Ecosyste.ms: Papers

10.1371/journal.ppat.1008886

The immunity of Meiwa kumquat against Xanthomonas citri is associated with a known susceptibility gene induced by a transcription activator-like effector
Cited by: 19
Author(s): Doron Teper, Jin Xu, Jinyun Li, Nian Wang
Software Mentions: 2
Published: about 4 years ago

10.3390/jcm9082440

Identification and Validation of Circulating Micrornas as Prognostic Biomarkers in Pancreatic Ductal Adenocarcinoma Patients Undergoing Surgical Resection
Cited by: 11
Author(s): Natalia Gabło, Karolína Trachtová, Vladimír Procházka, Jan Hlavsa, Tomáš Grolich, Igor Kiss, Josef Srovnal, Alona Řehulková, Martin Loveček, Pavel Skalický, Ioana Berindan‐Neagoe, Zdeněk Kala, Ondřej Slabý
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1008528

Head-to-head comparisons of Toxoplasma gondii and its near relative Hammondia hammondi reveal dramatic differences in the host response and effectors with species-specific functions
Cited by: 6
Author(s): Zhee Sheen Wong, Sarah L. Sokol-Borrelli, Philipp Olias, J. P. Dubey, Jon P. Boyle
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1009480

Aggressive organ penetration and high vector transmissibility of epidemic dengue virus-2 Cosmopolitan genotype in a transmission mouse model
Cited by: 4
Author(s): Jhe-Jhih Lin, Pei-Jung Chung, Shih-Syong Dai, Wan-Ting Tsai, Yu‐Feng Lin, Yi-Ping Kuo, Kuen-Nan Tsai, Chia-Hao Chien, De-Jiun Tsai, Ming-Sian Wu, Pei-Yun Shu, Andrew Yueh, Hsin‐Wei Chen, Chunhong Chen, Guann-Yi Yu
Software Mentions: 2
Published: over 3 years ago

10.1083/jcb.202012114

CYRI-A limits invasive migration through macropinosome formation and integrin uptake regulation
Cited by: 14
Author(s): Anh Hoang Le, Tamas Yelland, Nikki R. Paul, Loïc Fort, Savvas Nikolaou, Shehab Ismail, Laura M. Machesky
Software Mentions: 2
Published: over 3 years ago

10.1242/bio.043372

Unanchored ubiquitin chains do not lead to marked alterations in gene expression in<i>Drosophila melanogaster</i>
Cited by: 6
Author(s): Jessica R. Blount, Danielle Meyer, Camille Akemann, Sean L. Johnson, Katherine Gurdziel, Tracie R. Baker, Sokol V. Todi
Software Mentions: 2
Published: almost 6 years ago

10.1083/jcb.201906147

CDK1 couples proliferation with protein synthesis
Cited by: 50
Author(s): Katharina Haneke, Johanna Schott, Doris Lindner, Anne Kruse Hollensen, Christian Kroun Damgaard, Cyril Mongis, Michael Knop, Wilhelm Palm, Alessia Ruggieri, Georg Stoecklin
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.ppat.1009940

PCV2 targets cGAS to inhibit type I interferon induction to promote other DNA virus infection
Cited by: 28
Author(s): Zhenyu Wang, Jing Chen, Xingchen Wu, Dan Ma, Xiaohua Zhang, Ruizhen Li, Cong Han, Haixin Liu, Xiangrui Yin, Qian Du, Dewen Tong, Yong Huang
Software Mentions: 2
Published: about 3 years ago

10.1186/s13073-020-00771-0

Investigation of a nonsense mutation located in the complex KIV-2 copy number variation region of apolipoprotein(a) in 10,910 individuals
Cited by: 18
Author(s): Silvia Di Maio, Rebecca Grüneis, Gertraud Streiter, Claudia Lamina, Manuel Maglione, Sebastian Schoenherr, Dietmar Öfner, Barbara Thorand, Annette Peters, Kai‐Uwe Eckardt, Anna Köttgen, Florian Kronenberg, Stefan Coassin
Software Mentions: 2
Published: over 4 years ago

10.1186/s13059-020-02058-4

Analysis of endothelial-to-haematopoietic transition at the single cell level identifies cell cycle regulation as a driver of differentiation
Cited by: 32
Author(s): Giovanni Canu, Emmanouil Athanasiadis, Rodrigo A. Grandy, José Garcia‐Bernardo, Paulina M. Strzelecka, Ludovic Vallier, Daniel Ortmann, Ana Cvejic
Software Mentions: 2
Published: over 4 years ago

10.3390/genes12091428

Different Strategies for the Identification of SARS-CoV-2 Variants in the Laboratory Practice
Cited by: 7
Author(s): Federico Anaclerio, Rossella Ferrante, Domitilla Mandatori, Ivana Antonucci, Matteo Capanna, Verena Damiani, Pamela Di Tomo, Rossella Ferrante, Marianna Ranaudo, Vincenzo De Laurenzi, Liborio Stuppia, Simone De Fabritiis
Software Mentions: 2
Published: about 3 years ago

10.3390/genes8100271

Effects of Conjugated Linoleic Acid Supplementation on the Expression Profile of miRNAs in Porcine Adipose Tissue
Cited by: 4
Author(s): Qi Wang, Renli Qi, Hong Liu, Jing Wang, Wenming Huang, Feiyun Yang, Jinxiu Huang
Software Mentions: 2
Published: about 7 years ago

10.1038/srep10375

A comparative analysis of high-throughput platforms for validation of a circulating microRNA signature in diabetic retinopathy
Cited by: 58
Author(s): Ryan J. Farr, Andrzej S. Januszewski, Mugdha V. Joglekar, Helena Liang, Annie K. McAulley, Alex W. Hewitt, Helen E. Thomas, Thomas Loudovaris, Thomas W. H. Kay, Alicia J. Jenkins, Anandwardhan A. Hardikar
Software Mentions: 2
Published: over 9 years ago

