10.3390/pharmaceutics12090879

Uncovering New Drug Properties in Target-Based Drug–Drug Similarity Networks
Cited by: 14
Author(s): Lucreţia Udrescu, Paul Bogdan, Aimée Rodica Chiş, Ioan Ovidiu Sîrbu, Alexandru Topîrceanu, Renata-Maria Văruţ, Mihai Udrescu
Software Mentions: 1
Published: about 5 years ago

10.3390/pharmaceutics13091360

Anticancer and Structure Activity Relationship of Non-Symmetrical Choline Kinase Inhibitors
Cited by: 3
Author(s): Santiago Schiaffino-Ortega, Elena Mariotto, Pilar María Luque-Navarro, María Kimatrai-Salvador, Pablo Ríos-Marco, R. Hurtado‐Guerrero, Carmen Marco, María P. Carrasco-Jiménez, Giampietro Viola, Carlota Lopez Cara
Software Mentions: 1
Published: about 4 years ago

10.3390/pharmaceutics13010006

Hybrid Inhibitors of DNA Gyrase A and B: Design, Synthesis and Evaluation
Cited by: 8
Author(s): Martina Durcik, Žiga Skok, Janez Ilaš, Nace Zidar, Anamarija Zega, Petra Szili, Gábor Draskovits, Tamás Révész, D. Kikelj, Ákos Nyerges, Csaba Pál, Lucija Peterlin Mašič, Tihomir Tomašić
Software Mentions: 1
Published: almost 5 years ago

10.3390/pharmaceutics13091350

Zoledronic Acid as a Novel Dual Blocker of KIR6.1/2-SUR2 Subunits of ATP-Sensitive K+ Channels: Role in the Adverse Drug Reactions
Cited by: 9
Author(s): Fatima Maqoud, Rosa Scala, Vincenzo Tragni, Ciro Leonardo Pierri, Maria Grazia Perrone, Antonio Scilimati, Domenico Tricarico
Software Mentions: 1
Published: about 4 years ago

10.3390/pharmaceutics12020122

Biological Evaluation of Naproxen–Dehydrodipeptide Conjugates with Self-Hydrogelation Capacity as Dual LOX/COX Inhibitors
Cited by: 16
Author(s): Rute Moreira, P. J. Jervis, André Carvalho, Paula M. T. Ferreira, José A. Martins, Patrı́cia Valentão, Paula B. Andrade
Software Mentions: 1
Published: almost 6 years ago

10.3390/pharmaceutics13040578

In Silico Selection and Evaluation of Pugnins with Antibacterial and Anticancer Activity Using Skin Transcriptome of Treefrog (Boana pugnax)
Cited by: 3
Author(s): Yamil Liscano, Laura M Palma Medina, José Oñate-Garzón, Fanny Guzmán, Mónica Pickholz, Jean Paul Delgado
Software Mentions: 1
Published: over 4 years ago

10.3390/pharmaceutics13070966

Structure–Activity Relationship and Molecular Docking of a Kunitz-Like Trypsin Inhibitor, Kunitzin-AH, from the Skin Secretion of Amolops hainanensis
Cited by: 3
Author(s): Yuqing Chen, Xinping Xi, Chengbang Ma, Mei Zhou, Xiaoling Chen, Zhuming Ye, Lilin Ge, Qinan Wu, Lei Wang, Hang Fai Kwok
Software Mentions: 1
Published: over 4 years ago

10.3390/pharmaceutics12121155

Bacterial Cellulose Containing Combinations of Antimicrobial Peptides with Various QQ Enzymes as a Prototype of an “Enhanced Antibacterial” Dressing: In Silico and In Vitro Data
Cited by: 15
Author(s): Aysel Aslanli, Ilya Lyagin, Nikolay Stepanov, D. E. Presnov
Software Mentions: 1
Published: almost 5 years ago

10.1002/prp2.197

Molecular modeling of antibodies for the treatment of <scp>TNF</scp> <i>α</i> ‐related immunological diseases
Cited by: 23
Author(s): Ciro Leonardo Pierri, Fabrizio Bossis, Giuseppe Punzi, Anna Grassi, Michela Cetrone, G. Parisi, Domenico Tricarico
Software Mentions: 1
Published: almost 10 years ago

10.1080/13880209.2021.1979051

Pharmacokinetic study of Tangwang Mingmu granule for the management of diabetic retinopathy based on network pharmacology
Cited by: 5
Author(s): Yucheng Wang, Beibei Xue, Xiaoli Wang, Qilong Wang, Erwei Liu, Xiaopeng Chen
Software Mentions: 1
Published: almost 5 years ago

10.1007/s11095-017-2229-9

Optimizing the Bioavailability of Subcutaneously Administered Biotherapeutics Through Mechanochemical Drivers
Cited by: 34
Author(s): D. M. Collins, Lampros Kourtis, Nagarajan R. Thyagarajapuram, Rhea Sirkar, Shiven Kapur, Michael W. Harrison, David J. Bryan, Graham B. Jones, Justin M. Wright
Software Mentions: 1
Published: over 8 years ago

