Ecosyste.ms: Papers

10.3389/fimmu.2021.694344

Mechanism of the Immunomodulatory Effect of the Combination of Live Bifidobacterium, Lactobacillus, Enterococcus, and Bacillus on Immunocompromised Rats
Cited by: 15
Author(s): Longxian Lv, Deguang Mu, Yi‐Ling Du, Yan Ren, Huiyong Jiang
Software Mentions: 3
Published: over 3 years ago

10.3389/fimmu.2017.00723

Unperturbed Cytotoxic Lymphocyte Phenotype and Function in Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Patients
Cited by: 15
Author(s): Jakob Theorell, Indrė Bilevičiūtė-Ljungar, Bianca Tesi, Heinrich Schlums, Mette Sophie Johnsgaard, Babak Asadi-Azarbaijani, Elin Bolle Strand, Yenan T. Bryceson
Software Mentions: 3
Published: over 7 years ago

10.3389/fonc.2019.01510

Non-invasive Molecular Detection of Minimal Residual Disease in Papillary Thyroid Cancer Patients
Cited by: 9
Author(s): Hannah F. Almubarak, Ebtesam Qassem, Lamyaa Alghofaili, Ali S. Alzahrani, Bedri Karakas
Software Mentions: 3
Published: almost 5 years ago

10.3389/fgene.2021.625846

Comprehensive Analysis of Differentially Expressed lncRNA, circRNA and mRNA and Their ceRNA Networks in Mice With Severe Acute Pancreatitis
Cited by: 14
Author(s): Bing Wang, Jun Wu, Qilin Huang, Xiaohui Yuan, Yi Yang, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 3
Published: almost 4 years ago

10.18632/oncotarget.8713

Integrative transcriptome analysis identifies deregulated microRNA-transcription factor networks in lung adenocarcinoma
Cited by: 43
Author(s): Naiara da Costa Cinegaglia, Sónia C. S. Andrade, Tomáš Tokár, Maísa Pinheiro, Fabio Severino, Rogério Antônio de Oliveira, Érica Nishida Hasimoto, Daniele Cristina Catâneo, Antônio José Maria Catâneo, Júlio Defaveri, Cleonilson Protásio de Souza, Márcia Maria Chiquitelli Marques, Robson Francisco Carvalho, Luiz Lehmann Coutinho, Jefferson Luiz Gross, Sílvia Regina Rogatto, Wan L. Lam, Igor Jurišica, Patrícia P. Reis
Software Mentions: 3
Published: over 8 years ago

10.1038/s41418-019-0387-5

The antimalarial drug amodiaquine stabilizes p53 through ribosome biogenesis stress, independently of its autophagy-inhibitory activity
Cited by: 35
Author(s): Jaime A. Espinoza, Asimina Zisi, Dimitris C. Kanellis, Jordi Carreras‐Puigvert, Martin Henriksson, D Hühn, Kenji Watanabe, Thomas Helleday, Mikael S. Lindström, Jiří Bártek
Software Mentions: 3
Published: over 5 years ago

10.1186/s12881-017-0399-2

Whole-exome sequencing and digital PCR identified a novel compound heterozygous mutation in the NPHP1 gene in a case of Joubert syndrome and related disorders
Cited by: 7
Author(s): Shingo Koyama, Hidenori Sato, Manabu Wada, Toru Kawanami, Mitsuru Emi, Takeshi Kato
Software Mentions: 3
Published: over 7 years ago

10.3389/fncel.2021.626192

The Human ApoE4 Variant Reduces Functional Recovery and Neuronal Sprouting After Incomplete Spinal Cord Injury in Male Mice
Cited by: 7
Author(s): Carlos A. Toro, Jens Hansen, Mustafa M Siddiq, Kaitlin Johnson, Wei Zhao, Daniella Azulai, Dibash Kumar Das, William A. Bauman, Robert Sebra, Dongming Cai, Ravi Iyengar, Christopher P. Cardozo
Software Mentions: 3
Published: almost 4 years ago

10.3389/fcimb.2019.00306

Conceptual Design of a Universal Donor Screening Approach for Vaginal Microbiota Transplant
Cited by: 28
Author(s): Kevin DeLong, Sabrine Bensouda, Fareeha Zulfiqar, Hannah C. Zierden, Thuy Hoang, Alison G. Abraham, Jenell S. Coleman, Richard A. Cone, Patti E. Gravitt, Craig W. Hendrix, Edward J. Fuchs, Charlotte A. Gaydos, Ethel D. Weld, Laura M. Ensign
Software Mentions: 3
Published: about 5 years ago

10.18632/aging.202439

A short deletion in the DNA-binding domain of STAT3 suppresses growth and progression of colon cancer cells
Cited by: 3
Author(s): Yijia Xiong, Dongyang Liu, Rongrong Shen, Yanbao Xiong
Software Mentions: 3
Published: almost 4 years ago

10.3389/fcimb.2021.637570

Whipworm-Associated Intestinal Microbiome Members Consistent Across Both Human and Mouse Hosts
Cited by: 11
Author(s): Bruce A. Rosa, Caroline Snowden, John Martin, Kerstin Fischer, Jonah Kupritz, Ethiopia Beshah, Taniawati Supali, Lincoln Gankpala, Peter U. Fischer, Joseph F. Urban, Makedonka Mitreva
Software Mentions: 3
Published: over 3 years ago

10.3389/fcell.2019.00385

Retinoic Acid Induces Embryonic Stem Cells (ESCs) Transition to 2 Cell-Like State Through a Coordinated Expression of Dux and Duxbl1
Cited by: 23
Author(s): Daniela Tagliaferri, P. Mazzone, Teresa Maria Rosaria Noviello, Martina Addeo, Tiziana Angrisano, Luigi Del Vecchio, Feliciano Visconte, Vitalba Ruggieri, Sabino Russi, Antonella Caivano, Irene Cantone, Mario De Felice, Michele Ceccarelli, Luigi Cerulo, Geppino Falco
Software Mentions: 3
Published: almost 5 years ago