10.1038/srep42892

A novel HRM assay for the simultaneous detection and differentiation of eight poxviruses of medical and veterinary importance
Cited by: 33
Author(s): Esayas Gelaye, Lukas Mach, Jolanta Kolodziejek, Reingard Grabherr, Angelika Loitsch, Jenna E. Achenbach, Norbert Nowotny, Adama Diallo, Charles Euloge Lamien
Software Mentions: 2
Published: almost 8 years ago

10.3390/genes11111344

Transfer-RNA-Derived Fragments Are Potential Prognostic Factors in Patients with Squamous Cell Carcinoma of the Head and Neck
Cited by: 14
Author(s): Xiaolian Gu, Lixiao Wang, Philip J. Coates, Linda Boldrup, Robin Fåhræus, Torben Wilms, Nicola Sgaramella, Karin Nylander
Software Mentions: 2
Published: about 4 years ago

10.1534/g3.116.037390

Human Cell Assays for Synthesis-Dependent Strand Annealing and Crossing over During Double-Strand Break Repair
Cited by: 8
Author(s): Grzegorz Zapotoczny, Jeff Sekelsky
Software Mentions: 2
Published: over 7 years ago

10.1093/g3journal/jkaa018

Chromosomal assembly of the nuclear genome of the endosymbiont-bearing trypanosomatid <i>Angomonas deanei</i>
Cited by: 12
Author(s): John W. Davey, Carolina Moura Costa Catta-Preta, Sally James, Sarah Forrester, Maria Cristina M. Motta, Peter D. Ashton, Jeremy C. Mottram
Software Mentions: 2
Published: almost 4 years ago

10.3390/genes12020221

Evaluation of OpenArray™ as a Genotyping Method for Forensic DNA Phenotyping and Human Identification
Cited by: 7
Author(s): Michele Reni, Giulio Puleri, Valeria Errichiello, L Manzo, Laura Luzzi, Saverio Potenza, Claudia Strafella, Cristina Peconi, Fabio Nicastro, Valerio Caputo, Emiliano Giardina
Software Mentions: 2
Published: almost 4 years ago

10.1186/s12915-019-0698-5

Crystal structure of diamondback moth ryanodine receptor Repeat34 domain reveals insect-specific phosphorylation sites
Cited by: 18
Author(s): Tong Xu, Zhiguang Yuchi
Software Mentions: 2
Published: about 5 years ago

10.1073/pnas.1820556116

Molecular insights into an ancient form of Paget’s disease of bone
Cited by: 23
Author(s): Barry Shaw, Carla L. Burrell, Darrell Green, Ana Navarro-Martinez, Daniel C. Scott, Anna Daroszewska, R. van ’t Hof, Lynn Smith, Frank Hargrave, Sharad Mistry, Andrew R. Bottrill, Benedikt M. Kessler, Román Fischer, Archana Archana, Tamás Dalmay, William D. Fraser, Kirstin Henneberger, Turi King, Silvia González, Robert Layfield
Software Mentions: 2
Published: over 5 years ago

10.1038/s41598-019-50676-1

Assessment of seasonal variation of diet composition in rodents using DNA barcoding and Real-Time PCR
Cited by: 5
Author(s): Filippo Dell’Agnello, Chiara Natali, Sandro Bertolino, Lorenzo Fattorini, Ettore Fedele, Bruno Foggi, Maria Alessandra Martini, Caterina Pisani, Francesco Riga, Antonio Sgarlata, Claudio Ciofi, Marco Zaccaroni
Software Mentions: 2
Published: about 5 years ago

10.3390/v11080706

Genetic Markers Associated with Field PRRSV-Induced Abortion Rates
Cited by: 8
Author(s): Ramona N. Pena, Carlos Fernández, María Blasco-Felip, Lorenzo Fraile, J. Estany
Software Mentions: 2
Published: over 5 years ago

10.3390/microorganisms7120682

Temperature Effects on Methanogenesis and Sulfidogenesis during Anaerobic Digestion of Sulfur-Rich Macroalgal Biomass in Sequencing Batch Reactors
Cited by: 17
Author(s): Heejung Jung, Jaai Kim, Changsoo Lee
Software Mentions: 2
Published: almost 5 years ago

10.3390/microorganisms9050884

Bovine Milk Oligosaccharides and Human Milk Oligosaccharides Modulate the Gut Microbiota Composition and Volatile Fatty Acid Concentrations in a Preclinical Neonatal Model
Cited by: 10
Author(s): Mei Wang, Marcia H. Monaco, Jonas Hauser, Jian Yan, Ryan N. Dilger, Sharon M. Donovan
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms9050893

Baicalein and Baicalin Inhibit SARS-CoV-2 RNA-Dependent-RNA Polymerase
Cited by: 70
Author(s): Keivan Zandi, Katie Musall, Adrian Oo, Dong Cao, Bo Liang, Pouya Hassandarvish, Shuiyun Lan, Ryan L. Slack, Karen A. Kirby, Leda Bassit, Franck Amblard, Baek Kim, Sazaly AbuBakar, Stefan G. Sarafianos, Raymond F. Schinazi
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms8091443

Transcriptome Profiling of Potato (Solanum tuberosum L.) Responses to Root-Knot Nematode (Meloidogyne javanica) Infestation during A Compatible Interaction
Cited by: 8
Author(s): Teresia Nyambura Macharia, Daniel Bellieny-Rabelo, Lucy N. Moleleki
Software Mentions: 2
Published: about 4 years ago