10.1098/rstb.2014.0244

Quantifying evolutionary constraints on B-cell affinity maturation
Cited by: 45
Author(s): Connor O. McCoy, Trevor Bedford, Vladimir N. Minin, Philip Bradley, Harlan Robins, F. A. Matsen
Software Mentions: 1
Published: about 10 years ago

10.1098/rstb.2012.0015

Design principles underpinning the regulatory diversity of protein kinases
Cited by: 30
Author(s): Krishnadev Oruganty, Natarajan Kannan
Software Mentions: 1
Published: about 13 years ago

10.1007/s11120-015-0198-6

Crystal structure and biochemical characterization of Chlamydomonas FDX2 reveal two residues that, when mutated, partially confer FDX2 the redox potential and catalytic properties of FDX1
Cited by: 20
Author(s): Marko Boehm, Markus Alahuhta, David W. Mulder, Erin A. Peden, Hai Long, Roman Brunecky, В.В. Лунин, Paul W. King, Maria L. Ghirardi, Alexandra Dubini
Software Mentions: 1
Published: about 10 years ago

10.1007/s11120-017-0443-2

An improved crystal structure of C-phycoerythrin from the marine cyanobacterium Phormidium sp. A09DM
Cited by: 14
Author(s): Ravi R. Sonani, A.W. Roszak, Claire Ortmann de Percin Northumberland, Datta Madamwar, Richard J. Cogdell
Software Mentions: 1
Published: about 8 years ago

10.14814/phy2.13715

Clinical, biochemical, and pathophysiological analysis of <i>SLC34A1</i> mutations
Cited by: 30
Author(s): Amy Fearn, Benjamin Allison, S.J. Rice, Noel Edwards, Jan Halbritter, Soline Bourgeois, Eva M. Pastor-Arroyo, Friedhelm Hildebrandt, Velibor Tasić, Carsten A. Wagner, Nati Hernando, John A. Sayer, Andreas Werner
Software Mentions: 1
Published: over 7 years ago

10.1002/phy2.160

Identification of compound heterozygous <i>KCNJ1</i> mutations (encoding ROMK) in a kindred with Bartter's syndrome and a functional analysis of their pathogenicity
Cited by: 11
Author(s): Shalabh Srivastava, Dimin Li, Noel Edwards, Ann Marie Hynes, Katrina Wood, Mohamed H. Al‐Hamed, A. Caroline Wroe, David Reaich, Shabbir H. Moochhala, Paul A. Welling, John A. Sayer
Software Mentions: 1
Published: about 12 years ago

10.1111/plb.12920

The green microalga <i>Lobosphaera incisa</i> harbours an arachidonate 15<i>S</i>‐lipoxygenase
Cited by: 9
Author(s): Benjamin Djian, Ellen Hornung, Till Ischebeck, Ivo Feußner
Software Mentions: 1
Published: about 7 years ago

10.1111/pbi.12914

The rice terpene synthase gene<i>OsTPS19</i>functions as an (<i>S</i>)-limonene synthase<i>in planta,</i>and its overexpression leads to enhanced resistance to the blast fungus<i>Magnaporthe oryzae</i>
Cited by: 69
Author(s): Xujun Chen, Hao Chen, Joshua S. Yuan, Tobias G. Köllner, Yuying Chen, Yufen Guo, Xiaoxi Zhuang, Xinlu Chen, Yongjun Zhang, Jianyu Fu, Andreas Nebenführ, Zejian Guo, Feng Chen
Software Mentions: 1
Published: over 7 years ago

10.1186/s13007-019-0441-9

Transcriptome analysis of Polygonatum cyrtonema Hua: identification of genes involved in polysaccharide biosynthesis
Cited by: 22
Author(s): Chenkai Wang, Daiyin Peng, Jiaquan Zhu, Derui Zhao, Yuanyuan Shi, Shengxiang Zhang, Kelong Ma, Jiawen Wu, Lusheng Huang
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9091171

Iron-Sulfur Cluster Complex Assembly in the Mitochondria of Arabidopsis thaliana
Cited by: 7
Author(s): Alejandro M. Armas, Manuel Balparda, Agustina Terenzi, María V. Busi, María A. Pagani, Diego F. Gómez-Casati
Software Mentions: 1
Published: about 5 years ago

10.3390/plants10061231

A Natural Botanical Product, Resveratrol, Effectively Suppresses Vesicular Stomatitis Virus Infection In Vitro
Cited by: 2
Author(s): Shih‐Chao Lin, Xiang Zhang, Caitlin W. Lehman, Han-Chi Pan, Ya Wen, Shiow‐Yi Chen
Software Mentions: 1
Published: over 4 years ago