10.1080/22221751.2020.1821581

mRNA and miRNA profiling of Zika virus-infected human umbilical cord mesenchymal stem cells identifies miR-142-5p as an antiviral factor
Cited by: 23
Author(s): Rak Kyun Seong, Jae Kwan Lee, Geum Joon Cho, Mukesh Kumar, Ok Sarah Shin
Software Mentions: 3
Published: almost 5 years ago

10.3389/fncel.2020.00137

Cellular and Molecular Targets of Waterbuck Repellent Blend Odors in Antennae of Glossina fuscipes fuscipes Newstead, 1910
Cited by: 5
Author(s): Souleymane Diallo, Mohd Shahbaaz, Baldwyn Torto, Alan Christoffels, Daniel Masiga, Merid N. Getahun
Software Mentions: 3
Published: over 4 years ago

10.3389/fimmu.2019.01928

The Transcriptional and Protein Profile From Human Infected Neuroprogenitor Cells Is Strongly Correlated to Zika Virus Microcephaly Cytokines Phenotype Evidencing a Persistent Inflammation in the CNS
Cited by: 44
Author(s): Morganna Costa Lima, Leila Rodrigues de Mendonça, Antônio Mauro Rezende, Raquel Medialdea-Carrera, Conceição Elidianne Aníbal-Silva, Matthew Demers, Leonardo D’Aiuto, Joel Wood, Kodavali V. Chowdari, Michael J. Griffiths, Antonio R. Lucena-Araújo, Manoel Barral‐Netto, Elisa de Almeida Neves Azevedo, Renan Willian Alves, Pablo Cantalice Santos Farias, Ernesto T. A. Marques, Priscila M. S. Castanha, Claire L. Donald, Alain Kohl, Vishwajit L. Nimgaonkar, Rafael Freitas Oliveira Franca
Software Mentions: 3
Published: over 5 years ago

10.15252/emmm.201911210

Glufosinate constrains synchronous and metachronous metastasis by promoting anti‐tumor macrophages
Cited by: 27
Author(s): Alessio Menga, Marina Serra, Simona Todisco, Carla Riera-Domingo, Ummi Ammarah, Manuel Ehling, Erika M. Palmieri, Maria Antonietta Di Noia, Rosanna Gissi, Maria Favia, Ciro Leonardo Pierri, Paolo E. Porporato, Alessandra Castegna, Massimiliano Mazzone
Software Mentions: 3
Published: about 4 years ago

10.1002/ece3.5658

Not going with the flow: Locomotor activity does not constrain immunity in a wild fish
Cited by: 2
Author(s): Numair Masud, Rebecca Synnott, Pascal I. Hablützel, Ida M. Friberg, Joanne Cable, Joseph A. Jackson
Software Mentions: 3
Published: about 5 years ago

10.1186/s13072-016-0080-6

Absence of genomic hypomethylation or regulation of cytosine-modifying enzymes with aging in male and female mice
Cited by: 46
Author(s): Niran Hadad, Dustin R. Masser, Sreemathi Logan, Benjamin Wronowski, Colleen A. Mangold, Nicholas W. Clark, Laura Otalora, Archana Unnikrishnan, Matthew M. Ford, Cory B. Giles, Jonathan D. Wren, Arlan Richardson, William E. Sonntag, David R. Stanford, Willard M. Freeman
Software Mentions: 3
Published: over 8 years ago

10.3390/diagnostics10121062

Detection of EGFR Mutations in Plasma Cell-Free Tumor DNA of TKI-Treated Advanced-NSCLC Patients by Three Methodologies: Scorpion-ARMS, PNAClamp, and Digital PCR
Cited by: 8
Author(s): Annamaria Siggillino, Paola Ulivi, Luigi Pasini, Maria Sole Reda, Elisa Chiadini, Francesca Romana Tofanetti, Sara Baglivo, Giulio Metro, Lucio Crinò, Angelo Delmonte, Vincenzo Minotti, Fausto Roila, Vienna Ludovini
Software Mentions: 3
Published: almost 4 years ago

10.1523/ENEURO.0168-19.2019

Nociceptor Deletion of Tsc2 Enhances Axon Regeneration by Inducing a Conditioning Injury Response in Dorsal Root Ganglia
Cited by: 19
Author(s): Dan Carlin, Alexandra E. Halevi, Eric E. Ewan, Amy M. Moore, Valeria Cavalli
Software Mentions: 3
Published: over 5 years ago

10.1186/s13072-019-0312-7

Folate deficiency induced H2A ubiquitination to lead to downregulated expression of genes involved in neural tube defects
Cited by: 16
Author(s): Pei Pei, Xiyue Cheng, Jianhua Yu, Jinying Shen, Xue Li, Jianxin Wu, Shan Wang, Ting Zhang
Software Mentions: 3
Published: about 5 years ago

10.3389/fmicb.2021.674639

Clostridium cellulovorans Proteomic Responses to Butanol Stress
Cited by: 4
Author(s): Paolo Costa, Giulia Usai, Angela Re, Marcello Manfredi, Giuseppe Mannino, Cinzia M. Bertea, Enrica Pessione, Roberto Mazzoli
Software Mentions: 3
Published: over 3 years ago