10.3390/mi9120660

Separation and Characterization of Prostate Cancer Cell Subtype according to Their Motility Using a Multi-Layer CiGiP Culture
Cited by: 9
Author(s): Linxiang Wang, Ying Zhou, Jingjing Fu, Zhisong Lu
Software Mentions: 2
Published: almost 6 years ago

10.3390/v13061022

Correlating qRT-PCR, dPCR and Viral Titration for the Identification and Quantification of SARS-CoV-2: A New Approach for Infection Management
Cited by: 25
Author(s): Martina Brandolini, Francesca Taddei, Maria Michela Marino, Laura Grumiro, Agata Scalcione, María Elena Turba, Fabio Gentilini, Manuela Fantini, Silvia Zannoli, Giorgio Dirani, Vittorio Sambri
Software Mentions: 2
Published: over 3 years ago

10.3389/fnins.2020.00081

Identification of Blood Circular RNAs as Potential Biomarkers for Acute Ischemic Stroke
Cited by: 31
Author(s): Dan Lu, Eric S. Ho, Hongcheng Mai, Jiankun Zang, Yanfang Liu, Yufeng Li, Bing Yang, Yan Ding, Chi Kwan Tsang, Anding Xu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmolb.2021.695601

SMPDL3B Predicts Poor Prognosis and Contributes to Development of Acute Myeloid Leukemia
Cited by: 2
Author(s): Huiqing Qu, Ye Zhu
Software Mentions: 2
Published: about 3 years ago

10.3390/antiox10010093

Association of Metabolically Healthy and Unhealthy Obesity Phenotypes with Oxidative Stress Parameters and Telomere Length in Healthy Young Adult Men. Analysis of the MAGNETIC Study
Cited by: 13
Author(s): Mateusz Lejawa, Kamila Osadnik, Tadeusz Osadnik, Natalia Pawlas
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41598-021-87918-0

Urinary microRNAs as non-invasive biomarkers for toxic acute kidney injury in humans
Cited by: 11
Author(s): Fathima Shihana, Wilson Wong, Mugdha V. Joglekar, Fahim Mohamed, Indika Gawarammana, Geoffrey K. Isbister, Anandwardhan A. Hardikar, Devanshi Seth, Nicholas A Buckley
Software Mentions: 2
Published: over 3 years ago

10.3389/fphar.2021.705617

Oroxylin a Attenuates Limb Ischemia by Promoting Angiogenesis via Modulation of Endothelial Cell Migration
Cited by: 2
Author(s): Lusha Zhang, Lu Chen, Chunxiao Li, Hong Shi, Qianyi Wang, Wenjie Yang, Leyu Fang, Yuze Leng, Wei Sun, Mengyao Li, Yuejin Xue, Xiumei Gao, Hong Wang
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2020.01226

Regulation of Exopolysaccharide Production by ProE, a Cyclic-Di-GMP Phosphodiesterase in Pseudomonas aeruginosa PAO1
Cited by: 17
Author(s): Qiang Feng, Stephen Dela Ahator, Tianxing Zhou, Zhiqing Liu, Qiqi Lin, Yang Liu, Jiahui Huang, Jianuan Zhou, Lian-Hui Zhang
Software Mentions: 2
Published: over 4 years ago

10.1186/s40168-020-00916-8

Disruption of ruminal homeostasis by malnutrition involved in systemic ruminal microbiota-host interactions in a pregnant sheep model
Cited by: 26
Author(s): Yanfeng Xue, Limei Lin, Fan Hu, Weiyun Zhu, Shengyong Mao
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-017-0317-z

Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples
Cited by: 41
Author(s): Dagmara W. Lewandowska, Osvaldo Zagordi, Fabienne-Desirée Geissberger, Verena Kufner, Stefan Schmutz, Jürg Böni, Karin J. Metzner, Alexandra Trkola, Michael Huber
Software Mentions: 2
Published: over 7 years ago

10.1264/jsme2.ME20049

Mechanisms of Rice Endophytic Bradyrhizobial Cell Differentiation and Its Role in Nitrogen Fixation
Cited by: 3
Author(s): Teerana Greetatorn, Shun Hashimoto, Taro Maeda, Mitsutaka Fukudome, Pongdet Piromyou, Kamonluck Teamtisong, Panlada Tittabutr, Nantakorn Boonkerd, Masayoshi Kawaguchi, Toshiki Uchiumi, Neung Teaumroong
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2018.00371

Intrahost Norovirus Evolution in Chronic Infection Over 5 Years of Shedding in a Kidney Transplant Recipient
Cited by: 12
Author(s): Andrej Steyer, Tilen Konte, Martin Sagadin, Marko Kolenc, Andrej Škoberne, Julija Germ, Tadeja Dovč-Drnovšek, Miha Arnol, Mateja Poljšak-Prijatelj
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2017.01174

Comparison among the Quantification of Bacterial Pathogens by qPCR, dPCR, and Cultural Methods
Cited by: 65
Author(s): M. Ricchi, Cristina Bertasio, Maria Beatrice Boniotti, Nadia Vicari, Simone Russo, M. Tilola, Marco A. Bellotti, Barbara Bertasi
Software Mentions: 2
Published: over 7 years ago

10.3389/fphys.2017.01046

Transcriptomic Analysis of Young and Old Erythrocytes of Fish
Cited by: 14
Author(s): Miriam Götting, Mikko Nikinmaa
Software Mentions: 2
Published: almost 7 years ago