10.3390/plants8070225

Control of Organ Abscission and Other Cell Separation Processes by Evolutionary Conserved Peptide Signaling
Cited by: 21
Author(s): Chun‐Lin Shi, Renate M. Alling, Marta Hammerstad, Reidunn B. Aalen
Software Mentions: 1
Published: over 6 years ago

10.3390/plants9050569

Putative Silicon Transporters and Effect of Temperature Stresses and Silicon Supplementation on Their Expressions and Tissue Silicon Content in Poinsettia
Cited by: 8
Author(s): Jiangtao Hu, Yali Li, Byoung Ryong Jeong
Software Mentions: 1
Published: over 5 years ago

10.3390/plants9030315

Characterization of Trehalose-6-phosphate Synthase and Trehalose-6-phosphate Phosphatase Genes and Analysis of its Differential Expression in Maize (Zea mays) Seedlings under Drought Stress
Cited by: 15
Author(s): Phamela Acosta-Pérez, Bianka Dianey Camacho-Zamora, Edward Alexander Espinoza-Sánchez, Guadalupe Gutiérrez‐Soto, Francisco Zavala‐García, María Jazmín Abraham-Juárez, Sugey Ramona Sinagawa-García
Software Mentions: 1
Published: over 5 years ago

10.3390/plants7010006

Deciphering the Evolution and Development of the Cuticle by Studying Lipid Transfer Proteins in Mosses and Liverworts
Cited by: 19
Author(s): Tiina A. Salminen, D. Magnus Eklund, Valentin Joly, Kristina Blomqvist, Daniel P. Matton, Johan Edqvist
Software Mentions: 1
Published: almost 8 years ago

10.3390/plants9091166

The Active Compounds and Therapeutic Mechanisms of Pentaherbs Formula for Oral and Topical Treatment of Atopic Dermatitis Based on Network Pharmacology
Cited by: 13
Author(s): Man Chu, Miranda Sin-Man Tsang, Rong He, Christopher Wai‐Kei Lam, Zhi Bo Quan, Chun Kwok Wong
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pbio.2000127

Decoding the Interactions Regulating the Active State Mechanics of Eukaryotic Protein Kinases
Cited by: 24
Author(s): Hiruy S. Meharena, Xue‐Gong Fan, Lalima G. Ahuja, Malik M. Keshwani, Christopher L. McClendon, Angela M. Chen, Joseph A. Adams, Susan S. Taylor
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pbio.0030375

Different Catalytic Mechanisms in Mammalian Selenocysteine- and Cysteine-Containing Methionine-R-Sulfoxide Reductases
Cited by: 166
Author(s): Hwa-Young Kim, Vadim N. Gladyshev
Software Mentions: 1
Published: about 20 years ago

10.1371/journal.pbio.0040148

Crystal Structure of the HSV-1 Fc Receptor Bound to Fc Reveals a Mechanism for Antibody Bipolar Bridging
Cited by: 77
Author(s): Elizabeth R. Sprague, Chu Wang, David Baker, Pamela J. Björkman
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pbio.1000126

ATP and MO25α Regulate the Conformational State of the STRADα Pseudokinase and Activation of the LKB1 Tumour Suppressor
Cited by: 127
Author(s): Elton Zeqiraj, B Filippi, Simon Goldie, Iva Navrátilová, Jérôme Boudeau, Mária Deák, Dario R. Alessi, Daan M. F. van Aalten
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pbio.2005924

Preservation of myocardial contractility during acute hypoxia with OMX-CV, a novel oxygen delivery biotherapeutic.
Cited by: 13
Author(s): Jason Boehme, Natacha Le Moan, Rebecca Johnson Kameny, Alexandra Loucks, Michael J. Johengen, Amy Lesneski, Wei Gong, Brian D. Goudy, Tina Davis, Kevin Tanaka, April Davis, Yinghe He, Janel Long‐Boyle, Vijay Ivaturi, Jogarao Gobburu, Jonathan A. Winger, Stephen Cary, Sanjeev A. Datar, Jeffrey R. Fineman, Ana Krtolica, Emin Maltepe
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pbio.1000120

The Hierarchy of Exon-Junction Complex Assembly by the Spliceosome Explains Key Features of Mammalian Nonsense-Mediated mRNA Decay
Cited by: 115
Author(s): Niels H. Gehring, Styliani Lamprinaki, Matthias W. Hentze, Andreas E. Kulozik
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pbio.1002344

A Novel Platform for the Potentiation of Therapeutic Antibodies Based on Antigen-Dependent Formation of IgG Hexamers at the Cell Surface
Cited by: 141
Author(s): Rob N. de Jong, Frank J. Beurskens, Sandra Verploegen, Kristin Strumane, Muriel D. van Kampen, Marleen Voorhorst, Wendy Horstman, Patrick J. Engelberts, Simone C. Oostindie, Guanbo Wang, Albert J. R. Heck, Janine Schuurman, Paul W.H.I. Parren
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pbio.1001080