10.3390/cells10081883

Long Non-Coding RNAs Involved in Progression of Non-Alcoholic Fatty Liver Disease to Steatohepatitis
Cited by: 13
Author(s): Biljana Atanasovska, Sander S. Rensen, Glenn Marsman, Ronit Shiri-Sverdlov, Sebo Withoff, Folkert Kuipers, Cisca Wijmenga, Bart van de Sluis, Jingyuan Fu
Software Mentions: 3
Published: over 3 years ago

10.1111/cpr.13090

Continuous expression of reprogramming factors induces and maintains mouse pluripotency without specific growth factors and signaling inhibitors
Cited by: 0
Author(s): Yihuan Mao, Yunlong Wang, Bei Zhong, Ning Yang, Zhikun Li, Tongtong Cui, Guihai Feng, Wei Li, Ying Zhang, Qi Zhou
Software Mentions: 3
Published: over 3 years ago

10.18632/oncotarget.24460

Characterization of brain tumor initiating cells isolated from an animal model of CNS primitive neuroectodermal tumors
Cited by: 5
Author(s): Sergey Malchenko, Simone Treiger Sredni, Jerusha Boyineni, Yingtao Bi, Naira V. Margaryan, Maheedhara R. Guda, Yulia Kostenko, Tadanori Tomita, Ramana V. Davuluri, Kiran Kumar Velpula, Mary J.C. Hendrix, Marcelo B. Soares
Software Mentions: 3
Published: almost 7 years ago

10.3390/diagnostics11071131

Clinical Validation of Novel Chip-Based Digital PCR Platform for Fetal Aneuploidies Screening
Cited by: 4
Author(s): Anna Nykel, Rafał Woźniak, Agnieszka Gach
Software Mentions: 3
Published: over 3 years ago

10.1007/s00248-019-01477-6

Temporal Responses of Microbial Communities to Anaerobic Soil Disinfestation
Cited by: 13
Author(s): Amisha T. Poret-Peterson, Nada Sayed, Nathaniel Glyzewski, Holly Forbes, Enid T. González-Orta, Daniel A. Kluepfel
Software Mentions: 3
Published: almost 5 years ago

10.3390/ijms22062957

Implication of EZH2 in the Pro-Proliferative and Apoptosis-Resistant Phenotype of Pulmonary Artery Smooth Muscle Cells in PAH: A Transcriptomic and Proteomic Approach
Cited by: 9
Author(s): Karima Habbout, Junichi Omura, Charifa Awada, Alice Bourgeois, Yann Grobs, Vinod Krishna, Sandra Breuils‐Bonnet, Éve Tremblay, Ghada Mkannez, Sandra Martineau, Valérie Nadeau, Florence Roux‐Dalvai, Mark Orcholski, Jey Jeyaseelan, David E. Gutstein, François Potus, Steeve Provencher, Sébastien Bonnet, Roxane Paulin, Olivier Boucherat
Software Mentions: 3
Published: over 3 years ago

10.1186/s12964-020-00579-w

Autophagy suppression of trophoblast cells induces pregnancy loss by activating decidual NK cytotoxicity and inhibiting trophoblast invasion
Cited by: 40
Author(s): Hai-Xia Tan, Shao‐Liang Yang, Ming‐Qing Li, Haiyan Wang
Software Mentions: 3
Published: over 4 years ago

10.3390/ijms22073626

Distinct miRNA Signatures and Networks Discern Fetal from Adult Erythroid Differentiation and Primary from Immortalized Erythroid Cells
Cited by: 12
Author(s): Panayiota Papasavva, Nikoletta Papaioannou, Petros Patsali, Ryo Kurita, Yukio Nakamura, Maria Sitarou, Soteroulla Christou, Marina Kleanthous, Carsten W. Lederer
Software Mentions: 3
Published: over 3 years ago

10.18632/aging.202989

Integrated analysis of long noncoding RNAs and mRNA expression profiles reveals the potential role of lncRNAs in early stage of post-peripheral nerve injury in Sprague-Dawley rats
Cited by: 3
Author(s): Yujing Zhang, Zhaowei Zhu, Xiangxia Liu, Shuqia Xu, Yi Zhang, Yangbin Xu, Bo He
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0233191

Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene
Cited by: 3
Author(s): Jaafar Alomairi, Anne Molitor, Nori Sadouni, Saadat Hussain, Magali Torres, Wiam Saadi, Lan T M Dao, Guillaume Charbonnier, David Santiago-Algarra, Jean-Christophe Andrau, Denis Puthier, Tom Sexton, Salvatore Spicuglia
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.62621

miR-125-chinmo pathway regulates dietary restriction-dependent enhancement of lifespan in Drosophila
Cited by: 12
Author(s): Manish Pandey, Sakshi Bansal, Sudipta Bar, Amit Kumar Yadav, Nicholas S. Sokol, Jason M. Tennessen, Pankaj Kapahi, Geetanjali Chawla
Software Mentions: 3
Published: over 3 years ago

10.3390/ijns7030059

First Year of TREC-Based National SCID Screening in Sweden
Cited by: 7
Author(s): Christina Göngrich, Olov Ekwall, Mikael Sundin, Nicholas Brodszki, Anders Fasth, Per Marits, Sam Dysting, Susanne Jönsson, Michela Barbaro, Anna Wedell, Ulrika von Döbeln, Rolf Zetterström
Software Mentions: 3
Published: about 3 years ago

10.1128/mSphere.00119-20

Molecular Mechanisms of Phosphate Stress Activation of Pseudomonas aeruginosa Quorum Sensing Systems
Cited by: 36
Author(s): Xianmin Meng, Stephen Dela Ahator, Lian-Hui Zhang
Software Mentions: 3
Published: over 4 years ago

