10.1016/j.jbc.2021.100506

Structural basis for the DNA-binding activity of human ARID4B Tudor domain
Cited by: 7
Author(s): Jie Ren, Hongwei Yao, Wanhui Hu, Sarah Perrett, Weibin Gong, Yingang Feng
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jbc.2021.100385

Insights into the dual cleavage activity of the GH16 laminarinase enzyme class on β-1,3 and β-1,4 glycosidic bonds
Cited by: 6
Author(s): M.V. Liberato, Érica T. Prates, Thiago Augusto Gonçalves, Amanda Bernardes, Nathália Vilela, Juliana Fattori, Gabriela Cristina Ematsu, Mariana Chinaglia, Emerson Rodrigo Machi Gomes, Ana Carolina Migliorini Figueira, André Damásio, Igor Polikarpov, Munir S. Skaf, Fábio M. Squina
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jbc.2021.100679

A versatile cis-prenyltransferase from Methanosarcina mazei catalyzes both C- and O-prenylations
Cited by: 2
Author(s): Miyako Okada, Hajime Unno, Koh-ichi Emi, Mayuko Matsumoto, Hisashi Hemmi
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jbc.2021.100321

Structural characterization of HIV-1 matrix mutants implicated in envelope incorporation
Cited by: 5
Author(s): Gunnar N. Eastep, Ruba H. Ghanam, Todd Green, Jamil S. Saad
Software Mentions: 2
Published: almost 5 years ago

10.1107/S0907444913021811

SCEDS: protein fragments for molecular replacement in<i>Phaser</i>
Cited by: 16
Author(s): Airlie J. McCoy, Robert A. Nicholls, Thomas R. Schneider
Software Mentions: 2
Published: about 12 years ago

10.1016/j.jbc.2021.100286

Pantoea stewartii WceF is a glycan biofilm-modifying enzyme with a bacteriophage tailspike-like fold
Cited by: 5
Author(s): Tobias Irmscher, Yvette Roske, Igor Gayk, Valentin Dunsing, Salvatore Chiantia, Udo Heinemann, Stefanie Barbirz
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jbc.2021.100684

Crystal structure of the catalytic domain of botulinum neurotoxin subtype A3
Cited by: 3
Author(s): Oneda Leka, Yufan Wu, Xiao Dan Li, Richard A. Kammerer
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.014005

Structural comparisons of host and African swine fever virus dUTPases reveal new clues for inhibitor development
Cited by: 6
Author(s): Rui Liang, Gang Wang, Ding Zhang, Gang Ye, Mengxia Li, Yuejun Shi, Jiale Shi, Huanchun Chen, Guiqing Peng
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.016313

Active site metals mediate an oligomeric equilibrium in Plasmodium M17 aminopeptidases
Cited by: 2
Author(s): Tess R. Malcolm, Matthew J. Belousoff, Hariprasad Venugopal, Natalie A. Borg, N. Drinkwater, Sarah C. Atkinson, Sheena McGowan
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.016004

Dissecting the low catalytic capability of flavin-dependent halogenases
Cited by: 21
Author(s): Aisaraphon Phintha, Kridsadakorn Prakinee, A. Jaruwat, Narin Lawan, Surawit Visitsatthawong, Chadaporn Kantiwiriyawanitch, Warangkhana Songsungthong, Duangthip Trisrivirat, Pirom Chenprakhon, Adrian J. Mulholland, Karl‐Heinz van Pée, P. Chitnumsub, Pimchai Chaiyen
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.015995

Post-translational modification analysis of Saccharomyces cerevisiae histone methylation enzymes reveals phosphorylation sites of regulatory potential
Cited by: 8
Author(s): Ryan J. Separovich, Mandy W.M. Wong, Tyler Chapman, Eve Slavich, Joshua J. Hamey, Marc R. Wilkins
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.015951

The bacterial cell division protein fragment EFtsN binds to and activates the major peptidoglycan synthase PBP1b
Cited by: 15
Author(s): Adrien Boes, Frédéric Kerff, R. Herman, Thierry Touzé, Eefjan Breukink, Mohammed Terrak
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.015376

Structure of an ancestral ADP-dependent kinase with fructose-6P reveals key residues for binding, catalysis, and ligand-induced conformational changes
Cited by: 4
Author(s): Sebastián M. Muñoz, Víctor Castro‐Fernández, Victoria Guixé
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.REV120.011985

Regulation of translation by one-carbon metabolism in bacteria and eukaryotic organelles
Cited by: 18
Author(s): Sunil Shetty, Umesh Varshney
Software Mentions: 2
Published: almost 5 years ago

10.1016/j.jbc.2021.100713

The mycobacterial proteasomal ATPase Mpa forms a gapped ring to engage the 20S proteasome
Cited by: 3
Author(s): Yuanyuan Yin, Amanda Kovach, Hao-Chi Hsu, K. Heran Darwin, Huilin Li
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.014924

Evolving the naturally compromised chorismate mutase from Mycobacterium tuberculosis to top performance
Cited by: 8
Author(s): Jūrate ̇ Fahrig-Kamarauskait≑, Kathrin Würth-Roderer, Helen V. Thorbjørnsrud, Susanne Mailand, Ute Krengel, Peter Kast
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA120.013316