Towards a Pharmacophore for Amyloid
Cited by: 182
Author(s): Meytal Landau, M.R. Sawaya, Kym F. Faull, Arthur Laganowsky, Lin Jiang, Stuart A. Sievers, Jie Liu, Jorge R. Barrio, David Eisenberg
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pbio.1000071

The Active Site of a Carbohydrate Esterase Displays Divergent Catalytic and Noncatalytic Binding Functions
Cited by: 59
Author(s): Cédric Montanier, Victoria A. Money, Virgínia M. R. Pires, J.E. Flint, Benedita A. Pinheiro, Arun Goyal, José A. M. Prates, Atsushi Izumi, Henrik Stålbrand, Carl Morland, Alan Cartmell, Katarína Kolenová, Evangelos Topakas, E.J. Dodson, David N. Bolam, G.J. Davies, C.M.G.A. Fontes, Harry J. Gilbert
Software Mentions: 1
Published: over 16 years ago

10.1371/journal.pbio.0050007

Drug Export Pathway of Multidrug Exporter AcrB Revealed by DARPin Inhibitors
Cited by: 264
Author(s): Gaby Sennhauser, Patrick Amstutz, Christophe Briand, Otso Storchenegger, Markus G. Grütter
Software Mentions: 1
Published: almost 19 years ago

10.1371/journal.pbio.3000617

Low mutational load and high mutation rate variation in gut commensal bacteria
Cited by: 56
Author(s): Ricardo S. Ramiro, Paulo Durão, Claudia Bank, Isabel Gordo
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.3000436

Peptide presentation by bat MHC class I provides new insight into the antiviral immunity of bats
Cited by: 24
Author(s): Dan Lü, Kefang Liu, Di Zhang, Yue Cui, Qiong Lu, Hao Cheng, Liang Wang, Yan Chai, Jianxun Qi, Lin‐Fa Wang, George F. Gao, William J. Liu
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pbio.0060050

Insights into Mad2 Regulation in the Spindle Checkpoint Revealed by the Crystal Structure of the Symmetric Mad2 Dimer
Cited by: 87
Author(s): Maojun Yang, Bing Li, Chyong Jy Liu, Diana R. Tomchick, Mischa Machius, Josep Rizo, Hongtao Yu, Xuelian Luo
Software Mentions: 1
Published: over 17 years ago

10.1371/journal.pbio.3001016

The SARS-CoV-2 Spike protein has a broad tropism for mammalian ACE2 proteins
Cited by: 160
Author(s): Carina Conceicao, Nazia Thakur, Stacey Human, James Kelly, Leanne Logan, Dagmara Bialy, Sushant Bhat, Phoebe Stevenson-Leggett, Adrian K. Zagrajek, Philippa Hollinghurst, Michal Varga, Christina Tsirigoti, Matthew Tully, Chris Chiu, Katy Moffat, Adrian Paul Silesian, John A. Hammond, Helena J. Maier, Erica Bickerton, Holly Shelton, Isabelle Dietrich, Stephen C. Graham, Dalan Bailey
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pbio.1000387

Molecular Basis for the Dual Function of Eps8 on Actin Dynamics: Bundling and Capping
Cited by: 90
Author(s): Maud Hertzog, Francesca Milanesi, Larnele Hazelwood, Andrea Disanza, Hongjun Liu, Emilie Perlade, Maria Grazia Malabarba, Sebastiano Pasqualato, Alessio Maiolica, Stefano Confalonieri, Christophe Le Clainche, Nina Offenhäuser, Jennifer Block, Klemens Rottner, Pier Paolo Di Fiore, Marie‐France Carlier, Niels Volkmann, Dorit Hanein, Giorgio Scita
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pbio.2006192

Insight into small molecule binding to the neonatal Fc receptor by X-ray crystallography and 100 kHz magic-angle-spinning NMR
Cited by: 27
Author(s): Daniel Stöppler, Alex Macpherson, Susanne Smith-Penzel, Nicolas Basse, Fabien Lecomte, Hervé Deboves, Richard D. Taylor, Tim Norman, John Porter, Lorna C. Waters, Marta Westwood, Ben Cossins, Katharine Cain, James H. White, Robert Griffin, Christine E. Prosser, Sebastian Kelm, Amy Sullivan, David Fox, Mark D. Carr, Alistair J. Henry, Richard D. Taylor, Beat H. Meier, Hartmut Oschkinat, Alastair D. G. Lawson
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.3000351

A polymorphic helix of a Salmonella needle protein relays signals defining distinct steps in type III secretion
Cited by: 24
Author(s): E.Z. Guo, Daniel C. Desrosiers, Jan Zálešák, James Tolchard, Mélanie Berbon, Birgit Habenstein, Thomas C. Marlovits, Antoine Loquet, Jorge E. Galán
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.0040144

