10.22037/ijpr.2019.1100646

Characterization of Novel Fragment Antibodies Against TNF-alpha Isolated Using Phage Display Technique.
Cited by: 2
Author(s): Ali Akbar Alizadeha, Maryam Hamzeh‐Mivehroud, Elnaz Haddad, Nazanin Haddad, Mehdi Sharifi, Samaneh Mohammadi, Samira Pourtaghi‐Anvarian, Siavoush Dastmalchi
Software Mentions: 2
Published: almost 8 years ago

10.1007/s13205-014-0274-1

Structure-based function analysis of putative conserved proteins with isomerase activity from Haemophilus influenzae
Cited by: 13
Author(s): Mohd Shahbaaz, Faizan Ahmad
Software Mentions: 2
Published: almost 12 years ago

10.3390/antiox9020180

Pharmacological Targets of Kaempferol Within Inflammatory Pathways—A Hint Towards the Central Role of Tryptophan Metabolism
Cited by: 15
Author(s): Stefanie Hofer, Simon Geisler, Rebecca Lisandrelli, Huu Tung Nguyen, Markus Ganzera, Harald Schennach, Dietmar Fuchs, Julian E. Fuchs, Johanna M. Gostner, Katharina Kurz
Software Mentions: 2
Published: over 6 years ago

10.1107/S0907444913028473

Structural basis of SUFU–GLI interaction in human Hedgehog signalling regulation
Cited by: 54
Author(s): Amy L. Cherry, Csaba Finta, Mikael Karlström, Qianren Jin, Thomas Schwend, Juan Astorga‐Wells, Roman A. Zubarev, Mark Del Campo, Angela Criswell, Daniele de Sanctis, Luca Jovine, Rune Toftgård
Software Mentions: 2
Published: almost 13 years ago

10.1021/acs.jmedchem.1c00663

Xanthine Derivatives Reveal an Allosteric Binding Site in Methylenetetrahydrofolate Dehydrogenase 2 (MTHFD2)
Cited by: 7
Author(s): Lung-Chun Lee, Yi-Hui Peng, Hsin-Huei Chang, Tsu Hsu, Chih Heng Lu, Chiung‐Shiann Huang, Ching-Cheng Hsueh, Fang-Chun Kung, Ching‐Chuan Kuo, Weir‐Torn Jiaang, Su-Ying Wu
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.39611

Multiple serine transposase dimers assemble the transposon-end synaptic complex during IS607-family transposition
Cited by: 6
Author(s): Wenyang Chen, Sridhar Mandali, S.P. Hancock, Pramod Kumar, Michael Collazo, Duilio Cascio, Reid C. Johnson
Software Mentions: 2
Published: about 8 years ago

10.7554/eLife.46986

Cryo-EM structures and functional characterization of murine Slc26a9 reveal mechanism of uncoupled chloride transport
Cited by: 83
Author(s): Justin D. Walter, Marta Sawicka, Raimund Dutzler
Software Mentions: 2
Published: about 7 years ago

10.1107/S0907444913011438

Structure determination of an 11-subunit exosome in complex with RNA by molecular replacement
Cited by: 7
Author(s): Debora L. Makino, Elena Conti
Software Mentions: 2
Published: about 13 years ago

10.7554/eLife.46112

An engineered monomer binding-protein for α-synuclein efficiently inhibits the proliferation of amyloid fibrils
Cited by: 45
Author(s): Emil Dandanell Agerschou, Patrick Flagmeier, Theodora Saridaki, Céline Galvagnion, Daniel Komnig, Laetitia Heid, Vibha Prasad, Hamed Shaykhalishahi, Dieter Willbold, Christopher M. Dobson, Aaron Voigt, Bjoern Falkenburger, Wolfgang Hoyer, Alexander K. Buell
Software Mentions: 2
Published: about 7 years ago

10.1107/S2059798317018289

The deduced role of a chitinase containing two nonsynergistic catalytic domains
Cited by: 16
Author(s): Tian Liu, Weixing Zhu, Jing Wang, Yong Zhou, Yanwei Duan, Mingli Qu, Qing Yang
Software Mentions: 2
Published: almost 9 years ago

10.7554/eLife.68579

Live-cell single-molecule tracking highlights requirements for stable Smc5/6 chromatin association in vivo
Cited by: 18
Author(s): Thomas J. Etheridge, Desirée Villahermosa, Eduard Campillo-Funollet, Alex Herbert, Anja Irmisch, Adam T. Watson, Hung Quang Dang, Mark Osborne, Antony W. Oliver, Johanne M. Murray
Software Mentions: 2
Published: over 5 years ago

10.7554/eLife.38958

Unified mechanisms for self-RNA recognition by RIG-I Singleton-Merten syndrome variants
Cited by: 24
Author(s): Charlotte Lässig, Katja Lammens, Jacob Lucián Gorenflos López, Sebastian Michalski, Olga Fettscher, Karl‐Peter Hopfner
Software Mentions: 2
Published: about 8 years ago

