Ecosyste.ms: Papers

10.3390/v12020162

Regulation of Transcription Factor E2-2 in Human Plasmacytoid Dendritic Cells by Monocyte-Derived TNFα
Cited by: 3
Author(s): Hannah K Dewald, Patricia Fitzgerald-Bocarsly, Patricia Fitzgerald-Bocarsly
Software Mentions: 1
Published: almost 5 years ago

10.3390/v12030325

Coxsackievirus B3 Infection of Human Neural Progenitor Cells Results in Distinct Expression Patterns of Innate Immune Genes
Cited by: 14
Author(s): Soo Jin Oh, Jeong An Gim, Jae Kyung Lee, Hosun Park, Ok Sarah Shin
Software Mentions: 1
Published: over 4 years ago

10.3390/v12050511

An RNA-Directed Gene Editing Strategy for Attenuating the Infectious Potential of Feline Immunodeficiency Virus-Infected Cells: A Proof of Concept
Cited by: 4
Author(s): Brian G Murphy, Tatiana Wolf, Helena Vogel, Diego Castillo, Kevin D. Woolard
Software Mentions: 1
Published: over 4 years ago

10.3390/v12090978

A Targeted Metagenomics Approach to Study the Diversity of Norovirus GII in Shellfish Implicated in Outbreaks
Cited by: 12
Author(s): Marion Desdouits, Candice Wacrenier, Joanna Ollivier, Julien Schaeffer, Françoise S. Le Guyader
Software Mentions: 1
Published: about 4 years ago

10.3390/v13030524

Liver-Derived Cell Transfection Model Efficacy for HBV Genotype B Replication/Transcription Is Determined by Complex Host Transcription Factor Network
Cited by: 0
Author(s): Roxanne Hui-Heng Chong, Atefeh Khakpoor, Theresa May-Chin Tan, Seng-Gee Lim, Guan Huei Lee
Software Mentions: 1
Published: over 3 years ago

10.3390/v13071202

Successful Clearance of 300 Day SARS-CoV-2 Infection in a Subject with B-Cell Depletion Associated Prolonged (B-DEAP) COVID by REGEN-COV Anti-Spike Monoclonal Antibody Cocktail
Cited by: 25
Author(s): Arnaud Drouin, Marc Theberge, Sharon Y. Liu, Allison R. Smither, Shelby M. Flaherty, Mark Zeller, Gregory P. Geba, Peter Reynaud, W. Benjamin Rothwell, Alfred Luk, Di Tian, Matthew L. Boisen, Luis M. Branco, Kristian G. Andersen, James E. Robinson, Robert F. Garry, Dahlene N. Fusco
Software Mentions: 1
Published: over 3 years ago

10.3390/v13081431

A Diverse Viral Community from Predatory Wasps in Their Native and Invaded Range, with a New Virus Infectious to Honey Bees
Cited by: 9
Author(s): Emily J. Remnant, James W. Baty, Mariana Bulgarella, Jana Dobelmann, Oliver Quinn, Monica A. M. Gruber, Philip J. Lester
Software Mentions: 1
Published: over 3 years ago

10.3390/v13081442

Sequencing a Strawberry Germplasm Collection Reveals New Viral Genetic Diversity and the Basis for New RT-qPCR Assays
Cited by: 10
Author(s): Alfredo Diaz‐Lara, Kristian Stevens, Vicki Klaassen, Min Sook Hwang, Maher Al Rwahnih
Software Mentions: 1
Published: over 3 years ago

10.3390/v13091845

Nonstructural Protein NS1 of Influenza Virus Disrupts Mitochondrial Dynamics and Enhances Mitophagy via ULK1 and BNIP3
Cited by: 7
Author(s): Jae‐Hwan Lee, Seungseok Oh, Jeanho Yun, Ok Sarah Shin
Software Mentions: 1
Published: about 3 years ago

10.12688/wellcomeopenres.15381.2

Testing the role of SOX15 in human primordial germ cell fate
Cited by: 11
Author(s): Merrick Pierson Smela, Anastasiya Sybirna, Frederick C K Wong, M. Azim Surani
Software Mentions: 1
Published: about 5 years ago

10.12688/wellcomeopenres.15207.2

Postal recruitment for genetic studies of preterm birth: A feasibility study
Cited by: 1
Author(s): O Keag, Lee Murphy, Aoibheann Bradley, Naomi Deakin, Sonia Whyte, Jane E. Norman, Sarah Stock
Software Mentions: 1
Published: over 4 years ago

10.12688/wellcomeopenres.15937.2

A blueprint for the implementation of a validated approach for the detection of SARS-Cov2 in clinical samples in academic facilities
Cited by: 7
Author(s): Sushmita Sridhar, Sally Forrest, Iain Kean, Jamie Young, Josefin Bartholdson Scott, Mailis Maes, Joana Pereira-Dias, Surendra Parmar, Matthew Routledge, Dominic Sparkes, Lucy Rivett, Gordon Dougan, Michael P. Weekes, Martin D. Curran, Ian Goodfellow, Stephen Baker
Software Mentions: 1
Published: about 4 years ago

