Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: RASP

https://packages.ecosyste.ms/registries/pypi.org/packages/RASP

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Latest release: about 4 years ago
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Papers Mentioning RASP 251

10.1186/s12862-020-01717-1
Climatic and topographic changes since the Miocene influenced the diversification and biogeography of the tent tortoise (Psammobates tentorius) species complex in Southern Africa
Cited by: 7
Author(s): Zhongning Zhao, Neil Heideman, Phillip Armand Bester, Adriaan Jordaan, Margaretha D. Hofmeyr
Software Mentions: 18
Published: about 4 years ago
10.1111/mec.14523
Shifts in diversification rates and host jump frequencies shaped the diversity of host range among <i>Sclerotiniaceae</i> fungal plant pathogens
Cited by: 39
Author(s): Olivier Navaud, Adelin Barbacci, Andrew Taylor, John P. Clarkson, Sylvain Raffaele
Software Mentions: 8
Published: over 6 years ago
10.1371/journal.pone.0100687
In the Wake of Invasion: Tracing the Historical Biogeography of the South American Cricetid Radiation (Rodentia, Sigmodontinae)
Cited by: 65
Author(s): Rafael N. Leite, Sergios‐Orestis Kolokotronis, Francisca Cunha Almeida, Fernanda P. Werneck, Donald E. Rogers, Marcelo Weksler
Software Mentions: 8
Published: over 10 years ago
10.1186/s12859-019-3099-4
DIRECT: RNA contact predictions by integrating structural patterns
Cited by: 14
Author(s): Yiren Jian, Xiaonan Wang, Jaidi Qiu, Huiwen Wang, Zhichao Liu, Yunjie Zhao, Chen Zeng
Software Mentions: 7
Published: about 5 years ago
10.3389/fpls.2020.582422
Phylogenomics of the Andean Tetraploid Clade of the American Amaryllidaceae (Subfamily Amaryllidoideae): Unlocking a Polyploid Generic Radiation Abetted by Continental Geodynamics
Cited by: 7
Author(s): Alan W. Meerow, Elliot M. Gardner, Kyoko Nakamura
Software Mentions: 7
Published: about 4 years ago
10.1038/s41598-021-85016-9
Comparative analysis of machine learning algorithms for computer-assisted reporting based on fully automated cross-lingual RadLex mappings
Cited by: 4
Author(s): Máté E. Maros, Chang Gyu Cho, Andreas Junge, Benedikt Kämpgen, Victor Saase, Fabian Siegel, Frederik Trinkmann, Thomas Ganslandt, Christoph Groden, Holger Wenz
Software Mentions: 7
Published: over 3 years ago
10.1371/journal.pcbi.1004763
Ancestral Reconstruction
Cited by: 116
Author(s): Jeffrey B. Joy, Richard Liang, Rosemary M. McCloskey, Thuy Nguyen, Art F. Y. Poon
Software Mentions: 6
Published: over 8 years ago
10.1371/journal.pone.0187329
Pleistocene climatic oscillations in Neotropical open areas: Refuge isolation in the rodent Oxymycterus nasutus endemic to grasslands
Cited by: 19
Author(s): Willian Thomaz Peçanha, Sérgio Luiz Althoff, Daniel Galiano, Fernando Marques Quintela, Renan Maestri, Gislene Lopes Gonçalves, Thales Renato Ochotorena de Freitas
Software Mentions: 5
Published: almost 7 years ago
10.3389/fgene.2014.00362
Patterns of diversification amongst tropical regions compared: a case study in Sapotaceae
Cited by: 31
Author(s): Kate Armstrong, Graham N. Stone, James A. Nicholls, Eugenio Valderrama, Arne A. Anderberg, Jenny E. E. Smedmark, Laurent Gautier, Yamama Naciri, Richard I. Milne, James E. Richardson
Software Mentions: 5
Published: almost 10 years ago
10.1002/ece3.6008
The uplift of the Qinghai–Tibet Plateau and glacial oscillations triggered the diversification of <i>Tetraogallus</i> (Galliformes, Phasianidae)
Cited by: 5
Author(s): Li Ding, Jicheng Liao, Naifa Liu
Software Mentions: 4
Published: almost 5 years ago
10.1038/s41598-021-89364-4
Diversification of the Balloon bushcrickets (Orthoptera, Hexacentrinae, Aerotegmina) in the East African mountains
Cited by: 3
Author(s): Beata Grzywacz, Elżbieta Warchałowska‐Śliwa, Maciej Kociński, Klaus‐Gerhard Heller, Claudia Hemp
Software Mentions: 4
Published: over 3 years ago
10.1186/s12862-018-1212-3
A North American stem turaco, and the complex biogeographic history of modern birds