A Src-Like Inactive Conformation in the Abl Tyrosine Kinase Domain
Cited by: 276
Author(s): Nicholas M. Levinson, Olga Kuchment, Kui Shen, Matthew A. Young, Michael A. Koldobskiy, Martin Karplus, Philip A. Cole, John Kuriyan
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pbio.1001193

Evolutionarily Conserved Linkage between Enzyme Fold, Flexibility, and Catalysis
Cited by: 95
Author(s): Arvind Ramanathan, Pratul K. Agarwal
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pbio.3001237

Cryo-electron microscopy structures of the N501Y SARS-CoV-2 spike protein in complex with ACE2 and 2 potent neutralizing antibodies
Cited by: 157
Author(s): Xing Zhu, Dhiraj Mannar, Shanti Swaroop Srivastava, Alison Berezuk, Jean‐Philippe Demers, James W. Saville, Karoline Leopold, Wei Li, Dimiter S. Dimitrov, K.S. Tuttle, Shaoyu Zhou, Sagar Chittori, Sriram Subramaniam
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pbio.1000557

Structure of a Classical MHC Class I Molecule That Binds “Non-Classical” Ligands
Cited by: 41
Author(s): Chee Seng Hee, Song Gao, Bernhard Loll, Marcia M. Miller, Barbara Uchańska-Ziegler, Oliver Daumke, Andreas Ziegler
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pbio.1002509

Structure and Function of the Su(H)-Hairless Repressor Complex, the Major Antagonist of Notch Signaling in Drosophila melanogaster
Cited by: 49
Author(s): Zhenyu Yuan, Praxenthaler Heiko, Nassif Tabaja, Rubben Torella, Anette Preiss, Dieter Maier, Rhett A. Kovall
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.2000784

Statin and rottlerin small-molecule inhibitors restrict colon cancer progression and metastasis via MACC1
Cited by: 61
Author(s): Manisha Juneja, Dennis Kobelt, Wolfgang Walther, Cynthia Voss, Janice Smith, Edgar Specker, Martin Neuenschwander, Björn-Oliver Gohlke, Mathias Dahlmann, Silke Radetzki, Robert Preißner, Jens Peter von Kries, Peter M. Schlag, Ulrike Stein
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pbio.0050121

Structural and Thermodynamic Properties of Selective Ion Binding in a K+ Channel
Cited by: 206
Author(s): Steve W. Lockless, Ming Zhou, Roderick MacKinnon
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pbio.3000175

Constitutively active BRS3 is a genuinely orphan GPCR in placental mammals
Cited by: 15
Author(s): Huihao Tang, Chuanjun Shu, Haidi Chen, Xiaojing Zhang, Zhuqing Zang, Cheng Deng
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.1002365

Interactome Mapping Reveals the Evolutionary History of the Nuclear Pore Complex
Cited by: 86
Author(s): Samson O. Obado, Marc Brillantes, Kunihiro Uryu, Wenzhu Zhang, Natalia E. Ketaren, Brian T. Chait, Mark C. Field, Michael P. Rout
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pbio.3000649

Dynamics in the murine norovirus capsid revealed by high-resolution cryo-EM
Cited by: 18
Author(s): Joseph S. Snowden, Daniel L. Hurdiss, Oluwapelumi O. Adeyemi, Neil A. Ranson, Morgan R. Herod, Nicola J. Stonehouse
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.1000576

Phosphorylation of Mouse Immunity-Related GTPase (IRG) Resistance Proteins Is an Evasion Strategy for Virulent Toxoplasma gondii
Cited by: 224
Author(s): Tobias Steinfeldt, Stephanie Könen‐Waisman, Lan Tong, Nikolaus Pawlowski, Tobias Lamkemeyer, L. David Sibley, Julia P. Hunn, Jonathan C. Howard
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pbio.3000618

Characterization of a membrane binding loop leads to engineering botulinum neurotoxin B with improved therapeutic efficacy
Cited by: 17
Author(s): Linxiang Yin, Geoffrey Masuyer, Sicai Zhang, Jie Zhang, Shin-Ichiro Miyashita, David Burgin, Laura Lovelock, Shu-Fen Coker, Tian‐Min Fu, Pål Stenmark, Min Dong
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.0030309

The Genomics of Disulfide Bonding and Protein Stabilization in Thermophiles
Cited by: 180
Author(s): Morgan Beeby, Brian D. O’Connor, Carsten Ryttersgaard, Daniel R. Boutz, Linda L. Perry, Todd O. Yeates
Software Mentions: 1
Published: about 20 years ago

10.1371/journal.pbio.2005599

Mechanotransduction in talin through the interaction of the R8 domain with DLC1
Cited by: 59
Author(s): Alexander William M. Haining, Rolle Rahikainen, Ernesto Cortés, Dariusz Lachowski, Alistair Rice, Magdaléna von Essen, Vesa P. Hytönen, Armando del Río Hernández
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pbio.1001358