10.12688/wellcomeopenres.16517.2

SARS-CoV-2 detection by a clinical diagnostic RT-LAMP assay
Cited by: 11
Author(s): Michael D. Buck, Enzo Z. Poirier, Ana Cardoso, Bruno Frederico, Johnathan Canton, Sam Barrell, Rupert Beale, Richard Byrne, Simon Caidan, Margaret Crawford, Laura Cubitt, Sonia Gandhi, Robert Goldstone, Paul Grant, Kiran Gulati, Steve Hindmarsh, Michael Howell, Michael Hubank, Rachael Instrell, Ming Jiang, George Kassiotis, Wei-Ting Lu, James I. MacRae, Iana Martini, Davin P. Miller, David Moore, Eleni Nastouli, Jérôme Nicod, Luke Nightingale, Jessica Olsen, Amin Oomatia, Nicola O’Reilly, Anett Rideg, Ok‐Ryul Song, Amy Strange, Charles Swanton, Samra Turajlic, Mary Wu, Caetano Reis e Sousa
Software Mentions: 1
Published: over 3 years ago

10.1111/zph.12630

<i>Toxoplasma gondii</i> in edible fishes captured in the Mediterranean basin
Cited by: 31
Author(s): Anna Maria Fausta Marino, Renato Paolo Giunta, Antonio Salvaggio, Annamaria Castello, Tiziana Alfonzetti, Antonio Barbagallo, Alessandra Aparo, Fabrizio Scalzo, Stefano Reale, Wilma Buffolano, Maurizio Percipalle
Software Mentions: 1
Published: over 5 years ago

10.1051/parasite/2018028

Analysis of <i>Dipylidium caninum</i> tapeworms from dogs and cats, or their respective fleas
Cited by: 25
Author(s): M. T. Labuschagne, Frédéric Beugnet, Steffen Rehbein, Jacques Guillot, Josephus J. Fourie, Dionne Crafford
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13071-019-3471-2

Associations between soil-transmitted helminthiasis and viral, bacterial, and protozoal enteroinfections: a cross-sectional study in rural Laos
Cited by: 16
Author(s): Anna N. Chard, Kelly K. Baker, Kevin Tsai, Karen Lévy, Jeticia R. Sistrunk, Howard H. Chang, Matthew C. Freeman
Software Mentions: 1
Published: over 5 years ago

10.1186/s13071-020-04060-y

Rapid clearance of Borrelia burgdorferi from the blood circulation
Cited by: 15
Author(s): Liucun Liang, Jinyong Wang, Lucas Schorter, Thu Phong Nguyen Trong, Shari Fell, Sebastian Ulrich, Reinhard K. Straubinger
Software Mentions: 1
Published: over 4 years ago

10.1186/s13071-021-04756-9

Development of a real-time PCR method for rapid diagnosis of canine babesiosis and anaplasmosis
Cited by: 2
Author(s): Agnija Kivrane, Agne Namiņa, Maija Selezņova, Sarmite Akopjana, Valentina Capligina, Renāte Ranka
Software Mentions: 1
Published: over 3 years ago

10.3390/pathogens9121074

TaqMan Assays for Simultaneous Detection of Bacillus anthracis and Bacillus cereus biovar anthracis
Cited by: 5
Author(s): Diansy Zincke, Michael H. Norris, Odalis Cruz, Berzhan Kurmanov, W. Scott McGraw, David J. Daegling, John Krigbaum, Thi Thu Ha Hoang, Kamil Khanipov, George Golovko, Ted L. Hadfield, Jason K. Blackburn
Software Mentions: 1
Published: almost 4 years ago

10.3390/pathogens9110963

Rat Cytomegalovirus Virion-Associated Proteins R131 and R129 Are Necessary for Infection of Macrophages and Dendritic Cells
Cited by: 1
Author(s): Iris K A Jones, Nicole Haese, Philippe Gatault, Zachary J. Streblow, Takeshi F. Andoh, Michael Denton, Cassilyn E. Streblow, Kiley Bonin, Craig N. Kreklywich, Jennifer M. Burg, Susan L. Orloff, Daniel N. Streblow
Software Mentions: 1
Published: about 4 years ago

10.3390/pathogens9121038

Evaluation of West Nile Virus Diagnostic Capacities in Veterinary Laboratories of the Mediterranean and Black Sea Regions
Cited by: 6
Author(s): Elisa Pérez‐Ramírez, Cristina Cano-Gómez, Francisco Rubio Llorente, Ani Vodica, Ljubiša Veljović, Natela Toklikishvilli, Kurtesh Sherifi, Soufien Sghaier, Amel Omani, Aida Kustura, Kiril Krstevski, Ilke Karayel-Hacioglu, Naglaa Mohamed Hagag, Jeanne El Hage, Hasmik Davdyan, Mohd Saddam Bintarif, Bojan Adžić, Nabil Abouchoaib, Miguel Ángel Jiménez‐Clavero, Jovita Fernández-Piñero
Software Mentions: 1
Published: almost 4 years ago

10.3390/pathogens10060637

Detection of Anti-Nucleocapsid Antibody in COVID-19 Patients in Bangladesh Is not Correlated with Previous Dengue Infection
Cited by: 6
Author(s): Simon D. Lytton, Mahmuda Yeasmin, Asish Kumar Ghosh, Md. Rakibul Hassan Bulbul, Md. Maruf Ahmed Molla, Martha Herr, Helmut Duchmann, Md. Mohiuddin Sharif, Tasnim Nafisa, Robed Amin, Nur Hosen, Md. Tanvir Rahman, Sumaiya Islam, Ariful Islam, Abul Khair Mohammad Shamsuzzaman
Software Mentions: 1
Published: over 3 years ago