The major subunit of widespread competence pili exhibits a novel and conserved type IV pilin fold
Cited by: 16
Author(s): Devon Sheppard, Jamie-Lee Berry, Rémi Denise, Eduardo P. C. Rocha, Steve Matthews, Vladimir Pelicic
Software Mentions: 2
Published: over 5 years ago

10.1074/jbc.RA120.016295

Antibiotic binding releases autoinhibition of the TipA multidrug-resistance transcriptional regulator
Cited by: 2
Author(s): Xuping Jiang, Linjuan Zhang, Maikun Teng, Li Xu
Software Mentions: 2
Published: almost 5 years ago

10.1074/jbc.RA119.008817

A knottin scaffold directs the CXC-chemokine–binding specificity of tick evasins
Cited by: 21
Author(s): Angela Lee, Maud Déruaz, Christopher J. Lynch, Graham Davies, Khushboo Singh, Yara Alenazi, James R. O. Eaton, Akane Kawamura, Jeffrey P. Shaw, Amanda E. I. Proudfoot, João Marcos Domingues Dias, Shoumo Bhattacharya
Software Mentions: 2
Published: over 6 years ago

10.1186/s40104-018-0260-2

Molecular characterization and expression patterns of Nanog gene validating its involvement in the embryonic development and maintenance of spermatogonial stem cells of farmed carp, Labeo rohita
Cited by: 14
Author(s): Swagat Kumar Patra, Vemulawada Chakrapani, Meenati Manjari Soren, Jitendra Kumar Sundaray, Manoj Panda, Hirak Kumar Barman
Software Mentions: 2
Published: over 7 years ago

10.1074/jbc.RA119.009437

Human leukocyte antigen (HLA) class II peptide flanking residues tune the immunogenicity of a human tumor-derived epitope
Cited by: 7
Author(s): Bruce J. MacLachlan, Garry Dolton, Athanasios Papakyriakou, Alexander Greenshields‐Watson, Georgina H Mason, Andrea J. A. Schauenburg, Matthieu Besneux, Barbara Szomolay, Tim Elliott, Andrew K. Sewell, Awen Gallimore, P.J. Rizkallah, David K. Cole, Andrew Godkin
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA120.015444

Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors
Cited by: 15
Author(s): Sai Shashank Chavali, Sachitanand M. Mali, Jermaine L. Jenkins, Rudi Fasan, Joseph E. Wedekind
Software Mentions: 2
Published: almost 5 years ago

10.1172/jci.insight.135459

Intrahepatic heteropolymerization of M and Z alpha-1-antitrypsin
Cited by: 13
Author(s): Mattia Laffranchi, Emma Elliston, Elena Miranda, Juan Pérez, Riccardo Ronzoni, Alistair M. Jagger, Nina Heyer-Chauhan, Mark Brantly, Annamaria Fra, David A. Lomas, James A. Irving
Software Mentions: 2
Published: over 5 years ago

10.1080/19768354.2020.1808529

The immunostimulatory effect of indole-6-carboxaldehyde isolated from <i>Sargassum thunbergii</i> <b>(Mertens) Kuntze</b> in RAW 264.7 macrophages
Cited by: 5
Author(s): Cheol Park, Hyun Hwangbo, Hyesook Lee, Gi‐Young Kim, Hee‐Jae Cha, Sung Hyun Choi, Suhkmann Kim, Heui‐Soo Kim, Seok Joong Yun, Wun-Jae Kim, You‐Jin Jeon, Yung Hyun Choi
Software Mentions: 2
Published: over 5 years ago

10.3390/insects12090814

Hermetia illucens (L.) (Diptera: Stratiomyidae) Odorant Binding Proteins and Their Interactions with Selected Volatile Organic Compounds: An In Silico Approach
Cited by: 24
Author(s): Carmen Scieuzo, Marisa Nardiello, Donatella Farina, Andrea Scala, Jonathan A. Cammack, Jeffery K. Tomberlin, Heiko Vogel, Rosanna Salvia, Krishna Persaud, Patrizia Falabella
Software Mentions: 2
Published: about 4 years ago

10.1186/s40203-016-0020-y

In silico proposition to predict cluster of B- and T-cell epitopes for the usefulness of vaccine design from invasive, virulent and membrane associated proteins of C. jejuni
Cited by: 20
Author(s): Tahirah Yasmin, Salma Akter, Mouly Debnath, Akio Ebihara, Tsutomu Nakagawa, A.H.M. Nurun Nabi
Software Mentions: 2
Published: over 9 years ago

10.1038/s41438-021-00467-5

Functional conservation of the grapevine candidate gene INNER NO OUTER for ovule development and seed formation
Cited by: 12
Author(s): Valentina di Rienzo, Zahra Imanifard, Isabella Mascio, Charles S. Gasser, Debra J. Skinner, Ciro Leonardo Pierri, Martina Marini, Valentina Fanelli, Wilma Sabetta, Cinzia Montemurro, Diana Bellin
Software Mentions: 2
Published: almost 5 years ago