10.1186/s13046-019-1268-y

A combined ANXA2-NDRG1-STAT1 gene signature predicts response to chemoradiotherapy in cervical cancer
Cited by: 16
Author(s): Marianna Buttarelli, Gabriele Babini, Giuseppina Raspaglio, Flavia Filippetti, Alessandra Battaglia, Alessandra Ciucci, Gabriella Ferrandina, Marco Petrillo, Carmela Marino, Mariateresa Mancuso, Anna Saran, Maria Elena Villani, Angiola Desiderio, Chiara D’Ambrosio, Andrea Scaloni, Daniela Gallo
Software Mentions: 3
Published: over 5 years ago

10.1186/s12974-020-01900-7

A1 reactive astrocytes and a loss of TREM2 are associated with an early stage of pathology in a mouse model of cerebral amyloid angiopathy
Cited by: 30
Author(s): Xavier Taylor, Pablo Cisternas, Yanwen You, Yingjian You, Shunian Xiang, Yamil Marambio, Jie Zhang, Rubén Vidal, Cristian A. Lasagna‐Reeves
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0145316

High Throughput qPCR Expression Profiling of Circulating MicroRNAs Reveals Minimal Sex- and Sample Timing-Related Variation in Plasma of Healthy Volunteers
Cited by: 27
Author(s): Catherine Mooney, Rana Raoof, Hany El‐Naggar, Amaya Sanz‐Rodriguez, Eva M. Jiménez-Mateos, David C. Henshall
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0218592

Utility of a ready-to-use PCR system for neuroendocrine tumor diagnosis
Cited by: 16
Author(s): Mark Kidd, Ignat Drozdov, Somer Matar, Nicole Gurunlian, Nicholas J. Ferranti, Anna Malczewska, Philip C. Bennett, Lisa Bodei, Irvin M. Modlin
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0257254

Knocking out TMEM38B in human foetal osteoblasts hFOB 1.19 by CRISPR/Cas9: A model for recessive OI type XIV
Cited by: 4
Author(s): Laura Leoni, Francesca Tonelli, Roberta Besio, Roberta Gioia, Francesco Moccia, Antonio Rossi, Antonella Forlino
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-021-91023-7

Gene expression changes and DNA damage after ex vivo exposure of peripheral blood cells to various CT photon spectra
Cited by: 7
Author(s): Hanns Leonhard Kaatsch, B Becker, Simone Schüle, Patrick Ostheim, K Nestler, Julia Jakobi, Barbara Schäfer, Thomas Hantke, Marc A. Brockmann, Michael Abend, Stephan Waldeck, Matthias Port, Harry Scherthan, Reinhard Ullmann
Software Mentions: 3
Published: over 3 years ago

10.1038/s41398-020-01074-z

Genome-wide association study of Alzheimer’s disease CSF biomarkers in the EMIF-AD Multimodal Biomarker Discovery dataset
Cited by: 34
Author(s): Shengjun Hong, Dmitry Prokopenko, Valerija Dobričić, Fabian Kilpert, Isabelle Bos, Stephanie J.B. Vos, Betty M. Tijms, Ulf Andréasson, Kaj Blennow, Rik Vandenberghe, Isabelle Cleynen, Silvy Gabel, Jolien Schaeverbeke, Philip Scheltens, Charlotte E. Teunissen, Ellis Niemantsverdriet, Sebastiaan Engelborghs, Giovanni B. Frisoni, Olivier Blin, Jill C. Richardson, Régis Bordet, José Luís Molinuevo, Lorena Rami, Petronella Kettunen, Anders Wallin, Alberto Lleó, Isabel Sala, Julius Popp, Gwendoline Peyratout, Pablo Martínez-Lage, Mikel Tainta, Richard Dobson, Cristina Legido‐Quigley, Kristel Sleegers, Christine Van Broeckhoven, Mara ten Kate, Frederik Barkhof, Henrik Zetterberg, Simon Lovestone, Johannes Streffer, Michael Wittig, André Franke, Rudolph E. Tanzi, Pieter Jelle Visser, Lars Bertram
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-021-86125-1

Fasciola hepatica hijacks host macrophage miRNA machinery to modulate early innate immune responses
Cited by: 19
Author(s): Nham Tran, Alison Ricafrente, Joyce To, Maria E. Lund, Tânia Monteiro Marques, Margarida Gama‐Carvalho, Krystyna Cwiklinski, John P. Dalton, Sheila Donnelly
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-021-07940-4

Gene co-expression network analysis in zebrafish reveals chemical class specific modules
Cited by: 6
Author(s): Prarthana Shankar, Ryan McClure, Katrina M. Waters, Robyn L Tanguay
Software Mentions: 3
Published: about 3 years ago

10.1038/s41598-021-86068-7

Long read, isoform aware sequencing of mouse nucleus accumbens after chronic cocaine treatment
Cited by: 3
Author(s): Molly Estill, Efrain Ribeiro, Nancy Francoeur, Melissa Smith, Robert Sebra, Szu-Ying Yeh, Ashley M. Cunningham, Eric J. Nestler, Li Shen
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0254205

Lapatinib and poziotinib overcome ABCB1-mediated paclitaxel resistance in ovarian cancer
Cited by: 5
Author(s): Joseph R. McCorkle, J Górski, Jinpeng Liu, M.B. Riggs, Anthony McDowell, Nan Lin, Chi Wang, Frederick R. Ueland
Software Mentions: 3
Published: over 3 years ago

10.1186/s40478-018-0636-8

Forced turnover of aged microglia induces an intermediate phenotype but does not rebalance CNS environmental cues driving priming to immune challenge
Cited by: 91
Author(s): Shane O'Neil, Kristina G. Witcher, Daniel B. McKim, Jonathan P. Godbout
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-020-69758-6