Cited by: 26
Author(s): Daniel J. Field, Allison Y. Hsiang
Software Mentions: 4
Published: over 6 years ago
10.1111/mec.12840
Niche divergence promotes rapid diversification of East African sky island white-eyes (Aves: Zosteropidae)
Cited by: 46
Author(s): Siobhan C. Cox, Robert Prŷs-Jones, Jan Christian Habel, Bernard Amakobe, Julia J. Day
Software Mentions: 4
Published: over 10 years ago
10.1186/s12862-021-01813-w
Historical biogeography, systematics, and integrative taxonomy of the non-Ethiopian speckled pelage brush-furred rats (Lophuromys flavopunctatus group)
Cited by: 6
Author(s): Kenneth Otieno Onditi, Terrence C. Demos, Julian Kerbis Peterhans, Zhongzheng Chen, Josef Bryja, Leonid A. Lavrenchenko, Simon Musila, Erik Verheyen, Frederik Van de Perre, Benjamin Dudu Akaibe, Noé U. de la Sancha, Xuelong Jiang
Software Mentions: 4
Published: over 3 years ago
10.3389/fpls.2021.648026
Clarifying Recent Adaptive Diversification of the Chrysanthemum-Group on the Basis of an Updated Multilocus Phylogeny of Subtribe Artemisiinae (Asteraceae: Anthemideae)
Cited by: 10
Author(s): Chen Shen, Chujie Zhang, Jie Chen, Yanping Guo
Software Mentions: 4
Published: over 3 years ago
10.1186/s13071-018-2933-2
Aedes aegypti in the Black Sea: recent introduction or ancient remnant?
Cited by: 37
Author(s): Panayiota Kotsakiozi, Andrea Gloria‐Soria, Francis Schaffner, Vincent Robert, Jeffrey R. Powell
Software Mentions: 4
Published: over 6 years ago
10.1186/s12864-019-6007-4
Origin and diversification of Xanthomonas citri subsp. citri pathotypes revealed by inclusive phylogenomic, dating, and biogeographic analyses
Cited by: 30
Author(s): José Salvatore Leister Patané, Joaquim Martins, Luiz Thibério Rangel, José Belasque, Luciano Antônio Digiampietri, Agda Paula Facincani, Rafael Marini Ferreira, Fabrício José Jaciani, Yunzeng Zhang, Alessandro M. Varani, Nalvo F. Almeida, Nian Wang, Jesus Aparecido Ferro, Leandro Márcio Moreira, João Carlos Setúbal
Software Mentions: 4
Published: about 5 years ago
10.1038/s42003-020-01419-w
Distortion of the bilayer and dynamics of the BAM complex in lipid nanodiscs
Cited by: 27
Author(s): M.G. Iadanza, Bob Schiffrin, Paul White, Matthew Watson, Jim E. Horne, A.J. Higgins, Antonio N. Calabrese, David J. Brockwell, Roman Tůma, Antreas C. Kalli, Sheena E. Radford, Neil A. Ranson
Software Mentions: 4
Published: almost 4 years ago
10.7717/peerj.4384
Phylogenetic surveys on the newt genus <i>Tylototriton sensu lato</i> (Salamandridae, Caudata) reveal cryptic diversity and novel diversification promoted by historical climatic shifts
Cited by: 15
Author(s): Bin Wang, Kanto Nishikawa, Masafumi Matsui, Truong Q. Nguyen, Feng Xie, Cheng Li, Janak Raj Khatiwada, Baowei Zhang, Gong Dajie, Yunming Mo, Gang Wei, Xiaohong Chen, Youhui Shen, Daode Yang, Rongchuan Xiong, Jianping Jiang
Software Mentions: 3
Published: over 6 years ago
10.1186/s12862-019-1416-1
Clade-age-dependent diversification under high species turnover shapes species richness disparities among tropical rainforest lineages of Bulbophyllum (Orchidaceae)
Cited by: 26
Author(s): Alexander Gamisch, Hans Peter Comes
Software Mentions: 3
Published: over 5 years ago
10.1038/s42003-018-0063-1
Transient antibody-antigen interactions mediate the strain-specific recognition of a conserved malaria epitope
Cited by: 6
Author(s): Bankala Krishnarjuna, Toshihiko Sugiki, Rodrigo Morales, Jeffrey Seow, Toshimichi Fujiwara, Karyn L. Wilde, Raymond S. Norton, Christopher A. MacRaild
Software Mentions: 3
Published: over 6 years ago
10.1038/s41598-021-84910-6
Phylogeography and morphological evolution of Pseudechiniscus (Heterotardigrada: Echiniscidae)
Cited by: 13
Author(s): Piotr Gąsiorek, Katarzyna Vončina, Krzysztof Zając, Łukasz Michalczyk
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-017-03107-y
Phylogenetic evidence that both ancient vicariance and dispersal have contributed to the biogeographic patterns of anchialine cave shrimps
Cited by: 29