10.1093/gigascience/gix093

Panax ginseng genome examination for ginsenoside biosynthesis
Cited by: 123
Author(s): Jiang Xu, Yang Chu, Baosheng Liao, Shaobo Xiao, Qinggang Yin, Rui Bai, He Su, Lixin Dong, Xiwen Li, Jun Qian, Jingjing Zhang, Yujun Zhang, Xiaoyan Zhang, Mingli Wu, Jie Zhang, Guozheng Li, Lei Zhang, Zhenzhan Chang, Yuebin Zhang, Zhengwei Jia, Zhixiang Liu, Daniel Ntiamoah Afreh, Ruth Nahurira, Lianjuan Zhang, Ruiyang Cheng, Yingjie Zhu, Guangwei Zhu, Wei Rao, Chao Zhou, Lin Qiao, Zhixing Huang, Yung Chi Cheng, Shilin Chen
Software Mentions: 2
Published: about 8 years ago

10.1016/j.immuni.2020.02.014

Butyrophilin-2A1 Directly Binds Germline-Encoded Regions of the Vγ9Vδ2 TCR and Is Essential for Phosphoantigen Sensing
Cited by: 144
Author(s): Mohindar Murugesh Karunakaran, Carrie R. Willcox, Mahboob Salim, Daniel Paletta, Alina Suzann Fichtner, Angela Noll, Lisa Starick, Anna Nöhren, Charlotte R Begley, Katie A Berwick, Raphaël A. G. Chaleil, Vincent Pitard, Julie Déchanet‐Merville, Paul A. Bates, Brigitte Kimmel, Timothy J. Knowles, Volker Kunzmann, Lutz Walter, Mark Jeeves, Fiyaz Mohammed, Benjamin E. Willcox, Thomas Herrmann
Software Mentions: 2
Published: over 5 years ago

10.1111/1744-7917.12564

Comparative analysis of C‐type lectin domain proteins in the ghost moth, <i>Thitarodes xiaojinensis</i> (Lepidoptera: Hepialidae)
Cited by: 18
Author(s): Qian Meng, Ji‐Hong Zhang, Huan Zhang, Guiling Zhou, Ruoyao Ni, Yanni Zhao, Qilian Qin, Zhen Zou
Software Mentions: 2
Published: over 7 years ago

10.4172/2155-6148.1000218

Human μ Opioid Receptor Models with Evaluation of the Accuracy Using the Crystal Structure of the Murine μ Opioid Receptor
Cited by: 3
Author(s): Jose Manuel Perez‐Aguilar, Jeffery G. Saven, Renyu Liu
Software Mentions: 2
Published: almost 14 years ago

10.1074/jbc.RA120.015050

KPC-2 β-lactamase enables carbapenem antibiotic resistance through fast deacylation of the covalent intermediate
Cited by: 11
Author(s): Shrenik Mehta, I. Furey, O.A. Pemberton, David M. Boragine, Yu Chen, Timothy Palzkill
Software Mentions: 2
Published: almost 5 years ago

10.1073/pnas.1911880116

Intrinsic elasticity of nucleosomes is encoded by histone variants and calibrated by their binding partners
Cited by: 37
Author(s): Daniël P. Melters, Mary Pitman, Tatini Rakshit, Emilios K. Dimitriadis, Minh Bui, Garegin A. Papoian, Yamini Dalal
Software Mentions: 2
Published: about 6 years ago

10.1186/gb-2008-9-8-r121

Proteopedia - a scientific 'wiki' bridging the rift between 3D structure and function of biomacromolecules
Cited by: 86
Author(s): Eran Hodis, Jaime Prilusky, Eric Martz, Israel Silman, John Moult, Joel L. Sussman
Software Mentions: 2
Published: almost 18 years ago

10.1038/s41436-021-01134-9

Computational prediction of protein subdomain stability in MYBPC3 enables clinical risk stratification in hypertrophic cardiomyopathy and enhances variant interpretation
Cited by: 8
Author(s): Andrea D. Thompson, Adam S. Helms, Anamika Kannan, Jaime Yob, Neal K. Lakdawala, Samuel G. Wittekind, Alexandre C. Pereira, Daniel Jacoby, Steven D. Colan, Euan A. Ashley, Sara Saberi, James S. Ware, Jodie Ingles, Christopher Semsarian, Michelle Michels, Francesco Mazzarotto, Iacopo Olivotto, Carolyn Y. Ho, Sharlene M. Day
Software Mentions: 2
Published: over 4 years ago

10.1093/gbe/evz266

Evolutionary History of the Toll-Like Receptor Gene Family across Vertebrates
Cited by: 64
Author(s): Guangshuai Liu, Huanxin Zhang, Chao Zhao, Honghai Zhang
Software Mentions: 2
Published: almost 6 years ago

10.3389/fmicb.2021.630293

Generation of Tetracycline and Rifamycin Resistant Chlamydia Suis Recombinants
Cited by: 3
Author(s): H. R. Marti, Sankhya Bommana, Timothy D. Read, Theresa Pesch, Barbara Prähauser, Deborah Dean, Nicole Borel
Software Mentions: 2
Published: over 4 years ago

10.1186/s12575-020-00138-0

Mutational Analysis of Ocriplasmin to Reduce Proteolytic and Autolytic Activity in Pichia pastoris
Cited by: 3
Author(s): Roghayyeh Baghban, Safar Farajnia, Younes Ghasemi, Reyhaneh Hoseinpoor, Azam Safary, Mojtaba Mortazavi, Nosratollah Zarghami
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2020.598789