10.3390/pathogens10020235

In vitro–in vivo Validation of Stimulatory Effect of Oat Ingredients on Lactobacilli
Cited by: 7
Author(s): Cindy Duysburgh, Pieter Van den Abbeele, Alison Kamil, Lisa Fleige, Peter John D. De Chavez, Ying‐Hao Chu, Wiley Barton, Órla O'Sullivan, Paul D. Cotter, Karina Quilter, Susan A. Joyce, M. Katie Murphy, Gillian DunnGalvin, Timothy G. Dinan, Massimo Marzorati
Software Mentions: 1
Published: almost 4 years ago

10.1007/s12253-020-00844-w

Evaluation of Next Generation Sequencing for Detecting HER2 Copy Number in Breast and Gastric Cancers
Cited by: 27
Author(s): Dongfeng Niu, Lei Li, Yang Yu, Wanchun Zang, Zhongwu Li, Lixin Zhou, Ling Jia, Guanhua Rao, Linfeng Gao, Gang Cheng, Ke Ji, Dongmei Lin
Software Mentions: 1
Published: over 4 years ago

10.7717/peerj.5642

Genome-wide identification of new reference genes for RT-qPCR normalization in CGMMV-infected <i>Lagenaria siceraria</i>
Cited by: 10
Author(s): Chenhua Zhang, Hongying Zheng, Xinyang Wu, Heng Xu, Kelei Han, Jiejun Peng, Yuwen Lu, Lin Lin, Pei Xu, Xiaohua Wu, Guojing Li, Jianping Chen, Fei Yan
Software Mentions: 1
Published: about 6 years ago

10.3390/ph14030209

The Case for GNMT as a Biomarker and a Therapeutic Target in Pancreatic Cancer
Cited by: 2
Author(s): Zachary Heinzman, Connor Schmidt, Marek K. Sliwinski, Nalin C. W. Goonesekere
Software Mentions: 1
Published: over 3 years ago

10.3390/pharmaceutics9040040

Tissue Specific Modulation of cyp2c and cyp3a mRNA Levels and Activities by Diet-Induced Obesity in Mice: The Impact of Type 2 Diabetes on Drug Metabolizing Enzymes in Liver and Extra-Hepatic Tissues
Cited by: 20
Author(s): Sarah Maximos, Michel Chamoun, Sophie Gravel, Jacques Turgeon, Véronique Michaud
Software Mentions: 1
Published: about 7 years ago

10.3390/pharmaceutics13071095

Long-Term Oral Treatment with Non-Hypoglycemic Dose of Glibenclamide Reduces Diabetic Retinopathy Damage in the Goto-KakizakiRat Model
Cited by: 10
Author(s): Marianne Berdugo, Kimberley Delaunay, Cécile Lebon, Marie‐Christine Naud, Lolita Radet, Léa Zennaro, Émilie Picard, Alejandra Daruich, Jacques Beltrand, Elsa Kermorvant‐Duchemin, Michel Polak, Patricia Crisanti, Francine Behar‐Cohen
Software Mentions: 1
Published: over 3 years ago

10.3390/pharmaceutics13050748

Comparison of Different Liquid Chromatography-Based Purification Strategies for Adeno-Associated Virus Vectors
Cited by: 20
Author(s): Ruth Rieser, Johanna Koch, Greta Faccioli, Klaus Richter, Tim Menzen, Martin Biel, Gerhard Winter, Stylianos Michalakis
Software Mentions: 1
Published: over 3 years ago

10.14814/phy2.14853

Antisense oligonucleotide‐mediated knockdown of<i>Mpzl3</i>attenuates the negative metabolic effects of diet‐induced obesity in mice
Cited by: 3
Author(s): Beth L. Worley, Thomas Auen, Amy C. Arnold, Brett P. Monia, Nadine Hempel, Traci A. Czyzyk
Software Mentions: 1
Published: over 3 years ago

10.14814/phy2.14785

Maternal selenium deficiency in mice promotes sex‐specific changes to urine flow and renal expression of mitochondrial proteins in adult offspring
Cited by: 4
Author(s): Elliott S. Neal, Pierre Hofstee, Montana R. Askew, Nykola L. Kent, Lucy A. Bartho, Anthony V. Perkins, James Cuffe
Software Mentions: 1
Published: over 3 years ago

10.14814/phy2.14026

Modulation of the lung inflammatory response to ozone by the estrous cycle
Cited by: 27
Author(s): Nathalie Fuentes, Noe Cabello, Marvin Nicoleau, Zissis C. Chroneos, Patricia Silveyra
Software Mentions: 1
Published: over 5 years ago

10.14814/phy2.13468

Vitamin D metabolic loci and preeclampsia risk in multi-ethnic pregnant women
Cited by: 9
Author(s): Katharyn M. Baca, Manika Govil, Joseph M. Zmuda, Hyagriv N. Simhan, Mary L. Marazita, Lisa M. Bodnar
Software Mentions: 1
Published: almost 7 years ago

10.1186/s13007-019-0415-y

Evaluation of reference genes for normalizing RT-qPCR in leaves and suspension cells of Cephalotaxus hainanensis under various stimuli
Cited by: 19
Author(s): Hua Sun, Xuefei Jiang, Mengli Sun, Hanqing Cong, Fei Qiao
Software Mentions: 1
Published: over 5 years ago