Author(s): José A. Jurado‐Rivera, Joan Pons, Fernando Álvarez, Alejandro Botello, W. F. Humphreys, Timothy J. Page, Thomas M. Iliffe, Endre Willassen, Kenneth Meland, Carlos Juan, Damià Jaume
Software Mentions: 3
Published: over 7 years ago
10.1186/s12862-021-01764-2
New Guinean orogenic dynamics and biota evolution revealed using a custom geospatial analysis pipeline
Cited by: 10
Author(s): Emmanuel F. A. Toussaint, L.B. White, Helena Shaverdo, Athena Lam, Suriani Surbakti, Rawati Panjaitan, Bob Sumoked, Thomas von Rintelen, Katayo Sagata, Michael Balke
Software Mentions: 3
Published: over 3 years ago
10.1186/s12862-015-0358-5
The origin of snakes: revealing the ecology, behavior, and evolutionary history of early snakes using genomics, phenomics, and the fossil record
Cited by: 167
Author(s): Allison Y. Hsiang, Daniel J. Field, Timothy H. Webster, Adam D.B. Behlke, Matthew Davis, Rachel A. Racicot, Jacques A. Gauthier
Software Mentions: 3
Published: over 9 years ago
10.1002/ece3.8003
Phylogeographic structure of the dwarf snakehead ( <i>Channa gachua</i> ) around Gulf of Tonkin: Historical biogeography and pronounced effects of sea‐level changes
Cited by: 9
Author(s): Junjie Wang, Chao Li, Jiaqi Chen, Jinjin Jin, Shuying Jiang, Lei Yan, Hung‐Du Lin, Jun Zhao
Software Mentions: 3
Published: over 3 years ago
10.1186/s12862-017-1038-4
Historical biogeography and ecological niche modelling of the Asimina-Disepalum clade (Annonaceae): role of ecological differentiation in Neotropical-Asian disjunctions and diversification in Asia
Cited by: 13
Author(s): Pui-Sze Li, Daniel C. Thomas, Richard M. Saunders
Software Mentions: 3
Published: over 7 years ago
10.12688/f1000research.20559.1
A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community)
Cited by: 11
Author(s): Christine A. Orengo, Sameer Velankar, Shoshana J. Wodak, Vincent Zoete, Alexandre M. J. J. Bonvin, Arne Elofsson, K. Anton Feenstra, Dietland L. Gerloff, Thomas Hamelryck, John M. Hancock, Manuela Helmer‐Citterich, Modesto Orozco, Anastassis Perrakis, Matthias Rarey, Cláudio M. Soares, Joel L. Sussman, Janet M. Thornton, Pierre Tufféry, Gábor Tusnády, R.K. Wierenga, Tiina A. Salminen, Bohdan Schneider
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0178389
Insight into Central Asian flora from the Cenozoic Tianshan montane origin and radiation of Lagochilus (Lamiaceae)
Cited by: 8
Author(s): Mingli Zhang, Xiao-Qing Zeng, Stewart C. Sanderson, V. V. Byalt, Alexander P. Sukhorukov
Software Mentions: 3
Published: about 7 years ago
10.1371/journal.pone.0203275
Genetic diversity and biogeography of T. officinale inferred from multi locus sequence typing approach
Cited by: 3
Author(s): Mahdi Jafari, Waheed Akram, Yanju Pang, Aqeel Ahmad, Shakeel Ahmed, Nasim Ahmad Yasin, Tehmina Anjum, Basharat Ali, Xiangdong Hu, Xiaohua Li, Shuang-Lin Dong, Qian Cai, Matteo Ciprian, Monika Bielec, Sheng Hu, Fatemeh Sefidkon, Xuebo Hu
Software Mentions: 3
Published: about 6 years ago
10.1007/s00345-020-03168-1
Robot-assisted simple prostatectomy versus open simple prostatectomy: a single-center comparison
Cited by: 25
Author(s): Robert Dotzauer, Alessandro Torre, Arun Z. Thomas, Maximilian Peter Brandt, Katharina Böhm, René Mager, Hendrik Borgmann, Wolfgang Jäger, M. Kurosch, Thomas Höfner, Christian Ruckes, Axel Haferkamp, Igor Tsaur
Software Mentions: 2
Published: over 4 years ago
10.1002/ece3.1030
Delimiting cryptic pathogen species causing apple Valsa canker with multilocus data
Cited by: 64
Author(s): Xiuli Wang, Rui Zang, Zhiyuan Yin, Zhensheng Kang, Lili Huang
Software Mentions: 2
Published: over 10 years ago
10.1080/21501203.2018.1478333
Introgression and gene family contraction drive the evolution of lifestyle and host shifts of hypocrealean fungi
Cited by: 33
Author(s): Weiwei Zhang, Xiaoling Zhang, Kuan Li, Chengshu Wang, Lei Cai, Wen-Ying Zhuang, Meichun Xiang, Xingzhong Liu
Software Mentions: 2
Published: over 6 years ago
10.1186/1471-2105-11-S2-S1
Resolving anaphoras for the extraction of drug-drug interactions in pharmacological documents