Isolation, Characterization and Structure Elucidation of a Novel Lantibiotic From Paenibacillus sp.
Cited by: 10
Author(s): Jerzy Karczewski, Stephen P Krasucki, Papa Nii Asare‐Okai, Carl Diehl, Andrew Friedman, C. M. Brown, Yukari Maezato, Stephen J. Streatfield
Software Mentions: 2
Published: almost 5 years ago

10.1242/bio.046961

Targeting of copper-trafficking chaperones causes gene-specific systemic pathology in<i>Drosophila melanogaster</i>: prospective expansion of mutational landscapes that regulate tumor resistance to cisplatin
Cited by: 6
Author(s): Eleni I. Theotoki, Athanassios D. Velentzas, Stamatia A. Katarachia, Νικολαοσ Παπανδρεου, Nikolas Kalavros, Sofia N. Pasadaki, Aikaterini F. Giannopoulou, Panagiotis Giannios, Vassiliki A. Iconomidou, Eumorphia G. Konstantakou, Ema Anastasiadou, Issidora S. Papassideri, Dimitrios J. Stravopodis
Software Mentions: 2
Published: almost 7 years ago

10.1107/S1399004715002308

Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array
Cited by: 67
Author(s): A.Y. Lyubimov, Thomas D. Murray, Antoine Koehl, Ismail Emre Araci, Monarin Uervirojnangkoorn, Oliver B. Zeldin, Aina E. Cohen, S. Michael Soltis, E.L. Baxter, Aaron S. Brewster, Nicholas K. Sauter, Axel T. Brunger, James M. Berger
Software Mentions: 2
Published: over 10 years ago

10.3390/biology2041296

Dynamic Programming Used to Align Protein Structures with a Spectrum Is Robust
Cited by: 3
Author(s): Allen Holder, Jacqueline C. Simon, Jonathon Strauser, Jonathan Taylor, Yosi Shibberu
Software Mentions: 2
Published: almost 12 years ago

10.1590/1678-4685-GMB-2020-0393

Structural analysis of new compound heterozygous variants in PEPD gene identified in a patient with Prolidase Deficiency diagnosed by exome sequencing
Cited by: 1
Author(s): Natália Duarte Linhares, P. Wilk, E. Wator, Meire A. Tostes, M.S. Weiss, Sérgio D.J. Pena
Software Mentions: 2
Published: almost 5 years ago

10.3390/biology10010021

Targeting Penicillium expansum GMC Oxidoreductase with High Affinity Small Molecules for Reducing Patulin Production
Cited by: 4
Author(s): Vincenzo Tragni, Pietro Cotugno, Anna Grassi, Maria Maddalena Cavalluzzi, Annamaria Mincuzzi, Giovanni Lentini, Simona Marianna Sanzani, Antonio Ippolito, Ciro Leonardo Pierri
Software Mentions: 2
Published: almost 5 years ago

10.3390/biology9090294

A Poplar Rust Effector Protein Associates with Protein Disulfide Isomerase and Enhances Plant Susceptibility
Cited by: 8
Author(s): Mst Hur Madina, Saifur Rahman, Xiaoqiang Huang, Yang Zhang, Huanquan Zheng, Hugo Germain
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2018.01942

Look and Outlook on Enzyme-Mediated Macrolide Resistance
Cited by: 66
Author(s): Tolou Golkar, Michał Zieliński, A.M. Berghuis
Software Mentions: 2
Published: about 7 years ago

10.1021/acsnano.1c00155

Effect of Water Models on Transmembrane Self-Assembled Cyclic Peptide Nanotubes
Cited by: 11
Author(s): Martín Calvelo, Charlotte I. Lynch, Juan R. Granja, Mark S. P. Sansom, Rebeca García‐Fandiño
Software Mentions: 2
Published: over 4 years ago

10.1007/s00251-019-01118-9

Conservation of molecular and cellular phenotypes of invariant NKT cells between humans and non-human primates
Cited by: 8
Author(s): Krystle K. Q. Yu, Damien B. Wilburn, Joshua A. Hackney, Patricia A. Darrah, Kathryn E. Foulds, Cyan James, Malisa T. Smith, Lichen Jing, Robert A. Seder, Mario Roederer, David M. Koelle, Willie J. Swanson, Chetan Seshadri
Software Mentions: 2
Published: over 6 years ago

10.1186/s40203-015-0014-1

Molecular docking studies on InhA, MabA and PanK enzymes from Mycobacterium tuberculosis of ellagic acid derivatives from Ludwigia adscendens and Trewia nudiflora
Cited by: 13
Author(s): Jamil A. Shilpi, Mohammad Tuhin Ali, Sanjib Saha, Shihab Hasan, Alexander I. Gray, Véronique Seidel
Software Mentions: 2
Published: almost 10 years ago

10.1155/2015/813047

<i>In Silico</i>Identification of Highly Conserved Epitopes of Influenza A H1N1, H2N2, H3N2, and H5N1 with Diagnostic and Vaccination Potential
Cited by: 17
Author(s): José Esteban Muñoz-Medina, Carlos Javier Sánchez-Vallejo, Alfonso Méndez‐Tenorio, Irma Eloísa Monroy-Muñoz, Javier Ángeles-Martínez, Andrea Santos Coy-Arechavaleta, Clara Esperanza Santacruz-Tinoco, Joaquín González-Ibarra, Yu-Mei Anguiano-Hernández, César González-Bonilla, Eva Ramón-Gallegos, José Alberto Díaz-Quiñonez
Software Mentions: 2
Published: almost 11 years ago