10.1107/S0907444910007493

Features and development of <i>Coot</i>
Cited by: 21,554
Author(s): Paul Emsley, Bernhard Lohkamp, William G. Scott, Kevin Cowtan
Software Mentions: 2
Published: over 16 years ago

10.7554/eLife.57127

Structure of substrate-bound SMG1-8-9 kinase complex reveals molecular basis for phosphorylation specificity
Cited by: 20
Author(s): L.M. Langer, Yair Gat, Fabien Bonneau, Elena Conti
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.43630

Importin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperone
Cited by: 40
Author(s): Abhilash Padavannil, Prithwijit Sarkar, Seung Joong Kim, Tolga Çağatay, Jenny Jiou, Chad A. Brautigam, Diana R. Tomchick, Andrej Šali, Sheena D’Arcy, Yuh Min Chook
Software Mentions: 2
Published: over 7 years ago

10.1107/S2059798319010027

Structural comparison of protiated, H/D-exchanged and deuterated human carbonic anhydrase IX
Cited by: 11
Author(s): Katarina Koruza, Bénédicte Lafumat, Maria Nyblom, Brian P. Mahon, Wolfgang Knecht, Robert McKenna, S.Z. Fisher
Software Mentions: 2
Published: about 7 years ago

10.3390/biom10040518

A Proof-of-Concept Fragment Screening of a Hit-Validated 96-Compounds Library against Human Carbonic Anhydrase II
Cited by: 5
Author(s): Steffen Glöckner, A. Heine, G. Klebe
Software Mentions: 2
Published: over 6 years ago

10.7554/eLife.62117

Structural basis for transcription complex disruption by the Mfd translocase
Cited by: 31
Author(s): Jin Young Kang, Eliza Llewellyn, James Chen, Paul Dominic B. Olinares, Joshua Brewer, Brian T. Chait, Elizabeth A. Campbell, Seth A. Darst
Software Mentions: 2
Published: over 5 years ago

10.1128/AEM.00449-17

Rational Engineering of a Cold-Adapted α-Amylase from the Antarctic Ciliate Euplotes focardii for Simultaneous Improvement of Thermostability and Catalytic Activity
Cited by: 31
Author(s): Guang Yang, Hua Yang, Matteo Mozzicafreddo, Patrizia Ballarini, Sandra Pucciarelli, Cristina Miceli
Software Mentions: 2
Published: over 9 years ago

10.7554/eLife.41845

Cryo-EM structure of the mechanically activated ion channel OSCA1.2
Cited by: 106
Author(s): Sebastian Jojoa-Cruz, Kei Saotome, Swetha E. Murthy, Che Chun Tsui, Mark S. P. Sansom, Ardem Patapoutian, Andrew B. Ward
Software Mentions: 2
Published: almost 8 years ago

10.3390/ijms130810010

Effects of a Buried Cysteine-To-Serine Mutation on Yeast Triosephosphate Isomerase Structure and Stability
Cited by: 6
Author(s): Alejandra Hernández-Santoyo, Lenin Domínguez-Ramírez, César A. Reyes-López, Edith González-Mondragón, Andrés Hernández‐Arana, Adela Rodrı́guez-Romero
Software Mentions: 2
Published: about 14 years ago

10.3390/ijms16059354

A Moonlighting Human Protein Is Involved in Mitochondrial Import of tRNA
Cited by: 19
Author(s): Maria V. Baleva, Gowher Ali, Piotr Kamenski, Ivan Tarassov, Nina Entelis, Benoı̂t Masquida
Software Mentions: 2
Published: over 11 years ago

10.3389/fcell.2020.00543

Structural and Virus Regulatory Insights Into Avian N6-Methyladenosine (m6A) Machinery
Cited by: 8
Author(s): Mahmoud Bayoumi, Mohammed A. Rohaim, Muhammad Munir
Software Mentions: 2
Published: about 6 years ago

10.3389/fbioe.2021.674211

Pepblock Builder VR – An Open-Source Tool for Gaming-Based Bio-Edutainment in Interactive Protein Design
Cited by: 6
Author(s): Venkata V. B. Yallapragada, Tao Xu, Sidney P. Walker, Sabin Tabirca, Mark Tangney
Software Mentions: 2
Published: over 5 years ago

10.1186/1472-6807-13-6

Structural and functional studies of S-adenosyl-L-methionine binding proteins: a ligand-centric approach
Cited by: 37
Author(s): Rajaram Gana, Shruti Rao, Hongzhan Huang, Cathy H. Wu, Sona Vasudevan
Software Mentions: 2
Published: over 13 years ago

10.18632/aging.103775

Coupled immune stratification and identification of therapeutic candidates in patients with lung adenocarcinoma
Cited by: 9
Author(s): Wenquan Hu, Guosheng Wang, Yundi Chen, Lonny Yarmus, Biao Liu, Yuan Wan
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms18071336

