Projects: pypi: Pyvolve
https://packages.ecosyste.ms/registries/pypi.org/packages/Pyvolve
Sequence simulation along phylogenies according to continuous-time Markov models
34 versions
Latest release: over 3 years ago
1 dependent package
116 downloads last month
Enhanced Analysis
Educational Contributors:
stephanie.spielman@utexas.edu
spielman@rowan.edu
sjs3495@phylocluster.ccbb.utexas.edu
wilke@austin.utexas.edu
Repository Activity:
Repository Owner:
Stephanie (user)
Computational biologist and data scientist
Computational biologist and data scientist
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+80
Educational commit emails
4 contributors with educational email addresses -
+6
Science terms in README
3 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-15
No science keywords
No scientific terms found in keywords/classifiers
Very Likely Science (100)
Papers Mentioning Pyvolve 7
10.1371/journal.pone.0139047
Pyvolve: A Flexible Python Module for Simulating Sequences along PhylogeniesCited by: 83
Author(s): Scott R. Spielman, Claus O. Wilke
Software Mentions: 4
Published: almost 10 years ago
10.1099/mgen.0.000418
Genomic variant-identification methods may alter Mycobacterium tuberculosis transmission inferencesCited by: 16
Author(s): Katharine S. Walter, Caroline Colijn, Ted Cohen, Barun Mathema, Qingyun Liu, Jolene R. Bowers, David M. Engelthaler, Apurva Narechania, Darrin Lemmer, Júlio Croda, Jason R Andrews
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pone.0166991
dCITE: Measuring Necessary Cladistic Information Can Help You Reduce Polytomy Artefacts in TreesCited by: 2
Author(s): Michael J. Wise
Software Mentions: 2
Published: over 8 years ago
10.1093/gigascience/giy148
Prot-SpaM: fast alignment-free phylogeny reconstruction based on whole-proteome sequencesCited by: 17
Author(s): Chris-André Leimeister, Jendrik Schellhorn, Svenja Dörrer, Michael Gerth, Christoph Bleidorn, Burkhard Morgenstern
Software Mentions: 2
Published: over 6 years ago
10.1016/j.jbc.2021.100872
Binding of single-mutant epidermal growth factor (EGF) ligands alters the stability of the EGF receptor dimer and promotes growth signalingCited by: 3
Author(s): Stefano Pascarelli, Dalmira Merzhakupova, Gen-ichiro Uechi, Paola Laurino
Software Mentions: 1
Published: about 4 years ago
10.1186/s12862-016-0688-y
Cross-validation to select Bayesian hierarchical models in phylogeneticsCited by: 15
Author(s): Sebastián Duchêne, David A. Duchêne, Francesca Di Giallonardo, John‐Sebastian Eden, Jemma L. Geoghegan, Kathryn E. Holt, Simon Y. W. Ho, Edward C. Holmes
Software Mentions: 1
Published: about 9 years ago
10.1093/bioinformatics/btz710
Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linagesCited by: 21
Author(s): Adrián Davín, Théo Tricou, Éric Tannier, Damien M. de Vienne, Gergely J. Szöllősi
Software Mentions: 1
Published: almost 6 years ago