Chun-Hou Zheng
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0117971

Nuclear Ribosomal ITS Functional Paralogs Resolve the Phylogenetic Relationships of a Late-Miocene Radiation Cycad Cycas (Cycadaceae)
Cited by: 28
Author(s): Long-Qian Xiao, Michael Möller
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0037567

DNA Sequence Analyses Reveal Abundant Diversity, Endemism and Evidence for Asian Origin of the Porcini Mushrooms
Cited by: 77
Author(s): Bang Feng, Jianping Xu, Gang Wu, Nian-Kai Zeng, Yan Chun Li, Tolgor Bau, Gerhard Kost, Zhu L. Yang
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0148380

A New Miocene-Divergent Lineage of Old World Racer Snake from India
Cited by: 15
Author(s): Zeeshan A. Mirza, Raju Vyas, Harshil Patel, Jaydeep Maheta, Rajesh V. Sanap
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0118208

Molecular Evidence for an Old World Origin of Galapagos and Caribbean Band-Winged Grasshoppers (Acrididae: Oedipodinae: Sphingonotus)
Cited by: 8
Author(s): Martin Husemann, Jan Christian Habel, Suk Namkung, Axel Hochkirch, Daniel Otte, Patrick D. Danley
Software Mentions: 1
Published: over 9 years ago

Projects: pypi: RASP

Papers Mentioning RASP 251