Quinolin-6-Yloxyacetamides Are Microtubule Destabilizing Agents That Bind to the Colchicine Site of Tubulin
Cited by: 9
Author(s): Ashwani Sharma, Gonzalo Sáez-Calvo, Natacha Olieric, Francisco de Asís Balaguer, Isabel Barasoaín, Clemens Lamberth, J. Fernando Díaz, Michel O. Steinmetz
Software Mentions: 2
Published: over 9 years ago

10.3389/fbioe.2020.00873

Comparative Characterization of Aspergillus Pectin Lyases by Discriminative Substrate Degradation Profiling
Cited by: 14
Author(s): Birgitte Zeuner, Thore Bach Thomsen, Mary A. Stringer, Kristian B. R. M. Krogh, Anne S. Meyer, Jesper Holck
Software Mentions: 2
Published: about 6 years ago

10.3390/ijms19092772

Insight into the Self-Assembling Properties of Peptergents: A Molecular Dynamics Simulation Study
Cited by: 3
Author(s): Jean-Marc Crowet, Mehmet Nail Nasir, Nicolas Dony, Antoine Deschamps, Vincent Stroobant, Pierre Morsomme, Magali Deleu, Patrice Soumillion, Laurence Lins
Software Mentions: 2
Published: about 8 years ago

10.3389/fcell.2021.690461

Phosphoinositide Recognition Sites Are Blocked by Metabolite Attachment
Cited by: 5
Author(s): Troy A. Kervin, Brittany Wiseman, Michael Overduin
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms19113579

Novel Findings of Anti-Filarial Drug Target and Structure-Based Virtual Screening for Drug Discovery
Cited by: 7
Author(s): Tae Woo Choi, Jeong Hoon Cho, Joohong Ahnn, Hyun Ok Song
Software Mentions: 2
Published: almost 8 years ago

10.3389/fnagi.2021.704041

Poly (ADP-ribose) Interacts With Phosphorylated α-Synuclein in Post Mortem PD Samples
Cited by: 13
Author(s): Laura Puentes, Zsofia Lengyel‐Zhand, Ji Youn Lee, Chia-Ju Hsieh, Mark E. Schneider, Kimberly J. Edwards, Kelvin C. Luk, Virginia M.‐Y. Lee, John Q. Trojanowski, Robert H. Mach
Software Mentions: 2
Published: over 5 years ago

10.1107/S205979831801519X

Iron–sulfur clusters have no right angles
Cited by: 15
Author(s): Nigel W. Moriarty, Paul D. Adams
Software Mentions: 2
Published: almost 8 years ago

10.1002/2211-5463.12595

Molecular structure of a 5,10‐methylenetetrahydrofolate dehydrogenase from the silkworm <i>Bombyx mori</i>
Cited by: 4
Author(s): Mohammad Rashedul Haque, Akifumi Higashiura, Atsushi Nakagawa, Aiko Hirowatari, Shigeki Furuya, Kohji Yamamoto
Software Mentions: 2
Published: over 7 years ago

10.1007/s00253-019-09760-9

Interaction of carbohydrate-binding modules with poly(ethylene terephthalate)
Cited by: 33
Author(s): Jeannette Weber, Dušan Petrović, Birgit Strodel, Sander H. J. Smits, Stephan Kolkenbrock, Christian Leggewie, Karl‐Erich Jaeger
Software Mentions: 2
Published: over 7 years ago

10.3389/fbioe.2015.00082

Conserved Functional Motifs and Homology Modeling to Predict Hidden Moonlighting Functional Sites
Cited by: 51
Author(s): Aloysius Wong, Chris Gehring, Helen Ruth Irving
Software Mentions: 2
Published: over 11 years ago

10.1186/1472-6807-7-38

Crystal structure of Saccharomyces cerevisiae 6-phosphogluconate dehydrogenase Gnd1
Cited by: 32
Author(s): Weiwei He, Yi Wang, Wei Liu, Cong‐Zhao Zhou
Software Mentions: 2
Published: over 19 years ago

10.1002/1873-3468.13667

Crystal structure of the catalytic D2 domain of the AAA+ ATPase p97 reveals a putative helical split‐washer‐type mechanism for substrate unfolding
Cited by: 5
Author(s): Lasse Stach, Rhodri M. L. Morgan, Linda Makhlouf, A. Douangamath, F. von Delft, Xiaodong Zhang, Paul S. Freemont
Software Mentions: 2
Published: almost 7 years ago

10.1002/2211-5463.12931

High‐resolution crystal structures of the botulinum neurotoxin binding domains from subtypes A5 and A6
Cited by: 4
Author(s): Jonathan Davies, Amy Britton, Sai Man Liu, K. Ravi Acharya
Software Mentions: 2
Published: about 6 years ago

10.12688/f1000research.13612.2

Crystal structures of a llama VHH antibody BCD090-M2 targeting human ErbB3 receptor
Cited by: 7
Author(s): Igor E. Eliseev, Anna Yudenko, Vera Vysochinskaya, Anna Svirina, Anna V. Evstratyeva, Maria S. Drozhzhachih, Elena A. Krendeleva, Anna Vladimirova, T.A. Nemankin, Viktoria M. Ekimova, А. Б. Улитин, Maria I. Lomovskaya, Pavel Yakovlev, Anton Bukatin, Nickolay A. Knyazev, Fedor Moiseenko, Oleg B. Chakchir
Software Mentions: 2
Published: over 8 years ago