10.3389/fimmu.2019.00984

Dual RNA-Seq Unveils Pseudomonas plecoglossicida htpG Gene Functions During Host-Pathogen Interactions With Epinephelus coioides
Cited by: 22
Author(s): Lixing Huang, Lingmin Zhao, Wenjia Liu, Xiaojin Xu, Yongquan Su, Yingxue Qin, Qingpi Yan
Software Mentions: 2
Published: over 5 years ago

10.3389/fimmu.2020.589866

miRNA Regulation of NK Cells Antiviral Response in Children With Severe and/or Recurrent Herpes Simplex Virus Infections
Cited by: 4
Author(s): Marzena Lenart, Edyta Działo, Anna Kluczewska, Kazimierz Węglarczyk, Anna Szaflarska, Magdalena Rutkowska-Zapała, Marcin Surmiak, Marek Sanak, Anna Pituch‐Noworolska, Maciej Siedlar
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2020.550624

Combining Host Genetics and Functional Analysis to Depict Inflammasome Contribution in Tuberculosis Susceptibility and Outcome in Endemic Areas
Cited by: 5
Author(s): Dhêmerson Souza de Lima, Caio César Barbosa Bomfim, Vinícius Nunes Cordeiro Leal, Edione C. Reis, José Soares, Fernanda Pereira Fernandes, Eduardo Pinheiro Amaral, Flávio Vieira Loures, Maurício Morishi Ogusku, Maria Regina D’Império Lima, Aya Sadahiro, Alessandra Pontillo
Software Mentions: 2
Published: about 4 years ago

10.3389/fimmu.2020.599647

Regulation of Decay Accelerating Factor Primes Human Germinal Center B Cells for Phagocytosis
Cited by: 6
Author(s): Andy Dernstedt, Jana Leidig, Anna Holm, Priscilla F Kerkman, Jenny Mjösberg, Clas Ahlm, Johan Henriksson, Magnus Hultdin, Mattias N.E. Forsell
Software Mentions: 2
Published: almost 4 years ago

10.22038/ijbms.2020.43535.10224

Spermatogonia apoptosis induction as a possible mechanism of Toxoplasma gondii-induced male infertility.
Cited by: 1
Author(s): Jasem Saki, Mohamad Sabaghan, Reza Arjmand, Ali Teimoori, Mohammad Rashno, Ghasem Saki, Saeedeh Shojaee
Software Mentions: 2
Published: about 4 years ago

10.1089/omi.2019.0122

MicroRNA Mediated Changes in Drug Metabolism and Target Gene Expression by Efavirenz and Rifampicin <i>In Vitro</i>: Clinical Implications
Cited by: 7
Author(s): Marelize Swart, Collet Dandara
Software Mentions: 2
Published: about 5 years ago

10.3389/fgene.2021.666106

ESPL1 Is a Novel Prognostic Biomarker Associated With the Malignant Features of Glioma
Cited by: 5
Author(s): Zhendong Liu, Xiaoyu Lian, Xiuru Zhang, Yongjie Zhu, Wang Zhang, Jialin Wang, Hongbo Wang, Binfeng Liu, Zhishuai Ren, Mengjun Zhang, Mingyang Li, Yanzheng Gao
Software Mentions: 2
Published: about 3 years ago

10.3389/fcimb.2017.00253

Chlamydia trachomatis Infection Is Associated with E-Cadherin Promoter Methylation, Downregulation of E-Cadherin Expression, and Increased Expression of Fibronectin and α-SMA—Implications for Epithelial-Mesenchymal Transition
Cited by: 18
Author(s): Jovana Rajić, Aleksandra Inić-Kanada, Elisabeth Stein, Svetlana Dinić, Nadine Schuerer, Aleksandra Uskoković, Ehsan Ghasemian, Mirjana Mihailović, Melita Vidaković, Nevena Grdović, Talin Barisani-Asenbauer
Software Mentions: 2
Published: over 7 years ago

10.3390/md18120612

Effect of Nitrogen Sources on Omega-3 Polyunsaturated Fatty Acid Biosynthesis and Gene Expression in Thraustochytriidae sp.
Cited by: 5
Author(s): Siting Li, Zhangli Hu, Xiao Yang, Yan Li
Software Mentions: 2
Published: almost 4 years ago

10.1007/s00401-018-1806-2

T lymphocytes facilitate brain metastasis of breast cancer by inducing Guanylate-Binding Protein 1 expression
Cited by: 52
Author(s): Dana A. M. Mustafa, Rute M S M Pedrosa, Marcel Smid, Marcel van der Weiden, Vanja de Weerd, Alex L. Nigg, Cor Berrevoets, Lona Zeneyedpour, Neibla Priego, Manuel Valiente, Theo M. Luider, Reno Debets, John W.M. Martens, John A. Foekens, Anieta M. Sieuwerts, Johan M. Kros
Software Mentions: 2
Published: almost 7 years ago

10.3389/fcimb.2020.591751

cheA, cheB, cheR, cheV, and cheY Are Involved in Regulating the Adhesion of Vibrio harveyi
Cited by: 17
Author(s): Xiaojin Xu, Huiyao Li, Xin Qi, Yunong Chen, Yingxue Qin, Jiang Zheng, Xinglong Jiang
Software Mentions: 2
Published: almost 4 years ago

10.7717/peerj.7782

Identification of hub genes and small-molecule compounds related to intracerebral hemorrhage with bioinformatics analysis
Cited by: 17
Author(s): Zhendong Liu, Ruotian Zhang, Xin Chen, Penglei Yao, Tao Yan, Wenwu Liu, Jiawei Yao, Andrei Sokhatskii, Ilgiz Gareev, Shen Zhao
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2020.01388