Regulated expression and function of the GABAB receptor in human pancreatic beta cell line and islets
Cited by: 19
Author(s): Latif Rachdi, Alicia Maugein, Séverine Pechberty, Mathieu Armanet, Juliette Hamroune, Philippe Ravassard, Stéfano Marullo, Olivier Albagli, Raphaël Scharfmann
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-21506-7

CXCL12/CXCR4-Mediated Procollagen Secretion Is Coupled To Cullin-RING Ubiquitin Ligase Activation
Cited by: 13
Author(s): Susan Patalano, Jose Antonio Rodriguez-Nieves, Cory Colaneri, Justin Cotellessa, Diego Almanza, Alisa Zhilin-Roth, Todd Riley, Jill A. Macoska
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-018-21727-w

Bronchial extracellular matrix from COPD patients induces altered gene expression in repopulated primary human bronchial epithelial cells
Cited by: 32
Author(s): Ulf Hedström, Oskar Hällgren, Lisa Öberg, Amy DeMicco, Outi Vaarala, Gunilla Westergren‐Thorsson, Xin Zhou
Software Mentions: 3
Published: over 6 years ago

10.1111/jcmm.14154

Absence of PARP‐1 affects <i>Cxcl12</i> expression by increasing DNA demethylation
Cited by: 7
Author(s): Anja Tolić, Nevena Grdović, Svetlana Dinić, Jovana Rajić, Miloš Đorđević, Marija Sinadinović, Jelena Arambašić Jovanović, Mirjana Mihailović, Goran Poznanović, Aleksandra Uskoković, Melita Vidaković
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-017-11040-3

SOCS2 Binds to and Regulates EphA2 through Multiple Mechanisms
Cited by: 3
Author(s): Carissa Pilling, Jonathan A. Cooper
Software Mentions: 3
Published: about 7 years ago

10.1038/s41598-018-33238-9

Genome-wide methylation analysis identifies ELOVL5 as an epigenetic biomarker for the risk of type 2 diabetes mellitus
Cited by: 23
Author(s): Joo-Yeon Hwang, Hyo‐Jung Lee, Min Jin Go, Han Byul Jang, Nak-Hyun Choi, Jae Bum Bae, Juan Castillo-Fernandez, Jordana T. Bell, Tim D. Spector, Hye-Ja Lee, Bong-Jo Kim
Software Mentions: 3
Published: about 6 years ago

10.1080/19490976.2021.1882926

Ethnic variability associating gut and oral microbiome with obesity in children
Cited by: 18
Author(s): Baskar Balakrishnan, Vaithinathan Selvaraju, Jun Chen, Priscilla Ayine, Lu Yang, Jeganathan Ramesh Babu, Thangiah Geetha, Veena Taneja
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-018-35653-4

BET Inhibition Improves NASH and Liver Fibrosis
Cited by: 25
Author(s): Sarah A. Middleton, Neetu Rajpal, Leanne Cutler, Palwinder K. Mander, Inmaculada Rioja, Rab K. Prinjha, Deepak K. Rajpal, Pankaj Agarwal, Vinod Kumar
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41385-020-0279-5

Sialylation and fucosylation modulate inflammasome-activating eIF2 Signaling and microbial translocation during HIV infection
Cited by: 22
Author(s): Leila B. Giron, Ceylan Tanes, Mariane H. Schleimann, Phillip A. Engen, Lisa M. Mattei, Alitzel Anzurez, Mohammad Damra, Huanjia Zhang, Kyle Bittinger, Frederic D. Bushman, Andrew V. Kossenkov, Paul W. Denton, Hiroaki Tateno, Ali Keshavarzian, Alan Landay, Mohamed Abdel‐Mohsen
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0173106

Stabilization of HIF-1α and HIF-2α, up-regulation of MYCC and accumulation of stabilized p53 constitute hallmarks of CNS-PNET animal model
Cited by: 3
Author(s): Sergey Malchenko, Simone Treiger Sredni, Yingtao Bi, Naira V. Margaryan, Jerusha Boyineni, Indra Mohanam, Tadanori Tomita, Ramana V. Davuluri, Marcelo B. Soares
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0237933

Defining the relationship between maternal care behavior and sensory development in Wistar rats: Auditory periphery development, eye opening and brain gene expression
Cited by: 5
Author(s): Jingyun Qiu, Preethi Singh, Geng Pan, Annalisa De Paolis, Frances A. Champagne, Jia Liu, Luís Cardoso, Adrián Rodríguez-Contreras
Software Mentions: 3
Published: over 4 years ago

10.1016/j.ymthe.2019.09.023

Rescue from Stx2-Producing E. coli-Associated Encephalopathy by Intravenous Injection of Muse Cells in NOD-SCID Mice
Cited by: 13
Author(s): Ryo Ozuru, Shohei Wakao, Takahiro Tsuji, Naoya Ohara, Takashi Matsuba, Muhammad Y. Amuran, Junko Isobe, Morio Iino, Naoki Nishida, Sari Matsumoto, Kimiharu Iwadate, Noriko Konishi, Kaori Yasuda, Kosuke Tashiro, Misato Hida, Arisato Yadoiwa, Shinsuke Kato, Eijiro Yamashita, Sohkichi Matsumoto, Yoichi Kurozawa, Mari Dezawa, Jun Fujii
Software Mentions: 3
Published: almost 5 years ago

10.1186/s13071-020-3986-6

Probe-based multiplex qPCR identifies blood-meal hosts in Anopheles mosquitoes from Papua New Guinea
Cited by: 7
Author(s): John B. Keven, Georgia Artzberger, Mary L. Gillies, Rex B. Mbewe, Edward D. Walker
Software Mentions: 3
Published: over 4 years ago