A Toxoplasma gondii Pseudokinase Inhibits Host IRG Resistance Proteins
Cited by: 152
Author(s): Martin Christian Fleckenstein, Michael L. Reese, Stephanie Könen‐Waisman, John C. Boothroyd, Jonathan C. Howard, Tobias Steinfeldt
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pbio.0020002

JAMM: A Metalloprotease-Like Zinc Site in the Proteasome and Signalosome
Cited by: 197
Author(s): Xavier Ambroggio, Douglas C. Rees, Raymond J. Deshaies
Software Mentions: 1
Published: almost 22 years ago

10.1371/journal.pbio.3000085

A novel Ca2+-binding protein that can rapidly transduce auxin responses during root growth
Cited by: 28
Author(s): Ora Hazak, Elad Mamon, Meirav Lavy, Hasana Sternberg, Smrutisanjita Behera, Ina Schmitz-Thom, Daria Bloch, Olga Dementiev, Itay Gutman, Tomer Danziger, Netanel Schwarz, Anas Abuzeineh, Keithanne Mockaitis, Mark Estelle, Joel A. Hirsch, Jörg Kudla, Shaul Yalovsky
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pbio.1001040

A Chaperonin Subunit with Unique Structures Is Essential for Folding of a Specific Substrate
Cited by: 79
Author(s): Lianwei Peng, Yoichiro Fukao, Fumiyoshi Myouga, Reiko Motohashi, Kazuo Shinozaki, Toshiharu Shikanai
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pbio.1001726

TRAF4 Is a Novel Phosphoinositide-Binding Protein Modulating Tight Junctions and Favoring Cell Migration
Cited by: 44
Author(s): Adrien Rousseau, A.G. McEwen, Pierre Poussin-Courmontagne, Didier Rognan, Yves Nominé, Marie–Christine Rio, Catherine Tomasetto, Fabien Alpy
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pbio.0050023

The Crystal Structure of the SV40 T-Antigen Origin Binding Domain in Complex with DNA
Cited by: 54
Author(s): Gretchen Meinke, Paul J. Phelan, Stephanie Moine, Elena Bochkareva, A. Bochkarev, Peter A. Bullock, Andrew Bohm
Software Mentions: 1
Published: almost 19 years ago

10.1371/journal.pbio.3000790

Cryo-EM structure of the human concentrative nucleoside transporter CNT3
Cited by: 12
Author(s): Yanxia Zhou, Lianghuan Liao, Chen Wang, Jialu Li, Pengliang Chi, Qi Xiao, Qingting Liu, Li Guo, Linfeng Sun, Dong Deng
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pbio.0030257

Structure of a Pheromone Receptor-Associated MHC Molecule with an Open and Empty Groove
Cited by: 45
Author(s): Rich Olson, Kathryn E. Huey-Tubman, Catherine Dulac, Pamela J. Björkman
Software Mentions: 1
Published: over 20 years ago

10.1371/journal.pbio.1001432

Structural Mechanism of ER Retrieval of MHC Class I by Cowpox
Cited by: 35
Author(s): William H. McCoy, Xiaoli Wang, Wayne M. Yokoyama, Ted H. Hansen, Daved H. Fremont
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pbio.0040269

The Structural Basis for Promoter −35 Element Recognition by the Group IV σ Factors
Cited by: 110
Author(s): William J. Lane, Seth A. Darst
Software Mentions: 1
Published: over 19 years ago

10.1371/journal.pbio.1001581

A Structural Basis for IκB Kinase 2 Activation Via Oligomerization-Dependent Trans Auto-Phosphorylation
Cited by: 94
Author(s): Smarajit Polley, De-Bin Huang, Arthur V. Hauenstein, Amanda J. Fusco, Xiang-Yang Zhong, Don Vu, Bärbel Schröfelbauer, Young Chang Kim, Alexander Hoffmann, Inder M. Verma, Gourisankar Ghosh, Tom Huxford
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pbio.0040434

The Structure of an RNAi Polymerase Links RNA Silencing and Transcription
Cited by: 86
Author(s): Paula S. Salgado, Minni R. L. Koivunen, Eugene V. Makeyev, Dennis H. Bamford, David I. Stuart, Jonathan M. Grimes
Software Mentions: 1
Published: almost 19 years ago

10.1371/journal.pbio.0050263

Nicotinamide Riboside Kinase Structures Reveal New Pathways to NAD+
Cited by: 127
Author(s): W. Tempel, Wael M. Rabeh, Katrina L. Bogan, Peter Belenky, Marzena Wójcik, Heather F. Seidle, L. Nedyalkova, Tianle Yang, Anthony A. Sauve, Hee Won Park, Charles Brenner
Software Mentions: 1
Published: about 18 years ago