10.1186/s13007-018-0295-6

Comparison of three PCR-based assays for SNP genotyping in plants
Cited by: 78
Author(s): Chiara Broccanello, Claudia Chiodi, Andrew Funk, J. Mitchell McGrath, Lee Panella, Piergiorgio Stevanato
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9020273

Comprehensive Real-Time RT-PCR Assays for the Detection of Fifteen Viruses Infecting Prunus spp.
Cited by: 12
Author(s): Alfredo Diaz‐Lara, Kristian Stevens, Vicki Klaassen, Deborah A. Golino, Maher Al Rwahnih
Software Mentions: 1
Published: almost 5 years ago

10.3390/plants8110512

Evolution of Target-Site Resistance to Glyphosate in an Amaranthus palmeri Population from Argentina and Its Expression at Different Plant Growth Temperatures
Cited by: 11
Author(s): Shiv Shankhar Kaundun, Lucy Victoria Jackson, Sarah‐Jane Hutchings, Jonathan F. Galloway, Elisabetta Marchegiani, Anushka Howell, Ryan E. Carlin, Eddie McIndoe, Daniel Tuesca, Raúl Moreno
Software Mentions: 1
Published: about 5 years ago

10.3390/plants10020261

Antibacterial Potential of Bacillus amyloliquefaciens GJ1 against Citrus Huanglongbing
Cited by: 12
Author(s): Jing Nan, Shaoran Zhang, Ling Jiang
Software Mentions: 1
Published: almost 4 years ago

10.3390/plants9111438

Antagonistic Potential of Novel Endophytic Bacillus Strains and Mediation of Plant Defense against Verticillium Wilt in Upland Cotton
Cited by: 15
Author(s): Nadeem Hasan, Ayaz Farzand, Heng Zhou, Irfan Ullah Khan, Anam Moosa, Muhammad Zubair, Na Yang, Ying Sun, Canming Tang
Software Mentions: 1
Published: about 4 years ago

10.3390/plants9040466

Validation of a Preformulated, Field Deployable, Recombinase Polymerase Amplification Assay for Phytophthora Species
Cited by: 12
Author(s): Austin G. McCoy, Timothy D. Miles, Guillaume J. Bilodeau, P. W. Woods, C. L. Blomquist, Frank N. Martin, Martin I. Chilvers
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pbio.3000896

Direct RT-qPCR detection of SARS-CoV-2 RNA from patient nasopharyngeal swabs without an RNA extraction step
Cited by: 108
Author(s): Emily A. Bruce, Meei Li Huang, Garrett A. Perchetti, Scott Tighe, Pheobe Laaguiby, Jessica Hoffman, Diana L. Gerrard, Arun Kumar Nalla, Yulun Wei, Alexander L. Greninger, Sean A. Diehl, David J. Shirley, Debra G.B. Leonard, Christopher D. Huston, Beth D. Kirkpatrick, Julie A. Dragon, Jessica W Crothers, Keith R. Jerome, Jason Botten
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pbio.3000453

Control over single-cell distribution of G1 lengths by WNT governs pluripotency
Cited by: 14
Author(s): Jaeshin Jang, Dasol Han, Mahdi Golkaram, Morgane Audouard, Guojing Liu, Daniel Bridges, Stefan Hellander, Alex Chialastri, Siddharth S. Dey, Linda R. Petzold, Kenneth S. Kosik
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.2001951

Fasting regulates EGR1 and protects from glucose- and dexamethasone-dependent sensitization to chemotherapy
Cited by: 42
Author(s): Stefano Di Biase, Hong Seok Shim, Kyung Hwa Kim, Manlio Vinciguerra, Francesca Rappa, Min Wei, Sebastian Brandhorst, Francesco Cappello, Hamed Mirzaei, Changhan Lee, Valter D. Longo
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.3000609

Snail synchronizes endocycling in a TOR-dependent manner to coordinate entry and escape from endoreplication pausing during the Drosophila critical weight checkpoint
Cited by: 22
Author(s): Jie Zeng, Nhan Huynh, Brian Phelps, Kirst King-Jones
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pgen.1008240

Defects of mitochondrial RNA turnover lead to the accumulation of double-stranded RNA in vivo
Cited by: 34
Author(s): Aleksandra Pajak, Isabelle Laine, Paula Clemente, Najla El-Fissi, F. Schober, Camilla Maffezzini, Javier Calvo‐Garrido, Rolf Wibom, Roberta Filograna, Ashish Dhir, Anna Wedell, Christoph Freyer, Anna Wredenberg
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1008136

Mck1 defines a key S-phase checkpoint effector in response to various degrees of replication threats
Cited by: 8
Author(s): Xiaoli Li, Xuejiao Jin, Sushma Sharma, Xiaojing Liu, Jiaxin Zhang, Yanling Niu, Jiani Li, Zhen Li, Jingjing Zhang, Qinhong Cao, Wenya Hou, Li-Lin Du, Beidong Liu, Huiqiang Lou
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1007348

Innovation in an E. coli evolution experiment is contingent on maintaining adaptive potential until competition subsides
Cited by: 32
Author(s): Dacia Leon, Simon D’Alton, Erik M. Quandt, Jeffrey E. Barrick
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1007847

