Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Pyvolve

https://packages.ecosyste.ms/registries/pypi.org/packages/Pyvolve

Sequence simulation along phylogenies according to continuous-time Markov models
34 versions
Latest release: almost 3 years ago
1 dependent package
116 downloads last month

Papers Mentioning Pyvolve 7

10.1371/journal.pone.0139047

Pyvolve: A Flexible Python Module for Simulating Sequences along Phylogenies
Cited by: 83
Author(s): Scott R. Spielman, Claus O. Wilke
Software Mentions: 4
Published: almost 9 years ago

Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferences
Cited by: 16
Author(s): Katharine S. Walter, Caroline Colijn, Ted Cohen, Barun Mathema, Qingyun Liu, Jolene R. Bowers, David M. Engelthaler, Apurva Narechania, Darrin Lemmer, Júlio Croda, Jason R Andrews
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0166991

dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in Trees
Cited by: 2
Author(s): Michael J. Wise
Software Mentions: 2
Published: almost 8 years ago

10.1093/gigascience/giy148

Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequences
Cited by: 17
Author(s): Chris-André Leimeister, Jendrik Schellhorn, Svenja Dörrer, Michael Gerth, Christoph Bleidorn, Burkhard Morgenstern
Software Mentions: 2
Published: almost 6 years ago

10.1016/j.jbc.2021.100872

Binding of single-mutant epidermal growth factor (EGF) ligands alters the stability of the EGF receptor dimer and promotes growth signaling
Cited by: 3
Author(s): Stefano Pascarelli, Dalmira Merzhakupova, Gen-ichiro Uechi, Paola Laurino
Software Mentions: 1
Published: about 3 years ago

10.1186/s12862-016-0688-y

Cross-validation to select Bayesian hierarchical models in phylogenetics
Cited by: 15
Author(s): Sebastián Duchêne, David A. Duchêne, Francesca Di Giallonardo, John‐Sebastian Eden, Jemma L. Geoghegan, Kathryn E. Holt, Simon Y. W. Ho, Edward C. Holmes
Software Mentions: 1
Published: over 8 years ago

10.1093/bioinformatics/btz710

Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages
Cited by: 21
Author(s): Adrián Davín, Théo Tricou, Éric Tannier, Damien M. de Vienne, Gergely J. Szöllősi
Software Mentions: 1
Published: almost 5 years ago