10.1371/journal.pbio.0050318

Draft Crystal Structure of the Vault Shell at 9-Å Resolution
Cited by: 43
Author(s): D. Anderson, Valerie A. Kickhoefer, Stuart A. Sievers, Leonard H. Rome, David Eisenberg
Software Mentions: 1
Published: almost 18 years ago

10.1371/journal.pbio.1001571

Dual Host-Virus Arms Races Shape an Essential Housekeeping Protein
Cited by: 121
Author(s): Ann Demogines, Jonathan Abraham, Hyeryun Choe, Michael Farzan, Sara L. Sawyer
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pbio.0060227

Identification of COUP-TFII Orphan Nuclear Receptor as a Retinoic Acid–Activated Receptor
Cited by: 174
Author(s): S.W. Kruse, Kelly Suino-Powell, Xuemei Zhou, Jennifer E Kretschman, R.A. Reynolds, Clemens Vonrhein, Yong Xu, Liliang Wang, Sophia Y. Tsai, Ming‐Jer Tsai, H. Eric Xu
Software Mentions: 1
Published: about 17 years ago

10.1371/journal.pbio.2006525

Intramembrane ionic protein–lipid interaction regulates integrin structure and function
Cited by: 9
Author(s): Jun Guo, Youhua Zhang, Hua Li, Huiying Chu, Qinshu Wang, Shanwen Jiang, Yan Li, Hong‐Bin Shen, Guohui Li, Jianfeng Chen, Chenqi Xu
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pbio.2004303

Communication across the bacterial cell envelope depends on the size of the periplasm
Cited by: 92
Author(s): Abir T. Asmar, Josie L. Ferreira, Eli J Cohen, Seung-Hyun Cho, Morgan Beeby, Kelly T. Hughes, Jean-François Collet
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pbio.0050017

Structural and Functional Diversity of the Microbial Kinome
Cited by: 248
Author(s): Natarajan Kannan, Susan S. Taylor, Yufeng Zhai, J. Craig Venter, Gerard Manning
Software Mentions: 1
Published: over 18 years ago

10.1371/journal.pcbi.1003741

Structure-Based Druggability Assessment of the Mammalian Structural Proteome with Inclusion of Light Protein Flexibility
Cited by: 28
Author(s): Kathryn Loving, Andy Lin, Alan C. Cheng
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pcbi.1004704

The Molecular Basis of Polyunsaturated Fatty Acid Interactions with the Shaker Voltage-Gated Potassium Channel
Cited by: 49
Author(s): Samira Yazdi, Matthias Stein, Fredrik Elinder, Magnus Andersson, Erik Lindahl
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pcbi.1004826

Dynamic Allostery Mediated by a Conserved Tryptophan in the Tec Family Kinases
Cited by: 37
Author(s): Nikita Chopra, Thomas E. Wales, Rajiv Joseph, Scott E. Boyken, John R. Engen, Robert L. Jernigan, Amy H. Andreotti
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pcbi.1003464

The Free Energy Profile of Tubulin Straight-Bent Conformational Changes, with Implications for Microtubule Assembly and Drug Discovery
Cited by: 34
Author(s): Liang-You Peng, Monica T. Hsu, Massimiliano Bonomi, David A. Agard, Matthew P. Jacobson
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pcbi.1002807

Electron Transfer Interactome of Cytochrome c
Cited by: 25
Author(s): Alexander N. Volkov, Nico A. J. van Nuland
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pcbi.1002279

Role of Histone Tails in Structural Stability of the Nucleosome
Cited by: 98
Author(s): Mithun Biswas, Karine Voltz, Jeremy C. Smith, Jörg Langowski
Software Mentions: 1
Published: almost 14 years ago

10.1371/journal.pcbi.1004461

DynaFace: Discrimination between Obligatory and Non-obligatory Protein-Protein Interactions Based on the Complex’s Dynamics
Cited by: 9
Author(s): Seren Soner, Pemra Ozbek, José Ignacio Garzón, Nir Ben‐Tal, Türkan Haliloğlu
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pcbi.1006503

Demonstrating aspects of multiscale modeling by studying the permeation pathway of the human ZnT2 zinc transporter
Cited by: 10
Author(s): Yarden Golan, Raphael Alhadeff, Fabian Glaser, Assaf Ganoth, Arieh Warshel, Yehuda G. Assaraf
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0174921

Alteration of the α1β2/α2β1 subunit interface contributes to the increased hemoglobin-oxygen affinity of high-altitude deer mice
Cited by: 4
Author(s): Noriko Inoguchi, Nobuhiro Mizuno, Seiki Baba, Takashi Kumasaka, Chandrasekhar Natarajan, Jay F. Storz, Hideaki Moriyama
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0120492

Cardiac Contractility Structure-Activity Relationship and Ligand-Receptor Interactions; the Discovery Of Unique and Novel Molecular Switches in Myosuppressin Signaling
Cited by: 11
Author(s): Megan Leander, Chloe Bass, Kathryn Marchetti, Benjamin F. Maynard, Juan Pedro Wulff, Sheila Ons, Robert C. Nichols
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0083609