10.1038/s41416-021-01266-4

Frequent post-operative monitoring of colorectal cancer using individualised ctDNA validated by multiregional molecular profiling
Cited by: 6
Author(s): Mizunori Yaegashi, Takeshi Iwaya, Noriyuki Sasaki, Masashi Fujita, Ju Zhang, Doris R. Siwak, Tsuyoshi Hachiya, Kei Sato, Fumitaka Endo, Toshimoto Kimura, Koki Otsuka, Ryo Sugimoto, Tamotsu Sugai, Lance A. Liotta, Yiling Lu, Gordon B. Mills, Hidewaki Nakagawa, Satoshi Nishizuka
Software Mentions: 3
Published: over 3 years ago

10.1016/j.molmet.2019.11.009

NPY1R-targeted peptide-mediated delivery of a dual PPARα/γ agonist to adipocytes enhances adipogenesis and prevents diabetes progression
Cited by: 16
Author(s): Stefanie Wittrisch, Nora Klöting, Karin Mörl, Rima Chakaroun, Matthias Blüher, Annette G. Beck‐Sickinger
Software Mentions: 3
Published: almost 5 years ago

10.3389/fnins.2020.00081

Identification of Blood Circular RNAs as Potential Biomarkers for Acute Ischemic Stroke
Cited by: 31
Author(s): Dan Lu, Eric S. Ho, Hongcheng Mai, Jiankun Zang, Yanfang Liu, Yufeng Li, Bing Yang, Yan Ding, Chi Kwan Tsang, Anding Xu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2017.01174

Comparison among the Quantification of Bacterial Pathogens by qPCR, dPCR, and Cultural Methods
Cited by: 65
Author(s): M. Ricchi, Cristina Bertasio, Maria Beatrice Boniotti, Nadia Vicari, Simone Russo, M. Tilola, Marco A. Bellotti, Barbara Bertasi
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2020.01226

Regulation of Exopolysaccharide Production by ProE, a Cyclic-Di-GMP Phosphodiesterase in Pseudomonas aeruginosa PAO1
Cited by: 17
Author(s): Qiang Feng, Stephen Dela Ahator, Tianxing Zhou, Zhiqing Liu, Qiqi Lin, Yang Liu, Jiahui Huang, Jianuan Zhou, Lian-Hui Zhang
Software Mentions: 2
Published: over 4 years ago

10.3389/fmolb.2021.695601

SMPDL3B Predicts Poor Prognosis and Contributes to Development of Acute Myeloid Leukemia
Cited by: 2
Author(s): Huiqing Qu, Ye Zhu
Software Mentions: 2
Published: about 3 years ago

10.3389/fmicb.2018.00371

Intrahost Norovirus Evolution in Chronic Infection Over 5 Years of Shedding in a Kidney Transplant Recipient
Cited by: 12
Author(s): Andrej Steyer, Tilen Konte, Martin Sagadin, Marko Kolenc, Andrej Škoberne, Julija Germ, Tadeja Dovč-Drnovšek, Miha Arnol, Mateja Poljšak-Prijatelj
Software Mentions: 2
Published: over 6 years ago

10.3389/fimmu.2019.00984

Dual RNA-Seq Unveils Pseudomonas plecoglossicida htpG Gene Functions During Host-Pathogen Interactions With Epinephelus coioides
Cited by: 22
Author(s): Lixing Huang, Lingmin Zhao, Wenjia Liu, Xiaojin Xu, Yongquan Su, Yingxue Qin, Qingpi Yan
Software Mentions: 2
Published: over 5 years ago

10.1186/s12915-020-00895-0

TRIM25 promotes Capicua degradation independently of ERK in the absence of ATXN1L
Cited by: 6
Author(s): Derek F. Wong, Lisa Sogerer, Samantha S. Lee, Victor Wong, Amy Lum, Adrian Levine, Marco A. Marra, Stephen Yip
Software Mentions: 2
Published: about 4 years ago

10.3389/fimmu.2020.599647

Regulation of Decay Accelerating Factor Primes Human Germinal Center B Cells for Phagocytosis
Cited by: 6
Author(s): Andy Dernstedt, Jana Leidig, Anna Holm, Priscilla F Kerkman, Jenny Mjösberg, Clas Ahlm, Johan Henriksson, Magnus Hultdin, Mattias N.E. Forsell
Software Mentions: 2
Published: almost 4 years ago

10.1155/2021/5533946

Uncovering the Mechanisms and Molecular Targets of Weibing Formula 1 against Gastritis: Coupling Network Pharmacology with GEO Database
Cited by: 4
Author(s): Ke Chen, Luojian Zhang, Qu Zhou, Feng Wan, Jia Li, Yongqiang Yang, Hui Yan, Shile Huang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12915-019-0698-5

Crystal structure of diamondback moth ryanodine receptor Repeat34 domain reveals insect-specific phosphorylation sites
Cited by: 18
Author(s): Tong Xu, Zhiguang Yuchi
Software Mentions: 2
Published: about 5 years ago

10.3389/fimmu.2020.589866

miRNA Regulation of NK Cells Antiviral Response in Children With Severe and/or Recurrent Herpes Simplex Virus Infections
Cited by: 4
Author(s): Marzena Lenart, Edyta Działo, Anna Kluczewska, Kazimierz Węglarczyk, Anna Szaflarska, Magdalena Rutkowska-Zapała, Marcin Surmiak, Marek Sanak, Anna Pituch‐Noworolska, Maciej Siedlar
Software Mentions: 2
Published: almost 4 years ago

10.3389/fimmu.2020.01388

A Novel α/β Hydrolase Domain Protein Derived From Haemonchus contortus Acts at the Parasite-Host Interface
Cited by: 10
Author(s): Mingmin Lu, Xiaowei Tian, Ai-Ling Tian, Charles Li, Yan Ren, Lixin Xu, Xiaoling Song, Xiangrui Li
Software Mentions: 2
Published: over 4 years ago