10.12688/f1000research.27676.2

In silico prediction of structure and function for a large family of transmembrane proteins that includes human Tmem41b
Cited by: 6
Author(s): Shahram Mesdaghi, David Murphy, Filomeno Sánchez Rodríguez, José Javier Burgos-Mármol, Daniel J. Rigden
Software Mentions: 2
Published: over 5 years ago

10.1107/S090744491302252X

Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2
Cited by: 53
Author(s): Naoki Horikoshi, Koichi Sato, Keisuke Shimada, Yasuhiro Arimura, Akihisa Osakabe, Hiroaki Tachiwana, Yoko Hayashi‐Takanaka, W. Iwasaki, Wataru Kagawa, Masahiko Harata, Hiroshi Kimurâ, Hitoshi Kurumizaka
Software Mentions: 2
Published: almost 13 years ago

10.3390/ijms20225713

Antimicrobial Peptides as Anti-Infective Agents in Pre-Post-Antibiotic Era?
Cited by: 80
Author(s): Tomislav Rončević, Jasna Puizina, Alessandro Tossi
Software Mentions: 2
Published: almost 7 years ago

10.1107/S1399004714018732

Structural basis for the recognition of muramyltripeptide by<i>Helicobacter pylori</i>Csd4, a<scp>D</scp>,<scp>L</scp>-carboxypeptidase controlling the helical cell shape
Cited by: 19
Author(s): Hyoun Sook Kim, Jieun Kim, Ha Na Im, Doo Ri An, Mijoon Lee, Dušan Hesek, Shahriar Mobashery, Jin Young Kim, Kun Cho, Hye Jin Yoon, Byung Woo Han, Byung Il Lee, Se Won Suh
Software Mentions: 2
Published: almost 12 years ago

10.3390/ijms20246279

Structural Insights into the Intracellular Region of the Human Magnesium Transport Mediator CNNM4
Cited by: 13
Author(s): Paula Giménez-Mascarell, Iker Oyenarte, Irene González‐Recio, Carmen Fernández‐Rodríguez, María Ángeles Corral-Rodríguez, Igone Campos-Zarraga, Jorge Simón, Elie Kostantin, Serge Hardy, Antonio Díaz-Quintana, Mara Zubillaga Lizeaga, Nekane Merino, Tammo Diercks, Francisco J. Blanco, Irene Dίaz–Moreno, María Luz Martínez‐Chantar, Michel L. Tremblay, Dominik Müller, Dritan Siliqi, Luis Alfonso Martínez-Cruz
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms21051788

Altered Cofactor Preference of Thermostable StDAPDH by a Single Mutation at K159
Cited by: 2
Author(s): Xuemin Gao, Qinyuan Ma, Huihui Song, Xiaolun Sun, Zhi-Yun Li, Mingfei Liu
Software Mentions: 2
Published: over 6 years ago

10.1155/2012/721869

Crystal Structure of a 9-Subunit Archaeal Exosome in Pre-Catalytic States of the Phosphorolytic Reaction
Cited by: 19
Author(s): Esben Lorentzen, Elena Conti
Software Mentions: 2
Published: almost 15 years ago

10.1107/S2059798320008049

Fragment-based determination of a proteinase K structure from MicroED data using <i>ARCIMBOLDO_SHREDDER</i>
Cited by: 12
Author(s): Logan S. Richards, Claudia Millán, Jennifer Miao, Michael W. Martynowycz, M.R. Sawaya, Tamir Gonen, Rafael J. Borges, Isabel Usón, José A. Rodríguez
Software Mentions: 2
Published: about 6 years ago

10.12688/f1000research.12012.2

The long reads ahead: de novo genome assembly using the MinION
Cited by: 39
Author(s): Carlos de Lannoy, Dick de Ridder, Judith Risse
Software Mentions: 2
Published: almost 9 years ago

10.1107/S0907444912039042

Structure of the catalytic domain of the<i>Salmonella</i>virulence factor SseI
Cited by: 16
Author(s): Shyam S. Bhaskaran, C. Erec Stebbins
Software Mentions: 2
Published: almost 14 years ago

10.3390/ijms21082857

A Computational Probe into the Structure and Dynamics of the Full-Length Toll-Like Receptor 3 in a Phospholipid Bilayer
Cited by: 8
Author(s): Mahesh Chandra Patra, Maria Batool, Muhammad Haseeb, Sangdun Choi
Software Mentions: 2
Published: over 6 years ago