A Novel α/β Hydrolase Domain Protein Derived From Haemonchus contortus Acts at the Parasite-Host Interface
Cited by: 10
Author(s): Mingmin Lu, Xiaowei Tian, Ai-Ling Tian, Charles Li, Yan Ren, Lixin Xu, Xiaoling Song, Xiangrui Li
Software Mentions: 2
Published: over 4 years ago

10.7717/peerj.10433

Identification and prognostic value of DLGAP5 in endometrial cancer
Cited by: 10
Author(s): Ruoyi Zheng, Zhengzheng Shi, Wenzhi Li, Jianqin Yu, Yuli Wang, Qing Zhou
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13072-019-0318-1

Reduced H3K27me3 leads to abnormal Hox gene expression in neural tube defects
Cited by: 25
Author(s): Jianhua Yu, Lei Wang, Pei Pei, Xue Li, Jianxin Wu, Zhiyong Qiu, Juan Zhang, Ruifang Ao, Shan Wang, Ting Zhang, Jun Xie
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12864-019-6322-9

Hierarchical transcriptional control regulates Plasmodium falciparum sexual differentiation
Cited by: 57
Author(s): Riëtte van Biljon, Roelof van Wyk, Heather J. Painter, Lindsey M. Orchard, Janette Reader, Jandeli Niemand, Manuel Llinás, Lyn‐Marié Birkholtz
Software Mentions: 2
Published: almost 5 years ago

10.26508/lsa.201900353

<i>PISD</i>is a mitochondrial disease gene causing skeletal dysplasia, cataracts, and white matter changes
Cited by: 37
Author(s): Tian Zhao, Caitlin Goedhart, Pingdewinde N. Sam, Rasha Sabouny, Susanne Lingrell, Adam J. Cornish, Ryan E. Lamont, François P. Bernier, David S. Sinasac, Jillian S. Parboosingh, Jean E. Vance, Steven M. Claypool, A. Micheil Innes, Timothy E. Shutt
Software Mentions: 2
Published: over 5 years ago

10.1242/dmm.033043

SIL1, the ER Hsp70 co-chaperone, plays a critical role in maintaining skeletal muscle proteostasis and physiology
Cited by: 13
Author(s): Viraj P. Ichhaporia, Jieun Kim, Kanisha Kavdia, Peter Vogel, Linda H. Horner, Sharon Frase, Linda M. Hendershot
Software Mentions: 2
Published: almost 7 years ago

10.3389/fcell.2020.544043

Comparative Transcriptional Profiling of Motor Neuron Disorder-Associated Genes in Various Human Cell Culture Models
Cited by: 8
Author(s): Stefan Hauser, Stefanie Schuster, Elena Heuten, Philip Höflinger, Jakob Admard, Yvonne Schelling, Ana Velić, Boris Maček, Stephan Ossowski, Lüdger Schöls
Software Mentions: 2
Published: about 4 years ago

10.1016/S2542-5196(21)00051-6

Monitoring of diverse enteric pathogens across environmental and host reservoirs with TaqMan array cards and standard qPCR: a methodological comparison study
Cited by: 15
Author(s): Rachael Lappan, Rebekah Henry, Steven L. Chown, Stephen P. Luby, Ellen E. Higginson, Lamiya Bata, Thanavit Jirapanjawat, Christelle Schang, John J. Openshaw, Joanne Elizabeth O'Toole, Audrie Lin, Autiko Tela, Amelia Turagabeci, Tony Hoong Fatt Wong, Matthew French, Rebekah Ruth Brown, Karin Leder, Chris Greening, David Thomas McCarthy
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/2782101

MicroRNA-7 as a Potential Biomarker for Prognosis in Pancreatic Cancer
Cited by: 18
Author(s): Zhiqiang Ye, Changlin Zou, Hanbin Chen, Mier Jiang, Mingqing Zhu, Di Gu
Software Mentions: 2
Published: over 4 years ago

10.3390/diagnostics11010053

Nucleic Acid-Based Diagnostic Tests for the Detection SARS-CoV-2: An Update
Cited by: 60
Author(s): Choo Yee Yu, Kok Gan Chan, Chan Yean Yean, Geik Yong Ang
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.crbiot.2020.03.001

Restoration of wild-type motility to flagellin-knockout Escherichia coli by varying promoter, copy number and induction strength in plasmid-based expression of flagellin
Cited by: 3
Author(s): Nicholas M. Thomson, Mark J. Pallen
Software Mentions: 2
Published: about 4 years ago

10.3390/diagnostics11091697

Investigation of Therapeutic Response Markers for Acupuncture in Parkinson’s Disease: An Exploratory Pilot Study
Cited by: 4
Author(s): Sang Min Park, Aeyung Kim, Gunhyuk Park, Ojin Kwon, Sang-Soo Park, Ho-Ryong Yoo, Jung‐Hee Jang
Software Mentions: 2
Published: about 3 years ago

10.1242/dmm.045096

CHIP mutations affect the heat shock response differently in human fibroblasts and iPSC-derived neurons
Cited by: 5
Author(s): Stefanie Schuster, Elena Heuten, Ana Velić, Jakob Admard, Matthis Synofzik, Stephan Ossowski, Boris Maček, Stefan Hauser, Lüdger Schöls
Software Mentions: 2
Published: about 4 years ago

10.1042/CS20210628

Exposure to cigarette smoke precipitates simple hepatosteatosis to NASH in high-fat diet fed mice by inducing oxidative stress
Cited by: 4
Author(s): Sherouk Fouda, Anwar Khan, Stanley M H Chan, Ali Mahzari, Xin Zhou, Cheng Xue Qin, Ross Vlahos, Ji-Ming Ye
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pntd.0008120