Cited by: 34
Author(s): Isabel Segura-Bedmar, Mario Crespo, César de Pablo-Sánchez, Paloma Martı́nez
Software Mentions: 2
Published: over 14 years ago
10.7717/peerj.6355
New insight into the phylogeographic pattern of<i>Liriodendron chinense</i>(Magnoliaceae) revealed by chloroplast DNA: east–west lineage split and genetic mixture within western subtropical China
Cited by: 10
Author(s): Aihong Yang, Yongda Zhong, Shujuan Liu, Lipan Liu, Tengyun Liu, Yanqiang Li, Fang Yu
Software Mentions: 2
Published: almost 6 years ago
10.1186/1471-2148-12-57
Molecular phylogeny of grunts (Teleostei, Haemulidae), with an emphasis on the ecology, evolution, and speciation history of New World species
Cited by: 45
Author(s): José Tavera, Arturo Acero P., Eduardo F. Balart, Giacomo Bernardi
Software Mentions: 2
Published: almost 13 years ago
10.1186/s12862-018-1277-z
Insights into the historical assembly of global dryland floras: the diversification of Zygophyllaceae
Cited by: 18
Author(s): Songjie Wu, Linjing Zhang, Lin Li, Sheng‐Xiang Yu, Zhiduan Chen, Wei Wang
Software Mentions: 2
Published: about 6 years ago
10.1186/s12900-019-0103-1
QRNAS: software tool for refinement of nucleic acid structures
Cited by: 42
Author(s): Juliusz Stasiewicz, Sunandan Mukherjee, Chandran Nithin, Janusz M. Bujnicki
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pcbi.1008667
ProMod3—A versatile homology modelling toolbox
Cited by: 127
Author(s): Gabriel Studer, Gerardo Tauriello, Stefan Bienert, Marco Biasini, Niklaus Johner, Torsten Schwede
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12862-020-01638-z
An exploration of the complex biogeographical history of the Neotropical banner-wing damselflies (Odonata: Polythoridae)
Cited by: 10
Author(s): Melissa Sánchez Herrera, Christopher D. Beatty, Renato Nunes, Camilo Salazar, Jessica L. Ware
Software Mentions: 2
Published: over 4 years ago
10.1186/s12862-020-01644-1
One species, two developmental modes: a case of geographic poecilogony in marine gastropods
Cited by: 9
Author(s): Benedikt Wiggering, Marco T. Neiber, Katharina Gebauer, Matthias Glaubrecht
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-021-82692-5
Complete chloroplast genomes shed light on phylogenetic relationships, divergence time, and biogeography of Allioideae (Amaryllidaceae)
Cited by: 16
Author(s): Ju Namgung, Hoang Dang Khoa, Changkyun Kim, Hyeok Jae Choi, Joo‐Hwan Kim
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pcbi.1005032
Structure Prediction of RNA Loops with a Probabilistic Approach
Cited by: 25
Author(s): Jun Li, Zhang Jian, Jun Wang, Weihua Li, Wei Wang
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pcbi.1006514
RNA3DCNN: Local and global quality assessments of RNA 3D structures using 3D deep convolutional neural networks
Cited by: 38
Author(s): Jun Li, Wei Zhu, Jun Wang, Weihua Li, Sheng Gong, Zhang Jian, Wei Wang
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12862-017-0995-y
The colonization and divergence patterns of Brandt’s vole (Lasiopodomys brandtii) populations reveal evidence of genetic surfing
Cited by: 11
Author(s): Ke Li, Michael H. Kohn, Songmei Zhang, Xiaofeng Wan, Dazhao Shi, Deng Wang
Software Mentions: 2
Published: over 7 years ago
10.1186/s12870-021-03099-y
Cytotype distribution and chloroplast phylogeography of the Actinidia chinensis complex
Cited by: 6
Author(s): Zhi Wang, Caihong Zhong, Dawei Li, Chunlin Yan, Xia Yao, Zuozhou Li
Software Mentions: 2
Published: over 3 years ago
10.1038/srep26613
Population dynamics of Agriophyllum squarrosum, a pioneer annual plant endemic to mobile sand dunes, in response to global climate change
Cited by: 29
Author(s): Qian Chen, Huajun Yin, Yong Shi, Jiecai Zhao, ChengLiang Yin, Wenhao Luo, Zhibao Dong, Guoxiong Chen, Xiaobing Yan, Xiaoru Wang, Xiaofei Ma
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pcbi.1007462
Simple models of quantitative firing phenotypes in hippocampal neurons: Comprehensive coverage of intrinsic diversity