A Genetically Encoded Reporter for Real-Time Imaging of Cofilin-Actin Rods in Living Neurons
Cited by: 19
Author(s): Jianjie Mi, Alisa E. Shaw, Chi W. Pak, Keifer P. Walsh, Laurie S. Minamide, Ben C. Bernstein, Thomas Kühn, James R. Bamburg
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0090487

Shedding Some Light over the Floral Metabolism by Arum Lily (Zantedeschia aethiopica) Spathe De Novo Transcriptome Assembly
Cited by: 17
Author(s): Elizabete de Souza Cândido, Gabriel da Rocha Fernandes, Sérgio Amorim de Alencar, Marlon Henrique Cardoso, Stella Maris de Freitas Lima, Vívian de Jesus Miranda, William F. Porto, Diego O. Nolasco, Nelson G. Oliveira-Júnior, Aulus Estevão Anjos de Deus Barbosa, Robert Pogue, Taia Maria Berto Rezende, Simoni Campos Dias, Octávio L. Franco
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0162000

Blocking the Interactions between Calcium-Bound S100A12 Protein and the V Domain of RAGE Using Tranilast
Cited by: 16
Author(s): Jian Wei Chiou, Brian Fu, Ruey Hwang Chou, Chin Yu
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0181783

Synthesis of novel coumarin nucleus-based DPA drug-like molecular entity: In vitro DNA/Cu(II) binding, DNA cleavage and pro-oxidant mechanism for anticancer action
Cited by: 20
Author(s): Shahper N. Khan, Ali Mohammed Malla, Atif Zafar, Imrana Naseem
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0083461

Ligand Recognition by the TPR Domain of the Import Factor Toc64 from Arabidopsis thaliana
Cited by: 12
Author(s): Rashmi Panigrahi, Abdussalam Adina-Zada, James Whelan, Alice Vrielink
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0086918

Crystal Structure and Self-Interaction of the Type VI Secretion Tail-Tube Protein from Enteroaggregative Escherichia coli
Cited by: 41
Author(s): Badreddine Douzi, S. Spinelli, Stéphanie Blangy, Alain Roussel, Éric Durand, Yannick R. Brunet, Éric Cascales, Christian Cambillau
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0052679

A Sequence in Subdomain 2 of DBL1α of Plasmodium falciparum Erythrocyte Membrane Protein 1 Induces Strain Transcending Antibodies
Cited by: 11
Author(s): Karin Blomqvist, Letusa Albrecht, María del Pilar Quintana, Davide Angeletti, Nicolas Joannin, Arnaud Chêne, Kirsten Moll, Mats Wahlgren
Software Mentions: 1
Published: almost 13 years ago

10.1371/journal.pone.0022348

High Resolution Structure of the ba3 Cytochrome c Oxidase from Thermus thermophilus in a Lipidic Environment
Cited by: 110
Author(s): Theresa Tiefenbrunn, Wei Liu, Ying Chen, Vsevolod Katritch, C.D. Stout, James A. Fee, Vadim Cherezov
Software Mentions: 1
Published: over 14 years ago

10.1371/journal.pone.0177090

Structural and functional mapping of Rtg2p determinants involved in retrograde signaling and aging of Saccharomyces cerevisiae
Cited by: 7
Author(s): Rafaela Maria Rios-Anjos, Vittoria de Lima Camandona, Lucas Bleicher, José Ribamar Ferreira-Júnior
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0063666

Engineering Pseudomonas protegens Pf-5 for Nitrogen Fixation and its Application to Improve Plant Growth under Nitrogen-Deficient Conditions
Cited by: 61
Author(s): Lorena Setten, Gabriela Soto, Matteo Mozzicafreddo, Ana Romina Fox, Christian Lisi, Massimiliano Cuccioloni, Mauro Angeletti, Elba Pagano, Antonio Díaz-Paleo, Nicolás Daniel Ayub
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0036267

Structural and Mutational Studies on Substrate Specificity and Catalysis of Salmonella typhimurium D-Cysteine Desulfhydrase
Cited by: 16
Author(s): S.R. Bharath, S. Bisht, R.K. Harijan, H.S. Savithri, M.R.N. Murthy
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0077437

Identification and Characterization of a Novel Trehalose Synthase Gene Derived from Saline-Alkali Soil Metagenomes
Cited by: 33
Author(s): Ling Jiang, Ming Tsan Lin, Yang Zhang, Yanping Li, Xing‐You Xu, Shuang Li, He Huang
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0023815

Molecular Basis of Ligand Dissociation in β-Adrenergic Receptors
Cited by: 78
Author(s): Ángel F. González, Tomás Pérez-Acle, Leonardo Pardo, Xavier Deupí
Software Mentions: 1
Published: about 14 years ago