Detecting extra-ocular Chlamydia trachomatis in a trachoma-endemic community in Ethiopia: Identifying potential routes of transmission
Cited by: 26
Author(s): Bart Versteeg, Oumer Shafi Abdurahman, Ailie Robinson, Gebeyehu Dumessa, Muluadam Abraham Aga, Gemechu Shumi Bejiga, Nebiyu Negussu, Katie Greenland, Alexandra Czerniewska, Nicholas R. Thomson, Sandy Cairncross, Virginia Sarah, David Macleod, Anthony W. Solomon, James G. Logan, Matthew J. Burton
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pntd.0009195

Zika virus-like particle vaccine protects AG129 mice and rhesus macaques against Zika virus
Cited by: 12
Author(s): Lo Vang, Christopher S. Morello, Jason Mendy, Danielle Thompson, Darly J. Manayani, Ben Guenther, Justin G. Julander, Daniel Sanford, Amit Jain, Amish Patel, Paul Shabram, Jonathan Smith, Jeff Alexander
Software Mentions: 2
Published: over 3 years ago

10.1016/j.xcrm.2020.100037

Pharmacological Activation of Non-canonical NF-κB Signaling Activates Latent HIV-1 Reservoirs In Vivo
Cited by: 23
Author(s): Lars Pache, Matthew D. Marsden, Peter Teriete, Alex J. Portillo, Dominik Heimann, Jocelyn T. Kim, Mohamed S. Soliman, Melanie Dimapasoc, Christopher Carmona, Maria Celeridad, Adam M. Spivak, Vicente Planelles, Nicholas D. P. Cosford, Jerome A. Zack, Sumit K. Chanda
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pntd.0009308

Non-replicating adenovirus based Mayaro virus vaccine elicits protective immune responses and cross protects against other alphaviruses
Cited by: 11
Author(s): John M. Powers, Nicole Haese, Michael Denton, Takeshi Ando, Craig N. Kreklywich, Kiley Bonin, Cassilyn E. Streblow, Nicholas Kreklywich, Patricia P. Smith, Rebecca Broeckel, Victor R. DeFilippis, Thomas E. Morrison, Mark T. Heise, Daniel N. Streblow
Software Mentions: 2
Published: over 3 years ago

10.1016/j.celrep.2020.107684

CXCR4 Signaling Has a CXCL12-Independent Essential Role in Murine MLL-AF9-Driven Acute Myeloid Leukemia
Cited by: 25
Author(s): Ramprasad Ramakrishnan, Pablo Peña-Martínez, Puneet Agarwal, Maria Rodriguez‐Zabala, Marion Chapellier, Carl Högberg, Mia Eriksson, David Yudovich, Mansi Shah, Mats Ehinger, Björn Nilsson, Jonas Larsson, Anna Hagström-Andersson, Benjamin L. Ebert, Ravi Bhatia, Marcus Järås
Software Mentions: 2
Published: over 4 years ago

10.1038/s42003-021-02085-2

Environmental DNA monitoring of oncogenic viral shedding and genomic profiling of sea turtle fibropapillomatosis reveals unusual viral dynamics
Cited by: 16
Author(s): Jessica Farrell, Kelsey Yetsko, Liam Whitmore, Jenny Whilde, Catherine B. Eastman, Devon Rollinson Ramia, Rachel Thomas, Paul J. Linser, Simon Creer, Brooke Burkhalter, Christine E. Schnitzler, David J. Duffy
Software Mentions: 2
Published: over 3 years ago

10.1242/dmm.048736

Reproductive history determines <i>Erb</i> <i>b</i> <i>2</i> locus amplification, WNT signalling and tumour phenotype in a murine breast cancer model
Cited by: 2
Author(s): Liliana Ordonez, Lorenzo Melchor, Kirsty Rhian Greenow, Howard Kendrick, Giusy Tornillo, James R. Bradford, Peter Giles, Matthew J. Smalley
Software Mentions: 2
Published: over 3 years ago

10.1038/s41419-021-03497-y

Mutant p53 promotes RCP-dependent chemoresistance coinciding with increased delivery of P-glycoprotein to the plasma membrane
Cited by: 11
Author(s): Vinaya Phatak, Yannick von Grabowiecki, Justyna Janus, Leah Officer, Caron Behan, Lydia Aschauer, Lucia Pinòn, Hannah L. Mackay, Sara Zanivan, Jim C. Norman, Michael Kelly, John Le Quesne, Patricia Müller
Software Mentions: 2
Published: over 3 years ago

10.1038/cdd.2015.22

XLS (c9orf142) is a new component of mammalian DNA double-stranded break repair
Cited by: 61
Author(s): Andrew Craxton, Joanna Somers, Deeksha Munnur, Rebekah Jukes-Jones, Kelvin Cain, Michal Malewicz
Software Mentions: 2
Published: over 9 years ago

10.1038/s41419-021-04108-6

Increased expression of fragmented tRNA promoted neuronal necrosis
Cited by: 6
Author(s): Yanyan Cao, Kai Li, Ying Xiong, Chenglong Zhao, Lei Liu
Software Mentions: 2
Published: about 3 years ago

10.1186/s12935-021-02164-8

The plasma exosomal miR-1180-3p serves as a novel potential diagnostic marker for cutaneous melanoma
Cited by: 19
Author(s): Yeye Guo, Xu Zhang, Linconghua Wang, Min Li, Minxue Shen, Zhe Zhou, Susi Zhu, Keke Li, Zhiqin Fang, Bei Yan, Shuang Zhao, Juan Su, Xiang Chen, Cong Peng
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pcbi.1008375