10.1111/eva.13134

Comparative genomics highlights the importance of drug efflux transporters during evolution of mycoparasitism in <i>Clonostachys</i> subgenus <i>Bionectria</i> (Fungi, Ascomycota, Hypocreales)
Cited by: 15
Author(s): Martin Broberg, Mukesh Dubey, Mudassir Iqbal, Mikael Gudmundssson, Katarina Ihrmark, Hans-Josef Schroers, Dan Funck Jensen, Mikael Brandström Durling, Magnus Karlsson
Software Mentions: 2
Published: about 6 years ago

10.1107/S2059798317013043

Conformational dynamics of the essential sensor histidine kinase WalK
Cited by: 26
Author(s): Yongfei Cai, Mingyang Su, Ashfaq Ahmad, Xiaojie Hu, Jiayan Sang, Ling-Yuan Kong, Xingqiang Chen, Chen Wang, Jianwei Shuai, Aidong Han
Software Mentions: 2
Published: about 9 years ago

10.1155/2021/8548380

Idebenone-Activating Autophagic Degradation of α-Synuclein via Inhibition of AKT-mTOR Pathway in a SH-SY5Y-A53T Model of Parkinson’s Disease: A Network Pharmacological Approach
Cited by: 7
Author(s): Pei Kun He, Yu Gao, Feng‐Juan Lyu, Jia Ning Chen, Yu Hu Zhang, Kun Nie, Qing Xi Zhang, Rui Huang, Qingling Duan, Man Guo, Zhi Hua Liu, He Huang, Gui Xian, Li Juan Wang
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21155277

Biophysical Characterization of Cancer-Related Carbonic Anhydrase IX
Cited by: 4
Author(s): Katarina Koruza, Akilah B. Murray, Brian P. Mahon, Jesse B. Hopkins, Wolfgang Knecht, Robert McKenna, S.Z. Fisher
Software Mentions: 2
Published: about 6 years ago

10.1186/1471-2091-12-12

The Peroxisomal Targeting Signal 1 in sterol carrier protein 2 is autonomous and essential for receptor recognition
Cited by: 9
Author(s): Chris Williams, Nicole Schueller, Colin A. Thompson, Marlene van den Berg, Simon D. van Haren, Ralf Erdmann, Charles S. Bond, Ben Distel, Wolfgang Schliebs, Matthias Wilmanns, Will A. Stanley
Software Mentions: 2
Published: over 15 years ago

10.1107/S2059798316016910

Strategies for carbohydrate model building, refinement and validation
Cited by: 45
Author(s): Jon Agirre
Software Mentions: 2
Published: over 9 years ago

10.1111/febs.15601

Angiotensin‐converting enzyme open for business: structural insights into the subdomain dynamics
Cited by: 16
Author(s): Gyles E. Cozier, Lizelle Lubbe, Edward D. Sturrock, K. Ravi Acharya
Software Mentions: 2
Published: almost 6 years ago

10.3389/fbioe.2020.568318

Elfin UI: A Graphical Interface for Protein Design With Modular Building Blocks
Cited by: 2
Author(s): Chun-Ting Yeh, Leon Obendorf, Fabio Parmeggiani
Software Mentions: 2
Published: almost 6 years ago

10.1107/S1399004715001674

The architecture of amyloid-like peptide fibrils revealed by X-ray scattering, diffraction and electron microscopy
Cited by: 47
Author(s): Annette Eva Langkilde, Kyle L. Morris, Louise C. Serpell, Dmitri I. Svergun, Bente Vestergaard
Software Mentions: 2
Published: over 11 years ago

10.3390/ijms21217843

Structural Insights into the Interactions of Candidal Enolase with Human Vitronectin, Fibronectin and Plasminogen
Cited by: 26
Author(s): Dorota Satała, Grzegorz Satała, Justyna Karkowska‐Kuleta, Michał Bukowski, Anna Kluza, Maria Rapała‐Kozik, Andrzej Kozik
Software Mentions: 2
Published: almost 6 years ago

10.1002/cbic.201900470

Compactness of Protein Folds Alters Disulfide‐Bond Reducibility by Three Orders of Magnitude: A Comprehensive Kinetic Case Study on the Reduction of Differently Sized Tryptophan Cage Model Proteins
Cited by: 3
Author(s): Dániel Horváth, Nóra Taricska, Ernő Keszei, Pál Stráner, Viktor Farkas, Gábor Tóth, András Perczel
Software Mentions: 2
Published: almost 7 years ago

10.1039/c7sc00980a

Characterizing the structural ensemble of γ-secretase using a multiscale molecular dynamics approach
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Author(s): Rodrigo Aguayo‐Ortiz, Cecilia Chávez-García, John E. Straub, Laura Domı́nguez
Software Mentions: 2
Published: almost 10 years ago

10.3390/ijms22010270

Exploring Large Domain Motions in Proteins Using Atomistic Molecular Dynamics with Enhanced Conformational Sampling
Cited by: 10
Author(s): Hisham Dokainish, Yuji Sugita
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22010370

Spontaneous Mutations in HIV-1 Gag, Protease, RT p66 in the First Replication Cycle and How They Appear: Insights from an In Vitro Assay on Mutation Rates and Types
Cited by: 8
Author(s): Joshua Yi Yeo, Darius Wen‐Shuo Koh, Ping Yap, Ghin-Ray Goh, Samuel Ken‐En Gan
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms22041711