Cited by: 20
Author(s): Siva Venkadesh, Alexander O. Komendantov, Diek W. Wheeler, D. R. Hamilton, Giorgio A. Ascoli
Software Mentions: 2
Published: about 5 years ago
10.3390/jcm9061798
Robotic-Assisted Simple Prostatectomy: A Systematic Review
Cited by: 27
Author(s): Yakup Kordan, Abdullah Erdem Canda, Ersin Köseoğlu, Derya Balbay, M. Pilar Laguna, Jean de la Rosette
Software Mentions: 2
Published: over 4 years ago
10.1186/gb-2008-9-s2-s2
Overview of BioCreative II gene mention recognition
Cited by: 333
Author(s): Larry Smith, Lorraine Tanabe, R. Ando, Chung‐Hao Kuo, I‐Fang Chung, Chun‐Nan Hsu, Yutong Lin, Roman Klinger, Christoph M. Friedrich, Kuzman Ganchev, Manabu Torii, Hongfang Liu, Barry Haddow, Craig A. Struble, Richard J. Povinelli, Andreas Vlachos, William A. Baumgartner, Lawrence Hunter, Bob Carpenter, Richard Tzong-Han Tsai, Hong-Jie Dai, Liang Feng, Yifei Chen, Chengjie Sun, Sophia Katrenko, Pieter Adriaans, Christian Blaschke, Rafael Torres, Mariana Neves, Preslav Nakov, Anna Divoli, Manuel J. Maña López, Jacinto Mata, W. John Wilbur
Software Mentions: 2
Published: about 16 years ago
10.1186/s43008-020-00031-1
The saprotrophic Pleurotus ostreatus species complex: late Eocene origin in East Asia, multiple dispersal, and complex speciation
Cited by: 10
Author(s): Jing Li, Lihong Han, Xiaobin Liu, Zhi‐Wei Zhao, Zhu L. Yang
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-020-57625-3
Evidence of an ancient connectivity and biogeodispersal of a bitterling species, Rhodeus notatus, across the Korean Peninsula
Cited by: 9
Author(s): Hari Won, Hyung‐Bae Jeon, Ho Young Suk
Software Mentions: 2
Published: almost 5 years ago
10.1155/2020/8426287
Plastome Phylogenomic and Biogeographical Study on <i>Thuja</i> (Cupressaceae)
Cited by: 5
Author(s): Kole F. Adelalu, Xu Zhang, Xiaolu Qu, Jacob B. Landis, Jun Shen, Yanxia Sun, Anming Meng, Hang Sun, Hengchang Wang
Software Mentions: 2
Published: over 4 years ago
10.1186/s40529-018-0244-8
Nuclear and chloroplast DNA phylogeography suggests an Early Miocene southward expansion of Lithocarpus (Fagaceae) on the Asian continent and islands
Cited by: 7
Author(s): Chia‐Ling Yang, Yu Chung Chiang, Bing Huang, Li Ju, Pei Chun Liao
Software Mentions: 2
Published: about 6 years ago
10.3390/s17112535
Design of UAV-Embedded Microphone Array System for Sound Source Localization in Outdoor Environments
Cited by: 74
Author(s): Kotaro Hoshiba, Kai Washizaki, Mizuho Wakabayashi, Takahiro Ishiki, Makoto Kumon, Yoshiaki Bando, Daniel Gabriel, Kazuhiro Nakadai, Hiroshi G. Okuno
Software Mentions: 2
Published: about 7 years ago
10.7717/peerj.2696
Historical reconstruction of climatic and elevation preferences and the evolution of cloud forest-adapted tree ferns in Mesoamerica
Cited by: 21
Author(s): Victoria Sosa, Juan Francisco Ornelas, Santiago Ramírez‐Barahona, Etelvina Gándara
Software Mentions: 2
Published: about 8 years ago
10.1002/ece3.2688
Out of Africa: Biogeography and diversification of the pantropical pond skater genus<i>Limnogonus</i>Stål, 1868 (Hemiptera: Gerridae)
Cited by: 10
Author(s): Zhen Ye, Yahui Zhen, Yanyan Zhou, Wenjun Bu
Software Mentions: 2
Published: almost 8 years ago
10.1038/s41426-017-0009-6
Origin and dispersal of Hepatitis E virus
Cited by: 43
Author(s): Diego Forni, Rachele Cagliani, Mario Clerici, Manuela Sironi
Software Mentions: 2
Published: almost 7 years ago
10.1186/s12862-015-0445-7
Phylogeny and biogeography of Primula sect. Armerina: implications for plant evolution under climate change and the uplift of the Qinghai-Tibet Plateau
Cited by: 30
Author(s): Guangpeng Ren, Elena Conti, Nicolas Salamin
Software Mentions: 2
Published: over 9 years ago
10.7717/peerj.3055
Specimen-level phylogenetics in paleontology using the Fossilized Birth-Death model with sampled ancestors
Cited by: 14
Author(s): Andrea Cau
Software Mentions: 2
Published: over 7 years ago
10.3390/cancers11121880
Delineation of Tumor Migration Paths by Using a Bayesian Biogeographic Approach