Quantification of Ebola virus replication kinetics in vitro
Cited by: 8
Author(s): Laura E. Liao, Jonathan Carruthers, Sophie J. Smither, Cl Virology Team, Simon A. Weller, E. Diane Williamson, Thomas R. Laws, Isabel García-Dorival, Julian A. Hiscox, Benjamin P. Holder, C. Beauchemin, Alan S. Perelson, Martín López‐García, Grant Lythe, John N. Barr, Carmen Molina-Parı́s
Software Mentions: 2
Published: about 4 years ago

10.3390/cancers12040813

Ensartinib (X-396) Effectively Modulates Pharmacokinetic Resistance Mediated by ABCB1 and ABCG2 Drug Efflux Transporters and CYP3A4 Biotransformation Enzyme
Cited by: 19
Author(s): Dimitrios Vagiannis, Eva Novotná, Adam Skarka, Sarah Kammerer, Jan-Heiner Küpper, Si Chen, Lei Guo, František Štaud, Jakub Hofman
Software Mentions: 2
Published: over 4 years ago

10.1186/s12964-020-00601-1

miR-146a-5p impairs melanoma resistance to kinase inhibitors by targeting COX2 and regulating NFkB-mediated inflammatory mediators
Cited by: 14
Author(s): Elisabetta Vergani, Matteo Dugo, Mara Cossa, Simona Frigerio, Lorenza Di Guardo, Gianfrancesco Gallino, Ilaria Mattavelli, Barbara Vergani, Luca Lalli, Elena Tamborini, Barbara Valeri, Chiara Gargiuli, Eriomina Shahaj, Marina Ferrarini, Elisabetta Ferrero, Macarena Gomez-Lira, Veronica Huber, Michele Del Vecchio, Marialuisa Sensi, Biagio Eugenio Leone, Mario Santinami, Licia Rivoltini, Monica Rodolfo, Viviana Vallacchi
Software Mentions: 2
Published: about 4 years ago

10.1038/s41421-021-00316-8

Generation of human blastocyst-like structures from pluripotent stem cells
Cited by: 65
Author(s): Yong Fan, Zheying Min, Samhan M. Alsolami, Zheng-lai Ma, E. Zhang, Wei Chen, Ke Zhong, Wendi Pei, Xiangjin Kang, Pu-Yao Zhang, Yongliang Wang, Yingying Zhang, Linfeng Zhan, Haiying Zhu, Chenrui An, Rong Li, Jie Qiao, Tao Tan, Mo Li, Yang Yu
Software Mentions: 2
Published: about 3 years ago

10.3390/cancers12102919

Aberrantly Expressed RECQL4 Helicase Supports Proliferation and Drug Resistance of Human Glioma Cells and Glioma Stem Cells
Cited by: 11
Author(s): Sylwia Król, Agnieszka Kaczmarczyk, Kamil Wojnicki, Bartosz Wojtaś, Bartłomiej Gielniewski, Wiesława Grajkowska, Katarzyna Kotulska, Cezary Szczylik, Ryszard Czepko, Mariusz Banach, Wojciech Kaspera, Wojciech Szopa, Andrzej Marchel, Tomasz Czernicki, Bożena Kamińska
Software Mentions: 2
Published: about 4 years ago

10.3390/cancers13164028

Circulating miRNAs as Novel Non-Invasive Biomarkers to Aid the Early Diagnosis of Suspicious Breast Lesions for Which Biopsy Is Recommended
Cited by: 5
Author(s): Marta Giussani, Chiara Maura Ciniselli, Loris De Cecco, Mara Lecchi, Matteo Dugo, Chiara Gargiuli, Andrea Mariancini, Elisa Mancinelli, Giulia Cosentino, Silvia Veneroni, Biagio Paolini, Rosaria Orlandi, Massimiliano Gennaro, Marilena V. Iorio, Catherine Depretto, Claudio Ferranti, Gabriella Sozzi, Marialuisa Sensi, Mario P. Colombo, Gianfranco Scaperrotta, Elda Tagliabue, Paolo Verderio
Software Mentions: 2
Published: over 3 years ago

10.1186/s12876-021-01648-1

Development of a novel model of cholecystectomy in subsequently ovariectomized mice and characterization of metabolic and gastrointestinal phenotypes: a pilot study
Cited by: 1
Author(s): Celeste Alexander, Tzu Wen L. Cross, Anne H Lee, Lindsey K. Ly, Miranda D. Vieson, Jason M. Ridlon, Erik R. Nelson, Kelly S. Swanson
Software Mentions: 2
Published: almost 4 years ago

10.1038/s41419-020-2269-7

Loss of RE-1 silencing transcription factor accelerates exocrine damage from pancreatic injury
Cited by: 12
Author(s): J. W. Bray, Ola A. Elgamal, Jinmai Jiang, Lais S. Wright, Dhruvitkumar S. Sutaria, Mohamed Badawi, Madeline G. Borcyk, Xiuli Liu, Kristianna M. Fredenburg, Martha Campbell-Thompson, Thomas D. Schmittgen
Software Mentions: 2
Published: almost 5 years ago

10.3390/cancers11081050

PD-L1 Blockade by Atezolizumab Downregulates Signaling Pathways Associated with Tumor Growth, Metastasis, and Hypoxia in Human Triple Negative Breast Cancer
Cited by: 46
Author(s): Reem Saleh, Rowaida Z. Taha, Varun Sasidharan Nair, Nehad M. Alajez, Eyad Elkord
Software Mentions: 2
Published: over 5 years ago

10.3390/cancers13020262

Characterization of SOX2, OCT4 and NANOG in Ovarian Cancer Tumor-Initiating Cells
Cited by: 31
Author(s): Mikella Robinson, Sarah L. Gilbert, Jennifer A. Waters, Omar Lujano-Olazaba, Jacqueline Lara, Logan J. Alexander, Samuel E. Green, Gregory Burkeen, Omid Patrus, Zinia Sarwar, Ryne Holmberg, Christine Wang, Carrie D. House
Software Mentions: 2
Published: almost 4 years ago