Synthesis and Biological Evaluation of Oleanolic Acid Derivatives as Selective Vascular Endothelial Growth Factor Promoter i-Motif Ligands
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Author(s): Huang Zeng, Shuangshuang Kang, Yu Zhang, Ke Liu, Qian Yu, Ding Li, Lin‐Kun An
Software Mentions: 2
Published: over 5 years ago

10.1186/1471-2105-9-554

ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family
Cited by: 9
Author(s): Alberto I. Roca, Albert E. Almada, Aaron Abajian
Software Mentions: 2
Published: almost 18 years ago

10.1002/cbic.202000882

Chemical Biology Tools To Investigate Malaria Parasites
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Author(s): Johannes Broichhagen, Nicole Kilian
Software Mentions: 2
Published: over 5 years ago

10.1002/cmdc.202000237

Structure‐Based Macrocyclization of Substrate Analogue NS2B‐NS3 Protease Inhibitors of Zika, West Nile and Dengue viruses
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Author(s): Niklas J Braun, Jun-Ping Quek, Simon Huber, Jenny Kouretova, Dorothee Rogge, Heike Lang‐Henkel, Ezekiel Ze Ken Cheong, Bing Liang Alvin Chew, A. Heine, Dahai Luo, Torsten Steinmetzer
Software Mentions: 2
Published: over 6 years ago

10.1107/S1399004714026777

In pursuit of an accurate spatial and temporal model of biomolecules at the atomistic level: a perspective on computer simulation
Cited by: 10
Author(s): Alan Gray, Oliver G. Harlen, Sarah A. Harris, Syma Khalid, Yuk Ming Leung, Richard Lonsdale, Adrian J. Mulholland, Arwen R. Pearson, Daniel J. Read, Robin A. Richardson
Software Mentions: 2
Published: almost 12 years ago

10.1107/S2059798318001365

Exploiting distant homologues for phasing through the generation of compact fragments, local fold refinement and partial solution combination
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Author(s): Claudia Millán, Massimo Sammito, Airlie J. McCoy, Andrey Fabricio Ziem Nascimento, Giovanna Petrillo, Robert D. Oeffner, T. Dominguez-Gil, J.A. Hermoso, Randy J. Read, Isabel Usón
Software Mentions: 2
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10.1186/1752-153X-1-7

PocketPicker: analysis of ligand binding-sites with shape descriptors
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Software Mentions: 2
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10.1002/cbic.201300136

The Structure of Glycerol Trinitrate Reductase NerA from<i>Agrobacterium radiobacter</i>Reveals the Molecular Reason for Nitro‐ and Ene‐Reductase Activity in OYE Homologues
Cited by: 10
Author(s): Gustav Oberdorfer, Alexandra Binter, Silvia Wallner, Katharina Durchschein, Mélanie Hall, Kurt Faber, Peter Macheroux, Karl Gruber
Software Mentions: 2
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10.3390/cells9030746

Elevated PDK1 Expression Drives PI3K/AKT/MTOR Signaling Promotes Radiation-Resistant and Dedifferentiated Phenotype of Hepatocellular Carcinoma
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Software Mentions: 2
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10.3390/ijms22115896

Serotonin Promotes Serum Albumin Interaction with the Monomeric Amyloid β Peptide
Cited by: 9
Author(s): Ekaterina A. Litus, Alexei S. Kazakov, Evgenia I. Deryusheva, Ekaterina L. Nemashkalova, Marina P. Shevelyova, Aliya A. Nazipova, Maria E. Permyakova, Elena V Raznikova, Vladimir N. Uversky, Sergei E. Permyakov
Software Mentions: 2
Published: over 5 years ago

10.3390/cells8101146

Tubulin-Dependent Transport of Connexin-36 Potentiates the Size and Strength of Electrical Synapses
Cited by: 12
Author(s): Cherie Alicia Brown, Cristiane del Corsso, Christiane Zoidl, Logan W. Donaldson, David C. Spray, Georg Zoidl
Software Mentions: 2
Published: about 7 years ago

10.1186/1471-2105-12-207

HemeBIND: a novel method for heme binding residue prediction by combining structural and sequence information
Cited by: 39
Author(s): Rong Liu, Jianjun Hu
Software Mentions: 2
Published: over 15 years ago

10.1002/cctc.202100110

A Structural View on the Stereospecificity of Plant Borneol‐Type Dehydrogenases
Cited by: 10
Author(s): Andrea M Chánique, Nicole Dimos, Ivana Drienovská, Elia Calderini, Mónica P. Pantín, Carl P. O. Helmer, Michaël Hofer, Volker Sieber, Loreto P. Parra, Bernhard Loll, Robert Kourist
Software Mentions: 2
Published: over 5 years ago