A stress-response-related inter-compartmental signalling pathway regulates embryonic cuticle integrity in Arabidopsis
Cited by: 30
Author(s): Audrey Creff, Lysiane Brocard, Jérôme Joubès, Ludivine Taconnat, Nicolas M. Doll, Anne-Charlotte Marsollier, Stéphanie Pascal, Roberta Galletti, Sophy Boeuf, Steven Moussu, Thomas Widiez, Frédéric Domergue, Gwyneth Ingram
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pgen.1004796

Inversion of the Chromosomal Region between Two Mating Type Loci Switches the Mating Type in Hansenula polymorpha
Cited by: 38
Author(s): Hiromi Maekawa, Yoshinobu Kaneko
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pntd.0008175

Field evaluation of DNA detection of human filarial and malaria parasites using mosquito excreta/feces
Cited by: 10
Author(s): Corrado Minetti, Nils Pilotte, Michael F. Zulch, Tiago Canelas, Edward J. Tettevi, Francis B. D. Veriegh, Mike Y. Osei-Atweneboana, Steven A. Williams, Lisa J. Reimer
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pntd.0006381

Development and validation of four one-step real-time RT-LAMP assays for specific detection of each dengue virus serotype
Cited by: 48
Author(s): Benjamín López-Jimena, Michaël Bekaert, Mohammed A. Bakheit, Sieghard Frischmann, Pranav Patel, Etienne Simon‐Lorière, Louis Lambrechts, Veasna Duong, Philippe Dussart, Graham Harold, Cheikh Fall, Oumar Faye, Amadou Alpha Sall, Manfred Weidmann
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pntd.0007990

Evidence of Leptospiral Presence in the Cumberland Gap Region
Cited by: 4
Author(s): Ashutosh Verma, Brittney Beigel, Christopher Carl Smola, Susanna E. Kitts-Morgan, Daniel Kish, Paul B. Nader, Joey Morgan, Jerry R. Roberson, Undine Christmann, Karen Gruszynski, LaRoy S. E. Brandt, Ellen Cho, Kelly J. Murphy, Ryan Goss
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pntd.0006202

Joint ancestry and association test indicate two distinct pathogenic pathways involved in classical dengue fever and dengue shock syndrome
Cited by: 17
Author(s): Marisa Oliveira, Worachart Lert-itthiporn, Bruno Cavadas, Verónica Fernandes, Ampaiwan Chuansumrit, Orlando Anunciação, Isabelle Casadémont, Fanny Koeth, Marina Penova, Kanchana Tangnararatchakit, Chiea Chuen Khor, Paul Rácz, Prida Malasit, Fumihiko Matsuda, Etienne Simon‐Lorière, Prapat Suriyaphol, Luı́sa Pereira, Anavaj Sakuntabhai
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0240355

Transcriptome sequencing and endogenous phytohormone analysis reveal new insights in CPPU controlling fruit development in kiwifruit (Actinidia chinensis)
Cited by: 19
Author(s): Lin Wu, Jianbin Lan, Xiaoxue Xiang, Haiyang Xiang, Jun Zhao, Sadia Khan, Yiqing Liu
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0163219

The Challenge of Stability in High-Throughput Gene Expression Analysis: Comprehensive Selection and Evaluation of Reference Genes for BALB/c Mice Spleen Samples in the Leishmania infantum Infection Model
Cited by: 10
Author(s): Yasmina Hernandez-Santana, Eduardo Ontoria, Ana Cristina González-García, María Antonieta Quispe-Ricalde, Vicente Larraga, Basilio Valladares, Emma Carmelo
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0257908

Transcriptome profiling reveals new insights into the roles of neuronal nitric oxide synthase on macrophage polarization towards classically activated phenotype
Cited by: 1
Author(s): Ping‐An Chang, Hao Gao, Quan Sun, Xu He, Fengyu Huang
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0177220

Genetic diversity, QoI fungicide resistance, and mating type distribution of Cercospora sojina—Implications for the disease dynamics of frogeye leaf spot on soybean
Cited by: 14
Author(s): Sandesh Shrestha, Alicia Cochran, Alemu Mengistu, Kurt Lamour, Arturo Castro-Rocha, Heather Young-Kelly
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0172178

microRNA-200a silencing protects neural stem cells against cerebral ischemia/reperfusion injury
Cited by: 23
Author(s): Ji Ma, Shaofeng Shui, Xinwei Han, Dong Guo, Tengfei Li, Lei Yan
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0133158

Genetic Variants Associated with Port-Wine Stains
Cited by: 34
Author(s): Alice Frigerio, K E Wright, Whitney Wooderchak-Donahue, Oon Tian Tan, Rebecca L. Margraf, David A. Stevenson, J. Fredrik Grimmer, Pınar Bayrak-Toydemir
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0214078

Genistein treatment duration effects biomarkers of cell motility in human prostate
Cited by: 16
Author(s): Hu Zhang, Ryan R. Gordon, Wenqi Li, Ximing J. Yang, Abhinandan Pattanayak, Graham Fowler, Limin Zhang, William J. Catàlona, Yongzeng Ding, Li Xu, Xiaoke Huang, Borko Jovanovic, David L. Kelly, Haowen Jiang, Raymond C. Bergan
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0170897

Digital PCR Improves Mutation Analysis in Pancreas Fine Needle Aspiration Biopsy Specimens
Cited by: 27
Author(s): Shonan Sho, Colin M. Court, Stephen Kim, David R. Braxton, Shuang Hou, V. Raman Muthusamy, Rabindra R. Watson, Alireza Sedarat, Hsian‐Rong Tseng, James S. Tomlinson
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0239422