10.1107/S0907444913025250

Improvements in the order, isotropy and electron density of glypican-1 crystals by controlled dehydration
Cited by: 13
Author(s): W. Awad, Gabriel Svensson Birkedal, Marjolein M.G.M. Thunnissen, Katrin Mani, D.T. Logan
Software Mentions: 2
Published: almost 12 years ago

10.1107/S2059798319000081

Engineered variants provide new insight into the structural properties important for activity of the highly dynamic, trimeric protein disulfide isomerase ScsC from Proteus mirabilis
Cited by: 5
Author(s): Emily Furlong, Fabian Kurth, Lakshmanane Premkumar, Andrew E. Whitten, Jennifer L. Martin
Software Mentions: 2
Published: over 6 years ago

10.1002/ana.24073

<i>GRIN2B</i> mutations in west syndrome and intellectual disability with focal epilepsy
Cited by: 176
Author(s): Johannes R. Lemke, Rik Hendrickx, Kirsten Geider, Bodo Laube, Michael Schwake, Robert J. Harvey, Victoria M. James, Alex Pepler, Isabelle Steiner, Konstanze Hörtnagel, John Neidhardt, Susanne Ruf, Markus Wolff, Deborah Bartholdi, Roberto Caraballo, Konrad Platzer, Arvid Suls, Peter De Jonghe, Saskia Biskup, Sarah Weckhuysen
Software Mentions: 2
Published: almost 12 years ago

10.3390/genes12091345

Three ParA Dimers Cooperatively Assemble on Type Ia Partition Promoters
Cited by: 3
Author(s): François Boudsocq, Maya Salhi, Sophie Barbe, Jean‐Yves Bouet
Software Mentions: 2
Published: about 4 years ago

10.1107/S1600576715024942

Extension of the sasCIF format and its applications for data processing and deposition
Cited by: 17
Author(s): Michael Kachala, John D. Westbrook, Dmitri I. Svergun
Software Mentions: 2
Published: almost 10 years ago

10.1074/jbc.M113.454496

Mechanism of Ferrous Iron Binding and Oxidation by Ferritin from a Pennate Diatom
Cited by: 53
Author(s): Stephanie Pfaffen, Raz Abdulqadir, Nick E. Le Brun, M.E.P. Murphy
Software Mentions: 2
Published: over 12 years ago

10.1074/jbc.RA119.008610

Alternative folding to a monomer or homopolymer is a common feature of the type 1 pilus subunit FimA from enteroinvasive bacteria
Cited by: 7
Author(s): Dawid Zyla, A.E. Prota, Guido Capitani, Rudi Glockshuber
Software Mentions: 2
Published: over 6 years ago

10.1074/jbc.RA120.012636

MutT homologue 1 (MTH1) removes N6-methyl-dATP from the dNTP pool
Cited by: 9
Author(s): Emma Rose Scaletti, Karl S. A. Vallin, Lars Bräutigam, Antonio Sarno, Ulrika Warpman Berglund, Thomas Helleday, Pål Stenmark, Ann-Sofie Jemth
Software Mentions: 2
Published: over 5 years ago

10.1107/S1399004713033634

Multi-PAS domain-mediated protein oligomerization of PpsR from<i>Rhodobacter sphaeroides</i>
Cited by: 11
Author(s): Udo Heintz, Anton Meinhart, Andreas Winkler
Software Mentions: 2
Published: over 11 years ago

10.1107/S2059798317006349

Crystal structure of<i>Yersinia pestis</i>virulence factor YfeA reveals two polyspecific metal-binding sites
Cited by: 14
Author(s): C.D. Radka, Lawrence J. DeLucas, Landon Wilson, Matthew B. Lawrenz, Robert D. Perry, Stephen G. Aller
Software Mentions: 2
Published: over 8 years ago

10.1074/jbc.RA119.012372

S-Glutathionylation of human inducible Hsp70 reveals a regulatory mechanism involving the C-terminal α-helical lid
Cited by: 20
Author(s): Jie Yang, Hong Zhang, Weibin Gong, Zhenyan Liu, Hui‐Wen Wu, Wanhui Hu, Xinxin Chen, Lei Wang, Si Wu, Chang Chen, Sarah Perrett
Software Mentions: 2
Published: over 5 years ago

10.1107/S2059798319010878

X-ray structure of the direct electron transfer-type FAD glucose dehydrogenase catalytic subunit complexed with a hitchhiker protein
Cited by: 17
Author(s): Hiromi Yoshida, Katsuhiro Kojima, Masaki Shiota, Keiichi Yoshimatsu, Tomohiko Yamazaki, Stefano Ferri, Wakako Tsugawa, Shigehiro Kamitori, Koji Sode
Software Mentions: 2
Published: about 6 years ago

10.1107/S1399004715001443

Structure of the N-terminal domain of the protein Expansion: an `Expansion' to the Smad MH2 fold
Cited by: 8
Author(s): Mads Beich-Frandsen, Eric Aragón, Marta Llimargas, J. Benach, Antoni Riéra, Joan Pous, María J. Macias
Software Mentions: 2
Published: over 10 years ago