10.1098/rsob.200218

Vulpeculin: a novel and abundant lipocalin in the urine of the common brushtail possum, <i>Trichosurus vulpecula</i>
Cited by: 2
Author(s): Grace M. Loxley, David O. Hooks, Aristotelis Antonopoulos, Anne Dell, Stuart M. Haslam, Wayne L. Linklater, Jane L. Hurst, Robert J. Beynon
Software Mentions: 2
Published: about 6 years ago

10.1016/j.jsb.2014.03.019

A structural analysis of the AAA+ domains in Saccharomyces cerevisiae cytoplasmic dynein
Cited by: 20
Author(s): Emma S Gleave, Helgo Schmidt, Andrew P. Carter
Software Mentions: 2
Published: over 12 years ago

10.1016/j.jsb.2016.01.016

Easy mammalian expression and crystallography of maltose-binding protein-fused human proteins
Cited by: 31
Author(s): Marcel Bokhove, Hamed Sadat Al Hosseini, Takako Saitô, Elisa Dioguardi, Katharina Gegenschatz‐Schmid, Kaoru Nishimura, Isha Raj, Daniele de Sanctis, Ling Han, Luca Jovine
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-15-319

Modeling T cell receptor recognition of CD1-lipid and MR1-metabolite complexes
Cited by: 6
Author(s): Brian G. Pierce, Thom Vreven, Zhiping Weng
Software Mentions: 2
Published: about 12 years ago

10.1016/j.yjsbx.2020.100024

Cryo-electron microscopic and X-ray crystallographic analysis of the light-driven proton pump proteorhodopsin reveals a pentameric assembly
Cited by: 4
Author(s): Stephan Hirschi, David Kalbermatter, Zöhre Ucurum, Dimitrios Fotiadis
Software Mentions: 2
Published: almost 7 years ago

10.3390/cells10020374

Functional and Structural Characterization of ClC-1 and Nav1.4 Channels Resulting from CLCN1 and SCN4A Mutations Identified Alone and Coexisting in Myotonic Patients
Cited by: 2
Author(s): Oscar Brenes, Raffaella Barbieri, Melissa Vásquez, Rebeca Vindas-Smith, Jeffrey Roig, Adarli Romero, Gerardo Del Valle, Luis Bermúdez-Guzmán, Sara Bertelli, Michael Pusch, Fernando Morales Montero
Software Mentions: 2
Published: over 5 years ago

10.1107/S2059798318006356

Crystal structure of the spliceosomal DEAH-box ATPase Prp2
Cited by: 21
Author(s): Andreas Schmitt, Florian Hamann, Piotr Neumann, Ralf Ficner
Software Mentions: 2
Published: over 8 years ago

10.1186/1472-6807-7-45

Crystal structure of vaccinia virus uracil-DNA glycosylase reveals dimeric assembly
Cited by: 35
Author(s): Norbert Schormann, Alexei Grigorian, Alexandra B. Samal, Krishnan Raman, Lawrence J. DeLucas, Debasish Chattopadhyay
Software Mentions: 2
Published: over 19 years ago

10.3390/cells9040911

Targeted PARP Inhibition Combined with FGFR1 Blockade is Synthetically Lethal to Malignant Cells in Patients with Pancreatic Cancer
Cited by: 6
Author(s): Shiue‐Wei Lai, Oluwaseun Adebayo Bamodu, Jia Hong Chen, Alexander T.H. Wu, Wei Hwa Lee, Tsu Yi Chao, Chi Tai Yeh
Software Mentions: 2
Published: over 6 years ago

10.3390/cells10051205

Regulation of the Phosphoinositide Code by Phosphorylation of Membrane Readers
Cited by: 6
Author(s): Troy A. Kervin, Michael Overduin
Software Mentions: 2
Published: over 5 years ago

10.1002/cmdc.201000467

Thiazolidinedione‐Based PI3Kα Inhibitors: An Analysis of Biochemical and Virtual Screening Methods
Cited by: 15
Author(s): Jo‐Anne Pinson, Oleg Schmidt‐Kittler, Jianhua Zhu, Ian G. Jennings, Kenneth W. Kinzler, Bert Vogelstein, David K. Chalmers, Phillip E. Thompson
Software Mentions: 2
Published: almost 16 years ago

10.3389/fbioe.2020.00073

Push It to the Limit: Identification of Novel Amino Acid Changes on the Acetolactate Synthase Enzyme of Rice That Putatively Confer High Level of Tolerance to Different Imidazolinones
Cited by: 1
Author(s): Giseli Buffon, Thainá Inês Lamb, Mara Cristina Barbosa Lopes, Raul Antônio Sperotto, Luís Fernando Saraiva Macedo Timmers
Software Mentions: 2
Published: over 6 years ago

10.1016/j.celrep.2016.06.022

Structural Insights into Arl1-Mediated Targeting of the Arf-GEF BIG1 to the trans-Golgi
Cited by: 25
Author(s): Antonio Galindo, Nicolas Soler, Stephen H. McLaughlin, Myeong-Hee Yu, Roger L. Williams, Sean Munro
Software Mentions: 2
Published: over 10 years ago