Cited by: 6
Author(s): Antonia Chroni, Tracy Vu, Sayaka Miura, Sudhir Kumar
Software Mentions: 2
Published: almost 5 years ago
10.1016/j.cub.2018.05.058
Pan-genome Analysis of Ancient and Modern Salmonella enterica Demonstrates Genomic Stability of the Invasive Para C Lineage for Millennia
Cited by: 67
Author(s): Zhemin Zhou, Inge Lundstrøm, Alicia Tran-Dien, Sebastián Duchêne, Nabil-Fareed Alikhan, Martin J. Sergeant, Gemma C. Langridge, Anna K. Fotakis, Satheesh Nair, Hans K. Stenøien, Stian S. Hamre, Sherwood Casjens, Axel Christophersen, Christopher Quince, Nicholas R. Thomson, François‐Xavier Weill, Simon Y. W. Ho, M. Thomas P. Gilbert, Mark Achtman
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0042932
In and out of Madagascar: Dispersal to Peripheral Islands, Insular Speciation and Diversification of Indian Ocean Daisy Trees (Psiadia, Asteraceae)
Cited by: 44
Author(s): Joeri S. Strijk, Richard D. Noyes, Dominique Strasberg, Corinne Cruaud, Frédérick Gavory, Mark W. Chase, Richard J. Abbott, Christophe Thébaud
Software Mentions: 2
Published: over 12 years ago
10.7717/peerj.2639
Hyainailourine and teratodontine cranial material from the late Eocene of Egypt and the application of parsimony and Bayesian methods to the phylogeny and biogeography of Hyaenodonta (Placentalia, Mammalia)
Cited by: 36
Author(s): Matthew R. Borths, Patricia A. Holroyd, Erik R. Seiffert
Software Mentions: 2
Published: about 8 years ago
10.1371/journal.pone.0037240
Millipede Taxonomy after 250 Years: Classification and Taxonomic Practices in a Mega-Diverse yet Understudied Arthropod Group
Cited by: 49
Author(s): Michael S. Brewer, Petra Sierwald, Jason E. Bond
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0202339
But they move! Vicariance and dispersal in southern South America: Using two methods to reconstruct the biogeography of a clade of lizards endemic to South America
Cited by: 4
Author(s): Thomas N. Hibbard, María Soledad Andrade-Díaz, Juan Manuel Díaz Gómez
Software Mentions: 2
Published: about 6 years ago
10.1371/journal.pone.0138697
Evolution of Asian Interior Arid-Zone Biota: Evidence from the Diversification of Asian Zygophyllum (Zygophyllaceae)
Cited by: 21
Author(s): Songjie Wu, Lin Li, Honglei Li, Sheng‐Xiang Yu, Linjing Zhang, Wei Wang
Software Mentions: 2
Published: about 9 years ago
10.1371/journal.pone.0179760
Evolutionary history and phylogeographic relationships of shrews from Sorex araneus group
Cited by: 22
Author(s): Paweł Mackiewicz, Magdalena Moska, Heliodor Wierzbicki, Przemysław Gagat, Dorota Mackiewicz
Software Mentions: 2
Published: over 7 years ago
10.1186/s12862-015-0405-2
Morphological and ecological divergence of Lilium and Nomocharis within the Hengduan Mountains and Qinghai-Tibetan Plateau may result from habitat specialization and hybridization
Cited by: 31
Author(s): Yongxing Gao, AJ Harris, Xing‐Jin He
Software Mentions: 2
Published: over 9 years ago
10.1371/journal.pone.0084012
Tracing the Rise of Ants - Out of the Ground
Cited by: 59
Author(s): Andrea Lucky, Michelle Trautwein, Benoit Guénard, Michael D. Weiser, Robert R. Dunn
Software Mentions: 2
Published: almost 11 years ago
10.7717/peerj.2220
Evolutionary relationships within the lamioid tribe Synandreae (Lamiaceae) based on multiple low-copy nuclear loci
Cited by: 4
Author(s): Tilottama Roy, Nathan S. Catlin, Drake M.G. Garner, Philip D. Cantino, Anne‐Cathrine Scheen, Charlotte Lindqvist
Software Mentions: 2
Published: over 8 years ago
10.7717/peerj.3770
Phylogeographic investigation and ecological niche modelling of the endemic frog species<i>Nanorana pleskei</i>revealed multiple refugia in the eastern Tibetan Plateau
Cited by: 12
Author(s): Bin Wang, Feng Xie, Jiannan Li, Gang Wang, Cheng Li, Jianping Jiang
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0159790
Phylogeography of Libanotis buchtormensis (Umbelliferae) in Disjunct Populations along the Deserts in Northwest China
Cited by: 7