10.3390/antibiotics9030123

A Novel, Integron-Regulated, Class C β-Lactamase
Cited by: 12
Author(s): Maria-Elisabeth Böhm, Mohammad Reza Razavi, Carl-Fredrik Flach, D. G. Joakim Larsson
Software Mentions: 2
Published: over 5 years ago

10.1107/S2059798321006513

Exploring ligand dynamics in protein crystal structures with ensemble refinement
Cited by: 3
Author(s): Octav Caldararu, Vilhelm Ekberg, D.T. Logan, Esko Oksanen, Ulf Ryde
Software Mentions: 2
Published: over 4 years ago

10.1107/S2059798319011938

The flavin mononucleotide cofactor in α-hydroxyacid oxidases exerts its electrophilic/nucleophilic duality in control of the substrate-oxidation level
Cited by: 2
Author(s): S.Y. Lyu, Kuan Hung Lin, Hsien‐Wei Yeh, Yi Shan Li, Chun Man Huang, Yung Lin Wang, Hao Wei Shih, N.S. Hsu, Chang Jer Wu, Tsung Lin Li
Software Mentions: 2
Published: about 6 years ago

10.1107/S1399004715018519

Sent packing: protein engineering generates a new crystal form of<i>Pseudomonas aeruginosa</i>DsbA1 with increased catalytic surface accessibility
Cited by: 5
Author(s): Róisín M. McMahon, M. Coincon, Stephanie Tay, Begoña Heras, Craig J. Morton, M.J. Scanlon, Jennifer L. Martin
Software Mentions: 2
Published: almost 10 years ago

10.1107/S2059798315022482

Initiating heavy-atom-based phasing by multi-dimensional molecular replacement
Cited by: 3
Author(s): Bjørn Panyella Pedersen, Pontus Gourdon, Xiangyu Liu, Jesper Lykkegaard Karlsen, Poul Nissen
Software Mentions: 2
Published: over 9 years ago

10.3390/antib9020010

Ion Binding Properties of a Naturally Occurring Metalloantibody
Cited by: 0
Author(s): Elinaz Farokhi, Jonathan K. Fleming, M. Frank Erasmus, Aaron D Ward, Yunjin Wu, Maria Gaby Rivero de Gutiérrez, Jonathan M. Wojciak, Tom Huxford
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2018.00649

Mechanistic and Structural Insights Into the Unique TetR-Dependent Regulation of a Drug Efflux Pump in Mycobacterium abscessus
Cited by: 24
Author(s): Matthias Richard, Ana Victoria Gutiérrez, Albertus Viljoen, Éric Ghigo, Mickaël Blaise, Laurent Kremer
Software Mentions: 2
Published: over 7 years ago

10.1107/S0907444913018453

Application of the<i>AMPLE</i>cluster-and-truncate approach to NMR structures for molecular replacement
Cited by: 13
Author(s): Jaclyn Bibby, Ronan Keegan, Olga Mayans, Martyn Winn, Daniel J. Rigden
Software Mentions: 2
Published: about 12 years ago

10.1107/S2059798318009397

High-pressure protein crystal structure analysis of <i>Escherichia coli</i> dihydrofolate reductase complexed with folate and NADP⁺
Cited by: 16
Author(s): T. Nagae, Hiroyuki Yamada, Nobuhisa Watanabe
Software Mentions: 2
Published: about 7 years ago

10.1016/j.jbc.2021.100307

Structural basis of trehalose recognition by the mycobacterial LpqY-SugABC transporter
Cited by: 9
Author(s): Christopher M. Furze, Ignacio Delso, Enriqueta Casal, Collette S. Guy, Chloe Seddon, Chelsea M. Brown, Hadyn L. Parker, Anjana Radhakrishnan, Raúl Pacheco-Gómez, Phillip J. Stansfeld, Jesús Angulo, Alexander D. Cameron, Elizabeth Fullam
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2017.02385

Structure–Function Relationship of Aminopeptidase P from Pseudomonas aeruginosa
Cited by: 11
Author(s): Peng Cheng, Li Liu, Changcheng Li, Libang He, Tao Li, Yanjiao Shen, Chao Gao, Ningyu Wang, Yong Xia, Yuanfeng Zhu, Yingjie Song, Qian Lei, Luoting Yu, Rui Bao
Software Mentions: 2
Published: almost 8 years ago

10.1107/S2059798318017047

The crystal structure of the<i>N</i>-acetylglucosamine 2-epimerase from<i>Nostoc</i>sp. KVJ10 reveals the true dimer
Cited by: 5
Author(s): Marie Josée Haglund Halsør, U. Rothweiler, Bjørn Altermark, Inger Lin Uttakleiv Ræder
Software Mentions: 2
Published: almost 7 years ago

10.1107/S2059798319009574

Biochemical and structural explorations of α-hydroxyacid oxidases reveal a four-electron oxidative decarboxylation reaction
Cited by: 4
Author(s): Hsien‐Wei Yeh, Kuan Hung Lin, S.Y. Lyu, Yi Shan Li, Chun Man Huang, Yung Lin Wang, Hao Wei Shih, N.S. Hsu, Chang Jer Wu, Tsung Lin Li
Software Mentions: 2
Published: over 6 years ago

10.1016/j.jbc.2021.100441

Molecular basis of tail-anchored integral membrane protein recognition by the cochaperone Sgt2
Cited by: 14
Author(s): Ku-Feng Lin, Michelle Y. Fry, Shyam Saladi, William M. Clemons
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2017.00541