Immune-enhancing effects of anionic macromolecules extracted from Codium fragile coupled with arachidonic acid in RAW264.7 cells
Cited by: 7
Author(s): Chaiwat Monmai, Weerawan Rod-in, A-yeong Jang, Sang‐Min Lee, Seok-Kyu Jung, SangGuan You, Woo Jung Park
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0220146

Detection of the KIAA1549-BRAF fusion gene in cells forming microvascular proliferations in pilocytic astrocytoma
Cited by: 6
Author(s): Shinji Yamashita, Hideo Takeshima, Fumitaka Matsumoto, Kouji Yamasaki, Tsuyoshi Fukushima, Hideyuki Sakoda, Masamitsu Nakazato, Kiyotaka Saito, Asako Mizuguchi, Takashi Watanabe, Hiroyuki Ohta, Kiyotaka Yokogami
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0216599

Color morphology of Diaphorina citri influences interactions with its bacterial endosymbionts and ‘Candidatus Liberibacter asiaticus’
Cited by: 25
Author(s): Saeed Hosseinzadeh, John S. Ramsey, Marina Mann, Lily Bennett, Wayne B. Hunter, Masoud Shams-Bakhsh, David G. Hall, Michelle Heck
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0233057

The Rho-associated kinase inhibitor fasudil can replace Y-27632 for use in human pluripotent stem cell research
Cited by: 15
Author(s): Seongjun So, Yeonmi Lee, Jin-Won Choi, Sun Hee Kang, Ji Yoon Lee, Joonsung Hwang, Joosung Shin, James R. Dutton, Eul Ju Seo, Beom Hee Lee, Chong Jai Kim, Shoukhrat Mitalipov, Soo Jin Oh, Eunju Kang
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0128224

Chronic Anatabine Treatment Reduces Alzheimer’s Disease (AD)-Like Pathology and Improves Socio-Behavioral Deficits in a Transgenic Mouse Model of AD
Cited by: 24
Author(s): Megha Verma, David Belin, Ghania Ait‐Ghezala, Rena Li, Fiona Crawford, Michael Mullan, Daniel Paris
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0234009

Differential effects of Fe2+ and Fe3+ on osteoblasts and the effects of 1,25(OH)2D3, deferiprone and extracellular calcium on osteoblast viability under iron-overloaded conditions
Cited by: 12
Author(s): Kornkamon Lertsuwan, Ketsaraporn Nammultriputtar, Supanan Nanthawuttiphan, Natnicha Tannop, Jarinthorn Teerapornpuntakit, Jirawan Thongbunchoo, Narattaphol Charoenphandhu
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0221829

Mitochondrial single-stranded DNA binding protein novel de novo SSBP1 mutation in a child with single large-scale mtDNA deletion (SLSMD) clinically manifesting as Pearson, Kearns-Sayre, and Leigh syndromes
Cited by: 29
Author(s): Margaret A. Gustafson, Elizabeth McCormick, Lalith Perera, Matthew J. Longley, Renkui Bai, Jianping Kong, Matthew C. Dulik, Lishuang Shen, Amy Goldstein, Shana E. McCormack, Benjamin L. Laskin, Bart P. Leroy, Xilma R. Ortiz-González, Meredith G. Ellington, William C. Copeland, Marni J. Falk
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0182932

Identification of novel biomarkers to monitor β-cell function and enable early detection of type 2 diabetes risk
Cited by: 44
Author(s): Kirstine J. Belongie, Ele Ferrannini, Kjell Johnson, Patricia Andrade‐Gordon, Michael K. Hansen, John R. Petrie
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0149083

Airborne Influenza A Is Detected in the Personal Breathing Zone of Swine Veterinarians
Cited by: 16
Author(s): Kate O’Brien, Matthew W. Nonnenmann
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0210165

Development and validation of probe-based multiplex real-time PCR assays for the rapid and accurate detection of freshwater fish species
Cited by: 24
Author(s): Emily N. Hulley, Sujeenthar Tharmalingam, Andrew M. Zarnke, Douglas R. Boreham
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0161676

Prevalence of Propionibacterium acnes in Intervertebral Discs of Patients Undergoing Lumbar Microdiscectomy: A Prospective Cross-Sectional Study
Cited by: 60
Author(s): Ondřej Slabý, Filip Růžička, Táňa Macháčková, Radim Jančálek, Martin Smrčka, Jonathan E. Schmitz, Markéta Hermanová, Jiří Šána, Elleni Michu, John C. Baird, Fahad Ahmed, Karel Máca, Radim Lipina, Todd Alamin, Michael F. Coscia, Jerry Stonemetz, Timothy F. Witham, Garth D. Ehrlich, Ziya L. Gokaslan, Konstantinos Mavrommatis, Christof Birkenmaier, Vincent A. Fischetti, Ondřej Slabý
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0246637

Comparative performance of SARS-CoV-2 real-time PCR diagnostic assays on samples from Lagos, Nigeria
Cited by: 11
Author(s): Chika Onwuamah, Azuka Patrick Okwuraiwe, Olumuyiwa B. Salu, Joseph Ojonugwa Shaibu, Nnaemeka Ndodo, Samuel Olufemi Amoo, Leona Chika Okoli, Fehintola Ige, Rahaman A. Ahmed, Munir Akinwale Bankole, Judith Sokei, Bamidele Mutiu, James Ayorinde, Babatunde Saka, Celestina Obiekea, Nwando, Richard A. Adegbola, Sunday Omilabu, Chikwe Ihekweazu, Babatunde Lawal Salako, Rosemary Audu
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0179985