10.1107/S2059798320000212

3D domain swapping in the TIM barrel of the α subunit of<i>Streptococcus pneumoniae</i>tryptophan synthase
Cited by: 3
Author(s): K. Michalska, Marcin Kowiel, L. Bigelow, M. Endres, Mirosław Gilski, Mariusz Jaskólski, A. Joachimiak
Software Mentions: 2
Published: over 6 years ago

10.1016/j.celrep.2019.01.073

Control of Bacterial Virulence through the Peptide Signature of the Habitat
Cited by: 39
Author(s): Emilia Krypotou, Mariela Scortti, C. Grundström, Melanie Oelker, Ben F. Luisi, A. Elisabeth Sauer‐Eriksson, José A. Vázquez‐Boland
Software Mentions: 2
Published: over 7 years ago

10.1007/s00018-019-03150-0

The PCNA interaction motifs revisited: thinking outside the PIP-box
Cited by: 69
Author(s): Andreas Prestel, Nanna Wichmann, João M. Martins, Riccardo Marabini, Noah Kassem, Sebastian S. Broendum, Marit Otterlei, Olaf Nielsen, Martin Willemoës, Michael Ploug, Wouter Boomsma
Software Mentions: 2
Published: over 7 years ago

10.1016/j.chom.2020.06.010

Neutralization of SARS-CoV-2 by Destruction of the Prefusion Spike
Cited by: 280
Author(s): Jiandong Huo, Yuguang Zhao, Jingshan Ren, Daming Zhou, Duyvesteyn Hme., H. Ginn, L. Carrique, Tomas Malinauskas, R.R. Ruza, Pranav N.M. Shah, Tiong Kit Tan, Pramila Rijal, Naomi Coombes, Kevin R. Bewley, Julia A. Tree, Julika Radecke, Neil G. Paterson, Piyasa Supasa, Juthathip Mongkolsapaya, Gavin Screaton, Miles W. Carroll, Alain Townsend, Elizabeth E. Fry, Raymond J. Owens, D.I. Stuart
Software Mentions: 2
Published: about 6 years ago

10.1016/j.celrep.2021.109292

Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B.1.1.7
Cited by: 343
Author(s): Bo Meng, Steven A Kemp, Guido Papa, Rawlings P. Datir, Isabella Ferreira, Sara Marelli, William T. Harvey, Spyros Lytras, Ahmed A. Mohamed, Giulia Gallo, Nazia Thakur, Dami Collier, Petra Mlčochová, Lidia M. Duncan, Alessandro M. Carabelli, Julia C. Kenyon, Andrew M. L. Lever, Anna De Marco, Christian Saliba, Katja Culap, Elisabetta Cameroni, Nicholas J Matheson, Luca Piccoli, Davide Corti, Leo C. James, David L. Robertson, Dalan Bailey, Ravindra Gupta
Software Mentions: 2
Published: over 5 years ago

10.1016/j.celrep.2019.11.025

On-Site Ribosome Remodeling by Locally Synthesized Ribosomal Proteins in Axons
Cited by: 95
Author(s): Toshiaki Shigeoka, Max Koppers, Hovy Ho-Wai Wong, Julie Qiaojin Lin, Roberta Cagnetta, Asha Dwivedy, Janaína de Freitas Nascimento, Francesca W. van Tartwijk, Florian Ströhl, Jean-Michel Cioni, Julia Schaeffer, Mark Carrington, Clemens F. Kaminski, Hosung Jung, William A. Harris, Christine E. Holt
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0248394

Anti-asthmatic effect of nitric oxide metallo-donor FOR811A [cis-[Ru(bpy)2(2-MIM)(NO)](PF6)3] in the respiratory mechanics of Swiss mice
Cited by: 6
Author(s): Paula Priscila Correia Costa, Stefanie Bressan Waller, Gilvan Ribeiro dos Santos, Fladimir de Lima Gondim, Daniel Silveira Serra, Francisco Sales Ávila Cavalcante, Florêncio Sousa Gouveia Júnior, Valdir Ferreira de Paula Júnior, Eduardo Henrique Silva Sousa, Luiz Gonzaga de França Lopes, Wesley Lyeverton Correia Ribeiro, Helena Serra Azul Monteiro
Software Mentions: 2
Published: over 5 years ago

10.1186/s12900-016-0064-6

Conservation of the C-type lectin fold for accommodating massive sequence variation in archaeal diversity-generating retroelements
Cited by: 15
Author(s): Sumit Handa, Blair G. Paul, Jeffery F. Miller, David L. Valentine, Partho Ghosh
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0115409

Characterization of M. tuberculosis SerB2, an Essential HAD-Family Phosphatase, Reveals Novel Properties
Cited by: 12
Author(s): Gaya P. Yadav, Sonal Shree, Ruchi Maurya, Niyati Rai, Diwakar Singh, Kirti Srivastava, Ravishankar Ramachandran
Software Mentions: 2
Published: almost 12 years ago