Crystal Structure of Glyceraldehyde-3-Phosphate Dehydrogenase from the Gram-Positive Bacterial Pathogen A. vaginae, an Immunoevasive Factor that Interacts with the Human C5a Anaphylatoxin
Cited by: 21
Author(s): Javier Querol-García, Francisco Fernández, Ana V. Marín, Sara Gómez, Daniel Fullà, Cecilia Melchor-Tafur, V. Franco-Hidalgo, Sebastián Albertí, Judith Juanhuix, Santiago Rodrı́guez de Córdoba, José R. Regueiro, M. Cristina Vega
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2021.679246

Genetic Characteristics of Human Parainfluenza Virus Types 1–4 From Patients With Clinical Respiratory Tract Infection in China
Cited by: 8
Author(s): Nan Shao, Bo Liu, Yan Xiao, Xinming Wang, Lili Ren, Jie Dong, Lu Sun, Yafang Zhu, Ting Zhang, Fan Yang
Software Mentions: 2
Published: over 4 years ago

10.1107/S0907444913001479

Robust structural analysis of native biological macromolecules from multi-crystal anomalous diffraction data
Cited by: 79
Author(s): Qun Li, Qinglian Liu, Wayne A. Hendrickson
Software Mentions: 2
Published: over 12 years ago

10.1016/j.jbc.2021.100857

Oxalate decarboxylase uses electron hole hopping for catalysis
Cited by: 5
Author(s): Anthony J. Pastore, Ruijie D. Teo, Alvaro Montoya, M.J. Burg, Umar T. Twahir, Steven D. Bruner, David N. Beratan, Alexander Angerhofer
Software Mentions: 2
Published: over 4 years ago

10.1107/S205979832100632X

Structure of the unique tetrameric STENOFOLIA homeodomain bound with target promoter DNA
Cited by: 1
Author(s): Prabhat Kumar Pathak, Fei Zhang, Shu‐Lin Peng, Lifang Niu, Juhi Chaturvedi, Justin Elliott, Yan Xiang, Million Tadege, Junpeng Deng
Software Mentions: 2
Published: over 4 years ago

10.1128/AAC.00123-20

Structure and Molecular Recognition Mechanism of IMP-13 Metallo-β-Lactamase
Cited by: 8
Author(s): Charlotte A Softley, Krzysztof Żak, Mark J. Bostock, Roberto Fino, Richard Xu Zhou, Marta Kolonko, Ramona Mejdi-Nitiu, Hannelore Meyer, Michael Sattler, Grzegorz M. Popowicz
Software Mentions: 2
Published: over 5 years ago

10.1107/S2059798315021683

<i>In meso in situ</i>serial X-ray crystallography of soluble and membrane proteins at cryogenic temperatures
Cited by: 89
Author(s): Chia‐Ying Huang, V. Oliéric, Pikyee Ma, Nicole Howe, Lutz Vogeley, Xiangyu Liu, Rangana Warshamanage, T. Weinert, Ezequiel Panepucci, Brian K. Kobilka, Kay Diederichs, Meitian Wang, Martin Caffrey
Software Mentions: 2
Published: almost 10 years ago

10.1016/j.jbc.2021.100957

The endopeptidase of the maize-affecting Marafivirus type member maize rayado fino virus doubles as a deubiquitinase
Cited by: 5
Author(s): Ankoor Patel, Jessica A.M. McBride, Brian L. Mark
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2020.605705

Discovery of an Antibiotic-Related Small Protein of Biocontrol Strain Pseudomonas sp. Os17 by a Genome-Mining Strategy
Cited by: 1
Author(s): Kasumi Takeuchi, Wataru Tsuchiya, Zui Fujimoto, Kosumi Yamada, Nobutaka Someya, Toshimasa Yamazaki
Software Mentions: 2
Published: almost 5 years ago

10.3389/fmicb.2018.03329

Structural and Physiological Exploration of Salmonella Typhi YfdX Uncovers Its Dual Function in Bacterial Antibiotic Stress and Virulence
Cited by: 6
Author(s): Hye Seon Lee, Mi Kyung Lee, Jun‐Seob Kim, Hae-Ran Lee, Hang‐Sik Shin, Moo‐Seung Lee, Kyeong Sik Jin, Cheol-Hee Kim, Bonsu Ku, Choong-Min Ryu, Seung Jun Kim
Software Mentions: 2
Published: almost 7 years ago

10.3390/antiox10020152

Function and Regulation of Chloroplast Peroxiredoxin IIE
Cited by: 10
Author(s): Anna Dreyer, Patrick Treffon, Daniel Basiry, Anna Maria Józefowicz, Andrea Matros, Hans‐Peter Mock, Karl‐Josef Dietz
Software Mentions: 2
Published: almost 5 years ago

10.1107/S2059798316003065

A generic protocol for protein crystal dehydration using the HC1b humidity controller
Cited by: 14
Author(s): C.M.C. Lobley, James Sandy, Juan Sánchez-Weatherby, Marco Mazzorana, T. Krojer, Radosław P. Nowak, Thomas Sørensen
Software Mentions: 2
Published: over 9 years ago