Author(s): Ping Wang, Xianzhi Zhang, Nan Tang, Jianjun Liu, Liang Xu, Kai Wang
Software Mentions: 2
Published: over 8 years ago
10.1186/s40851-021-00172-0
New Indomalayan Nebularmis species (Heterotardigrada: Echiniscidae) provoke a discussion on its intrageneric diversity
Cited by: 6
Author(s): Piotr Gąsiorek, Katarzyna Vončina, Joanna A. Ciosek, Mariana Veloso, Paulo Fontoura, Łukasz Michalczyk
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2148-13-138
The bee tree of life: a supermatrix approach to apoid phylogeny and biogeography
Cited by: 131
Author(s): Shannon M. Hedtke, Sèbastien Patiny, Bryan N. Danforth
Software Mentions: 1
Published: almost 12 years ago
10.1007/s00345-021-03780-9
TURPxit or not: contemporary management options for benign prostatic obstruction
Cited by: 0
Author(s): Thomas Herrmann, Vincent Misraï, Fernando Gómez Sancha, Thorsten Bach
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2148-14-5
The utility of CAD in recovering Gondwanan vicariance events and the evolutionary history of Aciliini (Coleoptera: Dytiscidae)
Cited by: 25
Author(s): Rasa Bukontaite, Kelly B. Miller, Johannes Bergsten
Software Mentions: 1
Published: almost 11 years ago
10.1080/23802359.2021.1901620
Diversification and colonization processes in Gobioidei predicted based on mitochondrial 12S rRNA with focusing on Oxudercidae
Cited by: 0
Author(s): Hyung‐Bae Jeon, Jumin Jun, Seung-Ho Choi, Ho Young Suk
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2148-11-230
Evolutionary history of Serpulaceae (Basidiomycota): molecular phylogeny, historical biogeography and evidence for a single transition of nutritional mode
Cited by: 64
Author(s): Inger Skrede, Ingeborg Bjorvand Engh, Manfred Binder, Tor Carlsen, Håvard Kauserud, Mika Bendiksby
Software Mentions: 1
Published: over 13 years ago
10.1186/s12862-015-0552-5
Phylogenomic methods outperform traditional multi-locus approaches in resolving deep evolutionary history: a case study of formicine ants
Cited by: 153
Author(s): Bonnie B. Blaimer, Seán G. Brady, Ted R. Schultz, Michael W. Lloyd, Brian L. Fisher, Philip S. Ward
Software Mentions: 1
Published: almost 9 years ago
10.1093/bioinformatics/btt441
WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures
Cited by: 7
Author(s): Tomás Norambuena, Jorge F. Cares, Emidio Capriotti, Francisco S. Melo
Software Mentions: 1
Published: over 11 years ago
10.3758/s13428-013-0420-4
The Centre for Speech, Language and the Brain (CSLB) concept property norms
Cited by: 117
Author(s): Barry Devereux, Lorraine K. Tyler, Jeroen Geertzen, Billi Randall
Software Mentions: 1
Published: almost 11 years ago
10.1186/s12862-015-0483-1
The biogeographic origin of a radiation of trees in Madagascar: implications for the assembly of a tropical forest biome
Cited by: 35
Author(s): Sarah Federman, Alex Dornburg, Alexander E. Downie, Alison F. Richard, Douglas C. Daly, Michael J. Donoghue
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0123228
Spatiotemporal Evolution of Calophaca (Fabaceae) Reveals Multiple Dispersals in Central Asian Mountains
Cited by: 6
Author(s): Mingli Zhang, Zhibin Wen, Peter W. Fritsch, Stewart C. Sanderson
Software Mentions: 1
Published: over 9 years ago
10.1186/s12870-015-0540-3
Origin and evolution of Petrocosmea (Gesneriaceae) inferred from both DNA sequence and novel findings in morphology with a test of morphology-based hypotheses
Cited by: 17
Author(s): Zhen Qiu, Yonglin Lu, Chaoqun Li, Yang Dong, James F. Smith, Yin-Zheng Wang
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0201251
Phylogeography of the gall-inducing micromoth Eucecidoses minutanus Brèthes (Cecidosidae) reveals lineage diversification associated with the Neotropical Peripampasic Orogenic Arc
Cited by: 7
Author(s): Gabriela Thomaz da Silva, Germán San Blas, Willian Thomaz Peçanha, Gilson R. P. Moreira, Gislene Lopes Gonçalves
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0185301
The first hyaenodont from the late Oligocene Nsungwe Formation of Tanzania: Paleoecological insights into the Paleogene-Neogene carnivore transition