10.3390/plants9091061

Genome-Wide Analysis of the PIN Auxin Efflux Carrier Gene Family in Coffee
Cited by: 9
Author(s): Huang Xing, Xuehui Bai, Tieying Guo, Zhouli Xie, Margit Laimer, Dengxiang Du, Thomas Gbokie, Zhirun Zhang, Chunping He, Ying Lu, Weihuai Wu, Kexian Yi
Software Mentions: 2
Published: over 4 years ago

10.1186/s13058-020-01258-x

TBCRC 002: a phase II, randomized, open-label trial of preoperative letrozole with or without bevacizumab in postmenopausal women with newly diagnosed stage 2/3 hormone receptor-positive and HER2-negative breast cancer
Cited by: 8
Author(s): Christos Vaklavas, Brian S. Roberts, Katherine E. Varley, Nancy U. Lin, Minetta C. Liu, Hope S. Rugo, Shannon Puhalla, Rita Nanda, Anna Maria Storniolo, Lisa A. Carey, Mansoor N. Saleh, Yufeng Li, Jennifer F. Delossantos, William E. Grizzle, Albert F. LoBuglio, R Myers, Andres Forero‐Torres
Software Mentions: 2
Published: almost 5 years ago

10.3390/plants10050897

Detection of Reproducible Major Effect QTL for Petal Traits in Garden Roses
Cited by: 6
Author(s): Dietmar Schulz, Marcus Linde, Thomas Debener
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0230136

BRAF V600E mutational load as a prognosis biomarker in malignant melanoma
Cited by: 9
Author(s): Arrate Sevilla, María–Celia Morales, Pilar Ariadna Ezkurra, Javier Rasero, Verónica Velasco, Goikoane Cancho-Galan, Ana Sánchez-Díez, Karmele Mujika, Cristina Penas, Isabel Smith, Aintzane Asumendi, Jesús M. Cortés, María Dolores Boyano, Santos Alonso
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0246359

Transgenic insertion of the cyanobacterial membrane protein ictB increases grain yield in Zea mays through increased photosynthesis and carbohydrate production
Cited by: 10
Author(s): Robert P. Koester, Charles P. Pignon, Dylan C. Kesler, R. S. Willison, Mingyeong Kang, Yu Shen, Henry D. Priest, Matthew B. Begemann, Kevin A. Cook, Gary A. Bannon, Mohammed Oufattole
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0246726

The NKG2D ligand ULBP4 is not expressed by human monocytes
Cited by: 0
Author(s): Mariya Lazarova, Young-Hoon Kim, Alexander Steinle
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13148-021-01073-x

A urine-based DNA methylation assay to facilitate early detection and risk stratification of bladder cancer
Cited by: 30
Author(s): Weimei Ruan, Xu Chen, Ming Huang, Hong Wang, Jiaxin Chen, Zhixin Liang, Jingtong Zhang, Yang Yu, Shang Chen, Shizhong Xu, Tianliang Hu, Xia Li, Yuanjie Guo, Zeyu Jiang, Zhiwei Chen, Jian Huang, Tianxin Lin, Jian–Bing Fan
Software Mentions: 2
Published: over 3 years ago

10.1111/cpr.13042

Maternal sevoflurane exposure induces temporary defects in interkinetic nuclear migration of radial glial progenitors in the fetal cerebral cortex through the Notch signalling pathway
Cited by: 7
Author(s): Ming Jiang, Ting Tang, Xinyue Liang, Juchen Li, Yue Qiu, Shiwen Liu, Shan Bian, Yunyun Xie, Fang Fang, Jing Cang
Software Mentions: 2
Published: over 3 years ago

10.1016/j.cub.2020.12.014

femaleless Controls Sex Determination and Dosage Compensation Pathways in Females of Anopheles Mosquitoes
Cited by: 24
Author(s): Elzbieta Krzywińska, Luca Ferretti, Jianwei Li, Jian-Chiuan Li, Chun Hong Chen, Jaroslaw Krzywinski
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0228357

Paternal exposure to a common herbicide alters the behavior and serotonergic system of zebrafish offspring
Cited by: 12
Author(s): Simon D. Lamb, Jolyn H. Z. Chia, Sheri L. Johnson
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0249548

Umbilical cord miRNAs to predict neonatal early onset sepsis
Cited by: 4
Author(s): Linda M. Ernst, Leena B. Mithal, Karen K. Mestan, Vivien Wang, Kathy A. Mangold, Alexa A. Freedman, Sanchita Das
Software Mentions: 2
Published: over 3 years ago

10.1590/1414-431X2020e11069

Identification and clinical validation of gene signatures with grade and survival in head and neck carcinomas
Cited by: 1
Author(s): Wei Ma, Qing Cao, Wandong She
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0257464

WHotLAMP: A simple, inexpensive, and sensitive molecular test for the detection of SARS-CoV-2 in saliva
Cited by: 2
Author(s): David Chee Eng Ng, Ana Pinharanda, Merly C. Vogt, Ashok Litwin-Kumar, Kyle Stearns, Urvashi V Thopte, Enrico Cannavo, Armen Enikolopov, Felix Fiederling, Stylianos Kosmidis, Barbara Noro, Ines Rodrigues-Vaz, Hani J. Shayya, Peter Andolfatto, Darcy S. Peterka, Tanya Tabachnik, Jeanine D’Armiento, Monica Goldklang, Andrés Bendesky
Software Mentions: 2
Published: about 3 years ago