10.3390/antiox7120171

Crystal Structure of Chloroplastic Thioredoxin f2 from Chlamydomonas reinhardtii Reveals Distinct Surface Properties
Cited by: 16
Author(s): Stéphane D. Lemaire, Daniele Tedesco, Pierre Crozet, Laure Michelet, Simona Fermani, Mirko Zaffagnini, Julien Henri
Software Mentions: 2
Published: almost 7 years ago

10.3390/antiox8080240

Phlorotannins with Potential Anti-tyrosinase and Antioxidant Activity Isolated from the Marine Seaweed Ecklonia stolonifera
Cited by: 55
Author(s): Bandana Manandhar, Aditi Wagle, Su Hui Seong, Pradeep Paudel, Hyeung‐Rak Kim, Hyun Ah Jung, Jae Sue Choi
Software Mentions: 2
Published: over 6 years ago

10.1107/S2059798316001212

Structure of a quinolone-stabilized cleavage complex of topoisomerase IV from<i>Klebsiella pneumoniae</i>and comparison with a related<i>Streptococcus pneumoniae</i>complex
Cited by: 25
Author(s): D. A. Veselkov, Ivan Laponogov, Xiao-Su Pan, Jogitha Selvarajah, Galyna B. Skamrova, Arthur Branstrom, Jana Narasimhan, J. V. N. Vara Prasad, L. Mark Fisher, Mark Sanderson
Software Mentions: 2
Published: over 9 years ago

10.3390/antiox9020180

Pharmacological Targets of Kaempferol Within Inflammatory Pathways—A Hint Towards the Central Role of Tryptophan Metabolism
Cited by: 15
Author(s): Stefanie Hofer, Simon Geisler, Rebecca Lisandrelli, Huu Tung Nguyen, Markus Ganzera, Harald Schennach, Dietmar Fuchs, Julian E. Fuchs, Johanna M. Gostner, Katharina Kurz
Software Mentions: 2
Published: over 5 years ago

10.3389/fmicb.2021.669220

Interrogating the Role of the Two Distinct Fructose-Bisphosphate Aldolases of Bacillus methanolicus by Site-Directed Mutagenesis of Key Amino Acids and Gene Repression by CRISPR Interference
Cited by: 6
Author(s): Kerstin Schultenkämper, Desirée D. Gütle, Marina Gil López, Laura B. Keller, Lin Zhang, Oliver Einsle, Jean‐Pierre Jacquot, Volker F. Wendisch
Software Mentions: 2
Published: over 4 years ago

10.3389/fmicb.2021.632095

Integrated Proteomic and Transcriptomic Analyses Reveal the Roles of Brucella Homolog of BAX Inhibitor 1 in Cell Division and Membrane Homeostasis of Brucella suis S2
Cited by: 2
Author(s): Guangdong Zhang, Fangli Zhong, Lei Chen, Peipei Qin, Junmei Li, Feijie Zhi, Lulu Tian, Dong Zhou, Peng Lin, Huatao Chen, Kai-Fu Tang, Wei Liu, Yaping Jin, Aihua Wang
Software Mentions: 2
Published: almost 5 years ago

10.1107/S2059798321002941

<i>UnityMol</i> prototype for FAIR sharing of molecular-visualization experiences: from pictures in the cloud to collaborative virtual reality exploration in immersive 3D environments
Cited by: 13
Author(s): Xavier Martinez, Marc Baaden
Software Mentions: 2
Published: over 4 years ago

10.3390/antiox8010010

Structural and Biochemical Insights into the Reactivity of Thioredoxin h1 from Chlamydomonas reinhardtii
Cited by: 14
Author(s): Christophe Marchand, Simona Fermani, Jacopo Rossi, Libero Gurrieri, Daniele Tedesco, Julien Henri, Francesca Sparla, Paolo Bernardo Trost, Stéphane D. Lemaire, Mirko Zaffagnini
Software Mentions: 2
Published: almost 7 years ago

10.3389/fmicb.2018.01750

Crystal Structures of R-Type Bacteriocin Sheath and Tube Proteins CD1363 and CD1364 From Clostridium difficile in the Pre-assembled State
Cited by: 12
Author(s): Nina Schwemmlein, Jan Pippel, E.M. Gazdag, Wulf Blankenfeldt
Software Mentions: 2
Published: over 7 years ago

10.6026/97320630017212

Molecular docking of potential inhibitors with the mTOR protein
Cited by: 3
Author(s): Jh Shazia Fathima, Selvaraj Jayaraman, Venkatacalam Sivabalan, Umapathy Vidhya Rekha, Ponnulakshmi Rajagopal, V. Vishnupriya, Malathi Kullappan, Radhika Nalinakumari Sreekandan, Surapaneni Krishna Mohan, Periyasamy Vijayalakshmi
Software Mentions: 2
Published: almost 5 years ago

10.3390/antiox10040624

Natural Chain-Breaking Antioxidants and Their Synthetic Analogs as Modulators of Oxidative Stress
Cited by: 10
Author(s): V. D. Kancheva, Maria Antonietta Dettori, D. Fabbri, Petko Alov, Silvia Angelova, Adriana Slavova-Kazakova, Paola Carta, Valery A. Menshov, Olga I. Yablonskaya, Aleksei V. Trofimov, Ivanka Tsakovska, Luciano Saso
Software Mentions: 2
Published: over 4 years ago