Nanofluidic digital PCR for the quantification of Norovirus for water quality assessment
Cited by: 30
Author(s): Sílvia Monteiro, Ricardo Santos
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0159490

CXCL12/CXCR4 Axis Activation Mediates Prostate Myofibroblast Phenoconversion through Non-Canonical EGFR/MEK/ERK Signaling
Cited by: 25
Author(s): Jose Antonio Rodriguez-Nieves, Susan Patalano, Diego Almanza, Mehrnaz Gharaee−Kermani, Jill A. Macoska
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0142708

Identification of microRNAs in Macaca fascicularis (Cynomolgus Monkey) by Homology Search and Experimental Validation by Small RNA-Seq and RT-qPCR Using Kidney Cortex Tissues
Cited by: 16
Author(s): Yaligara Veeranagouda, Pierrick Rival, Catherine Prades, Claire Mariet, Jean-François Léonard, Jean‐Charles Gautier, Xiaobing Zhou, Jufeng Wang, Bo Li, Marie‐Laure Ozoux, Eric Boitier
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0227586

Expression of the muscle-associated gene MYF6 in hairy cell leukemia
Cited by: 5
Author(s): Evgeny Arons, Hong Zhou, Mark Sokolsky, Daniel Gorelik, Katherine Potocka, Sarah Davies, Erin Fykes, Katherine M. Still, Daniel C. Edelman, Yonghong Wang, Paul S. Meltzer, Mark Raffeld, Adrian Wiestner, Liqiang Xi, Haowei Wang, Maryalice Stetler‐Stevenson, Constance Yuan, Robert J. Kreitman
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0243271

Full length genomic sanger sequencing and phylogenetic analysis of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) in Nigeria
Cited by: 19
Author(s): Joseph Ojonugwa Shaibu, Chika Onwuamah, Ayorinde Babatunde James, Azuka Patrick Okwuraiwe, Olufemi Samuel Amoo, Olumuyiwa B. Salu, Fehintola Ige, Gideon Liboro, Ebenezer Odewale, Leona Chika Okoli, Rahaman A. Ahmed, Dominic Achanya, Adesegun Adesesan, Oyewunmi Abosede Amuda, Judith Sokei, Bola A O Oyefolu, Babatunde Lawal Salako, Sunday Omilabu, Rosemary Audu
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0208976

The plasmid-encoded transcription factor ArdK contributes to the repression of the IMP-6 metallo-β-lactamase gene blaIMP-6, leading to a carbapenem-susceptible phenotype in the blaIMP-6-positive Escherichia coli strain A56-1S
Cited by: 8
Author(s): Takaya Segawa, Tsuyoshi Sekizuka, Satowa Suzuki, Keigo Shibayama, Mari Matsui, Makoto Kuroda
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0168246

Knockdown of CREB3/Luman by shRNA in Mouse Granulosa Cells Results in Decreased Estradiol and Progesterone Synthesis and Promotes Cell Proliferation
Cited by: 24
Author(s): Fan Zhao, Nan Wang, Yanglei Yi, Peng Lin, Kai-Fu Tang, Aihua Wang, Yaping Jin
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0216800

Caste-based differential transcriptional expression of hexamerins in response to a juvenile hormone analog in the red imported fire ant (Solenopsis invicta)
Cited by: 14
Author(s): Chloë Hawkings, Travis L. Calkins, Patricia V. Pietrantonio, Cécilia Tamborindeguy
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0200900

Grading system for periodontitis by analyzing levels of periodontal pathogens in saliva
Cited by: 16
Author(s): Eunhye Kim, Ji‐Young Joo, Yong Joo Lee, Jae-Kwon Koh, Jung-Hyeok Choi, Yerang Shin, Juok Cho, Eunha Park, JiHoon Kang, Kyusang Lee, Jong Bhak, Byung Chul Kim, Ju Youn Lee
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0211172

Selection and validation of reference genes for quantitative Real-Time PCR in Arabis alpina
Cited by: 15
Author(s): Lisa Stephan, Vicky Tilmes, Martin Hülskamp
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0229701

Democratizing water monitoring: Implementation of a community-based qPCR monitoring program for recreational water hazards
Cited by: 10
Author(s): Sydney P. Rudko, Ronald L. Reimink, Bradley Peter, Jay White, Patrick C. Hanington
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0240307

DNA damage and health effects in juvenile haddock (Melanogrammus aeglefinus) exposed to PAHs associated with oil-polluted sediment or produced water
Cited by: 11
Author(s): Sonnich Meier, Ørjan Karlsen, Jérémie Le Goff, Lisbet Sørensen, Elin Sørhus, Daniela M. Pampanin, Carey E. Donald, Per Gunnar Fjelldal, Evgenia Dunaevskaya, Marta Romano, Ilaria Caliani, Silvia Casini, André Sture Bogevik, Pål A. Olsvik, Mark S. Myers, Bjørn Einar Grøsvik
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pone.0177182

Inflammation-related microRNA expression level in the bovine milk is affected by mastitis
Cited by: 48
Author(s): Yu‐Chang Lai, T. Fujikawa, Tadashi Maemura, Takaaki Ando, Go Kitahara, Yasuyuki Endo, Osamu Yamato, Masateru Koiwa, Chikara Kubota, Naoki Miura
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0221512