Cited by: 22
Author(s): Matthew R. Borths, Nancy J. Stevens
Software Mentions: 1
Published: about 7 years ago
10.1186/s12870-019-2147-6
Plastome phylogenomics, biogeography, and clade diversification of Paris (Melanthiaceae)
Cited by: 33
Author(s): Yunheng Ji, Lifang Yang, Mark W. Chase, Changkun Liu, Zhao Yang, Jin Yang, Jun‐Bo Yang, Ting‐Shuang Yi
Software Mentions: 1
Published: almost 5 years ago
10.1186/1471-2148-14-146
The evolutionary history of Antirrhinum in the Pyrenees inferred from phylogeographic analyses
Cited by: 18
Author(s): Isabel M Liberal, Monique Burrus, Claire Suchet, Christophe Thébaud, Pablo Vargas
Software Mentions: 1
Published: almost 11 years ago
10.1186/s12862-017-0877-3
Resolved phylogeny and biogeography of the root pathogen Armillaria and its gasteroid relative, Guyanagaster
Cited by: 65
Author(s): Rachel A. Koch, Andrew Wilson, Olivier Séné, Terry W. Henkel, M. Catherine Aime
Software Mentions: 1
Published: almost 8 years ago
10.1186/1471-2148-14-143
Multi-locus phylogeny of lethal amanitas: Implications for species diversity and historical biogeography
Cited by: 89
Author(s): Qing Cai, R. E. Tulloss, Li Tang, Tolgor Bau, Ping Zhang, Zuo H. Chen, Zhu L. Yang
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0117171
Does the Arcto-Tertiary Biogeographic Hypothesis Explain the Disjunct Distribution of Northern Hemisphere Herbaceous Plants? The Case of Meehania (Lamiaceae)
Cited by: 43
Author(s): Tao Deng, Ze‐Long Nie, Bryan T. Drew, Sergei Volis, Changkyun Kim, Chun‐Lei Xiang, Jianwen Zhang, Yuehua Wang, Hang Sun
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0171405
Phylogeny and biogeography of the amphi-Pacific genus Aphananthe
Cited by: 12
Author(s): Meiqing Yang, Li D, Jun Wen, Ting‐Shuang Yi
Software Mentions: 1
Published: almost 8 years ago
10.1186/s12870-015-0560-z
Biogeography of the Phalaenopsis amabilis species complex inferred from nuclear and plastid DNAs
Cited by: 11
Author(s): Ching‐Chih Tsai, Chih-Hsing Chou, Hao Ven Wang, Ya-Zhu Ko, Tzen‐Yuh Chiang, Yu Chung Chiang
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0164902
Historical Biogeography of Five Characidium Fish Species: Dispersal from the Amazon Paleobasin to Southeastern South America
Cited by: 9
Author(s): Daniel Poveda-Martínez, Chrystian C. Sosa, Katherine Chacón-Vargas, Víctor Hugo García-Merchán
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0077156
A Mitochondrial Phylogeny and Biogeographical Scenario for Asiatic Water Shrews of the Genus Chimarrogale: Implications for Taxonomy and Low-Latitude Migration Routes
Cited by: 16
Author(s): Shouli Yuan, Xuelong Jiang, Zhenji Li, Kai He, Masashi Harada, Tatsuo Oshida, Liang‐Kong Lin
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0174825
Speciation in progress? A phylogeographic study among populations of Hemitrichia serpula (Myxomycetes)
Cited by: 25
Author(s): Nikki Heherson A. Dagamac, Carlos Rojas, Yuri K. Novozhilov, G. Moreno, Rabea Schlueter, Martin Schnittler
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0144711
The Historical Speciation of Mauremys Sensu Lato: Ancestral Area Reconstruction and Interspecific Gene Flow Level Assessment Provide New Insights
Cited by: 11
Author(s): Huaxing Zhou, Yuan Jiang, Liuwang Nie, Huazong Yin, Haifeng Li, Xianmei Dong, Fei Zhao, Huanhuan Zhang, Youguang Pu, Zhenfeng Huang, Jiao-Lian Song, Entao Sun
Software Mentions: 1
Published: almost 9 years ago
10.1186/1472-6947-12-S1-S4
Detecting modification of biomedical events using a deep parsing approach
Cited by: 4
Author(s): Andrew MacKinlay, David Martínez, Timothy Baldwin
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0028035
Mountain Refugia Play a Role in Soil Arthropod Speciation on Madagascar: A Case Study of the Endemic Giant Fire-Millipede Genus Aphistogoniulus
Cited by: 19
Author(s): Thomas Wesener‍, Michael J. Raupach, Peter Decker
Software Mentions: 1
Published: almost 13 years ago