10.3389/fimmu.2020.550624

Combining Host Genetics and Functional Analysis to Depict Inflammasome Contribution in Tuberculosis Susceptibility and Outcome in Endemic Areas
Cited by: 5
Author(s): Dhêmerson Souza de Lima, Caio César Barbosa Bomfim, Vinícius Nunes Cordeiro Leal, Edione C. Reis, José Soares, Fernanda Pereira Fernandes, Eduardo Pinheiro Amaral, Flávio Vieira Loures, Maurício Morishi Ogusku, Maria Regina D’Império Lima, Aya Sadahiro, Alessandra Pontillo
Software Mentions: 2
Published: about 4 years ago

10.3389/fgene.2021.666106

ESPL1 Is a Novel Prognostic Biomarker Associated With the Malignant Features of Glioma
Cited by: 5
Author(s): Zhendong Liu, Xiaoyu Lian, Xiuru Zhang, Yongjie Zhu, Wang Zhang, Jialin Wang, Hongbo Wang, Binfeng Liu, Zhishuai Ren, Mengjun Zhang, Mingyang Li, Yanzheng Gao
Software Mentions: 2
Published: about 3 years ago

10.1186/s12859-017-1991-3

Strategies for identification of somatic variants using the Ion Torrent deep targeted sequencing platform
Cited by: 18
Author(s): Aditya Deshpande, Wenhua Liu, Tina L. McDowell, Smruthy Sivakumar, Jiexin Zhang, Jing Wang, F. Anthony San Lucas, Jerry Fowler, Humam Kadara, Paul Scheet
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13293-018-0177-7

Sex-specific microRNA expression networks in an acute mouse model of ozone-induced lung inflammation
Cited by: 53
Author(s): Nathalie Fuentes, Arpan Roy, Vikas Mishra, Noe Cabello, Patricia Silveyra
Software Mentions: 2
Published: over 6 years ago

10.1242/bio.043372

Unanchored ubiquitin chains do not lead to marked alterations in gene expression in<i>Drosophila melanogaster</i>
Cited by: 6
Author(s): Jessica R. Blount, Danielle Meyer, Camille Akemann, Sean L. Johnson, Katherine Gurdziel, Tracie R. Baker, Sokol V. Todi
Software Mentions: 2
Published: almost 6 years ago

10.3389/fcimb.2017.00253

Chlamydia trachomatis Infection Is Associated with E-Cadherin Promoter Methylation, Downregulation of E-Cadherin Expression, and Increased Expression of Fibronectin and α-SMA—Implications for Epithelial-Mesenchymal Transition
Cited by: 18
Author(s): Jovana Rajić, Aleksandra Inić-Kanada, Elisabeth Stein, Svetlana Dinić, Nadine Schuerer, Aleksandra Uskoković, Ehsan Ghasemian, Mirjana Mihailović, Melita Vidaković, Nevena Grdović, Talin Barisani-Asenbauer
Software Mentions: 2
Published: over 7 years ago

10.3389/fcimb.2020.591751

cheA, cheB, cheR, cheV, and cheY Are Involved in Regulating the Adhesion of Vibrio harveyi
Cited by: 17
Author(s): Xiaojin Xu, Huiyao Li, Xin Qi, Yunong Chen, Yingxue Qin, Jiang Zheng, Xinglong Jiang
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13072-019-0318-1

Reduced H3K27me3 leads to abnormal Hox gene expression in neural tube defects
Cited by: 25
Author(s): Jianhua Yu, Lei Wang, Pei Pei, Xue Li, Jianxin Wu, Zhiyong Qiu, Juan Zhang, Ruifang Ao, Shan Wang, Ting Zhang, Jun Xie
Software Mentions: 2
Published: almost 5 years ago

10.1242/dmm.048736

Reproductive history determines <i>Erb</i> <i>b</i> <i>2</i> locus amplification, WNT signalling and tumour phenotype in a murine breast cancer model
Cited by: 2
Author(s): Liliana Ordonez, Lorenzo Melchor, Kirsty Rhian Greenow, Howard Kendrick, Giusy Tornillo, James R. Bradford, Peter Giles, Matthew J. Smalley
Software Mentions: 2
Published: over 3 years ago

10.1242/dmm.033043

SIL1, the ER Hsp70 co-chaperone, plays a critical role in maintaining skeletal muscle proteostasis and physiology
Cited by: 13
Author(s): Viraj P. Ichhaporia, Jieun Kim, Kanisha Kavdia, Peter Vogel, Linda H. Horner, Sharon Frase, Linda M. Hendershot
Software Mentions: 2
Published: almost 7 years ago

10.3389/fcell.2020.544043

Comparative Transcriptional Profiling of Motor Neuron Disorder-Associated Genes in Various Human Cell Culture Models
Cited by: 8
Author(s): Stefan Hauser, Stefanie Schuster, Elena Heuten, Philip Höflinger, Jakob Admard, Yvonne Schelling, Ana Velić, Boris Maček, Stephan Ossowski, Lüdger Schöls
Software Mentions: 2
Published: about 4 years ago

10.3389/fphar.2021.705617

Oroxylin a Attenuates Limb Ischemia by Promoting Angiogenesis via Modulation of Endothelial Cell Migration
Cited by: 2
Author(s): Lusha Zhang, Lu Chen, Chunxiao Li, Hong Shi, Qianyi Wang, Wenjie Yang, Leyu Fang, Yuze Leng, Wei Sun, Mengyao Li, Yuejin Xue, Xiumei Gao, Hong Wang
Software Mentions: 2
Published: over 3 years ago