Deficiency of emerin contributes differently to the pathogenesis of skeletal and cardiac muscles in LmnaH222P/H222P mutant mice
Cited by: 8
Author(s): Eitaro Wada, Megumi Kato, Katsuhisa Yamashita, Hiroko Kokuba, Wen‐Chen Liang, Gisèle Bonne, Yukiko Hayashi
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0206155

The zebrafish orthologue of familial Alzheimer’s disease gene PRESENILIN 2 is required for normal adult melanotic skin pigmentation
Cited by: 24
Author(s): Haowei Jiang, Morgan Newman, Michael Lardelli
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pone.0184233

Cerebrovascular gene expression in spontaneously hypertensive rats
Cited by: 6
Author(s): Anne-Sofie Grell, Simona Denise Frederiksen, Lars Edvinsson, Saema Ansar
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0176680

Plasmatic extracellular vesicle microRNAs in malignant pleural mesothelioma and asbestos-exposed subjects suggest a 2-miRNA signature as potential biomarker of disease
Cited by: 62
Author(s): Tommaso Cavalleri, Laura Angelici, Chiara Favero, Laura Dioni, Carolina Mensi, Claudia Bareggi, Alessandro Palleschi, Alessandro Rimessi, Dario Consonni, Lorenzo Bordini, Aldo Todaro, Valentina Bollati, Angela Cecilia Pesatori
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0212708

Earlier relapse detection after allogeneic haematopoietic stem cell transplantation by chimerism assays: Digital PCR versus quantitative real-time PCR of insertion/deletion polymorphisms
Cited by: 26
Author(s): Jennifer Valero-García, María del Carmen González-Espinosa, Manuel Barrios, Greta Carmona‐Antoñanzas, Javier Garcı́a-Planells, Carlos Ruiz-Lafora, Ainhoa Fuentes-Gálvez, Antonio Jiménez-Velasco
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0225262

The detection of a non-anemophilous plant species using airborne eDNA
Cited by: 27
Author(s): Mark D. Johnson, Robert D. Cox, Matthew A. Barnes
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0157998

Circulating MicroRNAs: Association with Lung Function in Asthma
Cited by: 50
Author(s): Alvin T. Kho, Sunita Sharma, Joel Davis, Joseph Spina, Dagnie C. Howard, Kevin McEnroy, Kip G. Moore, Jody S. Sylvia, Weiliang Qiu, Scott T. Weiss, Kelan G. Tantisira
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0251188

Overexpression of oncogenic H-Ras in hTERT-immortalized and SV40-transformed human cells targets replicative and specialized DNA polymerases for depletion
Cited by: 2
Author(s): Wei-Chung Tsao, Raquel Buj, Katherine M. Aird, Julia M. Sidorova, Kristin A. Eckert
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0208862

Characterization of grapevine leafroll-associated virus 3 genetic variants and application towards RT-qPCR assay design
Cited by: 37
Author(s): Alfredo Diaz‐Lara, Vicki Klaassen, Kristian Stevens, Mysore R. Sudarshana, Adib Rowhani, Hans J. Maree, Kar Mun Chooi, Arnaud Blouin, Nuredin Habili, Yashu Song, Kamyar Aram, K. Arnold, Monica L. Cooper, Lynn Wunderlich, Mark C. Battany, Larry J. Bettiga, Rhonda J. Smith, Rachelle Bester, Huogen Xiao, Bin Meng, John E. Preece, Deborah A. Golino, Maher Al Rwahnih
Software Mentions: 1
Published: almost 6 years ago

10.1371/journal.pone.0127526

Transcripts and MicroRNAs Responding to Salt Stress in Musa acuminata Colla (AAA Group) cv. Berangan Roots
Cited by: 43
Author(s): Wan Sin Lee, Ranganath Gudimella, George T.F. Wong, Martti T. Tammi, Norzulaani Khalid, Jennifer Ann Harikrishna
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0232237

Effect of 8-week of dietary micronutrient supplementation on gene expression in elite handball athletes
Cited by: 5
Author(s): Jorge Molina-López, María Antonieta Quispe Ricalde, Bernardo Hernández, Antonio Planells, Roberto Otero, Elena Planells
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0252789

Development of an efficient one-step real-time reverse transcription polymerase chain reaction method for severe acute respiratory syndrome-coronavirus-2 detection
Cited by: 4
Author(s): Yukiko Nakura, Heng Ning Wu, Yuya Okamoto, Muneyuki Takeuchi, Koichiro Suzuki, Yoshitaka Tamura, Yuichiro Oba, Fumiko Nishiumi, Nobuaki Hatori, Shinsuke Fujiwara, Kiyoshi Yasukawa, Shinobu Ida, Itaru Yanagihara
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0230174

Are bacteria potential sources of fish environmental DNA?
Cited by: 1
Author(s): Kei Nukazawa, Kentaro Akahoshi, Yoshihiro Suzuki
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0177724

Using eDNA to detect the distribution and density of invasive crayfish in the Honghe-Hani rice terrace World Heritage site
Cited by: 33
Author(s): Wei Cai, Zhuxin Ma, Chunyan Yang, Lin Wang, Wenzhi Wang, Gui‐Gang Zhao, Yupeng Geng, Douglas W. Yu
Software Mentions: 1
Published: over 7 years ago