10.3390/microorganisms7120682

Temperature Effects on Methanogenesis and Sulfidogenesis during Anaerobic Digestion of Sulfur-Rich Macroalgal Biomass in Sequencing Batch Reactors
Cited by: 17
Author(s): Heejung Jung, Jaai Kim, Changsoo Lee
Software Mentions: 2
Published: almost 5 years ago

10.3390/microorganisms9050884

Bovine Milk Oligosaccharides and Human Milk Oligosaccharides Modulate the Gut Microbiota Composition and Volatile Fatty Acid Concentrations in a Preclinical Neonatal Model
Cited by: 10
Author(s): Mei Wang, Marcia H. Monaco, Jonas Hauser, Jian Yan, Ryan N. Dilger, Sharon M. Donovan
Software Mentions: 2
Published: over 3 years ago

10.3390/diagnostics11010053

Nucleic Acid-Based Diagnostic Tests for the Detection SARS-CoV-2: An Update
Cited by: 60
Author(s): Choo Yee Yu, Kok Gan Chan, Chan Yean Yean, Geik Yong Ang
Software Mentions: 2
Published: almost 4 years ago

10.3390/microorganisms9050893

Baicalein and Baicalin Inhibit SARS-CoV-2 RNA-Dependent-RNA Polymerase
Cited by: 70
Author(s): Keivan Zandi, Katie Musall, Adrian Oo, Dong Cao, Bo Liang, Pouya Hassandarvish, Shuiyun Lan, Ryan L. Slack, Karen A. Kirby, Leda Bassit, Franck Amblard, Baek Kim, Sazaly AbuBakar, Stefan G. Sarafianos, Raymond F. Schinazi
Software Mentions: 2
Published: over 3 years ago

10.1016/j.crbiot.2020.03.001

Restoration of wild-type motility to flagellin-knockout Escherichia coli by varying promoter, copy number and induction strength in plasmid-based expression of flagellin
Cited by: 3
Author(s): Nicholas M. Thomson, Mark J. Pallen
Software Mentions: 2
Published: about 4 years ago

10.3390/diagnostics11091697

Investigation of Therapeutic Response Markers for Acupuncture in Parkinson’s Disease: An Exploratory Pilot Study
Cited by: 4
Author(s): Sang Min Park, Aeyung Kim, Gunhyuk Park, Ojin Kwon, Sang-Soo Park, Ho-Ryong Yoo, Jung‐Hee Jang
Software Mentions: 2
Published: about 3 years ago

10.3390/microorganisms8091443

Transcriptome Profiling of Potato (Solanum tuberosum L.) Responses to Root-Knot Nematode (Meloidogyne javanica) Infestation during A Compatible Interaction
Cited by: 8
Author(s): Teresia Nyambura Macharia, Daniel Bellieny-Rabelo, Lucy N. Moleleki
Software Mentions: 2
Published: about 4 years ago

10.3390/mi9120660

Separation and Characterization of Prostate Cancer Cell Subtype according to Their Motility Using a Multi-Layer CiGiP Culture
Cited by: 9
Author(s): Linxiang Wang, Ying Zhou, Jingjing Fu, Zhisong Lu
Software Mentions: 2
Published: almost 6 years ago

10.1038/s42003-021-02085-2

Environmental DNA monitoring of oncogenic viral shedding and genomic profiling of sea turtle fibropapillomatosis reveals unusual viral dynamics
Cited by: 16
Author(s): Jessica Farrell, Kelsey Yetsko, Liam Whitmore, Jenny Whilde, Catherine B. Eastman, Devon Rollinson Ramia, Rachel Thomas, Paul J. Linser, Simon Creer, Brooke Burkhalter, Christine E. Schnitzler, David J. Duffy
Software Mentions: 2
Published: over 3 years ago

10.1042/CS20210628

Exposure to cigarette smoke precipitates simple hepatosteatosis to NASH in high-fat diet fed mice by inducing oxidative stress
Cited by: 4
Author(s): Sherouk Fouda, Anwar Khan, Stanley M H Chan, Ali Mahzari, Xin Zhou, Cheng Xue Qin, Ross Vlahos, Ji-Ming Ye
Software Mentions: 2
Published: about 3 years ago

10.3390/antiox10010093

Association of Metabolically Healthy and Unhealthy Obesity Phenotypes with Oxidative Stress Parameters and Telomere Length in Healthy Young Adult Men. Analysis of the MAGNETIC Study
Cited by: 13
Author(s): Mateusz Lejawa, Kamila Osadnik, Tadeusz Osadnik, Natalia Pawlas
Software Mentions: 2
Published: almost 4 years ago

10.1016/j.cub.2020.12.014

femaleless Controls Sex Determination and Dosage Compensation Pathways in Females of Anopheles Mosquitoes
Cited by: 24
Author(s): Elzbieta Krzywińska, Luca Ferretti, Jianwei Li, Jian-Chiuan Li, Chun Hong Chen, Jaroslaw Krzywinski
Software Mentions: 2
Published: over 3 years ago

10.1186/s40168-020-00916-8

Disruption of ruminal homeostasis by malnutrition involved in systemic ruminal microbiota-host interactions in a pregnant sheep model
Cited by: 26
Author(s): Yanfeng Xue, Limei Lin, Fan Hu, Weiyun Zhu, Shengyong Mao
Software Mentions: 2
Published: about 4 years ago

10.1186/s40168-017-0317-z

Optimization and validation of sample preparation for metagenomic sequencing of viruses in clinical samples
Cited by: 41
Author(s): Dagmara W. Lewandowska, Osvaldo Zagordi, Fabienne-Desirée Geissberger, Verena Kufner, Stefan Schmutz, Jürg Böni, Karin J. Metzner, Alexandra Trkola, Michael Huber
Software Mentions: 2
Published: over 7 years ago